17-03-18 04:59:00.504 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:00.504 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:59:00.504 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 04:59:00.504 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:59:00.504 -07 000000474 INF: FPGA: Recv YRDPOS 153253
17-03-18 04:59:00.514 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:59:00.514 -07 000000610 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:59:00.514 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:59:00.514 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:59:00.514 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:59:00.624 -07 000000512 INF: FPGA: Recv YMVTO 154378 874
17-03-18 04:59:00.624 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 105 ms to get response, and 115 ms overall
17-03-18 04:59:00.624 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 04:59:00.624 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 880 steps, but required 874 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 04:59:00.624 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 04:59:01.374 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.015368,
17-03-18 04:59:01.724 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:59:03.624 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:59:03.624 -07 000000479 INF: FPGA: Recv YRDPOS 154379
17-03-18 04:59:03.634 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:59:03.634 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:59:03.654 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:59:03.654 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:59:03.654 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3149 ms
17-03-18 04:59:03.654 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 60° ===================
17-03-18 04:59:03.654 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:59:03.654 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:59:03.664 -07 000000479 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:59:03.674 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:59:03.674 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:59:03.674 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 04:59:03.684 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:59:03.684 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 60° ===================
17-03-18 04:59:03.684 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:03.684 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:59:03.684 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:03.714 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:59:03.714 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:59:03.714 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:59:04.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:59:04.034 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:59:04.034 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:59:04.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:04.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:59:04.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:59:04.204 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:04.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:59:04.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:04.234 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:59:04.234 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:59:04.234 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:59:04.364 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:59:04.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:06.724 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1817, R2=1886, Total=3703. Warn if over 250 bubbles per interval.
17-03-18 04:59:06.744 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.001704,
17-03-18 04:59:07.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:07.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:07.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:08.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:08.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:08.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:08.464 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:59:08.464 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:08.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:08.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:59:08.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:59:08.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:08.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:59:08.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:59:08.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:59:08.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:59:08.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:09.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:09.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:09.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:59:09.404 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:10.624 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 04:59:10.624 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:59:10.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:10.644 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:59:10.644 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:59:10.644 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:59:10.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:59:10.794 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:59:10.794 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:59:10.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:10.864 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:59:10.864 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:59:10.964 -07 000000610 INF: =================== Cycle #132, Pumping Reagent CMS (4) ===================
17-03-18 04:59:10.964 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:59:10.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:10.994 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:59:10.994 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:59:10.994 -07 000000610 INF: =================== Cycle #132, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:59:11.124 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:59:11.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:11.724 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:59:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1818, R2=1886, Total=3704. Warn if over 250 bubbles per interval.
17-03-18 04:59:12.114 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.031682,
17-03-18 04:59:12.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:12.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:13.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:13.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:13.084 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:59:13.084 -07 000000610 INF: =================== Cycle #132, Pumping Reagent CMS (4) ===================
17-03-18 04:59:13.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:13.244 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:59:13.244 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:59:13.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:13.404 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:59:13.404 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:59:13.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:59:13.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:59:13.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:13.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:14.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:14.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:59:14.024 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:15.244 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:59:15.244 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:59:15.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:15.264 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:59:15.264 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:59:15.264 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:59:15.414 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:59:15.434 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:59:15.434 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:59:15.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:15.504 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:59:15.504 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:59:15.604 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:15.604 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:59:15.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:15.634 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:59:15.634 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:59:15.634 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:59:15.764 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:59:15.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:16.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:16.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:16.704 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:59:16.704 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:16.724 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:59:16.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1818, R2=1887, Total=3705. Warn if over 250 bubbles per interval.
17-03-18 04:59:16.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:16.864 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:59:16.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:59:16.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:17.024 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:59:17.024 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:59:17.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:59:17.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:59:17.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:17.484 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.994908,
17-03-18 04:59:17.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:17.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:17.644 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:59:17.644 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:17.644 -07 000000447 INF: WaitCommand(10000) start
17-03-18 04:59:17.644 -07 000000625 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:59:17.644 -07 000000625 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:59:18.864 -07 000000625 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:59:18.864 -07 000000625 INF: LanePump: Xmit /1?\r
17-03-18 04:59:18.894 -07 000000625 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:59:18.894 -07 000000625 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:59:19.024 -07 000000625 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:59:19.064 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:20.594 -07 000000625 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:20.624 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:21.044 -07 000000625 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:21.074 -07 000000625 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:21.074 -07 000000625 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:59:21.074 -07 000000625 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:59:21.074 -07 000000625 INF: ===================  ===================
17-03-18 04:59:21.724 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:21.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1818, R2=1887, Total=3705. Warn if over 250 bubbles per interval.
17-03-18 04:59:22.864 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.001704,
17-03-18 04:59:26.724 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:26.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1818, R2=1887, Total=3705. Warn if over 250 bubbles per interval.
17-03-18 04:59:27.654 -07 000000447 INF: WaitCommand(10000) end
17-03-18 04:59:27.654 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:27.654 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:59:27.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:27.684 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:59:27.684 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:59:27.684 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:59:27.814 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:59:27.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:28.224 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.999021,
17-03-18 04:59:31.724 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 04:59:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 04:59:33.604 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.028963,
17-03-18 04:59:33.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:34.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:34.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:34.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:34.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:34.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:35.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:35.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:35.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:35.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:35.814 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:59:35.814 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:35.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:35.974 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:59:35.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:59:36.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:36.134 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:59:36.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:59:36.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:59:36.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:59:36.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:36.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:36.724 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:36.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 04:59:36.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:36.754 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:59:36.754 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:37.974 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:59:37.974 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:59:37.974 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:37.994 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:59:37.994 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:59:37.994 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:59:38.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:59:38.224 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:59:38.224 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:59:38.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:38.294 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:59:38.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:59:38.394 -07 000000610 INF: =================== Cycle #132, Pumping Reagent IMT (1) ===================
17-03-18 04:59:38.394 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:59:38.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:38.434 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:59:38.434 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:59:38.434 -07 000000610 INF: =================== Cycle #132, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:59:38.564 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:59:38.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:38.964 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.014009,
17-03-18 04:59:40.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:40.074 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:40.494 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:40.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:40.524 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:59:40.524 -07 000000610 INF: =================== Cycle #132, Pumping Reagent IMT (1) ===================
17-03-18 04:59:40.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:40.684 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:59:40.684 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:59:40.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:40.844 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:59:40.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:59:40.844 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:59:40.974 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:59:41.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:41.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:41.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:41.464 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:59:41.464 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:41.724 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 04:59:42.684 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:59:42.684 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:59:42.684 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:42.704 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:59:42.704 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:59:42.704 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:59:42.934 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:59:42.954 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:59:42.954 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:59:43.004 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:59:43.024 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:59:43.024 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:59:43.124 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:43.124 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:59:43.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:43.154 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:59:43.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:59:43.154 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:59:43.284 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:59:43.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:59:44.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:44.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:44.224 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 04:59:44.224 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 04:59:44.344 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.007176,
17-03-18 04:59:44.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:44.384 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:59:44.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:59:44.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:59:44.544 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:59:44.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:59:44.544 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:59:44.674 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:59:44.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:45.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:59:45.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:59:45.164 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:59:45.164 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:45.164 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 65° ===================
17-03-18 04:59:45.164 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:59:45.164 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:59:45.164 -07 000000581 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:59:45.174 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:59:45.174 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:59:45.174 -07 000000447 INF: FPGA: Recv TEC2EN 
17-03-18 04:59:45.184 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:59:45.184 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 65° ===================
17-03-18 04:59:45.184 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 04:59:45.184 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:59:46.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 04:59:49.704 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.999021,
17-03-18 04:59:51.724 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:51.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 04:59:55.084 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.014009,
17-03-18 04:59:56.724 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:59:56.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:00.444 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.999021,
17-03-18 05:00:01.724 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:05.814 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.996267,
17-03-18 05:00:06.724 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:11.184 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.001704,
17-03-18 05:00:11.724 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:15.194 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:00:15.194 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 05:00:15.194 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:00:15.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:15.324 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:00:15.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:00:15.324 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:00:15.454 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:00:15.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:16.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:16.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:16.064 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 05:00:16.064 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 05:00:16.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:16.224 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:00:16.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:00:16.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:16.384 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:00:16.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:00:16.384 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:00:16.514 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:00:16.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:16.564 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.004458,
17-03-18 05:00:16.724 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:16.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:16.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:17.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:17.004 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:00:17.004 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 05:00:17.004 -07 000000608 INF: WaitCommand(30000) start
17-03-18 05:00:17.004 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:00:17.004 -07 000000461 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:00:18.224 -07 000000461 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:00:18.224 -07 000000461 INF: LanePump: Xmit /1?\r
17-03-18 05:00:18.254 -07 000000461 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:00:18.254 -07 000000461 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:00:18.384 -07 000000461 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:00:18.424 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:20.764 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:20.794 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:21.214 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:21.244 -07 000000461 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:21.244 -07 000000461 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:00:21.244 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:00:21.244 -07 000000461 INF: ===================  ===================
17-03-18 05:00:21.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:21.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:21.924 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.008536,
17-03-18 05:00:26.724 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:26.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:27.294 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.990831,
17-03-18 05:00:31.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:32.674 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.983999,
17-03-18 05:00:36.724 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:36.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:38.034 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.975845,
17-03-18 05:00:41.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:43.414 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.012614,
17-03-18 05:00:46.724 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1819, R2=1888, Total=3707. Warn if over 250 bubbles per interval.
17-03-18 05:00:47.014 -07 000000608 INF: WaitCommand(30000) end
17-03-18 05:00:47.014 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 22° ===================
17-03-18 05:00:47.014 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:00:47.014 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:00:47.024 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:00:47.024 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:00:47.024 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:00:47.024 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 05:00:47.034 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:00:47.034 -07 000000610 INF: =================== Cycle #132, Flow Cell Temp 22° ===================
17-03-18 05:00:47.034 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 05:00:47.034 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 05:00:47.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:00:47.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:47.074 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:00:47.074 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:00:47.074 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:00:47.204 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:00:47.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:48.774 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.012614,
17-03-18 05:00:50.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:50.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:50.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:50.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:51.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:51.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:51.304 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:00:51.304 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 05:00:51.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:51.464 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:00:51.464 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:00:51.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:51.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:00:51.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:00:51.624 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:00:51.724 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:00:51.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:00:51.754 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:00:51.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:52.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:52.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:52.244 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:00:52.244 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 05:00:53.464 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:00:53.464 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:00:53.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:00:53.484 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:00:53.484 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:00:53.484 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:00:53.634 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:00:53.654 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:00:53.654 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:00:53.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:00:53.724 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:00:53.724 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:00:53.824 -07 000000610 INF: =================== Cycle #132, Pumping Reagent USM (2) ===================
17-03-18 05:00:53.824 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:00:53.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:53.854 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:00:53.854 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:00:53.854 -07 000000610 INF: =================== Cycle #132, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:00:53.984 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:00:54.024 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:54.144 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.016692,
17-03-18 05:00:55.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:55.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:55.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:55.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:55.944 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:00:55.944 -07 000000610 INF: =================== Cycle #132, Pumping Reagent USM (2) ===================
17-03-18 05:00:56.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:56.104 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:00:56.104 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:00:56.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:56.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:00:56.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:00:56.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:00:56.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:00:56.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:56.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:00:56.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:00:56.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:56.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:56.884 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:00:56.884 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 05:00:58.104 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:00:58.104 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:00:58.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:00:58.124 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:00:58.124 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:00:58.124 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:00:58.274 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:00:58.294 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:00:58.294 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:00:58.344 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:00:58.364 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:00:58.364 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:00:58.464 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 05:00:58.464 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:00:58.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:58.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:00:58.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:00:58.494 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:00:58.624 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:00:58.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:00:59.514 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.031682,
17-03-18 05:00:59.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:00:59.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:00:59.564 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:00:59.564 -07 000000610 INF: =================== Cycle #132, Pumping Reagent PR2 (3) ===================
17-03-18 05:00:59.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:59.724 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:00:59.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:00:59.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:00:59.884 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:00:59.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:00:59.884 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:01:00.014 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:01:00.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:01:00.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:01:00.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:01:00.504 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:01:00.504 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 05:01:00.504 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:01:00.504 -07 000000512 INF: WaitCommand(10000) start
17-03-18 05:01:00.504 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:01:01.724 -07 000000479 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:01:01.724 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 05:01:01.724 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:01.754 -07 000000479 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:01:01.754 -07 000000479 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:01:01.884 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:01:01.924 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:01:03.454 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 05:01:03.484 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:01:03.904 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 05:01:03.934 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:01:03.934 -07 000000479 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:01:03.934 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:01:03.934 -07 000000479 INF: ===================  ===================
17-03-18 05:01:04.884 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.005817,
17-03-18 05:01:06.724 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:10.254 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.979922,
17-03-18 05:01:10.514 -07 000000512 INF: WaitCommand(10000) end
17-03-18 05:01:10.514 -07 000000610 INF: =================== Cycle #132, Imaging ===================
17-03-18 05:01:10.514 -07 000000610 INF: Imaging Cycle 132: ScanTilesCommand Cycle 132 time start.
17-03-18 05:01:10.514 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:01:10.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:01:10.544 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:01:10.544 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:01:10.544 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:01:10.844 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:01:10.864 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:01:10.864 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:01:10.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:01:10.934 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:01:10.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:10.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:10.934 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:01:10.934 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:10.934 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:01:10.934 -07 000000382 INF: FPGA: Recv EXLED1ON 
17-03-18 05:01:10.944 -07 000000501 INF: FPGA: 'EXLED1ON' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:01:10.944 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:01:10.944 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23165
17-03-18 05:01:10.954 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:10.954 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23165 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-18 05:01:10.954 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:01:10.954 -07 000000467 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:01:10.964 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:10.964 -07 000000501 INF: RedLED: LED was on for 20 ms
17-03-18 05:01:10.964 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:01:10.964 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:01:10.964 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:10.964 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:01:10.964 -07 000000579 INF: FPGA: Recv EXLED2ON 
17-03-18 05:01:10.974 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:01:10.974 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:01:10.974 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 05:01:10.984 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:10.984 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 05:01:10.984 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:01:10.984 -07 000000461 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:01:10.994 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:10.994 -07 000000501 INF: GreenLED: LED was on for 20 ms
17-03-18 05:01:10.994 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:01:10.994 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:01:10.994 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 05:01:11.004 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:11.004 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:01:11.504 -07 000000502 INF: FPGA: Recv EMOUT
17-03-18 05:01:11.504 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:01:11.504 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:01:11.504 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 05:01:11.514 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:11.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:11.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126561262000785. ------
17-03-18 05:01:11.514 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:11.514 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17846 mm
17-03-18 05:01:11.514 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:11.524 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:01:11.524 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 05:01:11.524 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:11.524 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:11.524 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:01:11.524 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38984, sync = True, waitForSettling = False)
17-03-18 05:01:11.524 -07 000000467 INF: Z Motor: Moving to -0.178457 mm, started at -0.126561 mm, distance = -51.90 um
17-03-18 05:01:11.524 -07 000000474 INF: FPGA: Recv YRDPOS 154380
17-03-18 05:01:11.534 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:11.534 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:11.534 -07 000000502 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:11.534 -07 000000502 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:01:11.534 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:01:11.544 -07 000000467 INF: FPGA: Xmit ZDACW 38984\n [Z Motor]
17-03-18 05:01:11.544 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:01:11.554 -07 000000467 INF: FPGA: 'ZDACW 38984' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:01:11.554 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:01:11.564 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:11.564 -07 000000480 INF: FPGA: Recv ZDACR 38984
17-03-18 05:01:11.574 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:11.574 -07 000000467 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:01:11.724 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:11.734 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:11.734 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 05:01:13.234 -07 000000579 INF: FPGA: Recv YMVTO 122702 24777
17-03-18 05:01:13.234 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-18 05:01:13.234 -07 000000502 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:01:13.234 -07 000000502 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:01:13.234 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-18 05:01:15.624 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.986717,
17-03-18 05:01:16.084 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:16.084 -07 000000382 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:01:16.094 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:16.094 -07 000000502 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:16.124 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:16.124 -07 000000502 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:01:16.124 -07 000000502 INF: Y Motor: Moved to 59.9102 after 4601 ms
17-03-18 05:01:16.124 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178457 mm (DAC = 38984)
17-03-18 05:01:16.124 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.124 -07 000000479 INF: FPGA: Recv ZSGSRD 37067
17-03-18 05:01:16.134 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:16.134 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.134 -07 000000581 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:01:16.144 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.144 -07 000000424 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:01:16.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.154 -07 000000455 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:01:16.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.164 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.164 -07 000000512 INF: FPGA: Recv ZSGSRD 37072
17-03-18 05:01:16.174 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.174 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.174 -07 000000479 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:01:16.184 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.184 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.184 -07 000000606 INF: FPGA: Recv ZSGSRD 37070
17-03-18 05:01:16.194 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.194 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.194 -07 000000502 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:01:16.204 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.204 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.204 -07 000000626 INF: FPGA: Recv ZSGSRD 37068
17-03-18 05:01:16.214 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.214 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:16.214 -07 000000569 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:01:16.224 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.224 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:16.224 -07 000000467 INF: FPGA: Recv ZPIEZORD 33279
17-03-18 05:01:16.234 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:16.234 -07 000000461 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.4 V.
17-03-18 05:01:16.234 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37069 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37070 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37064 (-177.5 uncal um), Max = 37072 (-177.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:01:16.234 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37069, posNoise = 3, negNoise = 5
17-03-18 05:01:16.234 -07 000000461 INF: Z Motor: After move to -0.178457, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:16.234 -07 000000461 INF: Z Motor: Settle wait time = 4604 ms, measure time = 104 ms (allowed 150 ms), total time = 4708 ms
17-03-18 05:01:16.234 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:16.284 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-18 05:01:16.284 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:16.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:16.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:16.284 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:16.284 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:16.284 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:16.284 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:16.284 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:16.284 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:01:16.314 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:01:16.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:16.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:01:16.314 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:16.324 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:01:16.324 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 05:01:16.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:16.374 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:01:16.674 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:01:16.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:01:16.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:16.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575539096, 0x0, 559484976) start.
17-03-18 05:01:16.714 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:16.714 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:16.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:01:16.724 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:16.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575539096, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:01:16.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:16.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:16.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 05:01:16.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:16.914 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:16.914 -07 000000569 INF: Image SNR check: start
17-03-18 05:01:16.914 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:16.924 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:16.924 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:16.924 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=140.18]
17-03-18 05:01:16.924 -07 000000569 INF: Autofocus start
17-03-18 05:01:16.924 -07 000000569 INF: MeasureProfile start
17-03-18 05:01:16.934 -07 000000569 INF: MeasureProfile done
17-03-18 05:01:16.944 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:01:16.944 -07 000000569 INF: Autofocus finished
17-03-18 05:01:17.124 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:17.124 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:17.124 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178462471894072. ----------
17-03-18 05:01:17.124 -07 000000610 INF: Cycle	132	Tile	1	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:17.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37499, sync = True, waitForSettling = True)
17-03-18 05:01:17.134 -07 000000610 INF: Z Motor: Moving to -0.171659 mm, started at -0.178462 mm, distance = 6.80 um
17-03-18 05:01:17.134 -07 000000610 INF: FPGA: Xmit ZDACW 37499\n [Z Motor]
17-03-18 05:01:17.134 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:01:17.144 -07 000000610 INF: FPGA: 'ZDACW 37499' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:17.144 -07 000000618 INF: FPGA: Recv ZDACR 37499
17-03-18 05:01:17.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:17.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.304 -07 000000479 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:01:17.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:17.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.314 -07 000000474 INF: FPGA: Recv ZSGSRD 36007
17-03-18 05:01:17.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.324 -07 000000608 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:01:17.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.334 -07 000000382 INF: FPGA: Recv ZSGSRD 36011
17-03-18 05:01:17.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.344 -07 000000480 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:01:17.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.354 -07 000000581 INF: FPGA: Recv ZSGSRD 36010
17-03-18 05:01:17.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.364 -07 000000479 INF: FPGA: Recv ZSGSRD 36014
17-03-18 05:01:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.374 -07 000000625 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:01:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.384 -07 000000502 INF: FPGA: Recv ZSGSRD 36011
17-03-18 05:01:17.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:17.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:01:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:17.404 -07 000000579 INF: FPGA: Recv ZPIEZORD 31863
17-03-18 05:01:17.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:17.414 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.2 V.
17-03-18 05:01:17.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36012 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36007 (-170.8 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:01:17.414 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36012, posNoise = 3, negNoise = 5
17-03-18 05:01:17.414 -07 000000610 INF: Z Motor: After move to -0.171659, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:17.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:01:17.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:17.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:17.414 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:17.414 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:17.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:17.414 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:17.414 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:17.414 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:17.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:17.414 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:01:17.414 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:17.414 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:17.414 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:17.414 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:17.434 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:01:17.434 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:01:17.434 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:01:17.434 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:17.444 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:01:17.444 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:17.444 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:01:17.444 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 05:01:17.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37676 150\n [Camera]
17-03-18 05:01:17.654 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:18.084 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:18.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:18.084 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:18.084 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:18.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:18.084 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:18.094 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:18.094 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) start.
17-03-18 05:01:18.094 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:18.094 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) start.
17-03-18 05:01:18.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37676 816
17-03-18 05:01:18.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:18.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2583891104, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:01:18.494 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:01:18.494 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:18.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2619313368, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:01:18.494 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:01:18.494 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:18.494 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:01:18.494 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:01:18.504 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:01:18.504 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 05:01:18.634 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:18.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:18.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:18.754 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:18.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:18.754 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:18.754 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:18.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:01:18.754 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:18.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:01:18.824 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:01:18.824 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:18.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37676 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-18 05:01:18.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:18.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171672079660231. ------
17-03-18 05:01:18.834 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:18.834 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17788 mm
17-03-18 05:01:18.834 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:18.834 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:01:18.834 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:01:18.834 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:18.834 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38858, sync = True, waitForSettling = False)
17-03-18 05:01:18.834 -07 000000424 INF: Z Motor: Moving to -0.177881 mm, started at -0.171672 mm, distance = -6.21 um
17-03-18 05:01:18.844 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:01:18.844 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:18.854 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:18.854 -07 000000382 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:01:18.864 -07 000000424 INF: FPGA: Xmit ZDACW 38858\n [Z Motor]
17-03-18 05:01:18.864 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:01:18.864 -07 000000502 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:18.864 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:18.864 -07 000000502 INF: Y Motor: Moving 1332 steps1
17-03-18 05:01:18.864 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:01:18.874 -07 000000424 INF: FPGA: 'ZDACW 38858' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 05:01:18.874 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:18.874 -07 000000480 INF: FPGA: Recv ZDACR 38858
17-03-18 05:01:18.884 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:18.884 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:01:18.884 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:19.044 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:19.044 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:19.154 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:01:19.154 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:01:19.154 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:19.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:01:19.154 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:01:19.154 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:19.164 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:19.164 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 05:01:19.164 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:19.164 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:01:19.254 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:01:19.254 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:01:19.294 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:19.304 -07 000000467 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:01:19.304 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:01:19.304 -07 000000502 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:19.304 -07 000000502 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:01:19.304 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.107 mm/sec
17-03-18 05:01:20.254 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:20.254 -07 000000625 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:01:20.264 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:20.264 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:20.294 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:20.294 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:01:20.294 -07 000000502 INF: Y Motor: Moved to 60.7324 after 1458 ms (table move)
17-03-18 05:01:20.294 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177881 mm (DAC = 38858)
17-03-18 05:01:20.294 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.294 -07 000000382 INF: FPGA: Recv ZSGSRD 36979
17-03-18 05:01:20.304 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:20.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36987
17-03-18 05:01:20.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.314 -07 000000606 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:01:20.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.324 -07 000000424 INF: FPGA: Recv ZSGSRD 36982
17-03-18 05:01:20.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:20.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.334 -07 000000569 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:01:20.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.344 -07 000000579 INF: FPGA: Recv ZSGSRD 36972
17-03-18 05:01:20.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36980
17-03-18 05:01:20.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:20.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.374 -07 000000467 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:01:20.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.384 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.384 -07 000000579 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:01:20.394 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.394 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:20.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36983
17-03-18 05:01:20.404 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.404 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:20.404 -07 000000474 INF: FPGA: Recv ZPIEZORD 33154
17-03-18 05:01:20.414 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:20.414 -07 000000447 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.5 V.
17-03-18 05:01:20.414 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36981 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36981 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36972 (-176.9 uncal um), Max = 36987 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:01:20.414 -07 000000447 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36981, posNoise = 6, negNoise = 9
17-03-18 05:01:20.414 -07 000000447 INF: Z Motor: After move to -0.177881, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:20.414 -07 000000447 INF: Z Motor: Settle wait time = 1460 ms, measure time = 114 ms (allowed 150 ms), total time = 1574 ms
17-03-18 05:01:20.414 -07 000000447 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:20.454 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 05:01:20.454 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:20.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:20.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:20.454 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:20.454 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:20.454 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:20.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:20.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:20.454 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:20.464 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:01:20.464 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:20.474 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:01:20.474 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:01:20.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:20.524 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:20.824 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:20.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:20.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:20.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575539096, 0x0, 559484976) start.
17-03-18 05:01:20.864 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:20.864 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:20.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:01:20.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575539096, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:01:20.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:20.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:20.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:01:20.964 -07 000000455 INF: Autofocus start
17-03-18 05:01:20.964 -07 000000455 INF: MeasureProfile start
17-03-18 05:01:20.964 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:20.964 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:20.974 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:20.974 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:20.974 -07 000000455 INF: MeasureProfile done
17-03-18 05:01:20.974 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:01:20.974 -07 000000455 INF: Autofocus finished
17-03-18 05:01:20.994 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.973092,
17-03-18 05:01:21.174 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:21.174 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:21.174 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177897141225597. ----------
17-03-18 05:01:21.174 -07 000000610 INF: Cycle	132	Tile	2	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:21.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37373, sync = True, waitForSettling = True)
17-03-18 05:01:21.184 -07 000000610 INF: Z Motor: Moving to -0.171083 mm, started at -0.177897 mm, distance = 6.81 um
17-03-18 05:01:21.184 -07 000000610 INF: FPGA: Xmit ZDACW 37373\n [Z Motor]
17-03-18 05:01:21.184 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:01:21.194 -07 000000610 INF: FPGA: 'ZDACW 37373' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:21.194 -07 000000625 INF: FPGA: Recv ZDACR 37373
17-03-18 05:01:21.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:21.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.354 -07 000000382 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:01:21.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:21.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.364 -07 000000502 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:01:21.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.374 -07 000000625 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:01:21.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.384 -07 000000467 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:01:21.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:01:21.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.404 -07 000000512 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:01:21.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:01:21.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.424 -07 000000501 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:01:21.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:01:21.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:21.444 -07 000000569 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:01:21.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:21.454 -07 000000455 INF: FPGA: Recv ZPIEZORD 31715
17-03-18 05:01:21.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:21.464 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.3 V.
17-03-18 05:01:21.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35922 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35917 (-170.2 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:01:21.464 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35922, posNoise = 3, negNoise = 5
17-03-18 05:01:21.464 -07 000000610 INF: Z Motor: After move to -0.171083, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:21.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:01:21.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:21.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:21.464 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:21.464 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:21.464 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:21.464 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:21.464 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:21.464 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:21.464 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:21.464 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:21.464 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:21.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:21.464 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:21.464 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:21.474 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:01:21.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:21.484 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:01:21.484 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:01:21.484 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:01:21.484 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:01:21.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37549 150\n [Camera]
17-03-18 05:01:21.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:21.724 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:21.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:22.124 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:22.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:22.124 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:22.124 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:22.124 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:01:22.124 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:22.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:22.124 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:22.124 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:22.124 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:01:22.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37549 819
17-03-18 05:01:22.464 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:22.514 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:01:22.514 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:01:22.514 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:22.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:01:22.514 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:01:22.514 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:22.524 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:22.524 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:22.524 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:01:22.524 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:01:22.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:22.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:22.674 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:22.674 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:22.674 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:01:22.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:22.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:22.674 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:22.674 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:22.674 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:01:22.864 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:01:22.864 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:22.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37549 150' command took 2 ms to send, 1362 ms to get response, and 1373 ms overall
17-03-18 05:01:22.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:22.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171093900567472. ------
17-03-18 05:01:22.974 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:22.974 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17786 mm
17-03-18 05:01:22.974 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:22.984 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:22.984 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:01:22.984 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38855, sync = True, waitForSettling = False)
17-03-18 05:01:22.984 -07 000000501 INF: Z Motor: Moving to -0.177867 mm, started at -0.171094 mm, distance = -6.77 um
17-03-18 05:01:22.984 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:22.984 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:01:22.984 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:01:22.994 -07 000000501 INF: FPGA: Xmit ZDACW 38855\n [Z Motor]
17-03-18 05:01:22.994 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:01:23.004 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:23.004 -07 000000501 INF: FPGA: 'ZDACW 38855' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:01:23.004 -07 000000625 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:01:23.014 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:01:23.014 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:23.014 -07 000000455 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:23.014 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:23.014 -07 000000455 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:01:23.014 -07 000000512 INF: FPGA: Recv ZDACR 38855
17-03-18 05:01:23.024 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:23.024 -07 000000501 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:01:23.024 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:23.064 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:01:23.064 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:01:23.064 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:23.064 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:01:23.064 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:01:23.064 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:23.074 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:23.074 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:23.074 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:01:23.074 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:01:23.184 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:23.184 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:01:23.394 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:01:23.394 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:01:23.444 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:23.454 -07 000000501 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:01:23.454 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:23.454 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:23.454 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:01:23.454 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 05:01:24.404 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:24.404 -07 000000512 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:01:24.414 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.414 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:24.444 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:24.444 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:01:24.444 -07 000000455 INF: Y Motor: Moved to 61.5630 after 1457 ms (table move)
17-03-18 05:01:24.444 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177867 mm (DAC = 38855)
17-03-18 05:01:24.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.444 -07 000000424 INF: FPGA: Recv ZSGSRD 36983
17-03-18 05:01:24.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:01:24.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.454 -07 000000467 INF: FPGA: Recv ZSGSRD 36972
17-03-18 05:01:24.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.464 -07 000000480 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:01:24.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.474 -07 000000474 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:01:24.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.484 -07 000000579 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:01:24.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.494 -07 000000424 INF: FPGA: Recv ZSGSRD 36978
17-03-18 05:01:24.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.504 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.504 -07 000000461 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:01:24.514 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:01:24.514 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.514 -07 000000467 INF: FPGA: Recv ZSGSRD 36982
17-03-18 05:01:24.524 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.524 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.524 -07 000000618 INF: FPGA: Recv ZSGSRD 36981
17-03-18 05:01:24.534 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.534 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:24.534 -07 000000479 INF: FPGA: Recv ZSGSRD 36974
17-03-18 05:01:24.544 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.544 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:24.544 -07 000000501 INF: FPGA: Recv ZPIEZORD 33172
17-03-18 05:01:24.554 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:24.554 -07 000000382 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.4 V.
17-03-18 05:01:24.554 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36978 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36980 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36972 (-176.9 uncal um), Max = 36984 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:01:24.554 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36978, posNoise = 6, negNoise = 6
17-03-18 05:01:24.554 -07 000000382 INF: Z Motor: After move to -0.177867, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:24.554 -07 000000382 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:01:24.554 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:24.604 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:01:24.604 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:24.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:24.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:24.604 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:24.604 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:24.604 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:24.604 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:24.604 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:24.604 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:24.614 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:01:24.614 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:24.614 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:01:24.614 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:01:24.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:24.664 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:24.964 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:24.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:24.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:24.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:01:25.004 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:25.004 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:25.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:01:25.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:01:25.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:25.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:25.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:01:25.104 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:25.104 -07 000000424 INF: Autofocus start
17-03-18 05:01:25.104 -07 000000424 INF: MeasureProfile start
17-03-18 05:01:25.104 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:25.114 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:25.114 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:25.114 -07 000000424 INF: MeasureProfile done
17-03-18 05:01:25.114 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:01:25.114 -07 000000424 INF: Autofocus finished
17-03-18 05:01:25.314 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:25.314 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:01:25.314 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177877868589172. ----------
17-03-18 05:01:25.314 -07 000000610 INF: Cycle	132	Tile	3	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:25.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37369, sync = True, waitForSettling = True)
17-03-18 05:01:25.324 -07 000000610 INF: Z Motor: Moving to -0.171064 mm, started at -0.177878 mm, distance = 6.81 um
17-03-18 05:01:25.324 -07 000000610 INF: FPGA: Xmit ZDACW 37369\n [Z Motor]
17-03-18 05:01:25.324 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:01:25.334 -07 000000610 INF: FPGA: 'ZDACW 37369' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:01:25.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:25.334 -07 000000618 INF: FPGA: Recv ZDACR 37369
17-03-18 05:01:25.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:25.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.494 -07 000000501 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:01:25.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:25.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.504 -07 000000447 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:01:25.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:01:25.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.524 -07 000000502 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:01:25.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.534 -07 000000608 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:01:25.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.544 -07 000000579 INF: FPGA: Recv ZSGSRD 35908
17-03-18 05:01:25.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.554 -07 000000424 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:01:25.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.564 -07 000000479 INF: FPGA: Recv ZSGSRD 35931
17-03-18 05:01:25.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.574 -07 000000461 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:01:25.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:25.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:01:25.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:25.594 -07 000000625 INF: FPGA: Recv ZPIEZORD 31715
17-03-18 05:01:25.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:25.604 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.3 V.
17-03-18 05:01:25.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 35908 (-170.1 uncal um), Max = 35931 (-170.3 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:01:25.604 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 13, negNoise = 10
17-03-18 05:01:25.604 -07 000000610 INF: Z Motor: After move to -0.171064, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:25.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:01:25.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:25.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:25.604 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:25.604 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:25.604 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:25.604 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:25.604 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:25.604 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:25.604 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:01:25.604 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:25.604 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:01:25.604 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:25.604 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:25.604 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:25.614 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:01:25.614 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:25.614 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:01:25.614 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:01:25.624 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:01:25.624 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:01:25.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37546 150\n [Camera]
17-03-18 05:01:25.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:26.254 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:26.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:26.254 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:26.254 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:26.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:26.254 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:26.264 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:26.264 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:01:26.264 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:26.264 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:01:26.364 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.98264,
17-03-18 05:01:26.444 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37546 816
17-03-18 05:01:26.594 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:26.644 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:01:26.644 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:01:26.644 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:26.644 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:01:26.644 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:01:26.644 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:26.654 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:26.654 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:01:26.654 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:01:26.664 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:01:26.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:26.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:26.804 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:26.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:26.804 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:26.804 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:26.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:26.804 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:26.814 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:26.814 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:01:26.814 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:26.814 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:01:26.994 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:01:26.994 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:26.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37546 150' command took 2 ms to send, 1367 ms to get response, and 1372 ms overall
17-03-18 05:01:26.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:26.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171068203718905. ------
17-03-18 05:01:27.004 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:27.004 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17731 mm
17-03-18 05:01:27.004 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:27.004 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:27.004 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38732, sync = True, waitForSettling = False)
17-03-18 05:01:27.004 -07 000000479 INF: Z Motor: Moving to -0.177304 mm, started at -0.171068 mm, distance = -6.24 um
17-03-18 05:01:27.004 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:01:27.004 -07 000000447 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:01:27.014 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:01:27.014 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:27.014 -07 000000474 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:01:27.024 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:01:27.024 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:27.024 -07 000000447 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:27.024 -07 000000447 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:01:27.024 -07 000000479 INF: FPGA: Xmit ZDACW 38732\n [Z Motor]
17-03-18 05:01:27.024 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:01:27.034 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:27.034 -07 000000479 INF: FPGA: 'ZDACW 38732' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:01:27.044 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:27.054 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:27.054 -07 000000625 INF: FPGA: Recv ZDACR 38732
17-03-18 05:01:27.064 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:01:27.064 -07 000000479 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:01:27.204 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:01:27.204 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:01:27.204 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:27.204 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:01:27.204 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:01:27.204 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:27.214 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:27.214 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:27.214 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:01:27.214 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:01:27.234 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:27.234 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:01:27.414 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:01:27.414 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 05:01:27.464 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:27.474 -07 000000455 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:01:27.474 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:27.474 -07 000000447 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:27.474 -07 000000447 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:01:27.474 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:01:28.424 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:28.424 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:01:28.434 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:28.434 -07 000000447 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:28.464 -07 000000447 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:28.464 -07 000000447 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:01:28.464 -07 000000447 INF: Y Motor: Moved to 62.3950 after 1452 ms (table move)
17-03-18 05:01:28.464 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177304 mm (DAC = 38732)
17-03-18 05:01:28.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.464 -07 000000467 INF: FPGA: Recv ZSGSRD 36893
17-03-18 05:01:28.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:28.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.474 -07 000000474 INF: FPGA: Recv ZSGSRD 36896
17-03-18 05:01:28.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.484 -07 000000455 INF: FPGA: Recv ZSGSRD 36889
17-03-18 05:01:28.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.494 -07 000000606 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:01:28.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.504 -07 000000512 INF: FPGA: Recv ZSGSRD 36890
17-03-18 05:01:28.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.514 -07 000000581 INF: FPGA: Recv ZSGSRD 36899
17-03-18 05:01:28.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.524 -07 000000579 INF: FPGA: Recv ZSGSRD 36894
17-03-18 05:01:28.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.534 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.534 -07 000000447 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:01:28.544 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.544 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.544 -07 000000606 INF: FPGA: Recv ZSGSRD 36899
17-03-18 05:01:28.554 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.554 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:28.554 -07 000000618 INF: FPGA: Recv ZSGSRD 36900
17-03-18 05:01:28.564 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.564 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:28.564 -07 000000581 INF: FPGA: Recv ZPIEZORD 33074
17-03-18 05:01:28.574 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:28.574 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.4 V.
17-03-18 05:01:28.574 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36893 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36894 (-176.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36884 (-176.4 uncal um), Max = 36900 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:01:28.574 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36893, posNoise = 7, negNoise = 9
17-03-18 05:01:28.574 -07 000000501 INF: Z Motor: After move to -0.177304, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:28.574 -07 000000501 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:01:28.574 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:28.624 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:01:28.624 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:28.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:28.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:28.624 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:28.634 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:28.634 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:28.634 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:01:28.634 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:28.634 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:28.634 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:28.634 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:28.644 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:01:28.644 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:01:28.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:28.694 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:28.984 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:28.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:28.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:28.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:01:29.024 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:29.024 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:29.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:01:29.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:01:29.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:29.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:29.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:01:29.134 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:29.134 -07 000000479 INF: Autofocus start
17-03-18 05:01:29.134 -07 000000479 INF: MeasureProfile start
17-03-18 05:01:29.134 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:29.144 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:01:29.144 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:29.144 -07 000000479 INF: MeasureProfile done
17-03-18 05:01:29.144 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:01:29.144 -07 000000479 INF: Autofocus finished
17-03-18 05:01:29.344 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:29.344 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:29.344 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177331810557122. ----------
17-03-18 05:01:29.344 -07 000000610 INF: Cycle	132	Tile	4	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:29.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37247, sync = True, waitForSettling = True)
17-03-18 05:01:29.354 -07 000000610 INF: Z Motor: Moving to -0.170506 mm, started at -0.177332 mm, distance = 6.83 um
17-03-18 05:01:29.354 -07 000000610 INF: FPGA: Xmit ZDACW 37247\n [Z Motor]
17-03-18 05:01:29.354 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:01:29.364 -07 000000610 INF: FPGA: 'ZDACW 37247' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:01:29.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:29.364 -07 000000455 INF: FPGA: Recv ZDACR 37247
17-03-18 05:01:29.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:29.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35840
17-03-18 05:01:29.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:29.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.534 -07 000000625 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:01:29.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:01:29.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.554 -07 000000467 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:01:29.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.564 -07 000000461 INF: FPGA: Recv ZSGSRD 35835
17-03-18 05:01:29.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.574 -07 000000579 INF: FPGA: Recv ZSGSRD 35838
17-03-18 05:01:29.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.584 -07 000000625 INF: FPGA: Recv ZSGSRD 35829
17-03-18 05:01:29.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.594 -07 000000424 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:01:29.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:01:29.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:29.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35828
17-03-18 05:01:29.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:29.624 -07 000000606 INF: FPGA: Recv ZPIEZORD 31635
17-03-18 05:01:29.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:29.634 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.3 V.
17-03-18 05:01:29.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35834 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35834 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:01:29.634 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35834, posNoise = 6, negNoise = 6
17-03-18 05:01:29.634 -07 000000610 INF: Z Motor: After move to -0.170506, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:29.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:01:29.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:29.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:29.634 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:29.634 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:29.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:29.634 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:29.634 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:29.634 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:29.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:29.634 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:29.634 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:01:29.634 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:29.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:01:29.644 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:29.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:01:29.644 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:29.654 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:01:29.654 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:01:29.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:01:29.654 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:01:29.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37424 150\n [Camera]
17-03-18 05:01:29.864 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:30.294 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:30.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:30.294 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:30.294 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:30.294 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:01:30.294 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:30.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:30.294 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:30.294 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:30.294 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:01:30.484 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37424 816
17-03-18 05:01:30.634 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:30.694 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:01:30.694 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:01:30.694 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:30.694 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:01:30.694 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:01:30.694 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:30.704 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:30.704 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:01:30.704 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:30.704 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:01:30.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:30.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:30.844 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:30.844 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:30.844 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:01:30.844 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:30.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:30.844 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:30.844 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:30.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:01:31.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:01:31.034 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:31.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37424 150' command took 2 ms to send, 1364 ms to get response, and 1373 ms overall
17-03-18 05:01:31.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:31.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170528569898997. ------
17-03-18 05:01:31.034 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:31.034 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17698 mm
17-03-18 05:01:31.034 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:31.164 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:31.164 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 125 ms to get response, and 126 ms overall
17-03-18 05:01:31.164 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38661, sync = True, waitForSettling = False)
17-03-18 05:01:31.164 -07 000000606 INF: Z Motor: Moving to -0.176979 mm, started at -0.170529 mm, distance = -6.45 um
17-03-18 05:01:31.164 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:01:31.164 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:01:31.174 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:31.184 -07 000000606 INF: FPGA: Xmit ZDACW 38661\n [Z Motor]
17-03-18 05:01:31.184 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:01:31.194 -07 000000606 INF: FPGA: 'ZDACW 38661' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:01:31.194 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:31.194 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:01:31.204 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 05:01:31.204 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:31.204 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:31.204 -07 000000502 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:01:31.204 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:31.204 -07 000000461 INF: FPGA: Recv ZDACR 38661
17-03-18 05:01:31.214 -07 000000606 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:31.214 -07 000000606 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:01:31.214 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:31.254 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 05:01:31.254 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:01:31.254 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:31.254 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 05:01:31.254 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:01:31.254 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:31.254 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:31.254 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:31.264 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:01:31.264 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:01:31.374 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:31.374 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall
17-03-18 05:01:31.594 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:01:31.594 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 391 ms overall
17-03-18 05:01:31.644 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:31.644 -07 000000608 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:01:31.654 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:31.654 -07 000000502 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:31.654 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:01:31.654 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.142 mm/sec
17-03-18 05:01:31.724 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:31.794 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.019446,
17-03-18 05:01:32.604 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:32.604 -07 000000480 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:01:32.614 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:32.614 -07 000000502 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:32.644 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:32.644 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:01:32.644 -07 000000502 INF: Y Motor: Moved to 63.2231 after 1474 ms (table move)
17-03-18 05:01:32.644 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176979 mm (DAC = 38661)
17-03-18 05:01:32.644 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.644 -07 000000461 INF: FPGA: Recv ZSGSRD 36842
17-03-18 05:01:32.654 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:01:32.654 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.654 -07 000000480 INF: FPGA: Recv ZSGSRD 36834
17-03-18 05:01:32.664 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.664 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.664 -07 000000625 INF: FPGA: Recv ZSGSRD 36835
17-03-18 05:01:32.674 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.674 -07 000000455 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:01:32.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.684 -07 000000579 INF: FPGA: Recv ZSGSRD 36845
17-03-18 05:01:32.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.694 -07 000000461 INF: FPGA: Recv ZSGSRD 36841
17-03-18 05:01:32.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.704 -07 000000467 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:01:32.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.714 -07 000000569 INF: FPGA: Recv ZSGSRD 36840
17-03-18 05:01:32.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.724 -07 000000618 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:01:32.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:32.734 -07 000000579 INF: FPGA: Recv ZSGSRD 36843
17-03-18 05:01:32.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.744 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:32.744 -07 000000447 INF: FPGA: Recv ZPIEZORD 32986
17-03-18 05:01:32.754 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:32.754 -07 000000512 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.5 V.
17-03-18 05:01:32.754 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36839 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36839 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36834 (-176.1 uncal um), Max = 36845 (-176.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:01:32.754 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36839, posNoise = 6, negNoise = 5
17-03-18 05:01:32.754 -07 000000512 INF: Z Motor: After move to -0.176979, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:32.754 -07 000000512 INF: Z Motor: Settle wait time = 1478 ms, measure time = 106 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:01:32.754 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:32.804 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1760 ms
17-03-18 05:01:32.804 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:32.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:32.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:32.804 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:32.804 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:32.814 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:32.814 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:32.814 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:01:32.814 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:32.814 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:32.814 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:32.824 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:01:32.824 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:01:32.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:32.874 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:33.174 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:33.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:33.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:33.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:01:33.204 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:33.214 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:33.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:01:33.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:01:33.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:33.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:33.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:01:33.314 -07 000000606 INF: Autofocus start
17-03-18 05:01:33.314 -07 000000606 INF: MeasureProfile start
17-03-18 05:01:33.314 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:33.314 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:33.324 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:33.324 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:33.324 -07 000000606 INF: MeasureProfile done
17-03-18 05:01:33.324 -07 000000606 INF: X=-32  Z correction [um]=-0.2344
17-03-18 05:01:33.324 -07 000000606 INF: Autofocus finished
17-03-18 05:01:33.524 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:33.524 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:33.524 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.176984903101467. ----------
17-03-18 05:01:33.524 -07 000000610 INF: Cycle	132	Tile	5	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:33.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37122, sync = True, waitForSettling = True)
17-03-18 05:01:33.534 -07 000000610 INF: Z Motor: Moving to -0.169934 mm, started at -0.176985 mm, distance = 7.05 um
17-03-18 05:01:33.534 -07 000000610 INF: FPGA: Xmit ZDACW 37122\n [Z Motor]
17-03-18 05:01:33.534 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:01:33.544 -07 000000610 INF: FPGA: 'ZDACW 37122' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:33.544 -07 000000618 INF: FPGA: Recv ZDACR 37122
17-03-18 05:01:33.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:33.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35742
17-03-18 05:01:33.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:33.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.714 -07 000000626 INF: FPGA: Recv ZSGSRD 35743
17-03-18 05:01:33.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.724 -07 000000569 INF: FPGA: Recv ZSGSRD 35749
17-03-18 05:01:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.734 -07 000000480 INF: FPGA: Recv ZSGSRD 35745
17-03-18 05:01:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.744 -07 000000608 INF: FPGA: Recv ZSGSRD 35739
17-03-18 05:01:33.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35750
17-03-18 05:01:33.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.764 -07 000000608 INF: FPGA: Recv ZSGSRD 35742
17-03-18 05:01:33.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.774 -07 000000618 INF: FPGA: Recv ZSGSRD 35739
17-03-18 05:01:33.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.784 -07 000000455 INF: FPGA: Recv ZSGSRD 35744
17-03-18 05:01:33.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:33.794 -07 000000502 INF: FPGA: Recv ZSGSRD 35741
17-03-18 05:01:33.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:33.804 -07 000000581 INF: FPGA: Recv ZPIEZORD 31504
17-03-18 05:01:33.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:33.814 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.3 V.
17-03-18 05:01:33.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35743 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35742 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35739 (-169.0 uncal um), Max = 35750 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:01:33.814 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35743, posNoise = 7, negNoise = 4
17-03-18 05:01:33.814 -07 000000610 INF: Z Motor: After move to -0.169934, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:33.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:01:33.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:33.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:33.814 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:33.814 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:33.814 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:33.814 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:33.814 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:33.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:33.814 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:33.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:33.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:33.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:33.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:01:33.824 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:33.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:01:33.824 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:33.834 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:01:33.834 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:01:33.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:01:33.834 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:01:33.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37299 150\n [Camera]
17-03-18 05:01:34.034 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:34.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:34.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:34.474 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:34.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:34.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:34.474 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:34.474 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:34.474 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:01:34.484 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:34.484 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:01:34.664 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37299 816
17-03-18 05:01:34.814 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:34.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:01:34.854 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:01:34.854 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:34.854 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:01:34.854 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:01:34.854 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:34.864 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:34.864 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:34.864 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:01:34.864 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:01:35.014 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1174
17-03-18 05:01:35.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1174
17-03-18 05:01:35.024 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:35.024 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1174
17-03-18 05:01:35.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1174
17-03-18 05:01:35.024 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:35.034 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:35.034 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:01:35.034 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:35.034 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:01:35.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:01:35.214 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:35.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37299 150' command took 2 ms to send, 1360 ms to get response, and 1372 ms overall
17-03-18 05:01:35.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:35.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.169943966594097. ------
17-03-18 05:01:35.334 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:35.334 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17636 mm
17-03-18 05:01:35.334 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:35.334 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:01:35.334 -07 000000625 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:01:35.334 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38527, sync = True, waitForSettling = False)
17-03-18 05:01:35.334 -07 000000461 INF: Z Motor: Moving to -0.176365 mm, started at -0.169944 mm, distance = -6.42 um
17-03-18 05:01:35.334 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:35.344 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:01:35.344 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:35.344 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:01:35.354 -07 000000461 INF: FPGA: Xmit ZDACW 38527\n [Z Motor]
17-03-18 05:01:35.354 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:01:35.354 -07 000000625 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:35.354 -07 000000625 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:35.354 -07 000000625 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:01:35.354 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:01:35.364 -07 000000461 INF: FPGA: 'ZDACW 38527' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:01:35.364 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:35.374 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:35.384 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:35.384 -07 000000608 INF: FPGA: Recv ZDACR 38527
17-03-18 05:01:35.394 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:01:35.394 -07 000000461 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:01:35.424 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:01:35.424 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:01:35.424 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:35.424 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:01:35.424 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:01:35.424 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:35.434 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:35.434 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:35.434 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:01:35.434 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:01:35.564 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:35.564 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:01:35.744 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:01:35.744 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 05:01:35.794 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:35.804 -07 000000455 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:01:35.804 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:35.804 -07 000000625 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:35.804 -07 000000625 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:01:35.804 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.115 mm/sec
17-03-18 05:01:36.724 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:36.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:36.754 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:36.754 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:01:36.764 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:36.764 -07 000000625 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:36.784 -07 000000625 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:36.784 -07 000000625 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:01:36.784 -07 000000625 INF: Y Motor: Moved to 64.0562 after 1452 ms (table move)
17-03-18 05:01:36.794 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176365 mm (DAC = 38527)
17-03-18 05:01:36.794 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.794 -07 000000447 INF: FPGA: Recv ZSGSRD 36752
17-03-18 05:01:36.804 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:36.804 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36747
17-03-18 05:01:36.814 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:36.814 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.814 -07 000000382 INF: FPGA: Recv ZSGSRD 36745
17-03-18 05:01:36.824 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:36.824 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.824 -07 000000502 INF: FPGA: Recv ZSGSRD 36742
17-03-18 05:01:36.834 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:36.854 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36743
17-03-18 05:01:36.864 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:01:36.874 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.874 -07 000000447 INF: FPGA: Recv ZSGSRD 36749
17-03-18 05:01:36.884 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:36.884 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.884 -07 000000461 INF: FPGA: Recv ZSGSRD 36752
17-03-18 05:01:36.894 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:36.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.904 -07 000000479 INF: FPGA: Recv ZSGSRD 36743
17-03-18 05:01:36.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:36.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.914 -07 000000382 INF: FPGA: Recv ZSGSRD 36740
17-03-18 05:01:36.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:36.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:36.944 -07 000000467 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:01:36.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:01:36.954 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:36.954 -07 000000501 INF: FPGA: Recv ZPIEZORD 32844
17-03-18 05:01:36.964 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:36.964 -07 000000618 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.6 V.
17-03-18 05:01:36.964 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36745 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36744 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36738 (-175.4 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:01:36.964 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36745, posNoise = 7, negNoise = 7
17-03-18 05:01:36.964 -07 000000618 INF: Z Motor: After move to -0.176365, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:36.964 -07 000000618 INF: Z Motor: Settle wait time = 1455 ms, measure time = 168 ms (allowed 150 ms), total time = 1623 ms
17-03-18 05:01:36.964 -07 000000618 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-18 05:01:36.964 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:01:36.964 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:36.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:36.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:36.964 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:36.964 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:36.964 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:36.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:36.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:01:36.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:36.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:36.974 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:36.984 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:01:36.984 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:01:36.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:37.034 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:37.164 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.000345,
17-03-18 05:01:37.324 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:37.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:37.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:37.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:01:37.364 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:37.374 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:37.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:01:37.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:01:37.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:37.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:37.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:01:37.474 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:37.474 -07 000000579 INF: Autofocus start
17-03-18 05:01:37.474 -07 000000579 INF: MeasureProfile start
17-03-18 05:01:37.474 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:37.484 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:01:37.484 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:37.484 -07 000000579 INF: MeasureProfile done
17-03-18 05:01:37.484 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:01:37.484 -07 000000579 INF: Autofocus finished
17-03-18 05:01:37.684 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:37.684 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:37.684 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176381027160141. ----------
17-03-18 05:01:37.684 -07 000000610 INF: Cycle	132	Tile	6	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:37.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37024, sync = True, waitForSettling = True)
17-03-18 05:01:37.694 -07 000000610 INF: Z Motor: Moving to -0.169485 mm, started at -0.176381 mm, distance = 6.90 um
17-03-18 05:01:37.694 -07 000000610 INF: FPGA: Xmit ZDACW 37024\n [Z Motor]
17-03-18 05:01:37.694 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:01:37.704 -07 000000610 INF: FPGA: 'ZDACW 37024' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:01:37.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:37.704 -07 000000569 INF: FPGA: Recv ZDACR 37024
17-03-18 05:01:37.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:37.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.864 -07 000000606 INF: FPGA: Recv ZSGSRD 35674
17-03-18 05:01:37.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:37.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.874 -07 000000467 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:01:37.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.884 -07 000000581 INF: FPGA: Recv ZSGSRD 35667
17-03-18 05:01:37.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.894 -07 000000512 INF: FPGA: Recv ZSGSRD 35677
17-03-18 05:01:37.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.904 -07 000000579 INF: FPGA: Recv ZSGSRD 35672
17-03-18 05:01:37.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.914 -07 000000479 INF: FPGA: Recv ZSGSRD 35679
17-03-18 05:01:37.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.924 -07 000000461 INF: FPGA: Recv ZSGSRD 35672
17-03-18 05:01:37.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.934 -07 000000447 INF: FPGA: Recv ZSGSRD 35675
17-03-18 05:01:37.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.944 -07 000000608 INF: FPGA: Recv ZSGSRD 35674
17-03-18 05:01:37.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:37.954 -07 000000455 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:01:37.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:37.964 -07 000000606 INF: FPGA: Recv ZPIEZORD 31447
17-03-18 05:01:37.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:37.974 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.3 V.
17-03-18 05:01:37.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35673 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35673 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35667 (-168.6 uncal um), Max = 35679 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:01:37.974 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35673, posNoise = 6, negNoise = 6
17-03-18 05:01:37.974 -07 000000610 INF: Z Motor: After move to -0.169485, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:37.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:01:37.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:37.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:37.974 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:37.974 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:37.974 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:37.974 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:37.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:37.974 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:37.974 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:37.974 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:37.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:37.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:37.984 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:01:37.984 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:37.984 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:01:37.984 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:37.994 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:01:37.994 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:01:37.994 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:01:37.994 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:01:37.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37200 150\n [Camera]
17-03-18 05:01:38.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:38.624 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:38.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:38.624 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:38.624 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:38.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:38.634 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:38.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:38.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:01:38.634 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:38.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:01:38.824 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37200 817
17-03-18 05:01:38.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:39.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:01:39.014 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:01:39.014 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:39.014 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:01:39.014 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:01:39.014 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:39.014 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:01:39.014 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:01:39.014 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:39.024 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:01:39.174 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:39.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:39.174 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:39.174 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:39.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:01:39.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:39.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:39.184 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:39.184 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:39.184 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:01:39.364 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:01:39.364 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:39.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37200 150' command took 2 ms to send, 1368 ms to get response, and 1372 ms overall
17-03-18 05:01:39.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:39.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169494271744174. ------
17-03-18 05:01:39.374 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17583 mm
17-03-18 05:01:39.374 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:39.374 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:39.374 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:39.374 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:01:39.374 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:01:39.374 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38410, sync = True, waitForSettling = False)
17-03-18 05:01:39.374 -07 000000501 INF: Z Motor: Moving to -0.175830 mm, started at -0.169494 mm, distance = -6.34 um
17-03-18 05:01:39.384 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:01:39.384 -07 000000501 INF: FPGA: Xmit ZDACW 38410\n [Z Motor]
17-03-18 05:01:39.384 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:01:39.394 -07 000000501 INF: FPGA: 'ZDACW 38410' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:39.394 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:39.404 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:39.404 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:01:39.414 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:01:39.414 -07 000000480 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:39.414 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:39.414 -07 000000569 INF: FPGA: Recv ZDACR 38410
17-03-18 05:01:39.414 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:39.414 -07 000000480 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:01:39.424 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:01:39.424 -07 000000501 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:01:39.424 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:39.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:01:39.574 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:01:39.574 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:39.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:01:39.574 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:01:39.574 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:39.574 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:39.574 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:39.574 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:01:39.584 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:01:39.594 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:39.594 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:01:39.794 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:01:39.794 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 05:01:39.844 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:39.844 -07 000000382 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:01:39.854 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:39.854 -07 000000480 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:39.854 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:01:39.854 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.836 mm, average velocity = 2.190 mm/sec
17-03-18 05:01:40.804 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:40.804 -07 000000606 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:01:40.814 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.814 -07 000000480 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:40.844 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:40.844 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:01:40.844 -07 000000480 INF: Y Motor: Moved to 64.8779 after 1463 ms (table move)
17-03-18 05:01:40.844 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175830 mm (DAC = 38410)
17-03-18 05:01:40.844 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.844 -07 000000501 INF: FPGA: Recv ZSGSRD 36657
17-03-18 05:01:40.854 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:01:40.854 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.854 -07 000000618 INF: FPGA: Recv ZSGSRD 36661
17-03-18 05:01:40.864 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.864 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.864 -07 000000608 INF: FPGA: Recv ZSGSRD 36659
17-03-18 05:01:40.874 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.874 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.874 -07 000000424 INF: FPGA: Recv ZSGSRD 36663
17-03-18 05:01:40.884 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.884 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.884 -07 000000455 INF: FPGA: Recv ZSGSRD 36658
17-03-18 05:01:40.894 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.894 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.894 -07 000000569 INF: FPGA: Recv ZSGSRD 36658
17-03-18 05:01:40.904 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.904 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.904 -07 000000382 INF: FPGA: Recv ZSGSRD 36657
17-03-18 05:01:40.914 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.914 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.914 -07 000000606 INF: FPGA: Recv ZSGSRD 36657
17-03-18 05:01:40.924 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.924 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.924 -07 000000625 INF: FPGA: Recv ZSGSRD 36663
17-03-18 05:01:40.934 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:40.934 -07 000000626 INF: FPGA: Recv ZSGSRD 36659
17-03-18 05:01:40.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.944 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:40.944 -07 000000512 INF: FPGA: Recv ZPIEZORD 32758
17-03-18 05:01:40.954 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:40.954 -07 000000447 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.6 V.
17-03-18 05:01:40.954 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36659 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36658 (-174.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36657 (-174.9 uncal um), Max = 36663 (-175.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:01:40.954 -07 000000447 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36659, posNoise = 4, negNoise = 2
17-03-18 05:01:40.954 -07 000000447 INF: Z Motor: After move to -0.175830, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:40.954 -07 000000447 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:01:40.954 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:41.004 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:01:41.004 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:41.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:41.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:41.004 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:41.004 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:41.004 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:41.004 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:41.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:41.014 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:41.014 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:41.014 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:41.024 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:01:41.024 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:01:41.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:41.064 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:41.364 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:41.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:41.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:41.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:01:41.404 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:41.404 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:41.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:01:41.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:01:41.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:41.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:41.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:01:41.504 -07 000000581 INF: Autofocus start
17-03-18 05:01:41.504 -07 000000581 INF: MeasureProfile start
17-03-18 05:01:41.504 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:41.504 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:41.514 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:41.514 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:41.514 -07 000000581 INF: MeasureProfile done
17-03-18 05:01:41.514 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:01:41.514 -07 000000581 INF: Autofocus finished
17-03-18 05:01:41.714 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:41.714 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:41.714 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.17582854491595. ----------
17-03-18 05:01:41.714 -07 000000610 INF: Cycle	132	Tile	7	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:41.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36924, sync = True, waitForSettling = True)
17-03-18 05:01:41.724 -07 000000610 INF: Z Motor: Moving to -0.169027 mm, started at -0.175829 mm, distance = 6.80 um
17-03-18 05:01:41.724 -07 000000610 INF: FPGA: Xmit ZDACW 36924\n [Z Motor]
17-03-18 05:01:41.724 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:01:41.724 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:41.734 -07 000000610 INF: FPGA: 'ZDACW 36924' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:41.734 -07 000000502 INF: FPGA: Recv ZDACR 36924
17-03-18 05:01:41.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.894 -07 000000479 INF: FPGA: Recv ZSGSRD 35601
17-03-18 05:01:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.904 -07 000000512 INF: FPGA: Recv ZSGSRD 35602
17-03-18 05:01:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.914 -07 000000501 INF: FPGA: Recv ZSGSRD 35596
17-03-18 05:01:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35603
17-03-18 05:01:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.934 -07 000000579 INF: FPGA: Recv ZSGSRD 35604
17-03-18 05:01:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.954 -07 000000479 INF: FPGA: Recv ZSGSRD 35598
17-03-18 05:01:41.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:41.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.964 -07 000000455 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:01:41.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.974 -07 000000626 INF: FPGA: Recv ZSGSRD 35612
17-03-18 05:01:41.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.984 -07 000000455 INF: FPGA: Recv ZSGSRD 35597
17-03-18 05:01:41.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:41.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:41.994 -07 000000618 INF: FPGA: Recv ZSGSRD 35602
17-03-18 05:01:42.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:42.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:42.004 -07 000000625 INF: FPGA: Recv ZPIEZORD 31317
17-03-18 05:01:42.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:42.014 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.4 V.
17-03-18 05:01:42.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35602 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35596 (-168.1 uncal um), Max = 35612 (-168.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:01:42.014 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35602, posNoise = 10, negNoise = 6
17-03-18 05:01:42.014 -07 000000610 INF: Z Motor: After move to -0.169027, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:42.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 05:01:42.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:42.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:42.014 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:42.014 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:42.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:42.014 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:42.014 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:42.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:01:42.014 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:42.014 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:42.014 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:42.014 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:42.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:01:42.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:42.024 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:01:42.024 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:42.034 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:01:42.034 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:01:42.034 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:01:42.034 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:01:42.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37101 150\n [Camera]
17-03-18 05:01:42.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:42.574 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.008536,
17-03-18 05:01:42.674 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:42.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:42.674 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:42.674 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:42.674 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:01:42.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:42.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:42.674 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:42.674 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:42.674 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:01:42.864 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37101 816
17-03-18 05:01:43.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:43.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:01:43.054 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:01:43.054 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:43.064 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:43.064 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:01:43.064 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:01:43.064 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:43.064 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:43.064 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:01:43.064 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:01:43.224 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:43.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:43.224 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:43.224 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:43.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:01:43.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:43.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:43.224 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:43.224 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:43.224 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:01:43.414 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:01:43.414 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:43.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37101 150' command took 2 ms to send, 1363 ms to get response, and 1373 ms overall
17-03-18 05:01:43.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:43.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169038152682109. ------
17-03-18 05:01:43.414 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:43.414 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17562 mm
17-03-18 05:01:43.414 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:43.424 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:01:43.424 -07 000000618 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:01:43.424 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38364, sync = True, waitForSettling = False)
17-03-18 05:01:43.424 -07 000000625 INF: Z Motor: Moving to -0.175619 mm, started at -0.169038 mm, distance = -6.58 um
17-03-18 05:01:43.424 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:43.424 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 05:01:43.424 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:43.424 -07 000000461 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:01:43.554 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:43.554 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-18 05:01:43.554 -07 000000618 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:43.554 -07 000000618 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:43.554 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:01:43.564 -07 000000625 INF: FPGA: Xmit ZDACW 38364\n [Z Motor]
17-03-18 05:01:43.564 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:01:43.574 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:43.574 -07 000000625 INF: FPGA: 'ZDACW 38364' command took 0 ms to send, 0 ms to get response, and 148 ms overall
17-03-18 05:01:43.584 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:43.584 -07 000000467 INF: FPGA: Recv ZDACR 38364
17-03-18 05:01:43.594 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:43.594 -07 000000625 INF: Z Motor: MoveAbsStepped took 168 ms (did NOT wait for settling yet))
17-03-18 05:01:43.624 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:01:43.624 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:01:43.624 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:01:43.624 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:43.624 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:01:43.624 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:43.624 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:43.634 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:43.634 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:01:43.634 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:01:43.754 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:43.754 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 332 ms overall
17-03-18 05:01:43.944 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:01:43.944 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:01:43.994 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:44.004 -07 000000382 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:01:44.004 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:01:44.004 -07 000000618 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:44.004 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:01:44.004 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.138 mm/sec
17-03-18 05:01:44.954 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:44.954 -07 000000479 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:01:44.964 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:44.964 -07 000000618 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:44.994 -07 000000618 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:44.994 -07 000000618 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:01:44.994 -07 000000618 INF: Y Motor: Moved to 65.7129 after 1577 ms (table move)
17-03-18 05:01:45.004 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175619 mm (DAC = 38364)
17-03-18 05:01:45.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.004 -07 000000579 INF: FPGA: Recv ZSGSRD 36626
17-03-18 05:01:45.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:45.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.014 -07 000000382 INF: FPGA: Recv ZSGSRD 36630
17-03-18 05:01:45.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.024 -07 000000625 INF: FPGA: Recv ZSGSRD 36625
17-03-18 05:01:45.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.034 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.034 -07 000000424 INF: FPGA: Recv ZSGSRD 36622
17-03-18 05:01:45.044 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.044 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.044 -07 000000618 INF: FPGA: Recv ZSGSRD 36629
17-03-18 05:01:45.054 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.054 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.054 -07 000000467 INF: FPGA: Recv ZSGSRD 36626
17-03-18 05:01:45.064 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.064 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36624
17-03-18 05:01:45.074 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.074 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.074 -07 000000480 INF: FPGA: Recv ZSGSRD 36630
17-03-18 05:01:45.084 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.084 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.084 -07 000000479 INF: FPGA: Recv ZSGSRD 36617
17-03-18 05:01:45.094 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.094 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:45.094 -07 000000501 INF: FPGA: Recv ZSGSRD 36626
17-03-18 05:01:45.104 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.104 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:45.104 -07 000000579 INF: FPGA: Recv ZPIEZORD 32670
17-03-18 05:01:45.114 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.114 -07 000000502 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.7 V.
17-03-18 05:01:45.114 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36626 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36626 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36617 (-174.7 uncal um), Max = 36630 (-174.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:01:45.114 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36626, posNoise = 4, negNoise = 9
17-03-18 05:01:45.114 -07 000000502 INF: Z Motor: After move to -0.175619, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:45.114 -07 000000502 INF: Z Motor: Settle wait time = 1581 ms, measure time = 107 ms (allowed 150 ms), total time = 1688 ms
17-03-18 05:01:45.114 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:45.164 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 05:01:45.164 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:45.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:45.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:45.164 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:45.164 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:45.164 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:45.164 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:45.164 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:45.164 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:45.174 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:45.174 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:45.184 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:01:45.184 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:01:45.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:45.234 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:45.534 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:45.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:45.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:45.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:01:45.574 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:45.574 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:45.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:01:45.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:01:45.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:45.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:45.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:01:45.674 -07 000000581 INF: Autofocus start
17-03-18 05:01:45.674 -07 000000581 INF: MeasureProfile start
17-03-18 05:01:45.674 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:45.674 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:45.684 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:45.684 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:45.684 -07 000000581 INF: MeasureProfile done
17-03-18 05:01:45.684 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:01:45.684 -07 000000581 INF: Autofocus finished
17-03-18 05:01:45.884 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:45.884 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:01:45.884 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175616545915272. ----------
17-03-18 05:01:45.894 -07 000000610 INF: Cycle	132	Tile	8	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:45.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36897, sync = True, waitForSettling = True)
17-03-18 05:01:45.894 -07 000000610 INF: Z Motor: Moving to -0.168904 mm, started at -0.175617 mm, distance = 6.71 um
17-03-18 05:01:45.894 -07 000000610 INF: FPGA: Xmit ZDACW 36897\n [Z Motor]
17-03-18 05:01:45.894 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:01:45.904 -07 000000610 INF: FPGA: 'ZDACW 36897' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:45.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:45.904 -07 000000479 INF: FPGA: Recv ZDACR 36897
17-03-18 05:01:45.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:45.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:46.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.064 -07 000000581 INF: FPGA: Recv ZSGSRD 35577
17-03-18 05:01:46.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.074 -07 000000569 INF: FPGA: Recv ZSGSRD 35579
17-03-18 05:01:46.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.084 -07 000000455 INF: FPGA: Recv ZSGSRD 35584
17-03-18 05:01:46.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.094 -07 000000467 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:01:46.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.104 -07 000000626 INF: FPGA: Recv ZSGSRD 35580
17-03-18 05:01:46.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.114 -07 000000502 INF: FPGA: Recv ZSGSRD 35581
17-03-18 05:01:46.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.124 -07 000000625 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:01:46.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.134 -07 000000474 INF: FPGA: Recv ZSGSRD 35580
17-03-18 05:01:46.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.144 -07 000000382 INF: FPGA: Recv ZSGSRD 35580
17-03-18 05:01:46.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:46.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35581
17-03-18 05:01:46.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:46.164 -07 000000455 INF: FPGA: Recv ZPIEZORD 31324
17-03-18 05:01:46.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:46.174 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.4 V.
17-03-18 05:01:46.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35582 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35580 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35577 (-168.0 uncal um), Max = 35589 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:01:46.174 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35582, posNoise = 7, negNoise = 5
17-03-18 05:01:46.174 -07 000000610 INF: Z Motor: After move to -0.168904, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:46.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:01:46.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:46.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:46.174 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:46.174 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:46.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:46.174 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:46.174 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:46.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:01:46.174 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:46.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:46.174 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:46.174 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:46.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:01:46.184 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:46.184 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:01:46.184 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:46.194 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:01:46.194 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:01:46.194 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:01:46.194 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:01:46.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37073 150\n [Camera]
17-03-18 05:01:46.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:46.724 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:46.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:46.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:46.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:46.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:46.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:46.834 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:46.834 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:46.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:01:46.834 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:46.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:01:47.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37073 816
17-03-18 05:01:47.164 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:47.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:01:47.204 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:01:47.204 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:47.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:01:47.204 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:01:47.204 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:47.214 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:47.214 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:01:47.214 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:01:47.224 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:01:47.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:47.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:47.374 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:47.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:47.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:47.384 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:47.384 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:47.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:01:47.384 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:47.384 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:01:47.564 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:01:47.564 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:47.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37073 150' command took 2 ms to send, 1368 ms to get response, and 1373 ms overall
17-03-18 05:01:47.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:47.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168909668439273. ------
17-03-18 05:01:47.694 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17536 mm
17-03-18 05:01:47.694 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:47.694 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:01:47.694 -07 000000502 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:01:47.694 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38307, sync = True, waitForSettling = False)
17-03-18 05:01:47.694 -07 000000608 INF: Z Motor: Moving to -0.175358 mm, started at -0.168910 mm, distance = -6.45 um
17-03-18 05:01:47.704 -07 000000608 INF: FPGA: Xmit ZDACW 38307\n [Z Motor]
17-03-18 05:01:47.704 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:01:47.714 -07 000000608 INF: FPGA: 'ZDACW 38307' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:01:47.714 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:47.714 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:47.724 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:01:47.734 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:47.734 -07 000000625 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:01:47.744 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 45 ms overall
17-03-18 05:01:47.744 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:47.744 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:47.744 -07 000000606 INF: FPGA: Recv ZDACR 38307
17-03-18 05:01:47.744 -07 000000502 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:47.744 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:01:47.754 -07 000000608 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:01:47.754 -07 000000608 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:01:47.754 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:47.774 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:47.774 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:01:47.774 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:01:47.774 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:47.774 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:47.774 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:01:47.774 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:01:47.774 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:01:47.774 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:47.784 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:47.794 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:01:47.954 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:47.954 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 05:01:48.014 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.012614,
17-03-18 05:01:48.144 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:01:48.144 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-18 05:01:48.194 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:48.204 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:01:48.204 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:01:48.204 -07 000000502 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:48.204 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:01:48.204 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-18 05:01:49.154 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:49.154 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:01:49.164 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.164 -07 000000502 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:49.194 -07 000000502 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:49.194 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:01:49.194 -07 000000502 INF: Y Motor: Moved to 66.5386 after 1499 ms (table move)
17-03-18 05:01:49.194 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175358 mm (DAC = 38307)
17-03-18 05:01:49.194 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.204 -07 000000447 INF: FPGA: Recv ZSGSRD 36587
17-03-18 05:01:49.204 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:01:49.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.204 -07 000000608 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:01:49.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.214 -07 000000467 INF: FPGA: Recv ZSGSRD 36589
17-03-18 05:01:49.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.224 -07 000000579 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:01:49.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.234 -07 000000512 INF: FPGA: Recv ZSGSRD 36587
17-03-18 05:01:49.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.244 -07 000000447 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:01:49.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.254 -07 000000502 INF: FPGA: Recv ZSGSRD 36585
17-03-18 05:01:49.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.264 -07 000000424 INF: FPGA: Recv ZSGSRD 36578
17-03-18 05:01:49.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.274 -07 000000467 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:01:49.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:49.284 -07 000000569 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:01:49.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.294 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:49.294 -07 000000447 INF: FPGA: Recv ZPIEZORD 32715
17-03-18 05:01:49.304 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:49.304 -07 000000626 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.845 V. Piezo Error = -8.6 V.
17-03-18 05:01:49.304 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36587 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36587 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36578 (-174.4 uncal um), Max = 36593 (-174.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:01:49.304 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36587, posNoise = 6, negNoise = 9
17-03-18 05:01:49.304 -07 000000626 INF: Z Motor: After move to -0.175358, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:49.304 -07 000000626 INF: Z Motor: Settle wait time = 1502 ms, measure time = 103 ms (allowed 150 ms), total time = 1605 ms
17-03-18 05:01:49.304 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:49.354 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1658 ms
17-03-18 05:01:49.354 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:49.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:49.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:49.354 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:49.354 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:49.354 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:49.354 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:49.354 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:49.354 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:49.364 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:49.364 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:49.364 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:01:49.364 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:01:49.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:49.414 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:49.714 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:49.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:49.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:49.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:01:49.754 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:49.754 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:49.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:01:49.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:01:49.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:49.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:49.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:01:49.854 -07 000000502 INF: Autofocus start
17-03-18 05:01:49.854 -07 000000502 INF: MeasureProfile start
17-03-18 05:01:49.854 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:49.854 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:49.864 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:49.864 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:49.864 -07 000000502 INF: MeasureProfile done
17-03-18 05:01:49.864 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:01:49.864 -07 000000502 INF: Autofocus finished
17-03-18 05:01:50.064 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:50.064 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:50.064 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175366001641743. ----------
17-03-18 05:01:50.074 -07 000000610 INF: Cycle	132	Tile	9	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:50.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-18 05:01:50.074 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.175366 mm, distance = 6.89 um
17-03-18 05:01:50.074 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-18 05:01:50.074 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:01:50.084 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:01:50.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:50.084 -07 000000502 INF: FPGA: Recv ZDACR 36804
17-03-18 05:01:50.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:50.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:01:50.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:50.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.254 -07 000000424 INF: FPGA: Recv ZSGSRD 35521
17-03-18 05:01:50.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.264 -07 000000474 INF: FPGA: Recv ZSGSRD 35512
17-03-18 05:01:50.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.274 -07 000000479 INF: FPGA: Recv ZSGSRD 35515
17-03-18 05:01:50.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.284 -07 000000447 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:01:50.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.294 -07 000000579 INF: FPGA: Recv ZSGSRD 35519
17-03-18 05:01:50.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.304 -07 000000461 INF: FPGA: Recv ZSGSRD 35514
17-03-18 05:01:50.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.314 -07 000000618 INF: FPGA: Recv ZSGSRD 35514
17-03-18 05:01:50.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.324 -07 000000608 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:01:50.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:50.334 -07 000000502 INF: FPGA: Recv ZSGSRD 35515
17-03-18 05:01:50.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:50.344 -07 000000625 INF: FPGA: Recv ZPIEZORD 31261
17-03-18 05:01:50.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:50.354 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.4 V.
17-03-18 05:01:50.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35516 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35512 (-167.6 uncal um), Max = 35521 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:01:50.354 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35516, posNoise = 5, negNoise = 4
17-03-18 05:01:50.354 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:50.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:01:50.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:50.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:50.354 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:50.354 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:50.354 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:50.354 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:50.354 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:50.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:50.354 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:50.354 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:50.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:50.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:50.364 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:50.364 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:50.364 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:01:50.364 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:50.364 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:01:50.364 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:01:50.374 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:01:50.374 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:01:50.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36980 150\n [Camera]
17-03-18 05:01:50.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:51.004 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:51.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:51.004 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:51.004 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:51.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:51.004 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:51.014 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:51.014 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:01:51.014 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:51.014 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:01:51.194 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36980 816
17-03-18 05:01:51.344 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:51.404 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:01:51.404 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:01:51.404 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:51.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:01:51.404 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:01:51.404 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:51.414 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:51.414 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:01:51.414 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:51.414 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:01:51.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:51.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:51.554 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:51.554 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:51.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:01:51.554 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:51.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:51.554 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:51.554 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:51.554 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:01:51.724 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:51.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:51.744 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:01:51.744 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:51.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36980 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-18 05:01:51.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:51.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168485670437917. ------
17-03-18 05:01:51.754 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:51.754 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17528 mm
17-03-18 05:01:51.754 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:51.754 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:51.754 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38290, sync = True, waitForSettling = False)
17-03-18 05:01:51.754 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:01:51.754 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:01:51.754 -07 000000424 INF: Z Motor: Moving to -0.175280 mm, started at -0.168486 mm, distance = -6.79 um
17-03-18 05:01:51.764 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:01:51.764 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:51.764 -07 000000581 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:01:51.774 -07 000000424 INF: FPGA: Xmit ZDACW 38290\n [Z Motor]
17-03-18 05:01:51.774 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:01:51.774 -07 000000606 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:51.774 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:51.774 -07 000000606 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:01:51.774 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:01:51.784 -07 000000424 INF: FPGA: 'ZDACW 38290' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:01:51.784 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:51.794 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:51.804 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:51.804 -07 000000579 INF: FPGA: Recv ZDACR 38290
17-03-18 05:01:51.814 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:01:51.814 -07 000000424 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:01:51.954 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:01:51.954 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:01:51.954 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:51.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:01:51.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:01:51.954 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:51.964 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:51.964 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:51.964 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:01:51.964 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:01:51.984 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:51.984 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:01:52.164 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:01:52.164 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:01:52.214 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:52.224 -07 000000474 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:01:52.224 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:01:52.224 -07 000000606 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:52.224 -07 000000606 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:01:52.224 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:01:53.174 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:53.174 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:01:53.184 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:53.184 -07 000000606 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:53.214 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:53.214 -07 000000606 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:01:53.214 -07 000000606 INF: Y Motor: Moved to 67.3711 after 1455 ms (table move)
17-03-18 05:01:53.214 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175280 mm (DAC = 38290)
17-03-18 05:01:53.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.214 -07 000000625 INF: FPGA: Recv ZSGSRD 36583
17-03-18 05:01:53.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:01:53.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.224 -07 000000581 INF: FPGA: Recv ZSGSRD 36575
17-03-18 05:01:53.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.234 -07 000000382 INF: FPGA: Recv ZSGSRD 36580
17-03-18 05:01:53.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.244 -07 000000455 INF: FPGA: Recv ZSGSRD 36571
17-03-18 05:01:53.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.254 -07 000000467 INF: FPGA: Recv ZSGSRD 36576
17-03-18 05:01:53.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.264 -07 000000502 INF: FPGA: Recv ZSGSRD 36573
17-03-18 05:01:53.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36574
17-03-18 05:01:53.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.284 -07 000000382 INF: FPGA: Recv ZSGSRD 36581
17-03-18 05:01:53.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.294 -07 000000455 INF: FPGA: Recv ZSGSRD 36575
17-03-18 05:01:53.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:53.304 -07 000000447 INF: FPGA: Recv ZSGSRD 36581
17-03-18 05:01:53.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.314 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:53.314 -07 000000512 INF: FPGA: Recv ZPIEZORD 32656
17-03-18 05:01:53.324 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:53.324 -07 000000626 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.7 V.
17-03-18 05:01:53.324 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36577 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36576 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36571 (-174.4 uncal um), Max = 36583 (-174.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:01:53.324 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36577, posNoise = 6, negNoise = 6
17-03-18 05:01:53.324 -07 000000626 INF: Z Motor: After move to -0.175280, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:53.324 -07 000000626 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:01:53.324 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:53.374 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:01:53.374 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:53.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:53.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:53.374 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:53.374 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:53.374 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:53.374 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:53.384 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:01:53.384 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:53.384 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:53.384 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:53.394 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:01:53.394 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:01:53.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:53.434 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.96762,
17-03-18 05:01:53.444 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:53.744 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:53.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:53.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:53.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:01:53.784 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:53.784 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:53.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:01:53.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:01:53.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:53.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:53.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:01:53.884 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:53.884 -07 000000461 INF: Autofocus start
17-03-18 05:01:53.884 -07 000000461 INF: MeasureProfile start
17-03-18 05:01:53.884 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:53.894 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:53.894 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:53.894 -07 000000461 INF: MeasureProfile done
17-03-18 05:01:53.894 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:01:53.894 -07 000000461 INF: Autofocus finished
17-03-18 05:01:54.094 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:54.094 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:54.094 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175301759520325. ----------
17-03-18 05:01:54.094 -07 000000610 INF: Cycle	132	Tile	10	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:54.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-18 05:01:54.104 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.175302 mm, distance = 6.82 um
17-03-18 05:01:54.104 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-18 05:01:54.104 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:01:54.114 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:54.114 -07 000000608 INF: FPGA: Recv ZDACR 36804
17-03-18 05:01:54.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:54.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.274 -07 000000501 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:01:54.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35517
17-03-18 05:01:54.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.294 -07 000000569 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:01:54.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35515
17-03-18 05:01:54.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.314 -07 000000455 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:01:54.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:01:54.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.334 -07 000000480 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:01:54.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 05:01:54.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.344 -07 000000474 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:01:54.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:01:54.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.354 -07 000000581 INF: FPGA: Recv ZSGSRD 35514
17-03-18 05:01:54.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:54.364 -07 000000447 INF: FPGA: Recv ZSGSRD 35513
17-03-18 05:01:54.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:54.374 -07 000000626 INF: FPGA: Recv ZPIEZORD 31252
17-03-18 05:01:54.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:54.384 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.4 V.
17-03-18 05:01:54.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35516 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35513 (-167.6 uncal um), Max = 35518 (-167.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:01:54.384 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35516, posNoise = 2, negNoise = 3
17-03-18 05:01:54.384 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:54.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:01:54.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:54.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:54.384 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:54.384 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:54.384 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:54.384 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:54.384 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:54.384 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:54.384 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:01:54.384 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:54.384 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:54.384 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:54.394 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:01:54.394 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:54.394 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:01:54.394 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:54.394 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:01:54.394 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:01:54.404 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:01:54.404 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:01:54.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36981 150\n [Camera]
17-03-18 05:01:54.604 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:55.034 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:01:55.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:01:55.034 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:55.034 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:55.034 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:01:55.034 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:01:55.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:01:55.034 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:55.034 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:55.034 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:01:55.224 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36981 816
17-03-18 05:01:55.374 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:55.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:01:55.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:01:55.414 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:01:55.414 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:55.414 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:01:55.414 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:55.424 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:01:55.424 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:01:55.424 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:01:55.434 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:01:55.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:55.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:55.584 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:55.584 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:55.584 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:01:55.584 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:55.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:55.594 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:55.594 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:55.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:01:55.774 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:01:55.774 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:55.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36981 150' command took 2 ms to send, 1366 ms to get response, and 1372 ms overall
17-03-18 05:01:55.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:55.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168485670437917. ------
17-03-18 05:01:55.784 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:55.784 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17485 mm
17-03-18 05:01:55.784 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:01:55.784 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:01:55.784 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:01:55.784 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38195, sync = True, waitForSettling = False)
17-03-18 05:01:55.784 -07 000000382 INF: Z Motor: Moving to -0.174846 mm, started at -0.168486 mm, distance = -6.36 um
17-03-18 05:01:55.784 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:55.794 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:01:55.794 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:55.794 -07 000000625 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:01:55.804 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:01:55.804 -07 000000455 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:55.804 -07 000000382 INF: FPGA: Xmit ZDACW 38195\n [Z Motor]
17-03-18 05:01:55.804 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:01:55.804 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:01:55.804 -07 000000455 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:01:55.814 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:01:55.934 -07 000000382 INF: FPGA: 'ZDACW 38195' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:01:55.944 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:01:55.954 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:55.954 -07 000000479 INF: FPGA: Recv ZDACR 38195
17-03-18 05:01:55.964 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:01:55.964 -07 000000382 INF: Z Motor: MoveAbsStepped took 174 ms (did NOT wait for settling yet))
17-03-18 05:01:55.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:01:55.984 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:01:55.984 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:55.984 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:01:55.984 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:01:55.984 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:55.984 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:01:55.984 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:01:55.984 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:01:55.994 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:01:56.134 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:01:56.134 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 123 ms to send, 196 ms to get response, and 345 ms overall
17-03-18 05:01:56.314 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:01:56.314 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 514 ms overall
17-03-18 05:01:56.364 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:56.374 -07 000000625 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:01:56.374 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:01:56.374 -07 000000455 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:56.374 -07 000000455 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:01:56.374 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 514 ms, distance = 0.842 mm, average velocity = 1.637 mm/sec
17-03-18 05:01:56.724 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:01:56.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:01:57.324 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:01:57.324 -07 000000579 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:01:57.334 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:01:57.334 -07 000000455 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:01:57.364 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:01:57.364 -07 000000455 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:01:57.364 -07 000000455 INF: Y Motor: Moved to 68.2046 after 1575 ms (table move)
17-03-18 05:01:57.364 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174846 mm (DAC = 38195)
17-03-18 05:01:57.364 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.364 -07 000000625 INF: FPGA: Recv ZSGSRD 36507
17-03-18 05:01:57.374 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:01:57.374 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36509
17-03-18 05:01:57.384 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.384 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36503
17-03-18 05:01:57.394 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.394 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.394 -07 000000502 INF: FPGA: Recv ZSGSRD 36502
17-03-18 05:01:57.404 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.404 -07 000000479 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:01:57.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.414 -07 000000455 INF: FPGA: Recv ZSGSRD 36502
17-03-18 05:01:57.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.424 -07 000000569 INF: FPGA: Recv ZSGSRD 36500
17-03-18 05:01:57.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.434 -07 000000447 INF: FPGA: Recv ZSGSRD 36508
17-03-18 05:01:57.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.444 -07 000000480 INF: FPGA: Recv ZSGSRD 36510
17-03-18 05:01:57.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:57.454 -07 000000512 INF: FPGA: Recv ZSGSRD 36515
17-03-18 05:01:57.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.464 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:57.464 -07 000000606 INF: FPGA: Recv ZPIEZORD 32574
17-03-18 05:01:57.474 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:57.474 -07 000000608 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.7 V.
17-03-18 05:01:57.474 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36515 (-174.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:01:57.474 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 9, negNoise = 6
17-03-18 05:01:57.474 -07 000000608 INF: Z Motor: After move to -0.174846, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:57.474 -07 000000608 INF: Z Motor: Settle wait time = 1578 ms, measure time = 107 ms (allowed 150 ms), total time = 1685 ms
17-03-18 05:01:57.474 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:01:57.524 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 05:01:57.524 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:01:57.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:57.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:57.524 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:57.524 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:57.524 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:01:57.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:57.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:01:57.524 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:01:57.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:01:57.534 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:01:57.544 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:01:57.544 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:01:57.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:01:57.594 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:01:57.894 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:01:57.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:01:57.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:01:57.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:01:57.934 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:01:57.934 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:01:57.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 05:01:58.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:01:58.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:58.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:01:58.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:01:58.034 -07 000000480 INF: Autofocus start
17-03-18 05:01:58.034 -07 000000480 INF: MeasureProfile start
17-03-18 05:01:58.034 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:58.034 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:01:58.044 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:01:58.044 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:01:58.044 -07 000000480 INF: MeasureProfile done
17-03-18 05:01:58.044 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:01:58.044 -07 000000480 INF: Autofocus finished
17-03-18 05:01:58.244 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:01:58.244 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:01:58.244 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.17484564045826. ----------
17-03-18 05:01:58.254 -07 000000610 INF: Cycle	132	Tile	11	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:01:58.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36692, sync = True, waitForSettling = True)
17-03-18 05:01:58.254 -07 000000610 INF: Z Motor: Moving to -0.167965 mm, started at -0.174846 mm, distance = 6.88 um
17-03-18 05:01:58.254 -07 000000610 INF: FPGA: Xmit ZDACW 36692\n [Z Motor]
17-03-18 05:01:58.254 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:01:58.264 -07 000000610 INF: FPGA: 'ZDACW 36692' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:01:58.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:01:58.264 -07 000000579 INF: FPGA: Recv ZDACR 36692
17-03-18 05:01:58.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:01:58.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.424 -07 000000626 INF: FPGA: Recv ZSGSRD 35439
17-03-18 05:01:58.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.434 -07 000000606 INF: FPGA: Recv ZSGSRD 35430
17-03-18 05:01:58.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.444 -07 000000569 INF: FPGA: Recv ZSGSRD 35442
17-03-18 05:01:58.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35438
17-03-18 05:01:58.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35440
17-03-18 05:01:58.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.484 -07 000000569 INF: FPGA: Recv ZSGSRD 35433
17-03-18 05:01:58.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:58.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35434
17-03-18 05:01:58.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:58.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.524 -07 000000455 INF: FPGA: Recv ZSGSRD 35443
17-03-18 05:01:58.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:58.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.534 -07 000000474 INF: FPGA: Recv ZSGSRD 35439
17-03-18 05:01:58.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:01:58.554 -07 000000480 INF: FPGA: Recv ZSGSRD 35434
17-03-18 05:01:58.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:01:58.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:01:58.564 -07 000000626 INF: FPGA: Recv ZPIEZORD 31143
17-03-18 05:01:58.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:01:58.574 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.5 V.
17-03-18 05:01:58.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35437 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35438 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35430 (-167.1 uncal um), Max = 35443 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:01:58.574 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35437, posNoise = 6, negNoise = 7
17-03-18 05:01:58.574 -07 000000610 INF: Z Motor: After move to -0.167965, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:01:58.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms)
17-03-18 05:01:58.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:01:58.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:01:58.574 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:01:58.574 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:01:58.574 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:01:58.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:01:58.574 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:01:58.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:01:58.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:01:58.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:01:58.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:01:58.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:01:58.584 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:01:58.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:01:58.584 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:01:58.584 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:01:58.594 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:01:58.594 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:01:58.594 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:01:58.594 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:01:58.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36869 150\n [Camera]
17-03-18 05:01:58.794 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:01:58.814 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.975845,
17-03-18 05:01:59.224 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 625
17-03-18 05:01:59.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 625
17-03-18 05:01:59.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:59.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 625
17-03-18 05:01:59.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 625
17-03-18 05:01:59.234 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:59.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:59.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:01:59.234 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:59.244 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:01:59.414 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36869 816
17-03-18 05:01:59.564 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:01:59.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:01:59.614 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:01:59.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:59.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:01:59.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:01:59.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:01:59.614 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:01:59.614 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:01:59.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:01:59.624 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:01:59.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:01:59.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:01:59.774 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:01:59.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:01:59.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:01:59.774 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:01:59.784 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:01:59.784 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:01:59.784 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:01:59.784 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:01:59.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:01:59.964 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:01:59.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36869 150' command took 2 ms to send, 1366 ms to get response, and 1372 ms overall
17-03-18 05:01:59.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:01:59.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.167978157678718. ------
17-03-18 05:01:59.974 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:01:59.974 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17460 mm
17-03-18 05:01:59.974 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:00.094 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:00.094 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:02:00.094 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:00.094 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38142, sync = True, waitForSettling = False)
17-03-18 05:02:00.094 -07 000000479 INF: Z Motor: Moving to -0.174603 mm, started at -0.167978 mm, distance = -6.62 um
17-03-18 05:02:00.094 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:02:00.094 -07 000000606 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:02:00.104 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:00.104 -07 000000480 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:02:00.114 -07 000000479 INF: FPGA: Xmit ZDACW 38142\n [Z Motor]
17-03-18 05:02:00.114 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:02:00.114 -07 000000606 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:00.114 -07 000000606 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:00.114 -07 000000606 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:02:00.114 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:02:00.124 -07 000000479 INF: FPGA: 'ZDACW 38142' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:02:00.124 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:00.124 -07 000000581 INF: FPGA: Recv ZDACR 38142
17-03-18 05:02:00.134 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:00.134 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:00.134 -07 000000479 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 05:02:00.164 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:02:00.164 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:02:00.164 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:00.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:02:00.174 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:02:00.174 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:00.174 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:00.174 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:02:00.174 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:00.184 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:02:00.294 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:00.294 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 05:02:00.504 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:02:00.504 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:02:00.554 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:00.554 -07 000000626 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:02:00.564 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:00.564 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:00.564 -07 000000606 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:02:00.564 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 05:02:01.514 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:01.514 -07 000000618 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:02:01.524 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:01.524 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:01.554 -07 000000606 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:01.554 -07 000000606 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:01.554 -07 000000606 INF: Y Motor: Moved to 69.0264 after 1455 ms (table move)
17-03-18 05:02:01.554 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174603 mm (DAC = 38142)
17-03-18 05:02:01.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.554 -07 000000501 INF: FPGA: Recv ZSGSRD 36473
17-03-18 05:02:01.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:01.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.564 -07 000000512 INF: FPGA: Recv ZSGSRD 36472
17-03-18 05:02:01.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.574 -07 000000579 INF: FPGA: Recv ZSGSRD 36467
17-03-18 05:02:01.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.584 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.584 -07 000000424 INF: FPGA: Recv ZSGSRD 36465
17-03-18 05:02:01.594 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.594 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.594 -07 000000606 INF: FPGA: Recv ZSGSRD 36468
17-03-18 05:02:01.604 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.604 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.604 -07 000000474 INF: FPGA: Recv ZSGSRD 36465
17-03-18 05:02:01.614 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.614 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36479
17-03-18 05:02:01.624 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.624 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.624 -07 000000579 INF: FPGA: Recv ZSGSRD 36462
17-03-18 05:02:01.634 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.634 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.634 -07 000000608 INF: FPGA: Recv ZSGSRD 36473
17-03-18 05:02:01.644 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.644 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:01.644 -07 000000606 INF: FPGA: Recv ZSGSRD 36476
17-03-18 05:02:01.654 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.654 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:01.654 -07 000000474 INF: FPGA: Recv ZPIEZORD 32538
17-03-18 05:02:01.664 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:01.664 -07 000000461 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.820 V. Piezo Error = -8.7 V.
17-03-18 05:02:01.664 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36470 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36470 (-173.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36462 (-173.7 uncal um), Max = 36479 (-173.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:02:01.664 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36470, posNoise = 9, negNoise = 8
17-03-18 05:02:01.664 -07 000000461 INF: Z Motor: After move to -0.174603, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:01.664 -07 000000461 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 05:02:01.664 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:01.714 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 05:02:01.714 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:01.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:01.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:01.714 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:01.714 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:01.714 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:01.714 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:01.714 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:01.714 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:01.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:01.724 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:01.724 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:01.724 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:02:01.724 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:02:01.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:01.774 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:02.074 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:02.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:02.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:02.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:02.114 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:02.114 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:02.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:02:02.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:02:02.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:02.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:02.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:02:02.214 -07 000000618 INF: Autofocus start
17-03-18 05:02:02.214 -07 000000618 INF: MeasureProfile start
17-03-18 05:02:02.214 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:02.214 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:02.224 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:02.224 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:02.224 -07 000000618 INF: MeasureProfile done
17-03-18 05:02:02.224 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:02:02.224 -07 000000618 INF: Autofocus finished
17-03-18 05:02:02.424 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:02.424 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:02:02.434 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174614368821157. ----------
17-03-18 05:02:02.434 -07 000000610 INF: Cycle	132	Tile	12	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:02.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36657, sync = True, waitForSettling = True)
17-03-18 05:02:02.434 -07 000000610 INF: Z Motor: Moving to -0.167805 mm, started at -0.174614 mm, distance = 6.81 um
17-03-18 05:02:02.434 -07 000000610 INF: FPGA: Xmit ZDACW 36657\n [Z Motor]
17-03-18 05:02:02.434 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:02:02.444 -07 000000610 INF: FPGA: 'ZDACW 36657' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:02.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:02.444 -07 000000474 INF: FPGA: Recv ZDACR 36657
17-03-18 05:02:02.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35413
17-03-18 05:02:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:02.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.614 -07 000000626 INF: FPGA: Recv ZSGSRD 35412
17-03-18 05:02:02.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35413
17-03-18 05:02:02.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.634 -07 000000501 INF: FPGA: Recv ZSGSRD 35409
17-03-18 05:02:02.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35410
17-03-18 05:02:02.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.654 -07 000000467 INF: FPGA: Recv ZSGSRD 35410
17-03-18 05:02:02.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.664 -07 000000626 INF: FPGA: Recv ZSGSRD 35411
17-03-18 05:02:02.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.674 -07 000000579 INF: FPGA: Recv ZSGSRD 35410
17-03-18 05:02:02.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.684 -07 000000424 INF: FPGA: Recv ZSGSRD 35411
17-03-18 05:02:02.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:02.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35414
17-03-18 05:02:02.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:02.704 -07 000000608 INF: FPGA: Recv ZPIEZORD 31090
17-03-18 05:02:02.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:02.714 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.5 V.
17-03-18 05:02:02.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35411 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35411 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35409 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:02:02.714 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35411, posNoise = 3, negNoise = 2
17-03-18 05:02:02.714 -07 000000610 INF: Z Motor: After move to -0.167805, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:02.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:02:02.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:02.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:02.714 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:02.714 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:02.714 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:02.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:02.714 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:02.714 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:02.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:02.714 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:02.714 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:02.714 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:02.724 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:02.724 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:02.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:02:02.724 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:02.734 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:02:02.734 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:02:02.734 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:02:02.734 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:02:02.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36834 150\n [Camera]
17-03-18 05:02:02.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:03.364 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:03.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:03.364 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:03.364 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:03.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:03.374 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:03.374 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:03.374 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:03.374 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:03.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:03.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36834 816
17-03-18 05:02:03.704 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:03.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:02:03.754 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:02:03.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:03.754 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:02:03.754 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:02:03.754 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:03.754 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:03.754 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:03.754 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:02:03.764 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:02:03.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:03.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:03.914 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:03.914 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:03.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:02:03.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:03.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:03.924 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:03.924 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:03.924 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:02:04.104 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:04.104 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:04.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36834 150' command took 2 ms to send, 1368 ms to get response, and 1373 ms overall
17-03-18 05:02:04.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:04.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167811128163032. ------
17-03-18 05:02:04.114 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:04.114 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17420 mm
17-03-18 05:02:04.114 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:04.114 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38053, sync = True, waitForSettling = False)
17-03-18 05:02:04.114 -07 000000382 INF: Z Motor: Moving to -0.174195 mm, started at -0.167811 mm, distance = -6.38 um
17-03-18 05:02:04.114 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:02:04.114 -07 000000447 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:02:04.114 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:04.124 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:04.124 -07 000000382 INF: FPGA: Xmit ZDACW 38053\n [Z Motor]
17-03-18 05:02:04.124 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:02:04.134 -07 000000382 INF: FPGA: 'ZDACW 38053' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:02:04.134 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:04.144 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:04.144 -07 000000467 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:02:04.154 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:04.154 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:02:04.154 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:04.154 -07 000000447 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:04.154 -07 000000447 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:02:04.154 -07 000000606 INF: FPGA: Recv ZDACR 38053
17-03-18 05:02:04.164 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:04.164 -07 000000382 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:02:04.164 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:04.224 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.993549,
17-03-18 05:02:04.314 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:02:04.314 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:02:04.314 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:04.314 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:02:04.314 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:02:04.314 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:04.324 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:04.324 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:02:04.324 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:02:04.334 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:02:04.334 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:04.334 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:02:04.534 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:02:04.534 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:02:04.584 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:04.594 -07 000000581 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:02:04.594 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:02:04.594 -07 000000447 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:04.594 -07 000000447 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:02:04.594 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-18 05:02:05.544 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:05.544 -07 000000480 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:02:05.554 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:05.554 -07 000000447 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:05.584 -07 000000447 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:05.584 -07 000000447 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:02:05.584 -07 000000447 INF: Y Motor: Moved to 69.8628 after 1462 ms (table move)
17-03-18 05:02:05.584 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174195 mm (DAC = 38053)
17-03-18 05:02:05.584 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.594 -07 000000467 INF: FPGA: Recv ZSGSRD 36402
17-03-18 05:02:05.594 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:05.594 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.594 -07 000000606 INF: FPGA: Recv ZSGSRD 36415
17-03-18 05:02:05.604 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:02:05.604 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.604 -07 000000626 INF: FPGA: Recv ZSGSRD 36405
17-03-18 05:02:05.614 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.614 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.614 -07 000000455 INF: FPGA: Recv ZSGSRD 36399
17-03-18 05:02:05.624 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.624 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.624 -07 000000502 INF: FPGA: Recv ZSGSRD 36405
17-03-18 05:02:05.634 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.634 -07 000000474 INF: FPGA: Recv ZSGSRD 36403
17-03-18 05:02:05.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.644 -07 000000606 INF: FPGA: Recv ZSGSRD 36406
17-03-18 05:02:05.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.654 -07 000000447 INF: FPGA: Recv ZSGSRD 36405
17-03-18 05:02:05.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.664 -07 000000579 INF: FPGA: Recv ZSGSRD 36405
17-03-18 05:02:05.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.674 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:05.674 -07 000000382 INF: FPGA: Recv ZSGSRD 36412
17-03-18 05:02:05.684 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.684 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:05.684 -07 000000581 INF: FPGA: Recv ZPIEZORD 32451
17-03-18 05:02:05.694 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:05.694 -07 000000501 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.7 V.
17-03-18 05:02:05.694 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36406 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36405 (-173.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36399 (-173.3 uncal um), Max = 36415 (-173.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:02:05.694 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36406, posNoise = 9, negNoise = 7
17-03-18 05:02:05.694 -07 000000501 INF: Z Motor: After move to -0.174195, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:05.694 -07 000000501 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 05:02:05.694 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:05.744 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:02:05.744 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:05.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:05.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:05.744 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:05.744 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:05.744 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:05.744 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:05.744 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:05.744 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:05.754 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:05.754 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:05.764 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:02:05.764 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:02:05.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:05.814 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:06.114 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:06.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:06.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:06.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:02:06.154 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:06.154 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:06.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:02:06.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:02:06.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:06.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:06.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:02:06.254 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:06.254 -07 000000501 INF: Autofocus start
17-03-18 05:02:06.254 -07 000000501 INF: MeasureProfile start
17-03-18 05:02:06.254 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:06.264 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:06.264 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:06.264 -07 000000501 INF: MeasureProfile done
17-03-18 05:02:06.264 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:02:06.264 -07 000000501 INF: Autofocus finished
17-03-18 05:02:06.464 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:06.464 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:06.464 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174203219244084. ----------
17-03-18 05:02:06.464 -07 000000610 INF: Cycle	132	Tile	13	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:06.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36568, sync = True, waitForSettling = True)
17-03-18 05:02:06.474 -07 000000610 INF: Z Motor: Moving to -0.167398 mm, started at -0.174203 mm, distance = 6.81 um
17-03-18 05:02:06.474 -07 000000610 INF: FPGA: Xmit ZDACW 36568\n [Z Motor]
17-03-18 05:02:06.474 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:02:06.484 -07 000000610 INF: FPGA: 'ZDACW 36568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:06.484 -07 000000608 INF: FPGA: Recv ZDACR 36568
17-03-18 05:02:06.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:06.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35347
17-03-18 05:02:06.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:06.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.654 -07 000000501 INF: FPGA: Recv ZSGSRD 35345
17-03-18 05:02:06.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.664 -07 000000480 INF: FPGA: Recv ZSGSRD 35352
17-03-18 05:02:06.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.674 -07 000000479 INF: FPGA: Recv ZSGSRD 35339
17-03-18 05:02:06.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.684 -07 000000447 INF: FPGA: Recv ZSGSRD 35351
17-03-18 05:02:06.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.694 -07 000000626 INF: FPGA: Recv ZSGSRD 35350
17-03-18 05:02:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.704 -07 000000512 INF: FPGA: Recv ZSGSRD 35355
17-03-18 05:02:06.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.714 -07 000000579 INF: FPGA: Recv ZSGSRD 35349
17-03-18 05:02:06.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.724 -07 000000479 INF: FPGA: Recv ZSGSRD 35344
17-03-18 05:02:06.724 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:06.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:06.734 -07 000000579 INF: FPGA: Recv ZSGSRD 35351
17-03-18 05:02:06.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:06.744 -07 000000581 INF: FPGA: Recv ZPIEZORD 31029
17-03-18 05:02:06.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:06.754 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.5 V.
17-03-18 05:02:06.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35350 (-166.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35339 (-166.5 uncal um), Max = 35355 (-166.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:02:06.754 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 7, negNoise = 9
17-03-18 05:02:06.754 -07 000000610 INF: Z Motor: After move to -0.167398, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:06.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:02:06.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:06.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:06.754 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:06.754 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:06.754 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:06.754 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:06.754 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:06.754 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:06.754 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:02:06.754 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:06.754 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:02:06.754 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:06.754 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:06.754 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:06.764 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:06.764 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:06.764 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:02:06.764 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:06.764 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:02:06.764 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:06.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36745 150\n [Camera]
17-03-18 05:02:06.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:07.404 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:07.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:07.404 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:07.404 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:07.404 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:02:07.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:07.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:07.404 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:07.404 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:07.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:02:07.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36745 816
17-03-18 05:02:07.744 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:07.784 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:02:07.784 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:02:07.784 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:07.784 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:02:07.784 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:02:07.784 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:07.784 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:02:07.784 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:02:07.784 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:02:07.794 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:02:07.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:07.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:07.954 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:07.954 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:07.954 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:02:07.954 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:07.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:07.954 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:07.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:07.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:02:08.144 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:08.144 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:08.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36745 150' command took 2 ms to send, 1364 ms to get response, and 1373 ms overall
17-03-18 05:02:08.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:08.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167406402798101. ------
17-03-18 05:02:08.144 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:08.144 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17374 mm
17-03-18 05:02:08.144 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:08.154 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:08.154 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:02:08.154 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:02:08.154 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:02:08.154 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:08.154 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37953, sync = True, waitForSettling = False)
17-03-18 05:02:08.154 -07 000000480 INF: Z Motor: Moving to -0.173738 mm, started at -0.167406 mm, distance = -6.33 um
17-03-18 05:02:08.164 -07 000000480 INF: FPGA: Xmit ZDACW 37953\n [Z Motor]
17-03-18 05:02:08.164 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:02:08.174 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:08.174 -07 000000480 INF: FPGA: 'ZDACW 37953' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:02:08.174 -07 000000626 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:02:08.184 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:02:08.184 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:08.184 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:08.184 -07 000000608 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:02:08.184 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:08.184 -07 000000502 INF: FPGA: Recv ZDACR 37953
17-03-18 05:02:08.194 -07 000000480 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:08.194 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:08.194 -07 000000480 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:02:08.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:02:08.344 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:02:08.344 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:08.354 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:02:08.354 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:02:08.354 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:08.354 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:08.354 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:08.354 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:02:08.354 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:02:08.354 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:02:08.364 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:02:08.564 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:02:08.564 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 256 ms to get response, and 387 ms overall
17-03-18 05:02:08.614 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:08.624 -07 000000424 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:02:08.624 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:02:08.624 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:08.624 -07 000000608 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:02:08.624 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 05:02:09.574 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:09.574 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:02:09.584 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:09.584 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:09.594 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.996267,
17-03-18 05:02:09.614 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:09.614 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:09.614 -07 000000608 INF: Y Motor: Moved to 70.6875 after 1461 ms (table move)
17-03-18 05:02:09.614 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173738 mm (DAC = 37953)
17-03-18 05:02:09.634 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.634 -07 000000479 INF: FPGA: Recv ZSGSRD 36336
17-03-18 05:02:09.644 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:02:09.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.644 -07 000000424 INF: FPGA: Recv ZSGSRD 36330
17-03-18 05:02:09.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.654 -07 000000625 INF: FPGA: Recv ZSGSRD 36337
17-03-18 05:02:09.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.664 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.664 -07 000000608 INF: FPGA: Recv ZSGSRD 36334
17-03-18 05:02:09.674 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.674 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.674 -07 000000480 INF: FPGA: Recv ZSGSRD 36335
17-03-18 05:02:09.684 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.684 -07 000000581 INF: FPGA: Recv ZSGSRD 36344
17-03-18 05:02:09.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.694 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.694 -07 000000382 INF: FPGA: Recv ZSGSRD 36339
17-03-18 05:02:09.704 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.704 -07 000000625 INF: FPGA: Recv ZSGSRD 36339
17-03-18 05:02:09.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.714 -07 000000502 INF: FPGA: Recv ZSGSRD 36333
17-03-18 05:02:09.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:09.724 -07 000000480 INF: FPGA: Recv ZSGSRD 36336
17-03-18 05:02:09.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.734 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:09.734 -07 000000606 INF: FPGA: Recv ZPIEZORD 32361
17-03-18 05:02:09.744 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:09.744 -07 000000579 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.8 V.
17-03-18 05:02:09.744 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36336 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36336 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36330 (-172.8 uncal um), Max = 36344 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:02:09.744 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36336, posNoise = 8, negNoise = 6
17-03-18 05:02:09.744 -07 000000579 INF: Z Motor: After move to -0.173738, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:09.744 -07 000000579 INF: Z Motor: Settle wait time = 1465 ms, measure time = 122 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:02:09.744 -07 000000579 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:09.774 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:02:09.774 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:09.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:09.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:09.774 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:09.774 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:09.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:09.774 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:09.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:02:09.774 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:09.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:09.784 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:09.784 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:02:09.784 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:02:09.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:09.834 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:10.134 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:10.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:10.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:10.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:10.174 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:10.174 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:10.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:02:10.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:02:10.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:10.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:02:10.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:02:10.274 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:10.274 -07 000000382 INF: Autofocus start
17-03-18 05:02:10.274 -07 000000382 INF: MeasureProfile start
17-03-18 05:02:10.284 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:10.284 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:10.284 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:10.294 -07 000000382 INF: MeasureProfile done
17-03-18 05:02:10.294 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:02:10.294 -07 000000382 INF: Autofocus finished
17-03-18 05:02:10.484 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:10.484 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:10.484 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173753524394161. ----------
17-03-18 05:02:10.494 -07 000000610 INF: Cycle	132	Tile	14	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:10.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36486, sync = True, waitForSettling = True)
17-03-18 05:02:10.494 -07 000000610 INF: Z Motor: Moving to -0.167022 mm, started at -0.173754 mm, distance = 6.73 um
17-03-18 05:02:10.494 -07 000000610 INF: FPGA: Xmit ZDACW 36486\n [Z Motor]
17-03-18 05:02:10.494 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:02:10.504 -07 000000610 INF: FPGA: 'ZDACW 36486' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:10.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:10.504 -07 000000512 INF: FPGA: Recv ZDACR 36486
17-03-18 05:02:10.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:10.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.664 -07 000000501 INF: FPGA: Recv ZSGSRD 35290
17-03-18 05:02:10.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:10.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.674 -07 000000382 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:02:10.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.684 -07 000000569 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:02:10.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35285
17-03-18 05:02:10.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:02:10.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.714 -07 000000626 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:02:10.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.724 -07 000000579 INF: FPGA: Recv ZSGSRD 35290
17-03-18 05:02:10.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.734 -07 000000502 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:02:10.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.744 -07 000000479 INF: FPGA: Recv ZSGSRD 35291
17-03-18 05:02:10.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:10.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:02:10.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:10.764 -07 000000501 INF: FPGA: Recv ZPIEZORD 30978
17-03-18 05:02:10.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:10.774 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 05:02:10.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35290 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35290 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35285 (-166.1 uncal um), Max = 35294 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:02:10.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35290, posNoise = 4, negNoise = 5
17-03-18 05:02:10.774 -07 000000610 INF: Z Motor: After move to -0.167022, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:10.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:10.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:10.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:10.774 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:10.774 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:10.774 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:10.774 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:10.774 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:10.774 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:10.774 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:02:10.774 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:10.774 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:10.774 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:10.784 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:02:10.784 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:10.784 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:10.784 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:10.794 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:02:10.794 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:02:10.794 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:02:10.794 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:02:10.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36662 150\n [Camera]
17-03-18 05:02:11.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:11.434 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:11.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:11.434 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:11.434 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:11.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:11.434 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:11.444 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:11.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:11.444 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:11.444 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:11.624 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36662 816
17-03-18 05:02:11.724 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:11.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:11.824 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:02:11.824 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:02:11.824 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:11.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:02:11.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:02:11.824 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:11.824 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:11.834 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:11.834 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:02:11.834 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:02:11.984 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:11.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:11.984 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:11.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:11.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:11.984 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:11.994 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:11.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:02:11.994 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:11.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:02:12.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:12.174 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:12.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36662 150' command took 2 ms to send, 1363 ms to get response, and 1372 ms overall
17-03-18 05:02:12.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:12.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167033798493879. ------
17-03-18 05:02:12.294 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17388 mm
17-03-18 05:02:12.294 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:12.294 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:12.304 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:12.304 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:12.304 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:02:12.304 -07 000000467 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:02:12.304 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:12.304 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37985, sync = True, waitForSettling = False)
17-03-18 05:02:12.304 -07 000000502 INF: Z Motor: Moving to -0.173884 mm, started at -0.167034 mm, distance = -6.85 um
17-03-18 05:02:12.314 -07 000000502 INF: FPGA: Xmit ZDACW 37985\n [Z Motor]
17-03-18 05:02:12.314 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:02:12.324 -07 000000502 INF: FPGA: 'ZDACW 37985' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:02:12.324 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:12.324 -07 000000581 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:02:12.334 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:12.334 -07 000000467 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:12.334 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:12.334 -07 000000569 INF: FPGA: Recv ZDACR 37985
17-03-18 05:02:12.334 -07 000000467 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:12.334 -07 000000467 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:02:12.344 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:12.344 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:12.344 -07 000000502 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:02:12.384 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:02:12.384 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:02:12.384 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:12.384 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:12.384 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:02:12.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:02:12.384 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:02:12.384 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:12.394 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:12.394 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:02:12.504 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:12.504 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:02:12.714 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:02:12.714 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:02:12.764 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:12.774 -07 000000606 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:02:12.774 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:02:12.774 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:12.774 -07 000000467 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:02:12.774 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 05:02:13.724 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:13.724 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:02:13.734 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.734 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:13.764 -07 000000467 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:13.764 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:13.764 -07 000000467 INF: Y Motor: Moved to 71.5181 after 1459 ms (table move)
17-03-18 05:02:13.764 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173884 mm (DAC = 37985)
17-03-18 05:02:13.764 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.764 -07 000000579 INF: FPGA: Recv ZSGSRD 36366
17-03-18 05:02:13.774 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:02:13.774 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.774 -07 000000424 INF: FPGA: Recv ZSGSRD 36362
17-03-18 05:02:13.784 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.784 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36358
17-03-18 05:02:13.794 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.794 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.794 -07 000000502 INF: FPGA: Recv ZSGSRD 36361
17-03-18 05:02:13.804 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.804 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.804 -07 000000608 INF: FPGA: Recv ZSGSRD 36361
17-03-18 05:02:13.814 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.814 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.814 -07 000000606 INF: FPGA: Recv ZSGSRD 36357
17-03-18 05:02:13.824 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.824 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.824 -07 000000424 INF: FPGA: Recv ZSGSRD 36354
17-03-18 05:02:13.834 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.834 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.834 -07 000000618 INF: FPGA: Recv ZSGSRD 36352
17-03-18 05:02:13.844 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.844 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.844 -07 000000569 INF: FPGA: Recv ZSGSRD 36360
17-03-18 05:02:13.854 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.854 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:13.854 -07 000000512 INF: FPGA: Recv ZSGSRD 36362
17-03-18 05:02:13.864 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.864 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:13.864 -07 000000474 INF: FPGA: Recv ZPIEZORD 32387
17-03-18 05:02:13.874 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:13.874 -07 000000480 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.8 V.
17-03-18 05:02:13.874 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36359 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36360 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36352 (-173.0 uncal um), Max = 36366 (-173.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:02:13.874 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36359, posNoise = 7, negNoise = 7
17-03-18 05:02:13.874 -07 000000480 INF: Z Motor: After move to -0.173884, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:13.874 -07 000000480 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:02:13.874 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:13.924 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:02:13.924 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:13.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:13.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:13.924 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:13.924 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:13.924 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:13.924 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:13.924 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:13.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:13.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:13.924 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:13.944 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-18 05:02:13.944 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:02:13.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:13.994 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:02:14.294 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 05:02:14.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 05:02:14.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:14.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:14.334 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:14.334 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:14.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 05:02:14.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:02:14.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:14.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:02:14.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:02:14.434 -07 000000424 INF: Autofocus start
17-03-18 05:02:14.434 -07 000000424 INF: MeasureProfile start
17-03-18 05:02:14.434 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:14.434 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:14.444 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:14.444 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:14.444 -07 000000424 INF: MeasureProfile done
17-03-18 05:02:14.444 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:02:14.444 -07 000000424 INF: Autofocus finished
17-03-18 05:02:14.644 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:14.644 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:02:14.644 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173901281273422. ----------
17-03-18 05:02:14.654 -07 000000610 INF: Cycle	132	Tile	15	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:14.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36482, sync = True, waitForSettling = True)
17-03-18 05:02:14.654 -07 000000610 INF: Z Motor: Moving to -0.167004 mm, started at -0.173901 mm, distance = 6.90 um
17-03-18 05:02:14.674 -07 000000610 INF: FPGA: Xmit ZDACW 36482\n [Z Motor]
17-03-18 05:02:14.674 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:02:14.684 -07 000000610 INF: FPGA: 'ZDACW 36482' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:02:14.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:14.704 -07 000000461 INF: FPGA: Recv ZDACR 36482
17-03-18 05:02:14.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:14.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:14.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.864 -07 000000581 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:02:14.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:14.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:02:14.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.884 -07 000000424 INF: FPGA: Recv ZSGSRD 35284
17-03-18 05:02:14.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.894 -07 000000512 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:02:14.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.904 -07 000000606 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:02:14.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.914 -07 000000625 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:02:14.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:02:14.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.934 -07 000000501 INF: FPGA: Recv ZSGSRD 35286
17-03-18 05:02:14.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.944 -07 000000502 INF: FPGA: Recv ZSGSRD 35287
17-03-18 05:02:14.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:14.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:14.964 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.016692,
17-03-18 05:02:14.964 -07 000000467 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:02:14.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:14.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:14.984 -07 000000501 INF: FPGA: Recv ZPIEZORD 30984
17-03-18 05:02:14.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:14.994 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 05:02:14.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35284 (-166.1 uncal um), Max = 35293 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:02:14.994 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 5, negNoise = 4
17-03-18 05:02:14.994 -07 000000610 INF: Z Motor: After move to -0.167004, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:14.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 335 ms)
17-03-18 05:02:14.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:14.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:14.994 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:14.994 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:14.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:14.994 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:14.994 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:14.994 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:14.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:14.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:14.994 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:14.994 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:15.004 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:15.004 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:15.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:15.004 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:15.014 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:02:15.014 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:02:15.014 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:02:15.014 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:02:15.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36659 150\n [Camera]
17-03-18 05:02:15.214 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:15.654 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:15.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:15.654 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:15.654 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:15.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:15.654 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:15.654 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:15.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:15.664 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:15.664 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:15.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36659 816
17-03-18 05:02:15.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:02:16.034 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:02:16.034 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:02:16.034 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:16.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:02:16.034 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:02:16.034 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:16.034 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:16.034 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:02:16.044 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:02:16.054 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:02:16.204 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:16.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:16.204 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:16.204 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:16.204 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:02:16.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:16.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:16.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:16.204 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:16.204 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:02:16.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:02:16.394 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:16.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36659 150' command took 2 ms to send, 1365 ms to get response, and 1379 ms overall
17-03-18 05:02:16.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:16.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.167020950069596. ------
17-03-18 05:02:16.404 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:16.404 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17330 mm
17-03-18 05:02:16.404 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:16.404 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:16.404 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:02:16.404 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37857, sync = True, waitForSettling = False)
17-03-18 05:02:16.404 -07 000000455 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:02:16.404 -07 000000447 INF: Z Motor: Moving to -0.173298 mm, started at -0.167021 mm, distance = -6.28 um
17-03-18 05:02:16.414 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:02:16.414 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:16.414 -07 000000479 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:02:16.424 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:02:16.424 -07 000000455 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:16.424 -07 000000447 INF: FPGA: Xmit ZDACW 37857\n [Z Motor]
17-03-18 05:02:16.424 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:02:16.424 -07 000000455 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:16.424 -07 000000455 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:02:16.434 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:16.434 -07 000000447 INF: FPGA: 'ZDACW 37857' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:02:16.444 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:16.454 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:16.454 -07 000000606 INF: FPGA: Recv ZDACR 37857
17-03-18 05:02:16.464 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:16.464 -07 000000447 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:02:16.604 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:02:16.604 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:02:16.604 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:16.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:02:16.604 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:02:16.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:16.604 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:16.614 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:02:16.614 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:02:16.614 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:02:16.634 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:16.634 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:02:16.724 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:16.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:16.814 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:02:16.814 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:02:16.864 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:16.874 -07 000000467 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:02:16.874 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:16.874 -07 000000455 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:16.874 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:02:16.874 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.154 mm/sec
17-03-18 05:02:17.824 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:17.824 -07 000000461 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:02:17.834 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.834 -07 000000455 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:17.864 -07 000000455 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:17.864 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:17.864 -07 000000455 INF: Y Motor: Moved to 72.3486 after 1457 ms (table move)
17-03-18 05:02:17.864 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173298 mm (DAC = 37857)
17-03-18 05:02:17.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.864 -07 000000424 INF: FPGA: Recv ZSGSRD 36267
17-03-18 05:02:17.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:17.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.874 -07 000000479 INF: FPGA: Recv ZSGSRD 36272
17-03-18 05:02:17.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.884 -07 000000382 INF: FPGA: Recv ZSGSRD 36262
17-03-18 05:02:17.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.894 -07 000000626 INF: FPGA: Recv ZSGSRD 36273
17-03-18 05:02:17.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.904 -07 000000502 INF: FPGA: Recv ZSGSRD 36265
17-03-18 05:02:17.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.914 -07 000000461 INF: FPGA: Recv ZSGSRD 36262
17-03-18 05:02:17.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.924 -07 000000447 INF: FPGA: Recv ZSGSRD 36267
17-03-18 05:02:17.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.934 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.934 -07 000000455 INF: FPGA: Recv ZSGSRD 36265
17-03-18 05:02:17.944 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.944 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.944 -07 000000569 INF: FPGA: Recv ZSGSRD 36266
17-03-18 05:02:17.954 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:17.954 -07 000000502 INF: FPGA: Recv ZSGSRD 36271
17-03-18 05:02:17.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.964 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:17.964 -07 000000480 INF: FPGA: Recv ZPIEZORD 32301
17-03-18 05:02:17.974 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:17.974 -07 000000501 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.8 V.
17-03-18 05:02:17.974 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36267 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36266 (-172.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36262 (-172.4 uncal um), Max = 36273 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:02:17.974 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36267, posNoise = 6, negNoise = 5
17-03-18 05:02:17.974 -07 000000501 INF: Z Motor: After move to -0.173298, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:17.974 -07 000000501 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:02:17.974 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:18.024 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 05:02:18.024 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:18.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:18.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:18.024 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:18.024 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:18.024 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:18.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:18.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:18.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:18.034 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:18.034 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:18.034 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:02:18.034 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:02:18.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:18.084 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:18.384 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:18.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:18.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:18.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:02:18.424 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:18.424 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:18.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:02:18.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:02:18.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:18.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:02:18.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:02:18.524 -07 000000579 INF: Autofocus start
17-03-18 05:02:18.524 -07 000000579 INF: MeasureProfile start
17-03-18 05:02:18.524 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:18.534 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:18.534 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:18.534 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:18.534 -07 000000579 INF: MeasureProfile done
17-03-18 05:02:18.534 -07 000000579 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:02:18.534 -07 000000579 INF: Autofocus finished
17-03-18 05:02:18.734 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:18.734 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:02:18.734 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.17331025375638. ----------
17-03-18 05:02:18.744 -07 000000610 INF: Cycle	132	Tile	16	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:18.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36390, sync = True, waitForSettling = True)
17-03-18 05:02:18.744 -07 000000610 INF: Z Motor: Moving to -0.166583 mm, started at -0.173310 mm, distance = 6.73 um
17-03-18 05:02:18.744 -07 000000610 INF: FPGA: Xmit ZDACW 36390\n [Z Motor]
17-03-18 05:02:18.744 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:02:18.754 -07 000000610 INF: FPGA: 'ZDACW 36390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:18.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:18.754 -07 000000461 INF: FPGA: Recv ZDACR 36390
17-03-18 05:02:18.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:18.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.914 -07 000000447 INF: FPGA: Recv ZSGSRD 35222
17-03-18 05:02:18.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:18.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.924 -07 000000479 INF: FPGA: Recv ZSGSRD 35226
17-03-18 05:02:18.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.934 -07 000000480 INF: FPGA: Recv ZSGSRD 35221
17-03-18 05:02:18.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.944 -07 000000608 INF: FPGA: Recv ZSGSRD 35214
17-03-18 05:02:18.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.954 -07 000000382 INF: FPGA: Recv ZSGSRD 35214
17-03-18 05:02:18.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.964 -07 000000606 INF: FPGA: Recv ZSGSRD 35225
17-03-18 05:02:18.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.974 -07 000000512 INF: FPGA: Recv ZSGSRD 35228
17-03-18 05:02:18.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.984 -07 000000467 INF: FPGA: Recv ZSGSRD 35220
17-03-18 05:02:18.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:18.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:18.994 -07 000000626 INF: FPGA: Recv ZSGSRD 35222
17-03-18 05:02:19.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:19.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:19.004 -07 000000461 INF: FPGA: Recv ZSGSRD 35225
17-03-18 05:02:19.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:19.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:19.014 -07 000000502 INF: FPGA: Recv ZPIEZORD 30903
17-03-18 05:02:19.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:19.024 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.5 V.
17-03-18 05:02:19.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35222 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35222 (-165.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35214 (-165.7 uncal um), Max = 35228 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:02:19.024 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35222, posNoise = 6, negNoise = 8
17-03-18 05:02:19.024 -07 000000610 INF: Z Motor: After move to -0.166583, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:19.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:02:19.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:19.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:19.024 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:19.024 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:19.024 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:19.024 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:19.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:19.024 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:19.024 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:19.024 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:19.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:19.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:19.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:19.034 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:19.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:19.034 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:19.044 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:02:19.044 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:19.044 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:02:19.044 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:02:19.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36567 150\n [Camera]
17-03-18 05:02:19.244 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:19.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:19.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:19.674 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:19.674 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:19.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:02:19.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:19.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:19.674 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:19.674 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:19.674 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:02:19.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36567 816
17-03-18 05:02:20.014 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:20.054 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:02:20.064 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:02:20.064 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:20.064 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:20.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:02:20.064 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:02:20.064 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:20.064 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:20.064 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:02:20.074 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:02:20.224 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:20.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:20.224 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:20.224 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:20.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:02:20.224 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:20.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:20.224 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:20.224 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:20.224 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:02:20.344 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.024884,
17-03-18 05:02:20.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:20.414 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:20.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36567 150' command took 2 ms to send, 1366 ms to get response, and 1373 ms overall
17-03-18 05:02:20.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:20.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166596952068239. ------
17-03-18 05:02:20.544 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:20.544 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17308 mm
17-03-18 05:02:20.544 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:20.544 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:20.544 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37810, sync = True, waitForSettling = False)
17-03-18 05:02:20.544 -07 000000502 INF: Z Motor: Moving to -0.173083 mm, started at -0.166597 mm, distance = -6.49 um
17-03-18 05:02:20.544 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:02:20.544 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:02:20.554 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:20.554 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:20.554 -07 000000461 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:02:20.564 -07 000000502 INF: FPGA: Xmit ZDACW 37810\n [Z Motor]
17-03-18 05:02:20.564 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:02:20.564 -07 000000480 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:20.564 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:02:20.564 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:20.564 -07 000000480 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:02:20.574 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:20.574 -07 000000502 INF: FPGA: 'ZDACW 37810' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:02:20.584 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:20.594 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:20.594 -07 000000608 INF: FPGA: Recv ZDACR 37810
17-03-18 05:02:20.604 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:20.604 -07 000000502 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:02:20.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:02:20.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:02:20.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:20.624 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:02:20.624 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:02:20.624 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:20.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:20.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:02:20.634 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:02:20.634 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:02:20.774 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:20.774 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:02:20.954 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:02:20.954 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-18 05:02:21.004 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:21.014 -07 000000455 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:02:21.014 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:02:21.014 -07 000000480 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:21.014 -07 000000480 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:02:21.014 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-18 05:02:21.724 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:21.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:21.964 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:21.964 -07 000000461 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:02:21.974 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:21.974 -07 000000480 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:22.004 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:22.004 -07 000000480 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:22.004 -07 000000480 INF: Y Motor: Moved to 73.1753 after 1454 ms (table move)
17-03-18 05:02:22.004 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173083 mm (DAC = 37810)
17-03-18 05:02:22.004 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.004 -07 000000467 INF: FPGA: Recv ZSGSRD 36233
17-03-18 05:02:22.014 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:02:22.014 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.014 -07 000000461 INF: FPGA: Recv ZSGSRD 36235
17-03-18 05:02:22.024 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.024 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.024 -07 000000626 INF: FPGA: Recv ZSGSRD 36233
17-03-18 05:02:22.034 -07 000000625 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.034 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.034 -07 000000569 INF: FPGA: Recv ZSGSRD 36236
17-03-18 05:02:22.044 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.044 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.044 -07 000000382 INF: FPGA: Recv ZSGSRD 36236
17-03-18 05:02:22.054 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.054 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.054 -07 000000447 INF: FPGA: Recv ZSGSRD 36235
17-03-18 05:02:22.064 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.064 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.064 -07 000000467 INF: FPGA: Recv ZSGSRD 36226
17-03-18 05:02:22.074 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.074 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.074 -07 000000626 INF: FPGA: Recv ZSGSRD 36230
17-03-18 05:02:22.084 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.084 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.084 -07 000000579 INF: FPGA: Recv ZSGSRD 36237
17-03-18 05:02:22.094 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.094 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:22.094 -07 000000606 INF: FPGA: Recv ZSGSRD 36227
17-03-18 05:02:22.104 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.104 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:22.104 -07 000000455 INF: FPGA: Recv ZPIEZORD 32248
17-03-18 05:02:22.114 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.114 -07 000000625 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.8 V.
17-03-18 05:02:22.114 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36233 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36234 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36226 (-172.2 uncal um), Max = 36237 (-172.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:02:22.114 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36233, posNoise = 4, negNoise = 7
17-03-18 05:02:22.114 -07 000000625 INF: Z Motor: After move to -0.173083, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:22.114 -07 000000625 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:02:22.114 -07 000000625 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:22.164 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:02:22.164 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:22.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:22.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:22.164 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:22.164 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:22.164 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:22.164 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:22.164 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:22.164 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:22.174 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:22.174 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:22.184 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:02:22.184 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:02:22.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:22.234 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:02:22.534 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:02:22.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:02:22.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:22.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:22.564 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:22.574 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:22.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:02:22.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:02:22.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:22.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:22.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:02:22.674 -07 000000461 INF: Autofocus start
17-03-18 05:02:22.674 -07 000000461 INF: MeasureProfile start
17-03-18 05:02:22.674 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:22.674 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:22.684 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:22.684 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:22.684 -07 000000461 INF: MeasureProfile done
17-03-18 05:02:22.684 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:02:22.684 -07 000000461 INF: Autofocus finished
17-03-18 05:02:22.884 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:22.884 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:22.884 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.17309183054356. ----------
17-03-18 05:02:22.884 -07 000000610 INF: Cycle	132	Tile	17	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:22.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36343, sync = True, waitForSettling = True)
17-03-18 05:02:22.894 -07 000000610 INF: Z Motor: Moving to -0.166368 mm, started at -0.173092 mm, distance = 6.72 um
17-03-18 05:02:22.894 -07 000000610 INF: FPGA: Xmit ZDACW 36343\n [Z Motor]
17-03-18 05:02:22.894 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:02:22.904 -07 000000610 INF: FPGA: 'ZDACW 36343' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:22.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:22.904 -07 000000382 INF: FPGA: Recv ZDACR 36343
17-03-18 05:02:22.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:22.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:23.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.064 -07 000000467 INF: FPGA: Recv ZSGSRD 35187
17-03-18 05:02:23.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:23.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.074 -07 000000626 INF: FPGA: Recv ZSGSRD 35187
17-03-18 05:02:23.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.084 -07 000000569 INF: FPGA: Recv ZSGSRD 35188
17-03-18 05:02:23.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.094 -07 000000424 INF: FPGA: Recv ZSGSRD 35183
17-03-18 05:02:23.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.104 -07 000000579 INF: FPGA: Recv ZSGSRD 35189
17-03-18 05:02:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.114 -07 000000455 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:02:23.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.124 -07 000000461 INF: FPGA: Recv ZSGSRD 35186
17-03-18 05:02:23.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.134 -07 000000569 INF: FPGA: Recv ZSGSRD 35186
17-03-18 05:02:23.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.144 -07 000000581 INF: FPGA: Recv ZSGSRD 35188
17-03-18 05:02:23.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:23.154 -07 000000608 INF: FPGA: Recv ZSGSRD 35190
17-03-18 05:02:23.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:23.164 -07 000000512 INF: FPGA: Recv ZPIEZORD 30861
17-03-18 05:02:23.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:23.174 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.5 V.
17-03-18 05:02:23.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35188 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35188 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35183 (-165.5 uncal um), Max = 35191 (-165.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:02:23.174 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35188, posNoise = 3, negNoise = 5
17-03-18 05:02:23.174 -07 000000610 INF: Z Motor: After move to -0.166368, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:23.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:23.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:23.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:23.174 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:23.174 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:23.174 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:23.174 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:23.174 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:23.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:23.174 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:02:23.174 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:23.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:02:23.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:23.184 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:23.184 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:23.184 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:23.184 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:23.184 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:02:23.194 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:23.194 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:02:23.194 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:02:23.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36519 150\n [Camera]
17-03-18 05:02:23.394 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:02:23.824 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:23.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:23.824 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:23.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:23.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:23.834 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:23.834 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:23.834 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:23.834 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:23.834 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:24.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36519 816
17-03-18 05:02:24.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:24.204 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:02:24.214 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:02:24.214 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:24.214 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:24.214 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:02:24.214 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:02:24.214 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:02:24.214 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:24.214 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:24.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:02:24.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:24.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:24.374 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:24.374 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:24.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:24.374 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:24.384 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:24.384 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:02:24.384 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:24.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:02:24.564 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:02:24.564 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:24.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36519 150' command took 2 ms to send, 1367 ms to get response, and 1372 ms overall
17-03-18 05:02:24.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:24.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.16637852885542. ------
17-03-18 05:02:24.574 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:24.574 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17230 mm
17-03-18 05:02:24.574 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:24.574 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:02:24.694 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:24.694 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37638, sync = True, waitForSettling = False)
17-03-18 05:02:24.694 -07 000000455 INF: Z Motor: Moving to -0.172296 mm, started at -0.166379 mm, distance = -5.92 um
17-03-18 05:02:24.694 -07 000000455 INF: FPGA: Xmit ZDACW 37638\n [Z Motor]
17-03-18 05:02:24.694 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:02:24.694 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:02:24.694 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:02:24.704 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:24.704 -07 000000455 INF: FPGA: 'ZDACW 37638' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:24.704 -07 000000474 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:02:24.714 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:02:24.714 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:24.714 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:24.714 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:24.714 -07 000000569 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:02:24.724 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:24.724 -07 000000474 INF: FPGA: Recv ZDACR 37638
17-03-18 05:02:24.734 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:24.734 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:24.734 -07 000000455 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 05:02:24.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:02:24.774 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:02:24.774 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:24.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:02:24.784 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:02:24.784 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:24.784 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:24.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:02:24.784 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:24.794 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:02:24.914 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:24.914 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 215 ms overall
17-03-18 05:02:25.104 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:02:25.104 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:02:25.144 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:25.154 -07 000000461 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:02:25.154 -07 000000569 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:25.154 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:25.154 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:02:25.154 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.847 mm, average velocity = 2.156 mm/sec
17-03-18 05:02:25.714 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.015368,
17-03-18 05:02:26.104 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:26.104 -07 000000479 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:02:26.114 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:26.114 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:26.134 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:26.134 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:26.134 -07 000000569 INF: Y Motor: Moved to 74.0073 after 1438 ms (table move)
17-03-18 05:02:26.134 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172296 mm (DAC = 37638)
17-03-18 05:02:26.134 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.144 -07 000000467 INF: FPGA: Recv ZSGSRD 36115
17-03-18 05:02:26.144 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:02:26.144 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36105
17-03-18 05:02:26.154 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:26.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.154 -07 000000581 INF: FPGA: Recv ZSGSRD 36114
17-03-18 05:02:26.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.164 -07 000000618 INF: FPGA: Recv ZSGSRD 36111
17-03-18 05:02:26.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.174 -07 000000608 INF: FPGA: Recv ZSGSRD 36109
17-03-18 05:02:26.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.184 -07 000000480 INF: FPGA: Recv ZSGSRD 36109
17-03-18 05:02:26.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.194 -07 000000461 INF: FPGA: Recv ZSGSRD 36110
17-03-18 05:02:26.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.204 -07 000000502 INF: FPGA: Recv ZSGSRD 36108
17-03-18 05:02:26.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.214 -07 000000467 INF: FPGA: Recv ZSGSRD 36112
17-03-18 05:02:26.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:26.224 -07 000000608 INF: FPGA: Recv ZSGSRD 36110
17-03-18 05:02:26.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.234 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:26.234 -07 000000480 INF: FPGA: Recv ZPIEZORD 32105
17-03-18 05:02:26.244 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:26.244 -07 000000447 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.8 V.
17-03-18 05:02:26.244 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36110 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36110 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36105 (-171.4 uncal um), Max = 36115 (-171.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:02:26.244 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36110, posNoise = 5, negNoise = 5
17-03-18 05:02:26.244 -07 000000447 INF: Z Motor: After move to -0.172296, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:26.244 -07 000000447 INF: Z Motor: Settle wait time = 1443 ms, measure time = 101 ms (allowed 150 ms), total time = 1544 ms
17-03-18 05:02:26.244 -07 000000447 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:26.294 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1717 ms
17-03-18 05:02:26.294 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:26.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:26.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:26.294 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:26.294 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:26.294 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:26.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:26.304 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:26.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:26.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:26.304 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:26.304 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:02:26.314 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:02:26.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:26.354 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:26.654 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:26.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:26.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:26.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:26.694 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:26.694 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:26.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:02:26.724 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:26.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:02:26.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:26.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:26.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:02:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:26.794 -07 000000512 INF: Autofocus start
17-03-18 05:02:26.794 -07 000000512 INF: MeasureProfile start
17-03-18 05:02:26.794 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:26.794 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:26.804 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:26.804 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:26.804 -07 000000512 INF: MeasureProfile done
17-03-18 05:02:26.804 -07 000000512 INF: X=-32  Z correction [um]=-0.2344
17-03-18 05:02:26.804 -07 000000512 INF: Autofocus finished
17-03-18 05:02:27.004 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:27.004 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:27.014 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172301652450123. ----------
17-03-18 05:02:27.014 -07 000000610 INF: Cycle	132	Tile	18	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:27.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36100, sync = True, waitForSettling = True)
17-03-18 05:02:27.014 -07 000000610 INF: Z Motor: Moving to -0.165255 mm, started at -0.172302 mm, distance = 7.05 um
17-03-18 05:02:27.014 -07 000000610 INF: FPGA: Xmit ZDACW 36100\n [Z Motor]
17-03-18 05:02:27.014 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:02:27.024 -07 000000610 INF: FPGA: 'ZDACW 36100' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:27.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:27.024 -07 000000606 INF: FPGA: Recv ZDACR 36100
17-03-18 05:02:27.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.184 -07 000000424 INF: FPGA: Recv ZSGSRD 35016
17-03-18 05:02:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.194 -07 000000467 INF: FPGA: Recv ZSGSRD 35014
17-03-18 05:02:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.204 -07 000000480 INF: FPGA: Recv ZSGSRD 35012
17-03-18 05:02:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.214 -07 000000579 INF: FPGA: Recv ZSGSRD 35012
17-03-18 05:02:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.224 -07 000000480 INF: FPGA: Recv ZSGSRD 35014
17-03-18 05:02:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35017
17-03-18 05:02:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.244 -07 000000447 INF: FPGA: Recv ZSGSRD 35015
17-03-18 05:02:27.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.254 -07 000000581 INF: FPGA: Recv ZSGSRD 35016
17-03-18 05:02:27.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35015
17-03-18 05:02:27.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:27.274 -07 000000479 INF: FPGA: Recv ZSGSRD 35017
17-03-18 05:02:27.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:27.284 -07 000000626 INF: FPGA: Recv ZPIEZORD 30670
17-03-18 05:02:27.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:27.294 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.6 V.
17-03-18 05:02:27.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35015 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35015 (-164.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35012 (-164.4 uncal um), Max = 35017 (-164.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:02:27.294 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35015, posNoise = 2, negNoise = 3
17-03-18 05:02:27.294 -07 000000610 INF: Z Motor: After move to -0.165255, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:27.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:27.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:27.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:27.294 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:27.294 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:27.294 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:27.294 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:27.294 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:27.294 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:27.294 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:27.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:27.294 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:02:27.294 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:27.304 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:02:27.304 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:27.304 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:27.304 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:27.314 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:02:27.314 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:02:27.314 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:02:27.314 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:27.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36276 150\n [Camera]
17-03-18 05:02:27.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:27.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:27.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:27.944 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:27.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:27.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:27.944 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:27.954 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:27.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:27.954 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:27.954 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:28.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36276 816
17-03-18 05:02:28.284 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:28.344 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:02:28.344 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:02:28.344 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:28.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:02:28.354 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:02:28.354 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:28.354 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:28.354 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:02:28.354 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:28.364 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:02:28.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:28.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:28.494 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:28.494 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:28.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:02:28.494 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:28.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:28.494 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:28.494 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:28.494 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:02:28.684 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:28.684 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:28.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36276 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-18 05:02:28.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:02:28.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165267140154895. ------
17-03-18 05:02:28.694 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:28.694 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17157 mm
17-03-18 05:02:28.694 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:28.694 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:02:28.694 -07 000000579 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:02:28.694 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37479, sync = True, waitForSettling = False)
17-03-18 05:02:28.694 -07 000000479 INF: Z Motor: Moving to -0.171568 mm, started at -0.165267 mm, distance = -6.30 um
17-03-18 05:02:28.694 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:28.704 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:28.704 -07 000000479 INF: FPGA: Xmit ZDACW 37479\n [Z Motor]
17-03-18 05:02:28.704 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:02:28.714 -07 000000479 INF: FPGA: 'ZDACW 37479' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:02:28.714 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:28.714 -07 000000606 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:02:28.724 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:28.724 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:02:28.724 -07 000000579 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:28.724 -07 000000579 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:28.724 -07 000000579 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:02:28.734 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:28.734 -07 000000618 INF: FPGA: Recv ZDACR 37479
17-03-18 05:02:28.744 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:28.744 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:28.744 -07 000000479 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:02:28.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:02:28.894 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:02:28.894 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:28.894 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:02:28.894 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:02:28.894 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:28.894 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:28.894 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:02:28.894 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:02:28.904 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:02:28.924 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:28.924 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:02:29.114 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:02:29.114 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:02:29.144 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:29.154 -07 000000608 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:02:29.154 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:02:29.154 -07 000000579 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:29.154 -07 000000579 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:02:29.154 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:02:30.104 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:30.104 -07 000000625 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:02:30.114 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:30.114 -07 000000579 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:30.134 -07 000000579 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:30.134 -07 000000579 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:30.134 -07 000000579 INF: Y Motor: Moved to 74.8311 after 1435 ms (table move)
17-03-18 05:02:30.134 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171568 mm (DAC = 37479)
17-03-18 05:02:30.134 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.134 -07 000000424 INF: FPGA: Recv ZSGSRD 35997
17-03-18 05:02:30.144 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:30.144 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.144 -07 000000618 INF: FPGA: Recv ZSGSRD 35995
17-03-18 05:02:30.154 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.154 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.154 -07 000000480 INF: FPGA: Recv ZSGSRD 35991
17-03-18 05:02:30.164 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.164 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.164 -07 000000455 INF: FPGA: Recv ZSGSRD 35997
17-03-18 05:02:30.174 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.174 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.174 -07 000000579 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:02:30.184 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.184 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.184 -07 000000606 INF: FPGA: Recv ZSGSRD 36003
17-03-18 05:02:30.194 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.194 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.194 -07 000000626 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:02:30.204 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.204 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.204 -07 000000625 INF: FPGA: Recv ZSGSRD 35999
17-03-18 05:02:30.214 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.214 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.214 -07 000000479 INF: FPGA: Recv ZSGSRD 35995
17-03-18 05:02:30.224 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:30.224 -07 000000579 INF: FPGA: Recv ZSGSRD 35995
17-03-18 05:02:30.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.234 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:30.234 -07 000000474 INF: FPGA: Recv ZPIEZORD 31936
17-03-18 05:02:30.244 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:30.244 -07 000000569 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -9.0 V.
17-03-18 05:02:30.244 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35998 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35997 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35991 (-170.7 uncal um), Max = 36004 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:02:30.244 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35998, posNoise = 6, negNoise = 7
17-03-18 05:02:30.244 -07 000000569 INF: Z Motor: After move to -0.171568, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:30.244 -07 000000569 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-18 05:02:30.244 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:30.294 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 05:02:30.294 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:30.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:30.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:30.294 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:30.294 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:30.294 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:30.294 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:30.294 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:02:30.294 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:30.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:30.304 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:30.304 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:02:30.304 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:02:30.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:30.354 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:30.654 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:30.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:30.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:30.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:02:30.694 -07 000000608 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:02:30.694 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:30.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 05:02:30.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:02:30.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:30.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:30.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:02:30.794 -07 000000502 INF: Autofocus start
17-03-18 05:02:30.794 -07 000000502 INF: MeasureProfile start
17-03-18 05:02:30.804 -07 000000502 INF: MeasureProfile done
17-03-18 05:02:30.804 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:02:30.804 -07 000000502 INF: Autofocus finished
17-03-18 05:02:30.814 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:30.814 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:30.824 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:02:30.824 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:31.024 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:31.024 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:02:31.024 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171582140690246. ----------
17-03-18 05:02:31.024 -07 000000610 INF: Cycle	132	Tile	19	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:31.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36029, sync = True, waitForSettling = True)
17-03-18 05:02:31.034 -07 000000610 INF: Z Motor: Moving to -0.164930 mm, started at -0.171582 mm, distance = 6.65 um
17-03-18 05:02:31.034 -07 000000610 INF: FPGA: Xmit ZDACW 36029\n [Z Motor]
17-03-18 05:02:31.034 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:02:31.044 -07 000000610 INF: FPGA: 'ZDACW 36029' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:02:31.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:31.044 -07 000000424 INF: FPGA: Recv ZDACR 36029
17-03-18 05:02:31.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:31.084 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.024884,
17-03-18 05:02:31.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.204 -07 000000447 INF: FPGA: Recv ZSGSRD 34959
17-03-18 05:02:31.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.214 -07 000000608 INF: FPGA: Recv ZSGSRD 34972
17-03-18 05:02:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.224 -07 000000461 INF: FPGA: Recv ZSGSRD 34962
17-03-18 05:02:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.234 -07 000000625 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:02:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.244 -07 000000455 INF: FPGA: Recv ZSGSRD 34962
17-03-18 05:02:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.254 -07 000000501 INF: FPGA: Recv ZSGSRD 34964
17-03-18 05:02:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.264 -07 000000479 INF: FPGA: Recv ZSGSRD 34966
17-03-18 05:02:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.274 -07 000000606 INF: FPGA: Recv ZSGSRD 34962
17-03-18 05:02:31.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.284 -07 000000424 INF: FPGA: Recv ZSGSRD 34963
17-03-18 05:02:31.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:31.294 -07 000000626 INF: FPGA: Recv ZSGSRD 34968
17-03-18 05:02:31.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:31.304 -07 000000455 INF: FPGA: Recv ZPIEZORD 30602
17-03-18 05:02:31.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:31.314 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.498 V. Piezo Error = -9.6 V.
17-03-18 05:02:31.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34964 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34962 (-164.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 34957 (-164.0 uncal um), Max = 34972 (-164.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:02:31.314 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34964, posNoise = 8, negNoise = 7
17-03-18 05:02:31.314 -07 000000610 INF: Z Motor: After move to -0.164930, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:31.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:31.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:31.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:31.314 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:31.314 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:31.314 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:31.314 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:31.314 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:31.314 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:31.314 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:31.314 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:31.314 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:31.314 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:31.314 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:31.324 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:31.324 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:31.324 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:31.334 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:02:31.334 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:02:31.334 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:02:31.334 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:02:31.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36206 150\n [Camera]
17-03-18 05:02:31.534 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:31.724 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:31.974 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:31.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:31.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:31.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:31.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:02:31.974 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:31.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:31.974 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:31.974 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:31.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:02:32.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36206 816
17-03-18 05:02:32.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:32.354 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:02:32.354 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:02:32.354 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:32.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:02:32.354 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:02:32.354 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:32.354 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:02:32.364 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:02:32.364 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:02:32.364 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:02:32.524 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:32.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:32.524 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:32.524 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:32.524 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:02:32.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:32.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:32.524 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:32.524 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:32.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:02:32.714 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:02:32.714 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:32.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36206 150' command took 2 ms to send, 1363 ms to get response, and 1373 ms overall
17-03-18 05:02:32.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:02:32.924 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:02:32.924 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:32.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:02:32.924 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:02:32.924 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:32.924 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:32.934 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:02:32.934 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:02:32.934 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:02:32.934 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:02:32.974 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:02:32.974 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:02:33.014 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:02:33.014 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:02:33.014 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:02:33.024 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 05:02:33.024 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:02:33.024 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:02:33.524 -07 000000467 INF: FPGA: Recv EMIN
17-03-18 05:02:33.524 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 05:02:33.524 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:02:33.524 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 05:02:33.534 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:02:33.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:02:33.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164939505335665. ------
17-03-18 05:02:33.534 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:33.534 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13924 mm
17-03-18 05:02:33.534 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:33.534 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:33.534 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:02:33.534 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 05:02:33.534 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30417, sync = True, waitForSettling = False)
17-03-18 05:02:33.534 -07 000000606 INF: Z Motor: Moving to -0.139240 mm, started at -0.164940 mm, distance = 25.70 um
17-03-18 05:02:33.544 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:02:33.544 -07 000000606 INF: FPGA: Xmit ZDACW 30417\n [Z Motor]
17-03-18 05:02:33.544 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:02:33.554 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:33.554 -07 000000606 INF: FPGA: 'ZDACW 30417' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:33.554 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 05:02:33.564 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:33.564 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:02:33.564 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:33.564 -07 000000618 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:02:33.564 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:02:33.574 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:33.574 -07 000000479 INF: FPGA: Recv ZDACR 30417
17-03-18 05:02:33.584 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:02:33.584 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:33.584 -07 000000606 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:02:33.764 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:33.764 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:02:35.204 -07 000000455 INF: FPGA: Recv YMVTO 122702 23904
17-03-18 05:02:35.204 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1640 ms overall
17-03-18 05:02:35.204 -07 000000618 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:02:35.204 -07 000000618 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:02:35.204 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.097 mm/sec
17-03-18 05:02:36.454 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.024884,
17-03-18 05:02:36.724 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:36.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:38.064 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:38.064 -07 000000512 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:02:38.074 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:38.074 -07 000000618 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:38.114 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:38.114 -07 000000618 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:02:38.114 -07 000000618 INF: Y Motor: Moved to 59.9102 after 4572 ms
17-03-18 05:02:38.114 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139240 mm (DAC = 30417)
17-03-18 05:02:38.114 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.114 -07 000000424 INF: FPGA: Recv ZSGSRD 30970
17-03-18 05:02:38.124 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:38.124 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.124 -07 000000501 INF: FPGA: Recv ZSGSRD 30966
17-03-18 05:02:38.134 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.134 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.134 -07 000000502 INF: FPGA: Recv ZSGSRD 30957
17-03-18 05:02:38.144 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30961
17-03-18 05:02:38.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.154 -07 000000382 INF: FPGA: Recv ZSGSRD 30968
17-03-18 05:02:38.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.164 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.164 -07 000000480 INF: FPGA: Recv ZSGSRD 30963
17-03-18 05:02:38.174 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.174 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.174 -07 000000479 INF: FPGA: Recv ZSGSRD 30964
17-03-18 05:02:38.184 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.184 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.184 -07 000000608 INF: FPGA: Recv ZSGSRD 30965
17-03-18 05:02:38.194 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.194 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.194 -07 000000606 INF: FPGA: Recv ZSGSRD 30962
17-03-18 05:02:38.204 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.204 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:38.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30971
17-03-18 05:02:38.214 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.214 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:38.214 -07 000000569 INF: FPGA: Recv ZPIEZORD 26375
17-03-18 05:02:38.224 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:38.224 -07 000000461 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -10.1 V.
17-03-18 05:02:38.224 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30965 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30964 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30957 (-138.4 uncal um), Max = 30971 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:02:38.224 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30965, posNoise = 6, negNoise = 8
17-03-18 05:02:38.224 -07 000000461 INF: Z Motor: After move to -0.139240, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:38.224 -07 000000461 INF: Z Motor: Settle wait time = 4575 ms, measure time = 105 ms (allowed 150 ms), total time = 4680 ms
17-03-18 05:02:38.224 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:38.274 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4735 ms
17-03-18 05:02:38.274 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:38.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:38.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:38.274 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:38.274 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:38.274 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:38.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:38.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:38.274 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:02:38.304 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 05:02:38.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:38.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:02:38.304 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:38.324 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:02:38.324 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 05:02:38.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:38.364 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:38.664 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:38.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:38.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:38.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:38.704 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:38.704 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:38.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:02:38.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:02:38.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:38.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:38.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:02:38.804 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:38.804 -07 000000512 INF: Image SNR check: start
17-03-18 05:02:38.804 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:38.814 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:38.814 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:38.814 -07 000000512 INF: Image SNR check: pass  [peak (Max-Min)=117.80]
17-03-18 05:02:38.814 -07 000000512 INF: Autofocus start
17-03-18 05:02:38.814 -07 000000512 INF: MeasureProfile start
17-03-18 05:02:38.834 -07 000000512 INF: MeasureProfile done
17-03-18 05:02:38.834 -07 000000512 INF: X=6  Z correction [um]=0.004914018
17-03-18 05:02:38.834 -07 000000512 INF: Autofocus finished
17-03-18 05:02:39.014 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:39.014 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:39.014 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139249080980763. ----------
17-03-18 05:02:39.014 -07 000000610 INF: Cycle	132	Tile	1	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:39.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28931, sync = True, waitForSettling = True)
17-03-18 05:02:39.024 -07 000000610 INF: Z Motor: Moving to -0.132438 mm, started at -0.139249 mm, distance = 6.81 um
17-03-18 05:02:39.024 -07 000000610 INF: FPGA: Xmit ZDACW 28931\n [Z Motor]
17-03-18 05:02:39.024 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:02:39.034 -07 000000610 INF: FPGA: 'ZDACW 28931' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:39.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:39.034 -07 000000569 INF: FPGA: Recv ZDACR 28931
17-03-18 05:02:39.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:39.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.194 -07 000000501 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:02:39.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.204 -07 000000455 INF: FPGA: Recv ZSGSRD 29900
17-03-18 05:02:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.214 -07 000000461 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:02:39.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.224 -07 000000467 INF: FPGA: Recv ZSGSRD 29901
17-03-18 05:02:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.234 -07 000000608 INF: FPGA: Recv ZSGSRD 29903
17-03-18 05:02:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.244 -07 000000618 INF: FPGA: Recv ZSGSRD 29904
17-03-18 05:02:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.254 -07 000000455 INF: FPGA: Recv ZSGSRD 29899
17-03-18 05:02:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.264 -07 000000474 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:02:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.274 -07 000000480 INF: FPGA: Recv ZSGSRD 29905
17-03-18 05:02:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:39.284 -07 000000502 INF: FPGA: Recv ZSGSRD 29901
17-03-18 05:02:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:39.294 -07 000000579 INF: FPGA: Recv ZPIEZORD 25276
17-03-18 05:02:39.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:39.304 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -10.1 V.
17-03-18 05:02:39.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29905 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29904 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29899 (-131.6 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:02:39.304 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29905, posNoise = 7, negNoise = 6
17-03-18 05:02:39.304 -07 000000610 INF: Z Motor: After move to -0.132438, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:39.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:39.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:39.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:39.304 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:39.304 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:39.304 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:39.304 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:39.304 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:39.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:39.304 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:39.304 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:02:39.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:39.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:39.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:39.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:39.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:02:39.314 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:39.324 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:02:39.324 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:39.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:02:39.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:39.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:02:39.334 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 05:02:39.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29107 150\n [Camera]
17-03-18 05:02:39.534 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:39.974 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:39.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:39.974 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:39.974 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:39.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:39.974 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:39.974 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:39.974 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:39.984 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:39.984 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:40.164 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29107 816
17-03-18 05:02:40.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:40.354 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:02:40.354 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:02:40.354 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:40.354 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:02:40.354 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:02:40.354 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:40.364 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:40.364 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:02:40.364 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:40.374 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:02:40.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:40.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:40.524 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:40.524 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:40.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:40.524 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:40.524 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:40.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:02:40.534 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:40.534 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:02:40.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:02:40.714 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:40.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29107 150' command took 2 ms to send, 1363 ms to get response, and 1373 ms overall
17-03-18 05:02:40.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:02:40.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132439416110496. ------
17-03-18 05:02:40.714 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:40.714 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13887 mm
17-03-18 05:02:40.714 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:40.834 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:40.834 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 05:02:40.834 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:40.844 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:02:40.844 -07 000000479 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:02:40.844 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:40.844 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30336, sync = True, waitForSettling = False)
17-03-18 05:02:40.844 -07 000000474 INF: Z Motor: Moving to -0.138869 mm, started at -0.132439 mm, distance = -6.43 um
17-03-18 05:02:40.844 -07 000000502 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:02:40.854 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:40.854 -07 000000479 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:40.854 -07 000000479 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:40.854 -07 000000479 INF: Y Motor: Moving 1332 steps1
17-03-18 05:02:40.854 -07 000000474 INF: FPGA: Xmit ZDACW 30336\n [Z Motor]
17-03-18 05:02:40.854 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:02:40.864 -07 000000474 INF: FPGA: 'ZDACW 30336' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:02:40.864 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:40.874 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:40.874 -07 000000618 INF: FPGA: Recv ZDACR 30336
17-03-18 05:02:40.884 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:40.884 -07 000000474 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:02:40.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:02:40.924 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:02:40.924 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:40.924 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:02:40.924 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:02:40.924 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:40.924 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:40.924 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:02:40.934 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:40.934 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:02:41.044 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:41.044 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 05:02:41.234 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:02:41.234 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:02:41.274 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:41.284 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:02:41.284 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:02:41.284 -07 000000479 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:41.284 -07 000000479 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:02:41.284 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.832 mm, average velocity = 2.151 mm/sec
17-03-18 05:02:41.724 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:41.824 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.037119,
17-03-18 05:02:42.234 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:42.234 -07 000000480 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:02:42.244 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:42.244 -07 000000479 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:42.274 -07 000000479 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:42.274 -07 000000479 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:02:42.274 -07 000000479 INF: Y Motor: Moved to 60.7324 after 1432 ms (table move)
17-03-18 05:02:42.274 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138869 mm (DAC = 30336)
17-03-18 05:02:42.274 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:02:42.284 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:02:42.284 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.284 -07 000000618 INF: FPGA: Recv ZSGSRD 30915
17-03-18 05:02:42.294 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.294 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.294 -07 000000581 INF: FPGA: Recv ZSGSRD 30913
17-03-18 05:02:42.304 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.304 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:02:42.314 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30898
17-03-18 05:02:42.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.324 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.324 -07 000000455 INF: FPGA: Recv ZSGSRD 30904
17-03-18 05:02:42.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.334 -07 000000606 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:02:42.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.344 -07 000000447 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:02:42.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.354 -07 000000625 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:02:42.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:42.364 -07 000000501 INF: FPGA: Recv ZSGSRD 30912
17-03-18 05:02:42.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.374 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:42.374 -07 000000479 INF: FPGA: Recv ZPIEZORD 26625
17-03-18 05:02:42.384 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:42.384 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.4 V.
17-03-18 05:02:42.384 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30908 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30898 (-138.0 uncal um), Max = 30915 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:02:42.384 -07 000000579 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30908, posNoise = 7, negNoise = 10
17-03-18 05:02:42.384 -07 000000579 INF: Z Motor: After move to -0.138869, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:42.384 -07 000000579 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-18 05:02:42.384 -07 000000579 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:42.434 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-18 05:02:42.434 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:42.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:42.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:42.434 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:42.434 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:42.434 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:42.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:42.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:42.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:42.444 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:42.444 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:42.454 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:02:42.454 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:02:42.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:42.504 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:02:42.804 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:02:42.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:02:42.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:42.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:42.834 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:42.834 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:42.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 05:02:42.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:02:42.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:42.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:42.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:02:43.034 -07 000000501 INF: Autofocus start
17-03-18 05:02:43.034 -07 000000501 INF: MeasureProfile start
17-03-18 05:02:43.034 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:43.034 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:43.044 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:43.044 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:43.044 -07 000000501 INF: MeasureProfile done
17-03-18 05:02:43.044 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:02:43.044 -07 000000501 INF: Autofocus finished
17-03-18 05:02:43.244 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:43.244 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:43.244 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138882900888683. ----------
17-03-18 05:02:43.244 -07 000000610 INF: Cycle	132	Tile	2	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:43.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28843, sync = True, waitForSettling = True)
17-03-18 05:02:43.254 -07 000000610 INF: Z Motor: Moving to -0.132035 mm, started at -0.138883 mm, distance = 6.85 um
17-03-18 05:02:43.254 -07 000000610 INF: FPGA: Xmit ZDACW 28843\n [Z Motor]
17-03-18 05:02:43.254 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:02:43.264 -07 000000610 INF: FPGA: 'ZDACW 28843' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:02:43.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:43.264 -07 000000608 INF: FPGA: Recv ZDACR 28843
17-03-18 05:02:43.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:43.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.424 -07 000000474 INF: FPGA: Recv ZSGSRD 29836
17-03-18 05:02:43.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:43.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29836
17-03-18 05:02:43.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.444 -07 000000447 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:02:43.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.454 -07 000000455 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:02:43.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.464 -07 000000512 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:02:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29845
17-03-18 05:02:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:02:43.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.494 -07 000000569 INF: FPGA: Recv ZSGSRD 29841
17-03-18 05:02:43.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.504 -07 000000382 INF: FPGA: Recv ZSGSRD 29841
17-03-18 05:02:43.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:43.514 -07 000000606 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:02:43.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:43.524 -07 000000479 INF: FPGA: Recv ZPIEZORD 25235
17-03-18 05:02:43.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:43.534 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.1 V.
17-03-18 05:02:43.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29842 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29843 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29836 (-131.2 uncal um), Max = 29846 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:02:43.534 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29842, posNoise = 4, negNoise = 6
17-03-18 05:02:43.534 -07 000000610 INF: Z Motor: After move to -0.132035, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:43.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:43.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:43.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:43.534 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:43.534 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:43.534 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:43.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:43.534 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:43.534 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:43.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:43.534 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:43.534 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:43.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:43.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:43.544 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:43.544 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:43.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:43.554 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:02:43.554 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:02:43.554 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:02:43.554 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:02:43.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29020 150\n [Camera]
17-03-18 05:02:43.754 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:44.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:44.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:44.194 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:44.194 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:44.194 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:44.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:44.194 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:44.194 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:44.204 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:44.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:44.384 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29020 816
17-03-18 05:02:44.534 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:44.594 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:02:44.594 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:02:44.594 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:44.594 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:44.594 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:02:44.594 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:02:44.594 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:02:44.594 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:44.604 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:44.604 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:02:44.744 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:44.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:44.744 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:44.744 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:44.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:02:44.744 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:44.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:44.744 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:44.744 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:44.744 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:02:44.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:44.934 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:44.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29020 150' command took 2 ms to send, 1362 ms to get response, and 1373 ms overall
17-03-18 05:02:44.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:02:44.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132034690745565. ------
17-03-18 05:02:44.934 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:44.934 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13892 mm
17-03-18 05:02:44.934 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:44.934 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:44.944 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:44.944 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:44.944 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:02:44.944 -07 000000579 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:02:44.944 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30346, sync = True, waitForSettling = False)
17-03-18 05:02:44.944 -07 000000626 INF: Z Motor: Moving to -0.138915 mm, started at -0.132035 mm, distance = -6.88 um
17-03-18 05:02:44.954 -07 000000626 INF: FPGA: Xmit ZDACW 30346\n [Z Motor]
17-03-18 05:02:44.954 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:02:44.964 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:44.964 -07 000000626 INF: FPGA: 'ZDACW 30346' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:02:44.964 -07 000000625 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:02:44.974 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:02:44.974 -07 000000579 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:44.974 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:44.974 -07 000000579 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:44.974 -07 000000579 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:02:44.974 -07 000000480 INF: FPGA: Recv ZDACR 30346
17-03-18 05:02:44.984 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:44.984 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:02:44.984 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:45.134 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:02:45.134 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:02:45.134 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:45.134 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:02:45.134 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:02:45.134 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:45.134 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:45.144 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:02:45.144 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:02:45.144 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:02:45.144 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:45.144 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:45.354 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:02:45.354 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:02:45.404 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:45.404 -07 000000606 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:02:45.414 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:45.414 -07 000000579 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:45.414 -07 000000579 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:02:45.414 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 05:02:46.364 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:46.364 -07 000000581 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:02:46.374 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:46.374 -07 000000579 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:46.404 -07 000000579 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:46.404 -07 000000579 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:46.404 -07 000000579 INF: Y Motor: Moved to 61.5630 after 1460 ms (table move)
17-03-18 05:02:46.404 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138915 mm (DAC = 30346)
17-03-18 05:02:46.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:02:46.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:46.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.414 -07 000000502 INF: FPGA: Recv ZSGSRD 30925
17-03-18 05:02:46.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.424 -07 000000424 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:02:46.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.434 -07 000000447 INF: FPGA: Recv ZSGSRD 30915
17-03-18 05:02:46.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.444 -07 000000579 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:02:46.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.454 -07 000000626 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:02:46.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.464 -07 000000479 INF: FPGA: Recv ZSGSRD 30919
17-03-18 05:02:46.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.474 -07 000000424 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:02:46.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.484 -07 000000581 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:02:46.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:46.494 -07 000000480 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:02:46.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.504 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:46.504 -07 000000626 INF: FPGA: Recv ZPIEZORD 26642
17-03-18 05:02:46.514 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:46.514 -07 000000467 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 05:02:46.514 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30915 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30914 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30908 (-138.1 uncal um), Max = 30925 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:02:46.514 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30915, posNoise = 10, negNoise = 7
17-03-18 05:02:46.514 -07 000000467 INF: Z Motor: After move to -0.138915, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:46.514 -07 000000467 INF: Z Motor: Settle wait time = 1463 ms, measure time = 104 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:02:46.514 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:46.564 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:02:46.564 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:46.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:46.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:46.564 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:46.564 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:46.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:46.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:46.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:46.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:46.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:46.574 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:46.584 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:02:46.584 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:02:46.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:46.634 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:46.724 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:46.934 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:46.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:46.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:46.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:02:46.974 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:46.974 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:46.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:02:47.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:02:47.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:47.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:47.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:02:47.074 -07 000000479 INF: Autofocus start
17-03-18 05:02:47.074 -07 000000479 INF: MeasureProfile start
17-03-18 05:02:47.074 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:47.074 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:47.084 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:47.084 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:47.084 -07 000000479 INF: MeasureProfile done
17-03-18 05:02:47.084 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:02:47.084 -07 000000479 INF: Autofocus finished
17-03-18 05:02:47.194 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.020806,
17-03-18 05:02:47.284 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:47.284 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:47.284 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138927870373675. ----------
17-03-18 05:02:47.284 -07 000000610 INF: Cycle	132	Tile	3	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:47.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28841, sync = True, waitForSettling = True)
17-03-18 05:02:47.294 -07 000000610 INF: Z Motor: Moving to -0.132026 mm, started at -0.138928 mm, distance = 6.90 um
17-03-18 05:02:47.294 -07 000000610 INF: FPGA: Xmit ZDACW 28841\n [Z Motor]
17-03-18 05:02:47.294 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:02:47.304 -07 000000610 INF: FPGA: 'ZDACW 28841' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:47.304 -07 000000455 INF: FPGA: Recv ZDACR 28841
17-03-18 05:02:47.314 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:47.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.464 -07 000000502 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:02:47.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.474 -07 000000479 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:02:47.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.484 -07 000000447 INF: FPGA: Recv ZSGSRD 29833
17-03-18 05:02:47.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.494 -07 000000579 INF: FPGA: Recv ZSGSRD 29837
17-03-18 05:02:47.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.504 -07 000000569 INF: FPGA: Recv ZSGSRD 29845
17-03-18 05:02:47.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.514 -07 000000618 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:02:47.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.524 -07 000000474 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:02:47.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.534 -07 000000581 INF: FPGA: Recv ZSGSRD 29845
17-03-18 05:02:47.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.544 -07 000000461 INF: FPGA: Recv ZSGSRD 29840
17-03-18 05:02:47.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:47.554 -07 000000569 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:02:47.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:47.564 -07 000000502 INF: FPGA: Recv ZPIEZORD 25260
17-03-18 05:02:47.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:47.574 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -10.0 V.
17-03-18 05:02:47.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29841 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29842 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29833 (-131.2 uncal um), Max = 29845 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:02:47.574 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29841, posNoise = 4, negNoise = 8
17-03-18 05:02:47.574 -07 000000610 INF: Z Motor: After move to -0.132026, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:47.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:02:47.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:47.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:47.574 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:47.574 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:47.574 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:47.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:47.574 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:47.574 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:47.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:02:47.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:47.574 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:47.574 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:47.584 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:47.584 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:47.584 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:47.584 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:47.584 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:02:47.584 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:47.584 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:02:47.584 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:02:47.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29018 150\n [Camera]
17-03-18 05:02:47.794 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:48.224 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:48.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:48.224 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:48.224 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:48.224 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:02:48.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:48.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:48.224 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:48.224 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:48.224 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:02:48.414 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29018 816
17-03-18 05:02:48.564 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:48.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:02:48.604 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:02:48.604 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:48.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:02:48.604 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:02:48.604 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:48.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:48.604 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:02:48.604 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:48.614 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:02:48.774 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:48.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:48.774 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:48.774 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:48.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:02:48.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:48.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:48.774 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:48.774 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:48.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:02:48.964 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:02:48.964 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:48.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29018 150' command took 2 ms to send, 1364 ms to get response, and 1372 ms overall
17-03-18 05:02:48.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:02:48.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132028266533424. ------
17-03-18 05:02:48.964 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:48.964 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13838 mm
17-03-18 05:02:48.964 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:48.974 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:48.974 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:02:48.974 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30229, sync = True, waitForSettling = False)
17-03-18 05:02:48.974 -07 000000625 INF: Z Motor: Moving to -0.138379 mm, started at -0.132028 mm, distance = -6.35 um
17-03-18 05:02:48.974 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:48.974 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:02:48.974 -07 000000579 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:02:48.984 -07 000000625 INF: FPGA: Xmit ZDACW 30229\n [Z Motor]
17-03-18 05:02:48.984 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:02:48.994 -07 000000625 INF: FPGA: 'ZDACW 30229' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:02:48.994 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:48.994 -07 000000502 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:02:49.004 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:02:49.004 -07 000000579 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:49.004 -07 000000579 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:49.004 -07 000000579 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:02:49.004 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:49.004 -07 000000467 INF: FPGA: Recv ZDACR 30229
17-03-18 05:02:49.014 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:02:49.014 -07 000000625 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:02:49.014 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:49.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:02:49.174 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:02:49.174 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:49.174 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:49.174 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 05:02:49.174 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:02:49.174 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:02:49.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 519 ms.
17-03-18 05:02:49.294 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 05:02:49.294 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:49.294 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:02:49.304 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 05:02:49.384 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:02:49.384 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 05:02:49.434 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:49.444 -07 000000581 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:02:49.444 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:02:49.444 -07 000000579 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:49.444 -07 000000579 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:02:49.444 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 05:02:50.394 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:50.394 -07 000000608 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:02:50.404 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.404 -07 000000579 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:50.434 -07 000000579 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:50.434 -07 000000579 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:02:50.434 -07 000000579 INF: Y Motor: Moved to 62.3950 after 1456 ms (table move)
17-03-18 05:02:50.434 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138379 mm (DAC = 30229)
17-03-18 05:02:50.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.434 -07 000000581 INF: FPGA: Recv ZSGSRD 30830
17-03-18 05:02:50.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:02:50.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.444 -07 000000447 INF: FPGA: Recv ZSGSRD 30830
17-03-18 05:02:50.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.454 -07 000000424 INF: FPGA: Recv ZSGSRD 30823
17-03-18 05:02:50.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.464 -07 000000569 INF: FPGA: Recv ZSGSRD 30829
17-03-18 05:02:50.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.474 -07 000000579 INF: FPGA: Recv ZSGSRD 30823
17-03-18 05:02:50.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.484 -07 000000474 INF: FPGA: Recv ZSGSRD 30832
17-03-18 05:02:50.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.494 -07 000000467 INF: FPGA: Recv ZSGSRD 30836
17-03-18 05:02:50.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.504 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.504 -07 000000455 INF: FPGA: Recv ZSGSRD 30832
17-03-18 05:02:50.514 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:02:50.514 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.514 -07 000000424 INF: FPGA: Recv ZSGSRD 30832
17-03-18 05:02:50.524 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:50.524 -07 000000626 INF: FPGA: Recv ZSGSRD 30826
17-03-18 05:02:50.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.534 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:50.534 -07 000000480 INF: FPGA: Recv ZPIEZORD 26594
17-03-18 05:02:50.544 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:50.544 -07 000000512 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.3 V.
17-03-18 05:02:50.544 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30829 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30830 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:02:50.544 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30829, posNoise = 7, negNoise = 6
17-03-18 05:02:50.544 -07 000000512 INF: Z Motor: After move to -0.138379, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:50.544 -07 000000512 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:02:50.544 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:50.594 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:02:50.594 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:50.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:50.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:50.594 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:50.594 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:50.594 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:50.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:50.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:02:50.594 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:50.594 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:50.604 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:50.604 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:02:50.604 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:02:50.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:50.654 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:50.954 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:50.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:50.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:50.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:50.994 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:50.994 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:50.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:02:51.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:02:51.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:51.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:51.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:02:51.094 -07 000000461 INF: Autofocus start
17-03-18 05:02:51.094 -07 000000461 INF: MeasureProfile start
17-03-18 05:02:51.094 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:51.094 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:51.104 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:51.104 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:51.104 -07 000000461 INF: MeasureProfile done
17-03-18 05:02:51.104 -07 000000461 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:02:51.104 -07 000000461 INF: Autofocus finished
17-03-18 05:02:51.304 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:51.304 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:51.304 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138375388129484. ----------
17-03-18 05:02:51.304 -07 000000610 INF: Cycle	132	Tile	4	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:51.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28770, sync = True, waitForSettling = True)
17-03-18 05:02:51.314 -07 000000610 INF: Z Motor: Moving to -0.131701 mm, started at -0.138375 mm, distance = 6.67 um
17-03-18 05:02:51.314 -07 000000610 INF: FPGA: Xmit ZDACW 28770\n [Z Motor]
17-03-18 05:02:51.314 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:02:51.324 -07 000000610 INF: FPGA: 'ZDACW 28770' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:51.324 -07 000000501 INF: FPGA: Recv ZDACR 28770
17-03-18 05:02:51.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.484 -07 000000625 INF: FPGA: Recv ZSGSRD 29786
17-03-18 05:02:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.494 -07 000000447 INF: FPGA: Recv ZSGSRD 29794
17-03-18 05:02:51.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.504 -07 000000606 INF: FPGA: Recv ZSGSRD 29793
17-03-18 05:02:51.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.514 -07 000000461 INF: FPGA: Recv ZSGSRD 29788
17-03-18 05:02:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.524 -07 000000455 INF: FPGA: Recv ZSGSRD 29788
17-03-18 05:02:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29794
17-03-18 05:02:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.544 -07 000000626 INF: FPGA: Recv ZSGSRD 29793
17-03-18 05:02:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.554 -07 000000467 INF: FPGA: Recv ZSGSRD 29787
17-03-18 05:02:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.564 -07 000000382 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:02:51.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:51.574 -07 000000581 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:02:51.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:51.584 -07 000000625 INF: FPGA: Recv ZPIEZORD 25239
17-03-18 05:02:51.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:51.594 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -10.0 V.
17-03-18 05:02:51.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29790 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29791 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29786 (-130.9 uncal um), Max = 29794 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:02:51.594 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29790, posNoise = 4, negNoise = 4
17-03-18 05:02:51.594 -07 000000610 INF: Z Motor: After move to -0.131701, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:51.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:02:51.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:51.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:51.594 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:51.594 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:51.594 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:51.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:51.594 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:51.594 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:51.594 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:51.594 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:51.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:02:51.594 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:51.604 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:51.604 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:51.604 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:02:51.604 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:51.614 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:02:51.614 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:02:51.614 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:02:51.614 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:02:51.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28946 150\n [Camera]
17-03-18 05:02:51.724 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:51.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:51.814 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:52.254 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:52.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:52.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:52.254 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:52.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:52.254 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:52.254 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:52.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:52.254 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:52.254 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:52.444 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28946 817
17-03-18 05:02:52.564 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.020806,
17-03-18 05:02:52.584 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:52.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:02:52.644 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:02:52.644 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:52.644 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:02:52.644 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:02:52.644 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:52.644 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:52.644 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:02:52.654 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:52.654 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:02:52.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:52.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:52.794 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:52.804 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:52.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:52.804 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:52.804 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:52.804 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:02:52.814 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:52.814 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 05:02:52.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:02:52.984 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:52.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28946 150' command took 2 ms to send, 1369 ms to get response, and 1372 ms overall
17-03-18 05:02:52.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:02:52.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131700631714194. ------
17-03-18 05:02:52.994 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:52.994 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13834 mm
17-03-18 05:02:52.994 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:52.994 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:52.994 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30221, sync = True, waitForSettling = False)
17-03-18 05:02:53.114 -07 000000447 INF: Z Motor: Moving to -0.138343 mm, started at -0.131701 mm, distance = -6.64 um
17-03-18 05:02:53.114 -07 000000447 INF: FPGA: Xmit ZDACW 30221\n [Z Motor]
17-03-18 05:02:53.114 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:02:53.114 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:02:53.114 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:02:53.114 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:02:53.124 -07 000000447 INF: FPGA: 'ZDACW 30221' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:53.124 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:53.124 -07 000000502 INF: FPGA: Recv ZDACR 30221
17-03-18 05:02:53.134 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:53.134 -07 000000447 INF: Z Motor: MoveAbsStepped took 133 ms (did NOT wait for settling yet))
17-03-18 05:02:53.134 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:53.144 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:53.144 -07 000000625 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:02:53.154 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:02:53.154 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:53.154 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:53.154 -07 000000581 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:02:53.154 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:53.194 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:02:53.194 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:02:53.194 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:53.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:02:53.204 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:02:53.204 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:53.204 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:53.204 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:02:53.204 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:53.214 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:02:53.334 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:53.334 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 215 ms overall
17-03-18 05:02:53.524 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:02:53.524 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 05:02:53.574 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:53.584 -07 000000424 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:02:53.584 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:02:53.584 -07 000000581 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:53.584 -07 000000581 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:02:53.584 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 05:02:54.534 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:54.534 -07 000000606 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:02:54.544 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.544 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:54.574 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:54.574 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:02:54.574 -07 000000581 INF: Y Motor: Moved to 63.2231 after 1454 ms (table move)
17-03-18 05:02:54.574 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138343 mm (DAC = 30221)
17-03-18 05:02:54.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.574 -07 000000474 INF: FPGA: Recv ZSGSRD 30827
17-03-18 05:02:54.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:02:54.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30824
17-03-18 05:02:54.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.594 -07 000000606 INF: FPGA: Recv ZSGSRD 30830
17-03-18 05:02:54.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.604 -07 000000608 INF: FPGA: Recv ZSGSRD 30828
17-03-18 05:02:54.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.614 -07 000000625 INF: FPGA: Recv ZSGSRD 30825
17-03-18 05:02:54.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.624 -07 000000382 INF: FPGA: Recv ZSGSRD 30824
17-03-18 05:02:54.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.634 -07 000000626 INF: FPGA: Recv ZSGSRD 30817
17-03-18 05:02:54.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.644 -07 000000447 INF: FPGA: Recv ZSGSRD 30824
17-03-18 05:02:54.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.654 -07 000000608 INF: FPGA: Recv ZSGSRD 30825
17-03-18 05:02:54.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:54.664 -07 000000625 INF: FPGA: Recv ZSGSRD 30830
17-03-18 05:02:54.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.674 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:54.674 -07 000000502 INF: FPGA: Recv ZPIEZORD 26579
17-03-18 05:02:54.684 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:54.684 -07 000000467 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.3 V.
17-03-18 05:02:54.684 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30825 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30825 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30817 (-137.5 uncal um), Max = 30830 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:02:54.684 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30825, posNoise = 5, negNoise = 8
17-03-18 05:02:54.684 -07 000000467 INF: Z Motor: After move to -0.138343, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:54.684 -07 000000467 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:02:54.684 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:54.734 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:02:54.734 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:54.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:54.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:54.734 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:54.734 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:54.734 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:54.734 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:54.734 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:54.734 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:54.744 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:02:54.744 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:54.754 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:02:54.754 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:02:54.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:54.794 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:55.094 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:55.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:55.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:55.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:02:55.144 -07 000000480 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:02:55.144 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:55.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 05:02:55.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:02:55.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:55.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:02:55.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:02:55.244 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:55.244 -07 000000618 INF: Autofocus start
17-03-18 05:02:55.244 -07 000000618 INF: MeasureProfile start
17-03-18 05:02:55.244 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:55.254 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:55.254 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:55.254 -07 000000618 INF: MeasureProfile done
17-03-18 05:02:55.254 -07 000000618 INF: X=-39  Z correction [um]=-0.1932479
17-03-18 05:02:55.254 -07 000000618 INF: Autofocus finished
17-03-18 05:02:55.454 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:55.454 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:02:55.454 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138349691280916. ----------
17-03-18 05:02:55.454 -07 000000610 INF: Cycle	132	Tile	5	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:55.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28691, sync = True, waitForSettling = True)
17-03-18 05:02:55.464 -07 000000610 INF: Z Motor: Moving to -0.131339 mm, started at -0.138350 mm, distance = 7.01 um
17-03-18 05:02:55.464 -07 000000610 INF: FPGA: Xmit ZDACW 28691\n [Z Motor]
17-03-18 05:02:55.464 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:02:55.474 -07 000000610 INF: FPGA: 'ZDACW 28691' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:02:55.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:55.474 -07 000000606 INF: FPGA: Recv ZDACR 28691
17-03-18 05:02:55.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:55.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:02:55.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:55.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.644 -07 000000625 INF: FPGA: Recv ZSGSRD 29738
17-03-18 05:02:55.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.654 -07 000000569 INF: FPGA: Recv ZSGSRD 29729
17-03-18 05:02:55.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.664 -07 000000626 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:02:55.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.674 -07 000000618 INF: FPGA: Recv ZSGSRD 29742
17-03-18 05:02:55.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.684 -07 000000579 INF: FPGA: Recv ZSGSRD 29731
17-03-18 05:02:55.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.694 -07 000000474 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:02:55.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.704 -07 000000608 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:02:55.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.714 -07 000000512 INF: FPGA: Recv ZSGSRD 29736
17-03-18 05:02:55.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:55.724 -07 000000606 INF: FPGA: Recv ZSGSRD 29730
17-03-18 05:02:55.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:55.734 -07 000000447 INF: FPGA: Recv ZPIEZORD 25191
17-03-18 05:02:55.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:55.744 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.0 V.
17-03-18 05:02:55.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29734 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29735 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29729 (-130.5 uncal um), Max = 29742 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:02:55.744 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29734, posNoise = 8, negNoise = 5
17-03-18 05:02:55.744 -07 000000610 INF: Z Motor: After move to -0.131339, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:55.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:02:55.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:55.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:55.744 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:55.744 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:55.744 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:55.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:55.744 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:55.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:55.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:02:55.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:55.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:02:55.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:55.754 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:02:55.754 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:55.754 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:55.754 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:55.764 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:02:55.764 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:02:55.764 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:02:55.764 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:02:55.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28868 150\n [Camera]
17-03-18 05:02:55.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:02:56.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:02:56.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:02:56.394 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:56.394 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:02:56.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:02:56.394 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:56.404 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:56.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:02:56.404 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:56.404 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:02:56.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28868 816
17-03-18 05:02:56.724 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:02:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:02:56.734 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:02:56.774 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:02:56.774 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:02:56.774 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:56.774 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:02:56.774 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:02:56.774 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:56.784 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:56.784 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:02:56.784 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:02:56.784 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:02:56.944 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:02:56.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:02:56.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:02:56.944 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:02:56.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:02:56.944 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:02:56.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:02:56.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:02:56.944 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:02:56.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:02:57.134 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:02:57.134 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:02:57.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28868 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-18 05:02:57.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:02:57.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131340875834255. ------
17-03-18 05:02:57.144 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13758 mm
17-03-18 05:02:57.144 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:02:57.144 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:57.144 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:57.144 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30055, sync = True, waitForSettling = False)
17-03-18 05:02:57.144 -07 000000461 INF: Z Motor: Moving to -0.137583 mm, started at -0.131341 mm, distance = -6.24 um
17-03-18 05:02:57.144 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:02:57.144 -07 000000625 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:02:57.154 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:57.154 -07 000000461 INF: FPGA: Xmit ZDACW 30055\n [Z Motor]
17-03-18 05:02:57.154 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:02:57.164 -07 000000461 INF: FPGA: 'ZDACW 30055' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:02:57.164 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:57.164 -07 000000467 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:02:57.174 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:02:57.174 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:02:57.174 -07 000000625 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:57.174 -07 000000625 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:02:57.174 -07 000000625 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:02:57.184 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:57.184 -07 000000455 INF: FPGA: Recv ZDACR 30055
17-03-18 05:02:57.194 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:02:57.194 -07 000000461 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:02:57.194 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:02:57.334 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:02:57.334 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:02:57.334 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:57.334 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:02:57.344 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:02:57.344 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:02:57.344 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:57.344 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:02:57.344 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:02:57.344 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:02:57.374 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:02:57.374 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:02:57.564 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:02:57.564 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:02:57.644 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:57.644 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:02:57.654 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:02:57.654 -07 000000625 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:57.654 -07 000000625 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:02:57.654 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-18 05:02:57.934 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.985358,
17-03-18 05:02:58.604 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:02:58.604 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:02:58.614 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.614 -07 000000625 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:02:58.644 -07 000000625 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:02:58.644 -07 000000625 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:02:58.644 -07 000000625 INF: Y Motor: Moved to 64.0562 after 1496 ms (table move)
17-03-18 05:02:58.644 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137583 mm (DAC = 30055)
17-03-18 05:02:58.644 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.644 -07 000000382 INF: FPGA: Recv ZSGSRD 30706
17-03-18 05:02:58.654 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:02:58.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.654 -07 000000455 INF: FPGA: Recv ZSGSRD 30703
17-03-18 05:02:58.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.664 -07 000000608 INF: FPGA: Recv ZSGSRD 30706
17-03-18 05:02:58.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.674 -07 000000501 INF: FPGA: Recv ZSGSRD 30708
17-03-18 05:02:58.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.684 -07 000000606 INF: FPGA: Recv ZSGSRD 30709
17-03-18 05:02:58.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.694 -07 000000579 INF: FPGA: Recv ZSGSRD 30713
17-03-18 05:02:58.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.704 -07 000000581 INF: FPGA: Recv ZSGSRD 30709
17-03-18 05:02:58.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.714 -07 000000608 INF: FPGA: Recv ZSGSRD 30698
17-03-18 05:02:58.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.724 -07 000000501 INF: FPGA: Recv ZSGSRD 30704
17-03-18 05:02:58.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:58.734 -07 000000606 INF: FPGA: Recv ZSGSRD 30709
17-03-18 05:02:58.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.744 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:58.744 -07 000000579 INF: FPGA: Recv ZPIEZORD 26490
17-03-18 05:02:58.754 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:58.754 -07 000000424 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.3 V.
17-03-18 05:02:58.754 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30706 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30707 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30698 (-136.7 uncal um), Max = 30713 (-136.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:02:58.754 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30706, posNoise = 7, negNoise = 8
17-03-18 05:02:58.754 -07 000000424 INF: Z Motor: After move to -0.137583, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:58.754 -07 000000424 INF: Z Motor: Settle wait time = 1499 ms, measure time = 105 ms (allowed 150 ms), total time = 1604 ms
17-03-18 05:02:58.754 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:02:58.804 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1659 ms
17-03-18 05:02:58.804 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:02:58.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:58.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:58.804 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:58.804 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:02:58.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:58.804 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:58.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:02:58.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:02:58.814 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:58.814 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:02:58.814 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:02:58.814 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:02:58.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:02:58.864 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:02:59.164 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:02:59.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:02:59.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:02:59.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:02:59.204 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:02:59.204 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:02:59.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:02:59.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:02:59.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:02:59.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:02:59.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:02:59.304 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:02:59.304 -07 000000467 INF: Autofocus start
17-03-18 05:02:59.304 -07 000000467 INF: MeasureProfile start
17-03-18 05:02:59.304 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:02:59.314 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:02:59.314 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:02:59.324 -07 000000467 INF: MeasureProfile done
17-03-18 05:02:59.324 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:02:59.324 -07 000000467 INF: Autofocus finished
17-03-18 05:02:59.514 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:02:59.514 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:02:59.524 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137585210036047. ----------
17-03-18 05:02:59.524 -07 000000610 INF: Cycle	132	Tile	6	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:02:59.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28579, sync = True, waitForSettling = True)
17-03-18 05:02:59.524 -07 000000610 INF: Z Motor: Moving to -0.130826 mm, started at -0.137585 mm, distance = 6.76 um
17-03-18 05:02:59.524 -07 000000610 INF: FPGA: Xmit ZDACW 28579\n [Z Motor]
17-03-18 05:02:59.524 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:02:59.534 -07 000000610 INF: FPGA: 'ZDACW 28579' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:02:59.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:02:59.534 -07 000000502 INF: FPGA: Recv ZDACR 28579
17-03-18 05:02:59.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:02:59.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29655
17-03-18 05:02:59.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:02:59.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.704 -07 000000447 INF: FPGA: Recv ZSGSRD 29654
17-03-18 05:02:59.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.714 -07 000000512 INF: FPGA: Recv ZSGSRD 29652
17-03-18 05:02:59.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.724 -07 000000455 INF: FPGA: Recv ZSGSRD 29654
17-03-18 05:02:59.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.734 -07 000000480 INF: FPGA: Recv ZSGSRD 29657
17-03-18 05:02:59.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.744 -07 000000479 INF: FPGA: Recv ZSGSRD 29655
17-03-18 05:02:59.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.754 -07 000000579 INF: FPGA: Recv ZSGSRD 29654
17-03-18 05:02:59.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.764 -07 000000474 INF: FPGA: Recv ZSGSRD 29658
17-03-18 05:02:59.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.774 -07 000000579 INF: FPGA: Recv ZSGSRD 29660
17-03-18 05:02:59.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:02:59.784 -07 000000424 INF: FPGA: Recv ZSGSRD 29660
17-03-18 05:02:59.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:02:59.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:02:59.794 -07 000000625 INF: FPGA: Recv ZPIEZORD 25140
17-03-18 05:02:59.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:02:59.804 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.9 V.
17-03-18 05:02:59.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29656 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29655 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29652 (-130.0 uncal um), Max = 29660 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:02:59.804 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29656, posNoise = 4, negNoise = 4
17-03-18 05:02:59.804 -07 000000610 INF: Z Motor: After move to -0.130826, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:02:59.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:02:59.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:02:59.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:02:59.804 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:02:59.804 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:02:59.804 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:02:59.804 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:02:59.804 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:02:59.804 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:02:59.804 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:02:59.804 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:02:59.804 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:02:59.804 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:02:59.814 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:02:59.814 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:02:59.814 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:02:59.814 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:02:59.824 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:02:59.824 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:02:59.824 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:02:59.824 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:02:59.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28756 150\n [Camera]
17-03-18 05:03:00.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:00.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:00.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:00.464 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:00.464 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:00.464 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:03:00.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:00.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:00.474 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:00.474 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:00.474 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:03:00.654 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28756 816
17-03-18 05:03:00.804 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:00.864 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:03:00.864 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:03:00.864 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:00.864 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:03:00.864 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:03:00.864 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:00.864 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:00.864 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:03:00.874 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:00.874 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:03:01.014 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:01.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:01.014 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:01.014 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:01.014 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:03:01.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:01.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:01.024 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:01.024 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:01.024 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:03:01.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:03:01.204 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:01.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28756 150' command took 2 ms to send, 1368 ms to get response, and 1376 ms overall
17-03-18 05:03:01.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:01.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.130839787287198. ------
17-03-18 05:03:01.334 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:01.334 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13737 mm
17-03-18 05:03:01.334 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:01.344 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30009, sync = True, waitForSettling = False)
17-03-18 05:03:01.344 -07 000000480 INF: Z Motor: Moving to -0.137372 mm, started at -0.130840 mm, distance = -6.53 um
17-03-18 05:03:01.344 -07 000000480 INF: FPGA: Xmit ZDACW 30009\n [Z Motor]
17-03-18 05:03:01.344 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:01.344 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:03:01.344 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:03:01.344 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:03:01.344 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:03:01.354 -07 000000480 INF: FPGA: 'ZDACW 30009' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:01.354 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:01.354 -07 000000606 INF: FPGA: Recv ZDACR 30009
17-03-18 05:03:01.364 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:01.364 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:01.364 -07 000000480 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 05:03:01.374 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:01.374 -07 000000606 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:03:01.384 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 05:03:01.384 -07 000000382 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:01.384 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:01.384 -07 000000382 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:03:01.384 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:01.414 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:03:01.414 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:03:01.414 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:01.424 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:03:01.424 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:03:01.424 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:01.424 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:01.424 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:03:01.424 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:03:01.434 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:03:01.564 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:01.564 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:03:01.724 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:01.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:01.764 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:03:01.764 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-18 05:03:01.814 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:01.814 -07 000000424 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:03:01.824 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:01.824 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:01.824 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:03:01.824 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.836 mm, average velocity = 2.213 mm/sec
17-03-18 05:03:02.774 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:02.774 -07 000000625 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:03:02.784 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:02.784 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:02.814 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:02.814 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:02.814 -07 000000382 INF: Y Motor: Moved to 64.8779 after 1469 ms (table move)
17-03-18 05:03:02.814 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137372 mm (DAC = 30009)
17-03-18 05:03:02.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.814 -07 000000569 INF: FPGA: Recv ZSGSRD 30676
17-03-18 05:03:02.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:02.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.824 -07 000000474 INF: FPGA: Recv ZSGSRD 30675
17-03-18 05:03:02.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30666
17-03-18 05:03:02.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.844 -07 000000579 INF: FPGA: Recv ZSGSRD 30671
17-03-18 05:03:02.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.854 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.854 -07 000000618 INF: FPGA: Recv ZSGSRD 30676
17-03-18 05:03:02.864 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.864 -07 000000382 INF: FPGA: Recv ZSGSRD 30680
17-03-18 05:03:02.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.874 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.874 -07 000000461 INF: FPGA: Recv ZSGSRD 30680
17-03-18 05:03:02.884 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.884 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.884 -07 000000467 INF: FPGA: Recv ZSGSRD 30674
17-03-18 05:03:02.894 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.894 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.894 -07 000000455 INF: FPGA: Recv ZSGSRD 30675
17-03-18 05:03:02.904 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.904 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:02.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30674
17-03-18 05:03:02.914 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.914 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:02.914 -07 000000626 INF: FPGA: Recv ZPIEZORD 26469
17-03-18 05:03:02.924 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:02.924 -07 000000608 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.2 V.
17-03-18 05:03:02.924 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30675 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30675 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30666 (-136.5 uncal um), Max = 30680 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:03:02.924 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30675, posNoise = 5, negNoise = 9
17-03-18 05:03:02.924 -07 000000608 INF: Z Motor: After move to -0.137372, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:02.924 -07 000000608 INF: Z Motor: Settle wait time = 1473 ms, measure time = 112 ms (allowed 150 ms), total time = 1585 ms
17-03-18 05:03:02.924 -07 000000608 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:02.964 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:03:02.964 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:02.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:02.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:02.964 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:02.964 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:02.964 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:02.964 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:02.964 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:03:02.964 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:02.974 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:02.974 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:02.984 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:03:02.984 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:03:03.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:03.044 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:03.304 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.96762,
17-03-18 05:03:03.344 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:03.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:03.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:03.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:03.384 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:03.384 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:03.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 403 ms overall
17-03-18 05:03:03.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:03:03.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:03.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:03.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:03:03.484 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:03.484 -07 000000512 INF: Autofocus start
17-03-18 05:03:03.484 -07 000000512 INF: MeasureProfile start
17-03-18 05:03:03.484 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:03.494 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:03.494 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:03.504 -07 000000512 INF: MeasureProfile done
17-03-18 05:03:03.504 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:03:03.504 -07 000000512 INF: Autofocus finished
17-03-18 05:03:03.694 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:03.694 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:03.704 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137386059459652. ----------
17-03-18 05:03:03.704 -07 000000610 INF: Cycle	132	Tile	7	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:03.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28533, sync = True, waitForSettling = True)
17-03-18 05:03:03.704 -07 000000610 INF: Z Motor: Moving to -0.130616 mm, started at -0.137386 mm, distance = 6.77 um
17-03-18 05:03:03.704 -07 000000610 INF: FPGA: Xmit ZDACW 28533\n [Z Motor]
17-03-18 05:03:03.704 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:03:03.714 -07 000000610 INF: FPGA: 'ZDACW 28533' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:03.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:03.714 -07 000000447 INF: FPGA: Recv ZDACR 28533
17-03-18 05:03:03.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:03.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29628
17-03-18 05:03:03.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:03.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29625
17-03-18 05:03:03.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29623
17-03-18 05:03:03.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.904 -07 000000581 INF: FPGA: Recv ZSGSRD 29617
17-03-18 05:03:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.914 -07 000000579 INF: FPGA: Recv ZSGSRD 29622
17-03-18 05:03:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.924 -07 000000606 INF: FPGA: Recv ZSGSRD 29625
17-03-18 05:03:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.934 -07 000000382 INF: FPGA: Recv ZSGSRD 29617
17-03-18 05:03:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.944 -07 000000618 INF: FPGA: Recv ZSGSRD 29623
17-03-18 05:03:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.954 -07 000000581 INF: FPGA: Recv ZSGSRD 29624
17-03-18 05:03:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:03.964 -07 000000579 INF: FPGA: Recv ZSGSRD 29622
17-03-18 05:03:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:03.974 -07 000000606 INF: FPGA: Recv ZPIEZORD 25090
17-03-18 05:03:03.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:03.984 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.9 V.
17-03-18 05:03:03.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29623 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29617 (-129.8 uncal um), Max = 29628 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:03:03.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29623, posNoise = 5, negNoise = 6
17-03-18 05:03:03.984 -07 000000610 INF: Z Motor: After move to -0.130616, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:03.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:03:03.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:03.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:03.984 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:03.984 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:03.984 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:03.984 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:03.984 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:03.984 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:03.984 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:03.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:03.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:03.984 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:03.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:03.994 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:03.994 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:03.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:03.994 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:03.994 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:03:04.004 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:03:04.004 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:03:04.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28710 150\n [Camera]
17-03-18 05:03:04.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:03:04.634 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:04.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:04.634 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:04.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:04.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:04.634 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:04.644 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:04.644 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:04.644 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:04.644 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:04.824 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28710 816
17-03-18 05:03:04.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:05.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:03:05.024 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:03:05.024 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:05.024 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:03:05.024 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:03:05.024 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:05.024 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:03:05.024 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:03:05.024 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:03:05.034 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:03:05.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:05.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:05.184 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:05.184 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:05.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:05.184 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:05.194 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:05.194 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:03:05.194 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:05.194 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:03:05.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:05.374 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:05.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28710 150' command took 2 ms to send, 1367 ms to get response, and 1373 ms overall
17-03-18 05:03:05.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:05.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.13062778828652. ------
17-03-18 05:03:05.384 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:05.384 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13727 mm
17-03-18 05:03:05.384 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:05.504 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:05.504 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 05:03:05.504 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:05.504 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29987, sync = True, waitForSettling = False)
17-03-18 05:03:05.504 -07 000000569 INF: Z Motor: Moving to -0.137272 mm, started at -0.130628 mm, distance = -6.64 um
17-03-18 05:03:05.504 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:03:05.504 -07 000000581 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:03:05.514 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:05.514 -07 000000479 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:03:05.524 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:03:05.524 -07 000000581 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:05.524 -07 000000569 INF: FPGA: Xmit ZDACW 29987\n [Z Motor]
17-03-18 05:03:05.524 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:03:05.524 -07 000000581 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:05.524 -07 000000581 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:03:05.534 -07 000000569 INF: FPGA: 'ZDACW 29987' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:03:05.534 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:05.544 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:05.544 -07 000000625 INF: FPGA: Recv ZDACR 29987
17-03-18 05:03:05.554 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:05.554 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:03:05.584 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:03:05.584 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:03:05.584 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:05.594 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:05.594 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:03:05.594 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:03:05.594 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:03:05.594 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:05.594 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:05.604 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:03:05.704 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:05.704 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:03:05.904 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:03:05.904 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:03:05.954 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:05.964 -07 000000569 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:03:05.964 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:05.964 -07 000000581 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:05.964 -07 000000581 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:03:05.964 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.205 mm/sec
17-03-18 05:03:06.724 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:06.914 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:06.914 -07 000000618 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:03:06.924 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:06.924 -07 000000581 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:06.954 -07 000000581 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:06.954 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:06.954 -07 000000581 INF: Y Motor: Moved to 65.7134 after 1453 ms (table move)
17-03-18 05:03:06.964 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137272 mm (DAC = 29987)
17-03-18 05:03:06.964 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:06.964 -07 000000447 INF: FPGA: Recv ZSGSRD 30666
17-03-18 05:03:06.974 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:06.974 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:06.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30658
17-03-18 05:03:06.984 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:06.984 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:06.984 -07 000000581 INF: FPGA: Recv ZSGSRD 30659
17-03-18 05:03:06.994 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:06.994 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:06.994 -07 000000382 INF: FPGA: Recv ZSGSRD 30654
17-03-18 05:03:07.004 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.004 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:07.004 -07 000000501 INF: FPGA: Recv ZSGSRD 30659
17-03-18 05:03:07.014 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.014 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:07.014 -07 000000461 INF: FPGA: Recv ZSGSRD 30657
17-03-18 05:03:07.024 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.024 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:07.024 -07 000000479 INF: FPGA: Recv ZSGSRD 30660
17-03-18 05:03:07.034 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:07.034 -07 000000581 INF: FPGA: Recv ZSGSRD 30663
17-03-18 05:03:07.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:07.044 -07 000000382 INF: FPGA: Recv ZSGSRD 30658
17-03-18 05:03:07.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:07.054 -07 000000501 INF: FPGA: Recv ZSGSRD 30660
17-03-18 05:03:07.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.064 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:07.064 -07 000000569 INF: FPGA: Recv ZPIEZORD 26452
17-03-18 05:03:07.074 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:07.074 -07 000000626 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.2 V.
17-03-18 05:03:07.074 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30659 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30659 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30666 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:07.074 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30659, posNoise = 7, negNoise = 5
17-03-18 05:03:07.074 -07 000000626 INF: Z Motor: After move to -0.137272, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:07.074 -07 000000626 INF: Z Motor: Settle wait time = 1457 ms, measure time = 110 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:03:07.074 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:07.114 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 05:03:07.114 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:07.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:07.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:07.114 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:07.114 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:07.114 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:07.114 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:07.114 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:07.114 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:07.124 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:07.124 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:07.124 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:07.124 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:03:07.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:07.174 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:07.474 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:07.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:07.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:07.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:07.514 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:07.514 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:07.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:03:07.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:03:07.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:07.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:07.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:03:07.614 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:07.614 -07 000000618 INF: Autofocus start
17-03-18 05:03:07.614 -07 000000618 INF: MeasureProfile start
17-03-18 05:03:07.614 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:07.624 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:07.624 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:07.634 -07 000000618 INF: MeasureProfile done
17-03-18 05:03:07.634 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:03:07.634 -07 000000618 INF: Autofocus finished
17-03-18 05:03:07.824 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:07.824 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:03:07.834 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137283272065384. ----------
17-03-18 05:03:07.834 -07 000000610 INF: Cycle	132	Tile	8	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:07.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28494, sync = True, waitForSettling = True)
17-03-18 05:03:07.834 -07 000000610 INF: Z Motor: Moving to -0.130437 mm, started at -0.137283 mm, distance = 6.85 um
17-03-18 05:03:07.834 -07 000000610 INF: FPGA: Xmit ZDACW 28494\n [Z Motor]
17-03-18 05:03:07.844 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:03:07.844 -07 000000610 INF: FPGA: 'ZDACW 28494' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:03:07.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:07.844 -07 000000502 INF: FPGA: Recv ZDACR 28494
17-03-18 05:03:07.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:03:07.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.004 -07 000000625 INF: FPGA: Recv ZSGSRD 29593
17-03-18 05:03:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.014 -07 000000512 INF: FPGA: Recv ZSGSRD 29596
17-03-18 05:03:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.024 -07 000000606 INF: FPGA: Recv ZSGSRD 29596
17-03-18 05:03:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.034 -07 000000608 INF: FPGA: Recv ZSGSRD 29593
17-03-18 05:03:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.054 -07 000000479 INF: FPGA: Recv ZSGSRD 29598
17-03-18 05:03:08.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:08.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29597
17-03-18 05:03:08.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.074 -07 000000424 INF: FPGA: Recv ZSGSRD 29594
17-03-18 05:03:08.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.084 -07 000000447 INF: FPGA: Recv ZSGSRD 29593
17-03-18 05:03:08.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.094 -07 000000626 INF: FPGA: Recv ZSGSRD 29591
17-03-18 05:03:08.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:08.104 -07 000000581 INF: FPGA: Recv ZSGSRD 29607
17-03-18 05:03:08.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:08.114 -07 000000461 INF: FPGA: Recv ZPIEZORD 25038
17-03-18 05:03:08.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:08.124 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 05:03:08.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29596 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29595 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29591 (-129.6 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:08.124 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29596, posNoise = 11, negNoise = 5
17-03-18 05:03:08.124 -07 000000610 INF: Z Motor: After move to -0.130437, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:08.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:03:08.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:08.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:08.124 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:08.124 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:08.124 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:08.124 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:08.124 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:08.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:08.124 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:08.124 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:08.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:08.124 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:08.134 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:03:08.134 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:08.134 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:08.134 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:08.144 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:03:08.144 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:03:08.144 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:03:08.144 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:03:08.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28671 150\n [Camera]
17-03-18 05:03:08.354 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:08.674 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.988112,
17-03-18 05:03:08.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:08.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:08.784 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:08.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:08.784 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:08.784 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:08.794 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:08.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:08.794 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:08.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:08.974 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28671 816
17-03-18 05:03:09.124 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:09.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:03:09.194 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:03:09.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:09.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:03:09.194 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:03:09.194 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:09.194 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:09.194 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:03:09.194 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:09.204 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:03:09.334 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:09.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:09.334 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:09.334 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:09.334 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:03:09.334 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:09.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:09.334 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:09.334 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:09.334 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:03:09.524 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:09.524 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:09.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28671 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-18 05:03:09.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:09.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130454334558692. ------
17-03-18 05:03:09.534 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:09.534 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13682 mm
17-03-18 05:03:09.534 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:09.534 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:09.534 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29889, sync = True, waitForSettling = False)
17-03-18 05:03:09.534 -07 000000581 INF: Z Motor: Moving to -0.136823 mm, started at -0.130454 mm, distance = -6.37 um
17-03-18 05:03:09.534 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:03:09.534 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:03:09.544 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:03:09.544 -07 000000581 INF: FPGA: Xmit ZDACW 29889\n [Z Motor]
17-03-18 05:03:09.544 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:03:09.554 -07 000000581 INF: FPGA: 'ZDACW 29889' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:03:09.554 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:09.554 -07 000000480 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:03:09.564 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:09.564 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:03:09.564 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:09.564 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:09.564 -07 000000625 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:03:09.574 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:09.574 -07 000000480 INF: FPGA: Recv ZDACR 29889
17-03-18 05:03:09.584 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:09.584 -07 000000581 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:03:09.584 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:09.734 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:03:09.734 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:03:09.734 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:09.734 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:09.734 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:03:09.734 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:03:09.734 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:09.744 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:03:09.744 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:03:09.744 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:03:09.764 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:09.764 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:03:09.954 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:03:09.954 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:03:10.004 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:10.014 -07 000000479 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:03:10.014 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:10.014 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:10.014 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:03:10.014 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-18 05:03:10.964 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:10.964 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:03:10.974 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:10.974 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:11.004 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:11.004 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:11.004 -07 000000625 INF: Y Motor: Moved to 66.5386 after 1468 ms (table move)
17-03-18 05:03:11.004 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136823 mm (DAC = 29889)
17-03-18 05:03:11.004 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.014 -07 000000461 INF: FPGA: Recv ZSGSRD 30594
17-03-18 05:03:11.014 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:03:11.014 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.014 -07 000000467 INF: FPGA: Recv ZSGSRD 30592
17-03-18 05:03:11.024 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.024 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.024 -07 000000502 INF: FPGA: Recv ZSGSRD 30588
17-03-18 05:03:11.034 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.034 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.034 -07 000000447 INF: FPGA: Recv ZSGSRD 30583
17-03-18 05:03:11.044 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.044 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.044 -07 000000424 INF: FPGA: Recv ZSGSRD 30584
17-03-18 05:03:11.054 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.054 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.054 -07 000000569 INF: FPGA: Recv ZSGSRD 30584
17-03-18 05:03:11.064 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.064 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.064 -07 000000608 INF: FPGA: Recv ZSGSRD 30583
17-03-18 05:03:11.074 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.074 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.074 -07 000000382 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:03:11.084 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.084 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.084 -07 000000618 INF: FPGA: Recv ZSGSRD 30595
17-03-18 05:03:11.094 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.094 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:11.094 -07 000000625 INF: FPGA: Recv ZSGSRD 30594
17-03-18 05:03:11.104 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.104 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:11.104 -07 000000479 INF: FPGA: Recv ZPIEZORD 26381
17-03-18 05:03:11.114 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.114 -07 000000579 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.3 V.
17-03-18 05:03:11.114 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30588 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30588 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30583 (-136.0 uncal um), Max = 30595 (-136.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:11.114 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30588, posNoise = 7, negNoise = 5
17-03-18 05:03:11.114 -07 000000579 INF: Z Motor: After move to -0.136823, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:11.114 -07 000000579 INF: Z Motor: Settle wait time = 1471 ms, measure time = 104 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:03:11.114 -07 000000579 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:11.164 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:03:11.164 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:11.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:11.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:11.164 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:11.164 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:11.164 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:11.174 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:11.174 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:11.174 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:11.174 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:11.174 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:11.174 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:11.174 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:03:11.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:11.224 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:11.524 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:11.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:11.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:11.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:03:11.564 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:11.564 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:11.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:03:11.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:03:11.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:11.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:11.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:03:11.664 -07 000000579 INF: Autofocus start
17-03-18 05:03:11.664 -07 000000579 INF: MeasureProfile start
17-03-18 05:03:11.664 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:11.664 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:11.674 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:11.674 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:11.674 -07 000000579 INF: MeasureProfile done
17-03-18 05:03:11.674 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:03:11.674 -07 000000579 INF: Autofocus finished
17-03-18 05:03:11.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:11.874 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:11.874 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:11.874 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136827153003319. ----------
17-03-18 05:03:11.874 -07 000000610 INF: Cycle	132	Tile	9	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:11.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28396, sync = True, waitForSettling = True)
17-03-18 05:03:11.884 -07 000000610 INF: Z Motor: Moving to -0.129989 mm, started at -0.136827 mm, distance = 6.84 um
17-03-18 05:03:11.884 -07 000000610 INF: FPGA: Xmit ZDACW 28396\n [Z Motor]
17-03-18 05:03:11.884 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:03:11.894 -07 000000610 INF: FPGA: 'ZDACW 28396' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:11.894 -07 000000424 INF: FPGA: Recv ZDACR 28396
17-03-18 05:03:11.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:11.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:12.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.054 -07 000000625 INF: FPGA: Recv ZSGSRD 29523
17-03-18 05:03:12.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:12.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.064 -07 000000479 INF: FPGA: Recv ZSGSRD 29521
17-03-18 05:03:12.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.074 -07 000000579 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:03:12.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.084 -07 000000467 INF: FPGA: Recv ZSGSRD 29526
17-03-18 05:03:12.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.094 -07 000000569 INF: FPGA: Recv ZSGSRD 29526
17-03-18 05:03:12.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.104 -07 000000461 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:03:12.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.114 -07 000000501 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:03:12.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.124 -07 000000424 INF: FPGA: Recv ZSGSRD 29526
17-03-18 05:03:12.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:03:12.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:12.144 -07 000000479 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:03:12.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:12.154 -07 000000618 INF: FPGA: Recv ZPIEZORD 24936
17-03-18 05:03:12.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:12.164 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.1 V.
17-03-18 05:03:12.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29524 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29521 (-129.2 uncal um), Max = 29526 (-129.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:03:12.164 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29524, posNoise = 2, negNoise = 3
17-03-18 05:03:12.164 -07 000000610 INF: Z Motor: After move to -0.129989, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:12.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:03:12.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:12.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:12.164 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:12.164 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:12.164 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:12.164 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:12.164 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:12.164 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:12.164 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:12.164 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:12.164 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:12.164 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:12.174 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:12.174 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:12.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:12.174 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:12.184 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:03:12.184 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:03:12.184 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:03:12.184 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:03:12.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28573 150\n [Camera]
17-03-18 05:03:12.384 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:12.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:12.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:12.814 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:12.814 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:12.814 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:03:12.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:12.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:12.824 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:12.824 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:12.824 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:03:13.014 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28573 816
17-03-18 05:03:13.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:13.214 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:03:13.214 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:03:13.214 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:13.214 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:03:13.214 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:03:13.214 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:13.214 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:13.214 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:03:13.214 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:13.224 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:03:13.364 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:13.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:13.364 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:13.364 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:13.364 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:03:13.374 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:13.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:13.374 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:13.374 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:13.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:03:13.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:13.554 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:13.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28573 150' command took 2 ms to send, 1369 ms to get response, and 1373 ms overall
17-03-18 05:03:13.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:13.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.129991791284486. ------
17-03-18 05:03:13.564 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:13.564 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13676 mm
17-03-18 05:03:13.564 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:13.564 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29874, sync = True, waitForSettling = False)
17-03-18 05:03:13.564 -07 000000502 INF: Z Motor: Moving to -0.136754 mm, started at -0.129992 mm, distance = -6.76 um
17-03-18 05:03:13.564 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:13.564 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:03:13.564 -07 000000625 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:03:13.574 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:13.574 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:13.574 -07 000000569 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:03:13.584 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:03:13.584 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:13.584 -07 000000625 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:13.584 -07 000000625 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:03:13.584 -07 000000502 INF: FPGA: Xmit ZDACW 29874\n [Z Motor]
17-03-18 05:03:13.584 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:03:13.594 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:13.594 -07 000000502 INF: FPGA: 'ZDACW 29874' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:03:13.714 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:13.724 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:13.724 -07 000000608 INF: FPGA: Recv ZDACR 29874
17-03-18 05:03:13.734 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:13.734 -07 000000502 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 05:03:13.764 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:03:13.764 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:03:13.764 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:13.774 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:03:13.774 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:03:13.774 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:13.774 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:03:13.774 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:03:13.774 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:13.784 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:03:13.794 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:13.794 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 82 ms to get response, and 222 ms overall
17-03-18 05:03:14.064 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.996267,
17-03-18 05:03:14.084 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:03:14.084 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 508 ms overall
17-03-18 05:03:14.134 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:14.144 -07 000000424 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:03:14.154 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:14.154 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:14.154 -07 000000625 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:03:14.154 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 508 ms, distance = 0.844 mm, average velocity = 1.661 mm/sec
17-03-18 05:03:15.104 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:15.104 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:03:15.114 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:15.114 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:15.144 -07 000000625 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:15.144 -07 000000625 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:15.144 -07 000000625 INF: Y Motor: Moved to 67.3711 after 1573 ms (table move)
17-03-18 05:03:15.144 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136754 mm (DAC = 29874)
17-03-18 05:03:15.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.144 -07 000000382 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:03:15.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:15.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.154 -07 000000569 INF: FPGA: Recv ZSGSRD 30573
17-03-18 05:03:15.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.164 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.164 -07 000000581 INF: FPGA: Recv ZSGSRD 30572
17-03-18 05:03:15.174 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.174 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.174 -07 000000480 INF: FPGA: Recv ZSGSRD 30576
17-03-18 05:03:15.184 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.184 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.184 -07 000000467 INF: FPGA: Recv ZSGSRD 30576
17-03-18 05:03:15.194 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.194 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.194 -07 000000618 INF: FPGA: Recv ZSGSRD 30577
17-03-18 05:03:15.204 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.204 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.204 -07 000000579 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:03:15.214 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.214 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.214 -07 000000606 INF: FPGA: Recv ZSGSRD 30583
17-03-18 05:03:15.224 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.224 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30577
17-03-18 05:03:15.234 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.234 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:15.234 -07 000000626 INF: FPGA: Recv ZSGSRD 30577
17-03-18 05:03:15.244 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.244 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:15.244 -07 000000618 INF: FPGA: Recv ZPIEZORD 26353
17-03-18 05:03:15.254 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:15.254 -07 000000461 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.3 V.
17-03-18 05:03:15.254 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30577 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30577 (-136.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30572 (-135.9 uncal um), Max = 30583 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:15.254 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30577, posNoise = 6, negNoise = 5
17-03-18 05:03:15.254 -07 000000461 INF: Z Motor: After move to -0.136754, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:15.254 -07 000000461 INF: Z Motor: Settle wait time = 1577 ms, measure time = 105 ms (allowed 150 ms), total time = 1682 ms
17-03-18 05:03:15.254 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:15.304 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:03:15.304 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:15.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:15.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:15.304 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:15.304 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:15.304 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:15.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:15.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:15.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:15.314 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:15.314 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:15.314 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:15.314 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:03:15.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:15.364 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:15.664 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:15.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:15.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:15.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:15.704 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:15.704 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:15.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:03:15.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:03:15.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:15.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:15.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:03:15.804 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:15.804 -07 000000569 INF: Autofocus start
17-03-18 05:03:15.804 -07 000000569 INF: MeasureProfile start
17-03-18 05:03:15.804 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:15.814 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:15.814 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:15.814 -07 000000569 INF: MeasureProfile done
17-03-18 05:03:15.814 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:03:15.814 -07 000000569 INF: Autofocus finished
17-03-18 05:03:16.014 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:16.014 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:16.014 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13675648666976. ----------
17-03-18 05:03:16.024 -07 000000610 INF: Cycle	132	Tile	10	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:16.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28382, sync = True, waitForSettling = True)
17-03-18 05:03:16.024 -07 000000610 INF: Z Motor: Moving to -0.129924 mm, started at -0.136756 mm, distance = 6.83 um
17-03-18 05:03:16.024 -07 000000610 INF: FPGA: Xmit ZDACW 28382\n [Z Motor]
17-03-18 05:03:16.024 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:03:16.034 -07 000000610 INF: FPGA: 'ZDACW 28382' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:16.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:16.034 -07 000000581 INF: FPGA: Recv ZDACR 28382
17-03-18 05:03:16.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:16.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.194 -07 000000480 INF: FPGA: Recv ZSGSRD 29517
17-03-18 05:03:16.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:16.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.204 -07 000000467 INF: FPGA: Recv ZSGSRD 29520
17-03-18 05:03:16.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.214 -07 000000625 INF: FPGA: Recv ZSGSRD 29510
17-03-18 05:03:16.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.224 -07 000000626 INF: FPGA: Recv ZSGSRD 29518
17-03-18 05:03:16.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.234 -07 000000455 INF: FPGA: Recv ZSGSRD 29511
17-03-18 05:03:16.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.244 -07 000000579 INF: FPGA: Recv ZSGSRD 29511
17-03-18 05:03:16.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.254 -07 000000461 INF: FPGA: Recv ZSGSRD 29506
17-03-18 05:03:16.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.264 -07 000000608 INF: FPGA: Recv ZSGSRD 29512
17-03-18 05:03:16.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.274 -07 000000569 INF: FPGA: Recv ZSGSRD 29519
17-03-18 05:03:16.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:16.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29513
17-03-18 05:03:16.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:16.294 -07 000000474 INF: FPGA: Recv ZPIEZORD 24967
17-03-18 05:03:16.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:16.304 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -10.0 V.
17-03-18 05:03:16.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29514 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29506 (-129.1 uncal um), Max = 29520 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:03:16.304 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29514, posNoise = 6, negNoise = 8
17-03-18 05:03:16.304 -07 000000610 INF: Z Motor: After move to -0.129924, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:16.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 05:03:16.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:16.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:16.304 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:16.304 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:16.304 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:16.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:16.304 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:16.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:16.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:16.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:16.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:16.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:16.314 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:16.314 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:16.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:16.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:16.324 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:16.324 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:03:16.324 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:16.324 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:03:16.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28558 150\n [Camera]
17-03-18 05:03:16.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:16.724 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:16.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:16.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:16.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:16.964 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:16.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:16.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:16.964 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:16.964 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:16.964 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:16.964 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:16.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:17.154 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28558 816
17-03-18 05:03:17.304 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:17.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:03:17.344 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:03:17.344 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:17.354 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:17.354 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:03:17.354 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:03:17.354 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:17.354 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:17.354 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:03:17.354 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:03:17.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:03:17.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:03:17.514 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:17.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:03:17.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:03:17.514 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:17.524 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:17.524 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:03:17.524 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:17.524 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:03:17.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:03:17.704 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:17.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28558 150' command took 2 ms to send, 1362 ms to get response, and 1373 ms overall
17-03-18 05:03:17.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:17.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.129927549163068. ------
17-03-18 05:03:17.704 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:17.704 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13627 mm
17-03-18 05:03:17.704 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:17.824 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:17.824 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 05:03:17.824 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:17.824 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29767, sync = True, waitForSettling = False)
17-03-18 05:03:17.824 -07 000000382 INF: Z Motor: Moving to -0.136265 mm, started at -0.129928 mm, distance = -6.34 um
17-03-18 05:03:17.824 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:03:17.824 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:03:17.834 -07 000000382 INF: FPGA: Xmit ZDACW 29767\n [Z Motor]
17-03-18 05:03:17.834 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:03:17.844 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:17.844 -07 000000382 INF: FPGA: 'ZDACW 29767' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:03:17.844 -07 000000512 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:03:17.854 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:03:17.854 -07 000000467 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:17.854 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:17.854 -07 000000606 INF: FPGA: Recv ZDACR 29767
17-03-18 05:03:17.864 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:17.864 -07 000000467 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:03:17.864 -07 000000382 INF: FPGA: 'ZDACR' command took 6 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:17.864 -07 000000382 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:03:17.864 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:17.914 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:03:17.914 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:03:17.914 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:17.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:03:17.914 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:03:17.914 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:17.924 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:17.924 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:03:17.924 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:17.924 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:03:18.024 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:18.024 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 05:03:18.234 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:03:18.234 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 05:03:18.284 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:18.294 -07 000000569 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:03:18.294 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:03:18.294 -07 000000467 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:18.294 -07 000000467 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:03:18.294 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.842 mm, average velocity = 2.226 mm/sec
17-03-18 05:03:19.244 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:19.244 -07 000000618 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:03:19.254 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:19.254 -07 000000467 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:19.284 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:19.284 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:19.284 -07 000000467 INF: Y Motor: Moved to 68.2041 after 1453 ms (table move)
17-03-18 05:03:19.284 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136265 mm (DAC = 29767)
17-03-18 05:03:19.284 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.284 -07 000000626 INF: FPGA: Recv ZSGSRD 30503
17-03-18 05:03:19.294 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:19.294 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.294 -07 000000455 INF: FPGA: Recv ZSGSRD 30501
17-03-18 05:03:19.304 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30499
17-03-18 05:03:19.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30499
17-03-18 05:03:19.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.324 -07 000000479 INF: FPGA: Recv ZSGSRD 30493
17-03-18 05:03:19.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.334 -07 000000626 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:03:19.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.344 -07 000000581 INF: FPGA: Recv ZSGSRD 30497
17-03-18 05:03:19.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.354 -07 000000512 INF: FPGA: Recv ZSGSRD 30497
17-03-18 05:03:19.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.364 -07 000000461 INF: FPGA: Recv ZSGSRD 30503
17-03-18 05:03:19.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:19.374 -07 000000479 INF: FPGA: Recv ZSGSRD 30498
17-03-18 05:03:19.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.384 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:19.384 -07 000000480 INF: FPGA: Recv ZPIEZORD 26281
17-03-18 05:03:19.394 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:19.394 -07 000000447 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.3 V.
17-03-18 05:03:19.394 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30500 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30499 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30493 (-135.4 uncal um), Max = 30505 (-135.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:03:19.394 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30500, posNoise = 5, negNoise = 7
17-03-18 05:03:19.394 -07 000000447 INF: Z Motor: After move to -0.136265, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:19.394 -07 000000447 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:03:19.394 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:19.444 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 05:03:19.444 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:19.444 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.989471,
17-03-18 05:03:19.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:19.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:19.444 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:19.454 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:19.454 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:19.454 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:19.454 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:19.454 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:19.454 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:19.454 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:19.464 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:19.464 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:03:19.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:19.524 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:19.824 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:19.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:19.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:19.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:19.864 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:19.864 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:19.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 400 ms overall
17-03-18 05:03:19.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:03:19.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:19.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:03:19.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:03:19.964 -07 000000512 INF: Autofocus start
17-03-18 05:03:19.964 -07 000000512 INF: MeasureProfile start
17-03-18 05:03:19.964 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:19.964 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:19.974 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:19.974 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:19.974 -07 000000512 INF: MeasureProfile done
17-03-18 05:03:19.974 -07 000000512 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:03:19.974 -07 000000512 INF: Autofocus finished
17-03-18 05:03:20.174 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:20.174 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:20.174 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136261822334844. ----------
17-03-18 05:03:20.184 -07 000000610 INF: Cycle	132	Tile	11	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:20.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28308, sync = True, waitForSettling = True)
17-03-18 05:03:20.184 -07 000000610 INF: Z Motor: Moving to -0.129586 mm, started at -0.136262 mm, distance = 6.68 um
17-03-18 05:03:20.184 -07 000000610 INF: FPGA: Xmit ZDACW 28308\n [Z Motor]
17-03-18 05:03:20.184 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:03:20.194 -07 000000610 INF: FPGA: 'ZDACW 28308' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:20.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:20.194 -07 000000608 INF: FPGA: Recv ZDACR 28308
17-03-18 05:03:20.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:20.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.354 -07 000000461 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:03:20.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:20.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.364 -07 000000474 INF: FPGA: Recv ZSGSRD 29463
17-03-18 05:03:20.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.374 -07 000000501 INF: FPGA: Recv ZSGSRD 29453
17-03-18 05:03:20.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29464
17-03-18 05:03:20.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.394 -07 000000618 INF: FPGA: Recv ZSGSRD 29468
17-03-18 05:03:20.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.404 -07 000000579 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:03:20.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.414 -07 000000581 INF: FPGA: Recv ZSGSRD 29461
17-03-18 05:03:20.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.424 -07 000000626 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:03:20.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.434 -07 000000474 INF: FPGA: Recv ZSGSRD 29462
17-03-18 05:03:20.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:20.444 -07 000000618 INF: FPGA: Recv ZSGSRD 29460
17-03-18 05:03:20.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:20.454 -07 000000502 INF: FPGA: Recv ZPIEZORD 24915
17-03-18 05:03:20.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:20.464 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -10.0 V.
17-03-18 05:03:20.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29462 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29462 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29453 (-128.8 uncal um), Max = 29468 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:03:20.464 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29462, posNoise = 6, negNoise = 9
17-03-18 05:03:20.464 -07 000000610 INF: Z Motor: After move to -0.129586, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:20.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:03:20.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:20.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:20.474 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:20.474 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:20.474 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:20.474 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:20.474 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:20.474 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:20.474 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:03:20.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:20.474 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:20.474 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:20.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:20.474 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:20.484 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:20.484 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:20.494 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:03:20.494 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:03:20.494 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:03:20.494 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 05:03:20.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28485 150\n [Camera]
17-03-18 05:03:20.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:21.134 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:21.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:21.134 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:21.134 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:21.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:21.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:21.134 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:21.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:21.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:21.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:21.324 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28485 816
17-03-18 05:03:21.474 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:21.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:03:21.534 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:03:21.534 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:21.534 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:21.534 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:03:21.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:03:21.534 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:03:21.534 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:21.534 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:21.544 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:03:21.684 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:21.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:21.684 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:21.684 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:21.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:03:21.684 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:21.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:21.684 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:21.684 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:21.684 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:03:21.724 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:21.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:21.874 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:21.874 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:21.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28485 150' command took 2 ms to send, 1363 ms to get response, and 1373 ms overall
17-03-18 05:03:21.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:21.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129593490131696. ------
17-03-18 05:03:21.874 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:21.874 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13628 mm
17-03-18 05:03:21.874 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:21.884 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:21.884 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:03:21.884 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29770, sync = True, waitForSettling = False)
17-03-18 05:03:21.884 -07 000000461 INF: Z Motor: Moving to -0.136278 mm, started at -0.129593 mm, distance = -6.68 um
17-03-18 05:03:21.884 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:21.884 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:03:21.884 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:03:21.894 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:21.894 -07 000000382 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:03:21.904 -07 000000461 INF: FPGA: Xmit ZDACW 29770\n [Z Motor]
17-03-18 05:03:21.904 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:03:21.904 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:21.904 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:03:21.904 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:21.904 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:03:21.914 -07 000000461 INF: FPGA: 'ZDACW 29770' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:03:21.914 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:21.924 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:21.924 -07 000000608 INF: FPGA: Recv ZDACR 29770
17-03-18 05:03:21.934 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:21.934 -07 000000461 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:03:22.084 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:03:22.084 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:03:22.084 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:22.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:03:22.084 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:03:22.084 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:22.084 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:22.084 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 198 ms to get response, and 203 ms overall
17-03-18 05:03:22.094 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:22.094 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:03:22.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:03:22.094 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:03:22.284 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:03:22.284 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 05:03:22.334 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:22.344 -07 000000618 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:03:22.344 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:22.344 -07 000000480 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:22.344 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:03:22.344 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.195 mm/sec
17-03-18 05:03:23.294 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:23.294 -07 000000579 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:03:23.304 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:23.304 -07 000000480 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:23.334 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:23.334 -07 000000480 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:23.334 -07 000000480 INF: Y Motor: Moved to 69.0264 after 1453 ms (table move)
17-03-18 05:03:23.344 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136278 mm (DAC = 29770)
17-03-18 05:03:23.344 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.344 -07 000000502 INF: FPGA: Recv ZSGSRD 30500
17-03-18 05:03:23.354 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:23.354 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.354 -07 000000447 INF: FPGA: Recv ZSGSRD 30503
17-03-18 05:03:23.364 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.364 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.364 -07 000000461 INF: FPGA: Recv ZSGSRD 30496
17-03-18 05:03:23.374 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.374 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.374 -07 000000455 INF: FPGA: Recv ZSGSRD 30500
17-03-18 05:03:23.384 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.384 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.384 -07 000000480 INF: FPGA: Recv ZSGSRD 30506
17-03-18 05:03:23.394 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.394 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.394 -07 000000581 INF: FPGA: Recv ZSGSRD 30502
17-03-18 05:03:23.404 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.404 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.404 -07 000000608 INF: FPGA: Recv ZSGSRD 30503
17-03-18 05:03:23.414 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.414 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.414 -07 000000618 INF: FPGA: Recv ZSGSRD 30503
17-03-18 05:03:23.424 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.424 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.424 -07 000000455 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:03:23.434 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.434 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:23.434 -07 000000480 INF: FPGA: Recv ZSGSRD 30506
17-03-18 05:03:23.444 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.444 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:23.444 -07 000000579 INF: FPGA: Recv ZPIEZORD 26242
17-03-18 05:03:23.454 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:23.454 -07 000000625 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.4 V.
17-03-18 05:03:23.454 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30502 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30503 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30496 (-135.4 uncal um), Max = 30506 (-135.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:03:23.454 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30502, posNoise = 4, negNoise = 6
17-03-18 05:03:23.454 -07 000000625 INF: Z Motor: After move to -0.136278, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:23.454 -07 000000625 INF: Z Motor: Settle wait time = 1457 ms, measure time = 108 ms (allowed 150 ms), total time = 1565 ms
17-03-18 05:03:23.454 -07 000000625 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:23.504 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:03:23.504 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:23.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:23.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:23.504 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:23.504 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:23.504 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:23.504 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:23.504 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:23.514 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:23.514 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:23.514 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:23.514 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:23.514 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:03:23.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:23.564 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:23.864 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:23.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:23.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:23.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:03:23.904 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:23.904 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:23.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:03:23.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:03:23.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:23.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:23.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:03:24.004 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:24.004 -07 000000447 INF: Autofocus start
17-03-18 05:03:24.004 -07 000000447 INF: MeasureProfile start
17-03-18 05:03:24.004 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:24.014 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:24.014 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:24.014 -07 000000447 INF: MeasureProfile done
17-03-18 05:03:24.014 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:03:24.014 -07 000000447 INF: Autofocus finished
17-03-18 05:03:24.214 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:24.214 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:03:24.224 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136274670759128. ----------
17-03-18 05:03:24.224 -07 000000610 INF: Cycle	132	Tile	12	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:24.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28277, sync = True, waitForSettling = True)
17-03-18 05:03:24.224 -07 000000610 INF: Z Motor: Moving to -0.129444 mm, started at -0.136275 mm, distance = 6.83 um
17-03-18 05:03:24.224 -07 000000610 INF: FPGA: Xmit ZDACW 28277\n [Z Motor]
17-03-18 05:03:24.224 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:03:24.234 -07 000000610 INF: FPGA: 'ZDACW 28277' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:24.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:24.234 -07 000000625 INF: FPGA: Recv ZDACR 28277
17-03-18 05:03:24.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:24.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.394 -07 000000382 INF: FPGA: Recv ZSGSRD 29443
17-03-18 05:03:24.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:24.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.404 -07 000000474 INF: FPGA: Recv ZSGSRD 29437
17-03-18 05:03:24.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.414 -07 000000569 INF: FPGA: Recv ZSGSRD 29445
17-03-18 05:03:24.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.424 -07 000000455 INF: FPGA: Recv ZSGSRD 29436
17-03-18 05:03:24.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.434 -07 000000501 INF: FPGA: Recv ZSGSRD 29444
17-03-18 05:03:24.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29441
17-03-18 05:03:24.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.454 -07 000000479 INF: FPGA: Recv ZSGSRD 29437
17-03-18 05:03:24.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.464 -07 000000447 INF: FPGA: Recv ZSGSRD 29444
17-03-18 05:03:24.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.484 -07 000000606 INF: FPGA: Recv ZSGSRD 29438
17-03-18 05:03:24.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:24.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:24.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:03:24.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:24.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:24.524 -07 000000424 INF: FPGA: Recv ZPIEZORD 24881
17-03-18 05:03:24.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:24.534 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.315 V. Piezo Error = -10.0 V.
17-03-18 05:03:24.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29440 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29436 (-128.6 uncal um), Max = 29445 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:03:24.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29440, posNoise = 5, negNoise = 4
17-03-18 05:03:24.534 -07 000000610 INF: Z Motor: After move to -0.129444, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:24.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-18 05:03:24.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:24.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:24.534 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:24.534 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:24.534 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:24.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:24.534 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:24.534 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:24.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:24.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:24.534 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:24.534 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:24.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:24.534 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:03:24.534 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:24.534 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:24.544 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:24.544 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:24.544 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:03:24.544 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:03:24.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28454 150\n [Camera]
17-03-18 05:03:24.754 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:24.824 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.030322,
17-03-18 05:03:25.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:25.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:25.194 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:25.194 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:25.194 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:03:25.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:25.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:25.194 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:25.194 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:25.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:03:25.384 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28454 816
17-03-18 05:03:25.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:25.594 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:03:25.594 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:03:25.594 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:25.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:03:25.594 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:03:25.594 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:25.594 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:25.594 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:03:25.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:25.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:03:25.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:25.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:25.744 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:25.744 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:25.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:03:25.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:25.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:25.744 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:25.744 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:25.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:03:25.934 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:25.934 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:25.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28454 150' command took 2 ms to send, 1363 ms to get response, and 1380 ms overall
17-03-18 05:03:26.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:26.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129452157464578. ------
17-03-18 05:03:26.054 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:26.054 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13602 mm
17-03-18 05:03:26.054 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:26.064 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:03:26.064 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:26.064 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:03:26.064 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:03:26.064 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:26.064 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29714, sync = True, waitForSettling = False)
17-03-18 05:03:26.064 -07 000000461 INF: Z Motor: Moving to -0.136022 mm, started at -0.129452 mm, distance = -6.57 um
17-03-18 05:03:26.064 -07 000000625 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:03:26.074 -07 000000461 INF: FPGA: Xmit ZDACW 29714\n [Z Motor]
17-03-18 05:03:26.074 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:03:26.074 -07 000000618 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:26.074 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:26.074 -07 000000618 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:03:26.074 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:03:26.084 -07 000000461 INF: FPGA: 'ZDACW 29714' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:03:26.084 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:26.094 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:26.104 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:26.104 -07 000000455 INF: FPGA: Recv ZDACR 29714
17-03-18 05:03:26.114 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:26.114 -07 000000461 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:03:26.144 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:03:26.144 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:03:26.144 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:26.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:03:26.144 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:03:26.144 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:26.144 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:26.154 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:03:26.154 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:03:26.154 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:03:26.284 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:26.284 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 05:03:26.464 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:03:26.464 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:03:26.514 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:26.524 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:03:26.524 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:03:26.524 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:26.524 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:03:26.524 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 05:03:26.724 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:26.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:27.474 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:27.474 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:03:27.484 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.484 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:27.514 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:27.514 -07 000000618 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:27.514 -07 000000618 INF: Y Motor: Moved to 69.8628 after 1450 ms (table move)
17-03-18 05:03:27.514 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136022 mm (DAC = 29714)
17-03-18 05:03:27.514 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.514 -07 000000569 INF: FPGA: Recv ZSGSRD 30467
17-03-18 05:03:27.524 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:27.524 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.524 -07 000000461 INF: FPGA: Recv ZSGSRD 30462
17-03-18 05:03:27.534 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.534 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.534 -07 000000480 INF: FPGA: Recv ZSGSRD 30468
17-03-18 05:03:27.544 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.544 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.544 -07 000000502 INF: FPGA: Recv ZSGSRD 30467
17-03-18 05:03:27.554 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.554 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.554 -07 000000625 INF: FPGA: Recv ZSGSRD 30460
17-03-18 05:03:27.564 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.564 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.564 -07 000000608 INF: FPGA: Recv ZSGSRD 30457
17-03-18 05:03:27.574 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.574 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.574 -07 000000479 INF: FPGA: Recv ZSGSRD 30459
17-03-18 05:03:27.584 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.584 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.584 -07 000000501 INF: FPGA: Recv ZSGSRD 30468
17-03-18 05:03:27.594 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.594 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.594 -07 000000606 INF: FPGA: Recv ZSGSRD 30460
17-03-18 05:03:27.604 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:27.604 -07 000000474 INF: FPGA: Recv ZSGSRD 30469
17-03-18 05:03:27.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.614 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:27.614 -07 000000626 INF: FPGA: Recv ZPIEZORD 26244
17-03-18 05:03:27.624 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:27.624 -07 000000447 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.3 V.
17-03-18 05:03:27.624 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30464 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30464 (-135.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30457 (-135.2 uncal um), Max = 30469 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:03:27.624 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30464, posNoise = 5, negNoise = 7
17-03-18 05:03:27.624 -07 000000447 INF: Z Motor: After move to -0.136022, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:27.624 -07 000000447 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 05:03:27.624 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:27.674 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:03:27.674 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:27.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:27.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:27.674 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:27.674 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:27.674 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:27.674 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:27.674 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:27.674 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:27.674 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:27.674 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:27.684 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:27.684 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:03:27.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:27.734 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:28.034 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:28.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:28.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:28.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:28.074 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:28.074 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:28.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:03:28.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:03:28.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:28.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:28.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:03:28.174 -07 000000447 INF: Autofocus start
17-03-18 05:03:28.174 -07 000000447 INF: MeasureProfile start
17-03-18 05:03:28.174 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:28.174 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:28.184 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:28.184 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:28.184 -07 000000447 INF: MeasureProfile done
17-03-18 05:03:28.184 -07 000000447 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:03:28.184 -07 000000447 INF: Autofocus finished
17-03-18 05:03:28.384 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:28.384 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:28.384 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136030550697741. ----------
17-03-18 05:03:28.384 -07 000000610 INF: Cycle	132	Tile	13	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:28.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28209, sync = True, waitForSettling = True)
17-03-18 05:03:28.394 -07 000000610 INF: Z Motor: Moving to -0.129133 mm, started at -0.136031 mm, distance = 6.90 um
17-03-18 05:03:28.394 -07 000000610 INF: FPGA: Xmit ZDACW 28209\n [Z Motor]
17-03-18 05:03:28.394 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:03:28.404 -07 000000610 INF: FPGA: 'ZDACW 28209' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:28.404 -07 000000579 INF: FPGA: Recv ZDACR 28209
17-03-18 05:03:28.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.564 -07 000000606 INF: FPGA: Recv ZSGSRD 29395
17-03-18 05:03:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:28.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.574 -07 000000608 INF: FPGA: Recv ZSGSRD 29392
17-03-18 05:03:28.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.584 -07 000000569 INF: FPGA: Recv ZSGSRD 29390
17-03-18 05:03:28.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29390
17-03-18 05:03:28.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29393
17-03-18 05:03:28.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.614 -07 000000461 INF: FPGA: Recv ZSGSRD 29390
17-03-18 05:03:28.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.624 -07 000000608 INF: FPGA: Recv ZSGSRD 29394
17-03-18 05:03:28.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.634 -07 000000467 INF: FPGA: Recv ZSGSRD 29399
17-03-18 05:03:28.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.644 -07 000000447 INF: FPGA: Recv ZSGSRD 29393
17-03-18 05:03:28.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:28.654 -07 000000626 INF: FPGA: Recv ZSGSRD 29392
17-03-18 05:03:28.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:28.664 -07 000000606 INF: FPGA: Recv ZPIEZORD 24836
17-03-18 05:03:28.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:28.674 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -10.0 V.
17-03-18 05:03:28.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29393 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29392 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29390 (-128.4 uncal um), Max = 29399 (-128.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:03:28.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29393, posNoise = 6, negNoise = 3
17-03-18 05:03:28.674 -07 000000610 INF: Z Motor: After move to -0.129133, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:28.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:03:28.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:28.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:28.674 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:28.674 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:28.674 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:28.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:28.674 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:28.674 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:28.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:03:28.674 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:28.674 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:28.674 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:28.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:28.684 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:28.684 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:28.684 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:28.694 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:28.694 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:03:28.694 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:28.694 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:03:28.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28386 150\n [Camera]
17-03-18 05:03:28.894 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:29.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:29.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:29.324 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:29.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:29.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:29.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:29.324 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:29.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:29.334 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:29.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:29.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28386 816
17-03-18 05:03:29.664 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:29.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:03:29.724 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:03:29.724 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:29.724 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:29.724 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:03:29.724 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:03:29.724 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:03:29.724 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:29.724 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:29.734 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:03:29.874 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:29.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:29.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:29.874 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:29.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:29.874 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:29.884 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:29.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:03:29.884 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:29.884 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:03:30.064 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:30.064 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:30.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28386 150' command took 2 ms to send, 1366 ms to get response, and 1373 ms overall
17-03-18 05:03:30.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:30.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129150219493915. ------
17-03-18 05:03:30.074 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:30.074 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13546 mm
17-03-18 05:03:30.074 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:30.074 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:03:30.074 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:03:30.074 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29591, sync = True, waitForSettling = False)
17-03-18 05:03:30.074 -07 000000480 INF: Z Motor: Moving to -0.135459 mm, started at -0.129150 mm, distance = -6.31 um
17-03-18 05:03:30.074 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:30.194 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:03:30.194 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:30.194 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:03:30.204 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 05:03:30.204 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:30.204 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:30.204 -07 000000626 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:03:30.214 -07 000000480 INF: FPGA: Xmit ZDACW 29591\n [Z Motor]
17-03-18 05:03:30.214 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.015368,
17-03-18 05:03:30.214 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:03:30.224 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:30.224 -07 000000480 INF: FPGA: 'ZDACW 29591' command took 0 ms to send, 0 ms to get response, and 144 ms overall
17-03-18 05:03:30.234 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:30.254 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:30.254 -07 000000467 INF: FPGA: Recv ZDACR 29591
17-03-18 05:03:30.264 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:03:30.264 -07 000000480 INF: Z Motor: MoveAbsStepped took 185 ms (did NOT wait for settling yet))
17-03-18 05:03:30.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:03:30.274 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:03:30.274 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:30.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:03:30.274 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:03:30.274 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:30.284 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:30.284 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:03:30.284 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:30.284 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:03:30.424 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:30.424 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 227 ms overall
17-03-18 05:03:30.604 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:03:30.604 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:03:30.654 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:30.664 -07 000000625 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:03:30.664 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:30.664 -07 000000626 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:30.664 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:03:30.664 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.840 mm, average velocity = 2.063 mm/sec
17-03-18 05:03:31.614 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:31.614 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:03:31.624 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:31.624 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:31.654 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:31.654 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:03:31.654 -07 000000626 INF: Y Motor: Moved to 70.6880 after 1576 ms (table move)
17-03-18 05:03:31.654 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135459 mm (DAC = 29591)
17-03-18 05:03:31.654 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.654 -07 000000606 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:03:31.664 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:31.664 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.664 -07 000000455 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:03:31.674 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.674 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.674 -07 000000608 INF: FPGA: Recv ZSGSRD 30373
17-03-18 05:03:31.684 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.684 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.684 -07 000000579 INF: FPGA: Recv ZSGSRD 30374
17-03-18 05:03:31.694 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.694 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.694 -07 000000479 INF: FPGA: Recv ZSGSRD 30372
17-03-18 05:03:31.704 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.704 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.704 -07 000000569 INF: FPGA: Recv ZSGSRD 30374
17-03-18 05:03:31.714 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.714 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.714 -07 000000512 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:03:31.724 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.724 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.724 -07 000000625 INF: FPGA: Recv ZSGSRD 30378
17-03-18 05:03:31.724 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:31.734 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.734 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.734 -07 000000512 INF: FPGA: Recv ZSGSRD 30375
17-03-18 05:03:31.744 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.744 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:31.744 -07 000000579 INF: FPGA: Recv ZSGSRD 30378
17-03-18 05:03:31.754 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.754 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:31.754 -07 000000581 INF: FPGA: Recv ZPIEZORD 26144
17-03-18 05:03:31.764 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:31.764 -07 000000502 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.515 V. Piezo Error = -9.3 V.
17-03-18 05:03:31.764 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30377 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30376 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30372 (-134.6 uncal um), Max = 30381 (-134.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:31.764 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30377, posNoise = 4, negNoise = 5
17-03-18 05:03:31.764 -07 000000502 INF: Z Motor: After move to -0.135459, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:31.764 -07 000000502 INF: Z Motor: Settle wait time = 1580 ms, measure time = 105 ms (allowed 150 ms), total time = 1685 ms
17-03-18 05:03:31.764 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:31.814 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 05:03:31.814 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:31.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:31.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:31.814 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:31.814 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:31.814 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:31.814 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:31.814 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:31.814 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:31.824 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:31.824 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:31.834 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:03:31.834 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:03:31.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:31.884 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:32.174 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:32.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:32.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:32.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:32.214 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:32.224 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:32.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:03:32.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:03:32.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:32.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:32.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:03:32.324 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:32.324 -07 000000447 INF: Autofocus start
17-03-18 05:03:32.324 -07 000000447 INF: MeasureProfile start
17-03-18 05:03:32.324 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:32.334 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:32.334 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:32.334 -07 000000447 INF: MeasureProfile done
17-03-18 05:03:32.334 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:03:32.334 -07 000000447 INF: Autofocus finished
17-03-18 05:03:32.534 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:32.534 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:32.534 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135471644241408. ----------
17-03-18 05:03:32.534 -07 000000610 INF: Cycle	132	Tile	14	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:32.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28115, sync = True, waitForSettling = True)
17-03-18 05:03:32.544 -07 000000610 INF: Z Motor: Moving to -0.128702 mm, started at -0.135472 mm, distance = 6.77 um
17-03-18 05:03:32.544 -07 000000610 INF: FPGA: Xmit ZDACW 28115\n [Z Motor]
17-03-18 05:03:32.544 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:03:32.554 -07 000000610 INF: FPGA: 'ZDACW 28115' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:03:32.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:32.554 -07 000000447 INF: FPGA: Recv ZDACR 28115
17-03-18 05:03:32.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:32.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.714 -07 000000479 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:03:32.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:32.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.724 -07 000000606 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:03:32.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.734 -07 000000461 INF: FPGA: Recv ZSGSRD 29324
17-03-18 05:03:32.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.744 -07 000000579 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:03:32.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.754 -07 000000502 INF: FPGA: Recv ZSGSRD 29323
17-03-18 05:03:32.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.764 -07 000000424 INF: FPGA: Recv ZSGSRD 29330
17-03-18 05:03:32.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29320
17-03-18 05:03:32.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.784 -07 000000625 INF: FPGA: Recv ZSGSRD 29321
17-03-18 05:03:32.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:03:32.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:32.804 -07 000000512 INF: FPGA: Recv ZSGSRD 29324
17-03-18 05:03:32.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:32.814 -07 000000480 INF: FPGA: Recv ZPIEZORD 24770
17-03-18 05:03:32.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:32.824 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -10.0 V.
17-03-18 05:03:32.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29325 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29325 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29320 (-127.9 uncal um), Max = 29330 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:32.824 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29325, posNoise = 5, negNoise = 5
17-03-18 05:03:32.824 -07 000000610 INF: Z Motor: After move to -0.128702, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:32.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:03:32.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:32.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:32.824 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:32.824 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:32.824 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:32.824 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:32.824 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:32.824 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:32.824 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:03:32.824 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:32.824 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:32.824 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:32.834 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:32.834 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:03:32.834 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:32.834 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:32.834 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:03:32.844 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:32.844 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:03:32.844 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:32.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28292 150\n [Camera]
17-03-18 05:03:33.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:33.474 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:33.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:33.474 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:33.474 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:33.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:33.474 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:33.484 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:33.484 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:33.484 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:33.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:33.664 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28292 816
17-03-18 05:03:33.814 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:33.854 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:03:33.854 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:03:33.854 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:33.854 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:03:33.854 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:03:33.854 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:33.864 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:03:33.864 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:03:33.864 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:33.874 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:03:34.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:34.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:34.024 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:34.024 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:34.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:03:34.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:34.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:34.024 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:34.024 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:34.024 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:03:34.214 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:03:34.214 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:34.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28292 150' command took 2 ms to send, 1366 ms to get response, and 1374 ms overall
17-03-18 05:03:34.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:34.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128713373068275. ------
17-03-18 05:03:34.224 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13542 mm
17-03-18 05:03:34.224 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:34.224 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:34.224 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29583, sync = True, waitForSettling = False)
17-03-18 05:03:34.224 -07 000000569 INF: Z Motor: Moving to -0.135422 mm, started at -0.128713 mm, distance = -6.71 um
17-03-18 05:03:34.224 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:34.224 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:03:34.224 -07 000000474 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:03:34.234 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:34.234 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:34.234 -07 000000382 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:03:34.244 -07 000000569 INF: FPGA: Xmit ZDACW 29583\n [Z Motor]
17-03-18 05:03:34.244 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:34.244 -07 000000474 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:34.244 -07 000000474 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:34.244 -07 000000474 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:03:34.244 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:03:34.254 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:34.254 -07 000000569 INF: FPGA: 'ZDACW 29583' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:03:34.264 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:34.274 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:34.274 -07 000000480 INF: FPGA: Recv ZDACR 29583
17-03-18 05:03:34.284 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:34.284 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:03:34.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:03:34.414 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:03:34.414 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:34.414 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:03:34.414 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:03:34.414 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:34.414 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:34.424 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:03:34.424 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:03:34.424 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:03:34.454 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:34.454 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:03:34.634 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:03:34.634 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:03:34.684 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:34.684 -07 000000625 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:03:34.694 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:34.694 -07 000000474 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:34.694 -07 000000474 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:03:34.694 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:03:35.614 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.003063,
17-03-18 05:03:35.644 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:35.644 -07 000000480 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:03:35.654 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:35.654 -07 000000474 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:35.684 -07 000000474 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:35.684 -07 000000474 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:35.684 -07 000000474 INF: Y Motor: Moved to 71.5181 after 1452 ms (table move)
17-03-18 05:03:35.684 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135422 mm (DAC = 29583)
17-03-18 05:03:35.684 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.684 -07 000000467 INF: FPGA: Recv ZSGSRD 30367
17-03-18 05:03:35.694 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:35.694 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.694 -07 000000569 INF: FPGA: Recv ZSGSRD 30367
17-03-18 05:03:35.704 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.704 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.704 -07 000000625 INF: FPGA: Recv ZSGSRD 30376
17-03-18 05:03:35.714 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.714 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.714 -07 000000579 INF: FPGA: Recv ZSGSRD 30363
17-03-18 05:03:35.724 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.724 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.724 -07 000000608 INF: FPGA: Recv ZSGSRD 30364
17-03-18 05:03:35.734 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.734 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.734 -07 000000467 INF: FPGA: Recv ZSGSRD 30365
17-03-18 05:03:35.744 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.744 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.744 -07 000000569 INF: FPGA: Recv ZSGSRD 30373
17-03-18 05:03:35.754 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.754 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.754 -07 000000581 INF: FPGA: Recv ZSGSRD 30366
17-03-18 05:03:35.764 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.764 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.764 -07 000000512 INF: FPGA: Recv ZSGSRD 30369
17-03-18 05:03:35.774 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.774 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:35.774 -07 000000608 INF: FPGA: Recv ZSGSRD 30369
17-03-18 05:03:35.784 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.784 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:35.784 -07 000000581 INF: FPGA: Recv ZPIEZORD 26165
17-03-18 05:03:35.794 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:35.794 -07 000000447 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -9.2 V.
17-03-18 05:03:35.794 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30368 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30367 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30363 (-134.6 uncal um), Max = 30376 (-134.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:35.794 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30368, posNoise = 8, negNoise = 5
17-03-18 05:03:35.794 -07 000000447 INF: Z Motor: After move to -0.135422, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:35.794 -07 000000447 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:03:35.794 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:35.844 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 05:03:35.844 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:35.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:35.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:35.844 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:35.844 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:35.844 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:35.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:35.854 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:35.854 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:35.854 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:35.854 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:35.864 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:03:35.864 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:03:35.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:35.914 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:36.214 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:36.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:36.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:36.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:03:36.254 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:36.254 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:36.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:03:36.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:03:36.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:36.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:36.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:03:36.354 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:36.354 -07 000000618 INF: Autofocus start
17-03-18 05:03:36.354 -07 000000618 INF: MeasureProfile start
17-03-18 05:03:36.354 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:36.364 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:36.364 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:36.364 -07 000000618 INF: MeasureProfile done
17-03-18 05:03:36.364 -07 000000618 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:03:36.364 -07 000000618 INF: Autofocus finished
17-03-18 05:03:36.564 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:36.564 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:36.564 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135413826332132. ----------
17-03-18 05:03:36.564 -07 000000610 INF: Cycle	132	Tile	15	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:36.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28124, sync = True, waitForSettling = True)
17-03-18 05:03:36.574 -07 000000610 INF: Z Motor: Moving to -0.128743 mm, started at -0.135414 mm, distance = 6.67 um
17-03-18 05:03:36.574 -07 000000610 INF: FPGA: Xmit ZDACW 28124\n [Z Motor]
17-03-18 05:03:36.574 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:03:36.584 -07 000000610 INF: FPGA: 'ZDACW 28124' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:36.584 -07 000000579 INF: FPGA: Recv ZDACR 28124
17-03-18 05:03:36.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:36.724 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:36.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.744 -07 000000618 INF: FPGA: Recv ZSGSRD 29331
17-03-18 05:03:36.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.754 -07 000000447 INF: FPGA: Recv ZSGSRD 29335
17-03-18 05:03:36.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.764 -07 000000569 INF: FPGA: Recv ZSGSRD 29337
17-03-18 05:03:36.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.774 -07 000000461 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:03:36.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.784 -07 000000424 INF: FPGA: Recv ZSGSRD 29333
17-03-18 05:03:36.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.794 -07 000000382 INF: FPGA: Recv ZSGSRD 29331
17-03-18 05:03:36.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.804 -07 000000467 INF: FPGA: Recv ZSGSRD 29328
17-03-18 05:03:36.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.814 -07 000000455 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:03:36.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.824 -07 000000512 INF: FPGA: Recv ZSGSRD 29329
17-03-18 05:03:36.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:36.834 -07 000000447 INF: FPGA: Recv ZSGSRD 29336
17-03-18 05:03:36.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:36.844 -07 000000502 INF: FPGA: Recv ZPIEZORD 24802
17-03-18 05:03:36.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:36.854 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.9 V.
17-03-18 05:03:36.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29331 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29326 (-127.9 uncal um), Max = 29337 (-128.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:36.854 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 6, negNoise = 5
17-03-18 05:03:36.854 -07 000000610 INF: Z Motor: After move to -0.128743, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:36.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:03:36.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:36.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:36.854 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:36.854 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:36.854 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:36.854 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:36.854 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:36.854 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:36.854 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:36.854 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:36.854 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:36.854 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:36.864 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:03:36.864 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:36.864 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:36.864 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:36.864 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:36.864 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:36.874 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:36.874 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:36.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28301 150\n [Camera]
17-03-18 05:03:37.074 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:37.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:37.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:37.504 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:37.504 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:37.504 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:03:37.504 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:37.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:37.504 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:37.504 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:37.504 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:03:37.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28301 816
17-03-18 05:03:37.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:37.904 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:03:37.904 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:03:37.904 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:37.904 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:03:37.904 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:03:37.904 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:37.904 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:37.904 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:03:37.904 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:37.914 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:03:38.054 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:38.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:38.054 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:38.054 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:38.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:03:38.054 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:38.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:38.054 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:38.054 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:38.054 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:03:38.244 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:38.244 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:38.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28301 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-18 05:03:38.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:38.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128751918341126. ------
17-03-18 05:03:38.254 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:38.254 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13514 mm
17-03-18 05:03:38.254 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:38.254 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:38.254 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:03:38.254 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:03:38.254 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29522, sync = True, waitForSettling = False)
17-03-18 05:03:38.254 -07 000000608 INF: Z Motor: Moving to -0.135143 mm, started at -0.128752 mm, distance = -6.39 um
17-03-18 05:03:38.264 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:03:38.264 -07 000000608 INF: FPGA: Xmit ZDACW 29522\n [Z Motor]
17-03-18 05:03:38.264 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:03:38.274 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:38.274 -07 000000608 INF: FPGA: 'ZDACW 29522' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:03:38.274 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:03:38.284 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:38.284 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:03:38.284 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:38.284 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:38.284 -07 000000424 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:03:38.294 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:38.294 -07 000000579 INF: FPGA: Recv ZDACR 29522
17-03-18 05:03:38.304 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:38.304 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:38.304 -07 000000608 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:03:38.454 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:03:38.454 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:03:38.454 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:38.454 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:03:38.454 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:03:38.484 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:38.484 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:03:38.574 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 517 ms.
17-03-18 05:03:38.574 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 05:03:38.574 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:38.574 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:03:38.584 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 05:03:38.674 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:03:38.674 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 05:03:38.724 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:38.734 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:03:38.734 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:38.734 -07 000000424 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:38.734 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:03:38.734 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 05:03:39.684 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:39.684 -07 000000382 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:03:39.694 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.694 -07 000000424 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:39.724 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:39.724 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:39.724 -07 000000424 INF: Y Motor: Moved to 72.3486 after 1466 ms (table move)
17-03-18 05:03:39.724 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135143 mm (DAC = 29522)
17-03-18 05:03:39.724 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.724 -07 000000447 INF: FPGA: Recv ZSGSRD 30330
17-03-18 05:03:39.734 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:03:39.734 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.734 -07 000000455 INF: FPGA: Recv ZSGSRD 30330
17-03-18 05:03:39.744 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.744 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.744 -07 000000382 INF: FPGA: Recv ZSGSRD 30326
17-03-18 05:03:39.754 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.754 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.754 -07 000000424 INF: FPGA: Recv ZSGSRD 30321
17-03-18 05:03:39.764 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.764 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.764 -07 000000618 INF: FPGA: Recv ZSGSRD 30323
17-03-18 05:03:39.774 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.774 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.774 -07 000000579 INF: FPGA: Recv ZSGSRD 30325
17-03-18 05:03:39.784 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.784 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.784 -07 000000474 INF: FPGA: Recv ZSGSRD 30322
17-03-18 05:03:39.794 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.794 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30332
17-03-18 05:03:39.804 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.804 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.804 -07 000000382 INF: FPGA: Recv ZSGSRD 30326
17-03-18 05:03:39.814 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.814 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:39.814 -07 000000455 INF: FPGA: Recv ZSGSRD 30323
17-03-18 05:03:39.824 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.824 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:39.824 -07 000000606 INF: FPGA: Recv ZPIEZORD 26058
17-03-18 05:03:39.834 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:39.834 -07 000000480 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.505 V. Piezo Error = -9.4 V.
17-03-18 05:03:39.834 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30326 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30326 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30321 (-134.3 uncal um), Max = 30332 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:39.834 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30326, posNoise = 6, negNoise = 5
17-03-18 05:03:39.834 -07 000000480 INF: Z Motor: After move to -0.135143, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:39.834 -07 000000480 INF: Z Motor: Settle wait time = 1470 ms, measure time = 104 ms (allowed 150 ms), total time = 1574 ms
17-03-18 05:03:39.834 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:39.884 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:03:39.884 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:39.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:39.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:39.884 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:39.884 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:39.884 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:39.884 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:39.894 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:39.894 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:39.894 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:39.894 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:39.904 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:03:39.904 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:03:39.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:39.954 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:40.254 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:40.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:40.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:40.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:40.294 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:40.294 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:40.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:03:40.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:03:40.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:40.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:40.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:03:40.394 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:40.394 -07 000000579 INF: Autofocus start
17-03-18 05:03:40.394 -07 000000579 INF: MeasureProfile start
17-03-18 05:03:40.394 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:40.404 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:40.404 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:40.404 -07 000000579 INF: MeasureProfile done
17-03-18 05:03:40.404 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:03:40.404 -07 000000579 INF: Autofocus finished
17-03-18 05:03:40.604 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:40.604 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:03:40.614 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.135144009422178. ----------
17-03-18 05:03:40.614 -07 000000610 INF: Cycle	132	Tile	16	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:40.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28017, sync = True, waitForSettling = True)
17-03-18 05:03:40.614 -07 000000610 INF: Z Motor: Moving to -0.128254 mm, started at -0.135144 mm, distance = 6.89 um
17-03-18 05:03:40.644 -07 000000610 INF: FPGA: Xmit ZDACW 28017\n [Z Motor]
17-03-18 05:03:40.644 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:03:40.654 -07 000000610 INF: FPGA: 'ZDACW 28017' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:03:40.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:40.654 -07 000000569 INF: FPGA: Recv ZDACR 28017
17-03-18 05:03:40.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:40.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.814 -07 000000501 INF: FPGA: Recv ZSGSRD 29246
17-03-18 05:03:40.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:40.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.824 -07 000000502 INF: FPGA: Recv ZSGSRD 29250
17-03-18 05:03:40.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.834 -07 000000618 INF: FPGA: Recv ZSGSRD 29259
17-03-18 05:03:40.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29251
17-03-18 05:03:40.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.854 -07 000000579 INF: FPGA: Recv ZSGSRD 29253
17-03-18 05:03:40.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.864 -07 000000608 INF: FPGA: Recv ZSGSRD 29258
17-03-18 05:03:40.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.874 -07 000000502 INF: FPGA: Recv ZSGSRD 29256
17-03-18 05:03:40.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.884 -07 000000569 INF: FPGA: Recv ZSGSRD 29256
17-03-18 05:03:40.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.894 -07 000000479 INF: FPGA: Recv ZSGSRD 29251
17-03-18 05:03:40.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:40.904 -07 000000447 INF: FPGA: Recv ZSGSRD 29254
17-03-18 05:03:40.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:40.914 -07 000000501 INF: FPGA: Recv ZPIEZORD 24703
17-03-18 05:03:40.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:40.924 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.275 V. Piezo Error = -10.0 V.
17-03-18 05:03:40.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29253 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29254 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29246 (-127.4 uncal um), Max = 29259 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:03:40.924 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29253, posNoise = 6, negNoise = 7
17-03-18 05:03:40.924 -07 000000610 INF: Z Motor: After move to -0.128254, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:40.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-18 05:03:40.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:40.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:40.924 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:40.924 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:40.924 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:40.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:40.924 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:40.924 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:40.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:40.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:40.924 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:03:40.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:40.934 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:40.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:40.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:40.934 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:40.944 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:40.944 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:40.944 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:40.944 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:03:40.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28194 150\n [Camera]
17-03-18 05:03:40.984 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.007176,
17-03-18 05:03:41.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:41.574 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:41.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:41.574 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:41.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:41.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:41.584 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:41.584 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:41.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:41.584 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:41.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:41.724 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:41.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:41.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28194 816
17-03-18 05:03:41.914 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:41.954 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 05:03:41.954 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 05:03:41.954 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:41.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:03:41.954 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:03:41.954 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:41.954 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:41.964 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:41.964 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:03:41.964 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:03:42.124 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:42.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:42.124 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:42.124 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:42.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:42.134 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:42.134 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:42.134 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:03:42.134 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:42.144 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:03:42.314 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:42.314 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:42.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28194 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-18 05:03:42.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:42.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.128250829794068. ------
17-03-18 05:03:42.444 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:42.444 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13483 mm
17-03-18 05:03:42.444 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:42.444 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:03:42.444 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29453, sync = True, waitForSettling = False)
17-03-18 05:03:42.444 -07 000000512 INF: Z Motor: Moving to -0.134827 mm, started at -0.128251 mm, distance = -6.58 um
17-03-18 05:03:42.444 -07 000000467 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:03:42.454 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:42.454 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:42.454 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:03:42.454 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:03:42.464 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:42.464 -07 000000467 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:42.464 -07 000000512 INF: FPGA: Xmit ZDACW 29453\n [Z Motor]
17-03-18 05:03:42.464 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:03:42.464 -07 000000467 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:42.464 -07 000000467 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:03:42.474 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:42.474 -07 000000512 INF: FPGA: 'ZDACW 29453' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:03:42.484 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:42.494 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:42.494 -07 000000480 INF: FPGA: Recv ZDACR 29453
17-03-18 05:03:42.504 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:42.504 -07 000000512 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:03:42.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:03:42.524 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:03:42.524 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:42.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:03:42.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:03:42.524 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:42.524 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:42.524 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:03:42.524 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:42.534 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:03:42.674 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:42.674 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:03:42.854 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:03:42.854 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 05:03:42.904 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:42.914 -07 000000625 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:03:42.914 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:03:42.914 -07 000000467 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:42.914 -07 000000467 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:03:42.914 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-18 05:03:43.864 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:43.864 -07 000000501 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:03:43.874 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.874 -07 000000467 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:43.904 -07 000000467 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:43.904 -07 000000467 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:43.904 -07 000000467 INF: Y Motor: Moved to 73.1753 after 1452 ms (table move)
17-03-18 05:03:43.904 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134827 mm (DAC = 29453)
17-03-18 05:03:43.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.904 -07 000000447 INF: FPGA: Recv ZSGSRD 30281
17-03-18 05:03:43.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:43.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30281
17-03-18 05:03:43.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.924 -07 000000424 INF: FPGA: Recv ZSGSRD 30276
17-03-18 05:03:43.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.934 -07 000000479 INF: FPGA: Recv ZSGSRD 30280
17-03-18 05:03:43.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.944 -07 000000467 INF: FPGA: Recv ZSGSRD 30275
17-03-18 05:03:43.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.954 -07 000000626 INF: FPGA: Recv ZSGSRD 30278
17-03-18 05:03:43.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.964 -07 000000512 INF: FPGA: Recv ZSGSRD 30277
17-03-18 05:03:43.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.974 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.974 -07 000000424 INF: FPGA: Recv ZSGSRD 30270
17-03-18 05:03:43.984 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.984 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.984 -07 000000479 INF: FPGA: Recv ZSGSRD 30277
17-03-18 05:03:43.994 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:43.994 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:43.994 -07 000000625 INF: FPGA: Recv ZSGSRD 30282
17-03-18 05:03:44.004 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:44.004 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:44.004 -07 000000569 INF: FPGA: Recv ZPIEZORD 26038
17-03-18 05:03:44.014 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:44.014 -07 000000606 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -9.3 V.
17-03-18 05:03:44.014 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30278 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30278 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30270 (-134.0 uncal um), Max = 30282 (-134.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:03:44.014 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30278, posNoise = 4, negNoise = 8
17-03-18 05:03:44.014 -07 000000606 INF: Z Motor: After move to -0.134827, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:44.014 -07 000000606 INF: Z Motor: Settle wait time = 1455 ms, measure time = 106 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:03:44.014 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:44.064 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:03:44.064 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:44.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:44.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:44.064 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:44.064 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:44.064 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:44.064 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:44.064 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:44.064 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:44.074 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:44.074 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:44.084 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:03:44.084 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:03:44.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:44.134 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:44.434 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:44.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:44.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:44.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:44.464 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:44.474 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:44.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:03:44.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:03:44.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:44.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:44.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:03:44.574 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:44.574 -07 000000579 INF: Autofocus start
17-03-18 05:03:44.574 -07 000000579 INF: MeasureProfile start
17-03-18 05:03:44.574 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:44.584 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:03:44.584 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:44.584 -07 000000579 INF: MeasureProfile done
17-03-18 05:03:44.584 -07 000000579 INF: X=-14  Z correction [um]=-0.07155244
17-03-18 05:03:44.584 -07 000000579 INF: Autofocus finished
17-03-18 05:03:44.784 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:44.784 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:44.784 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134835647239373. ----------
17-03-18 05:03:44.794 -07 000000610 INF: Cycle	132	Tile	17	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:44.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27950, sync = True, waitForSettling = True)
17-03-18 05:03:44.794 -07 000000610 INF: Z Motor: Moving to -0.127947 mm, started at -0.134836 mm, distance = 6.89 um
17-03-18 05:03:44.794 -07 000000610 INF: FPGA: Xmit ZDACW 27950\n [Z Motor]
17-03-18 05:03:44.794 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:03:44.804 -07 000000610 INF: FPGA: 'ZDACW 27950' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:44.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:44.804 -07 000000626 INF: FPGA: Recv ZDACR 27950
17-03-18 05:03:44.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:44.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:44.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:44.964 -07 000000479 INF: FPGA: Recv ZSGSRD 29206
17-03-18 05:03:44.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:44.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:44.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29204
17-03-18 05:03:44.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:44.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:44.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29211
17-03-18 05:03:44.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:44.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:44.994 -07 000000474 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:03:45.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:45.004 -07 000000501 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:03:45.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:45.014 -07 000000479 INF: FPGA: Recv ZSGSRD 29205
17-03-18 05:03:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:45.024 -07 000000382 INF: FPGA: Recv ZSGSRD 29201
17-03-18 05:03:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:45.034 -07 000000467 INF: FPGA: Recv ZSGSRD 29211
17-03-18 05:03:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:45.044 -07 000000424 INF: FPGA: Recv ZSGSRD 29206
17-03-18 05:03:45.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:45.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29207
17-03-18 05:03:45.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:45.064 -07 000000512 INF: FPGA: Recv ZPIEZORD 24602
17-03-18 05:03:45.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:45.074 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.265 V. Piezo Error = -10.1 V.
17-03-18 05:03:45.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29207 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29206 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29201 (-127.1 uncal um), Max = 29211 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:03:45.074 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29207, posNoise = 4, negNoise = 6
17-03-18 05:03:45.074 -07 000000610 INF: Z Motor: After move to -0.127947, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:45.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:03:45.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:45.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:45.074 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:45.074 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:45.074 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:45.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:45.074 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:45.074 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:45.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:03:45.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:45.074 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:45.074 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:45.084 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:03:45.084 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:45.084 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:45.084 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:45.094 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:45.094 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:45.094 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:45.094 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:03:45.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28127 150\n [Camera]
17-03-18 05:03:45.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:45.724 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:45.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:45.724 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:45.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:45.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:45.724 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:45.724 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:45.724 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:45.734 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:45.734 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:45.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28127 819
17-03-18 05:03:46.064 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:46.104 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:03:46.104 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:03:46.104 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:46.114 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:03:46.114 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:03:46.114 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:46.114 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:46.114 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:03:46.114 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:46.124 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:03:46.274 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:46.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:46.274 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:46.274 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:46.274 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:03:46.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:46.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:46.274 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:46.274 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:46.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:03:46.344 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 4.014009,
17-03-18 05:03:46.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:46.464 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:46.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28127 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-18 05:03:46.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:46.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127955316035547. ------
17-03-18 05:03:46.474 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:46.474 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13372 mm
17-03-18 05:03:46.474 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:46.474 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:46.474 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29212, sync = True, waitForSettling = False)
17-03-18 05:03:46.474 -07 000000474 INF: Z Motor: Moving to -0.133724 mm, started at -0.127955 mm, distance = -5.77 um
17-03-18 05:03:46.474 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:03:46.474 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:03:46.484 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:03:46.484 -07 000000474 INF: FPGA: Xmit ZDACW 29212\n [Z Motor]
17-03-18 05:03:46.484 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:03:46.494 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:46.494 -07 000000474 INF: FPGA: 'ZDACW 29212' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:03:46.494 -07 000000579 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:03:46.504 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:46.504 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:03:46.504 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:46.504 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:46.504 -07 000000618 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:03:46.514 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:46.514 -07 000000461 INF: FPGA: Recv ZDACR 29212
17-03-18 05:03:46.524 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:46.524 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:03:46.524 -07 000000474 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:03:46.654 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:03:46.654 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:03:46.654 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:46.664 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:46.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:03:46.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:03:46.664 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:46.664 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:03:46.664 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:03:46.664 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:03:46.704 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:46.704 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:03:46.724 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:46.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:46.894 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:03:46.894 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:03:46.934 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:46.944 -07 000000501 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:03:46.944 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:03:46.944 -07 000000618 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:46.944 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:03:46.944 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.847 mm, average velocity = 2.156 mm/sec
17-03-18 05:03:47.894 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:47.894 -07 000000501 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:03:47.904 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:47.904 -07 000000618 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:47.924 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:47.924 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:03:47.924 -07 000000618 INF: Y Motor: Moved to 74.0078 after 1445 ms (table move)
17-03-18 05:03:47.924 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133724 mm (DAC = 29212)
17-03-18 05:03:47.924 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.934 -07 000000461 INF: FPGA: Recv ZSGSRD 30108
17-03-18 05:03:47.934 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:03:47.934 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.934 -07 000000579 INF: FPGA: Recv ZSGSRD 30107
17-03-18 05:03:47.944 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:03:47.944 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.944 -07 000000625 INF: FPGA: Recv ZSGSRD 30112
17-03-18 05:03:47.954 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:47.954 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30103
17-03-18 05:03:47.964 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:47.964 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.964 -07 000000502 INF: FPGA: Recv ZSGSRD 30105
17-03-18 05:03:47.974 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:47.974 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.974 -07 000000424 INF: FPGA: Recv ZSGSRD 30109
17-03-18 05:03:47.984 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:47.984 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.984 -07 000000569 INF: FPGA: Recv ZSGSRD 30103
17-03-18 05:03:47.994 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:47.994 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:47.994 -07 000000474 INF: FPGA: Recv ZSGSRD 30102
17-03-18 05:03:48.004 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:48.004 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:48.004 -07 000000467 INF: FPGA: Recv ZSGSRD 30097
17-03-18 05:03:48.014 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:48.014 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:48.014 -07 000000579 INF: FPGA: Recv ZSGSRD 30111
17-03-18 05:03:48.024 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:48.024 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:48.024 -07 000000625 INF: FPGA: Recv ZPIEZORD 25843
17-03-18 05:03:48.034 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:48.034 -07 000000480 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.4 V.
17-03-18 05:03:48.034 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30106 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30106 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30097 (-132.9 uncal um), Max = 30112 (-133.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:03:48.034 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30106, posNoise = 6, negNoise = 9
17-03-18 05:03:48.034 -07 000000480 INF: Z Motor: After move to -0.133724, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:48.034 -07 000000480 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:03:48.034 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:48.084 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 05:03:48.084 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:48.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:48.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:48.084 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:48.084 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:48.084 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:48.084 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:48.084 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:48.084 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:48.094 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:48.094 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:48.104 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:03:48.104 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:03:48.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:48.154 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:03:48.454 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:03:48.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:03:48.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:48.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) start.
17-03-18 05:03:48.494 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:03:48.494 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:48.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:03:48.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594202312, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:03:48.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:48.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:48.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:03:48.594 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:48.594 -07 000000618 INF: Autofocus start
17-03-18 05:03:48.594 -07 000000618 INF: MeasureProfile start
17-03-18 05:03:48.594 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:48.604 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:48.604 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:48.604 -07 000000618 INF: MeasureProfile done
17-03-18 05:03:48.604 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:03:48.604 -07 000000618 INF: Autofocus finished
17-03-18 05:03:48.804 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:48.804 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:48.804 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.13373068275099. ----------
17-03-18 05:03:48.814 -07 000000610 INF: Cycle	132	Tile	18	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:48.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27736, sync = True, waitForSettling = True)
17-03-18 05:03:48.814 -07 000000610 INF: Z Motor: Moving to -0.126967 mm, started at -0.133731 mm, distance = 6.76 um
17-03-18 05:03:48.814 -07 000000610 INF: FPGA: Xmit ZDACW 27736\n [Z Motor]
17-03-18 05:03:48.814 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:03:48.824 -07 000000610 INF: FPGA: 'ZDACW 27736' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:03:48.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:48.824 -07 000000606 INF: FPGA: Recv ZDACR 27736
17-03-18 05:03:48.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:48.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:48.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:48.984 -07 000000474 INF: FPGA: Recv ZSGSRD 29053
17-03-18 05:03:48.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:48.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:48.994 -07 000000618 INF: FPGA: Recv ZSGSRD 29057
17-03-18 05:03:49.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.004 -07 000000455 INF: FPGA: Recv ZSGSRD 29052
17-03-18 05:03:49.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.014 -07 000000480 INF: FPGA: Recv ZSGSRD 29053
17-03-18 05:03:49.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.024 -07 000000467 INF: FPGA: Recv ZSGSRD 29054
17-03-18 05:03:49.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.034 -07 000000479 INF: FPGA: Recv ZSGSRD 29055
17-03-18 05:03:49.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.044 -07 000000502 INF: FPGA: Recv ZSGSRD 29060
17-03-18 05:03:49.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.054 -07 000000626 INF: FPGA: Recv ZSGSRD 29056
17-03-18 05:03:49.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29050
17-03-18 05:03:49.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:49.074 -07 000000626 INF: FPGA: Recv ZSGSRD 29055
17-03-18 05:03:49.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:49.084 -07 000000579 INF: FPGA: Recv ZPIEZORD 24454
17-03-18 05:03:49.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:49.094 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.232 V. Piezo Error = -10.1 V.
17-03-18 05:03:49.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29054 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29054 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29050 (-126.2 uncal um), Max = 29060 (-126.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:03:49.094 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29054, posNoise = 6, negNoise = 4
17-03-18 05:03:49.094 -07 000000610 INF: Z Motor: After move to -0.126967, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:49.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:03:49.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:49.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:49.094 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:49.094 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:49.094 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:49.094 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:49.094 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:49.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:49.094 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:03:49.094 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:49.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:49.094 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:49.104 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:49.104 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:49.104 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:03:49.104 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:49.114 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:03:49.114 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:03:49.114 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:49.114 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:03:49.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 27913 150\n [Camera]
17-03-18 05:03:49.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:49.744 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:49.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:49.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:49.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:49.754 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:49.754 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:49.754 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:03:49.754 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:49.754 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:49.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:03:49.934 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27913 816
17-03-18 05:03:50.084 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:50.124 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:03:50.124 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:03:50.124 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:50.134 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:03:50.134 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:03:50.134 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:50.134 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:50.134 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:50.134 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:03:50.144 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:03:50.294 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:50.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:50.294 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:50.294 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:50.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:03:50.294 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:50.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:50.294 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:50.294 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:50.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:03:50.484 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-18 05:03:50.484 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:50.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 27913 150' command took 2 ms to send, 1367 ms to get response, and 1372 ms overall
17-03-18 05:03:50.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:03:50.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126972411577858. ------
17-03-18 05:03:50.614 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13335 mm
17-03-18 05:03:50.614 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:03:50.614 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:50.614 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29130, sync = True, waitForSettling = False)
17-03-18 05:03:50.614 -07 000000447 INF: Z Motor: Moving to -0.133349 mm, started at -0.126972 mm, distance = -6.38 um
17-03-18 05:03:50.614 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:03:50.614 -07 000000625 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 05:03:50.614 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:50.624 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:50.624 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:50.624 -07 000000424 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:03:50.634 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:03:50.634 -07 000000625 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:50.634 -07 000000625 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:03:50.634 -07 000000625 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:03:50.634 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:03:50.644 -07 000000447 INF: FPGA: Xmit ZDACW 29130\n [Z Motor]
17-03-18 05:03:50.644 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:03:50.654 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:03:50.654 -07 000000447 INF: FPGA: 'ZDACW 29130' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:03:50.664 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:50.664 -07 000000501 INF: FPGA: Recv ZDACR 29130
17-03-18 05:03:50.674 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:03:50.674 -07 000000447 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:03:50.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:03:50.694 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:03:50.694 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:50.694 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:03:50.694 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:03:50.694 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:50.694 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:50.694 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:03:50.694 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:03:50.704 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:03:50.834 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:03:50.834 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 05:03:51.024 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:03:51.024 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:03:51.054 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:51.064 -07 000000474 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:03:51.074 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:51.074 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:51.074 -07 000000625 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:03:51.074 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 05:03:51.704 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.997626,
17-03-18 05:03:51.724 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:51.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 131. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:52.024 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:52.024 -07 000000569 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:03:52.034 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.034 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:52.054 -07 000000625 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:52.054 -07 000000625 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:52.054 -07 000000625 INF: Y Motor: Moved to 74.8311 after 1436 ms (table move)
17-03-18 05:03:52.054 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133349 mm (DAC = 29130)
17-03-18 05:03:52.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.064 -07 000000382 INF: FPGA: Recv ZSGSRD 30056
17-03-18 05:03:52.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:03:52.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.064 -07 000000502 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:03:52.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:03:52.074 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.074 -07 000000382 INF: FPGA: Recv ZSGSRD 30043
17-03-18 05:03:52.084 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.084 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.084 -07 000000502 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:03:52.094 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.094 -07 000000480 INF: FPGA: Recv ZSGSRD 30050
17-03-18 05:03:52.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.104 -07 000000479 INF: FPGA: Recv ZSGSRD 30056
17-03-18 05:03:52.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.114 -07 000000447 INF: FPGA: Recv ZSGSRD 30053
17-03-18 05:03:52.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.124 -07 000000467 INF: FPGA: Recv ZSGSRD 30045
17-03-18 05:03:52.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.134 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.134 -07 000000581 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:03:52.144 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:52.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30042
17-03-18 05:03:52.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.154 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:52.154 -07 000000424 INF: FPGA: Recv ZPIEZORD 25818
17-03-18 05:03:52.164 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.164 -07 000000455 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.445 V. Piezo Error = -9.3 V.
17-03-18 05:03:52.164 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30049 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30047 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30056 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:03:52.164 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30049, posNoise = 7, negNoise = 7
17-03-18 05:03:52.164 -07 000000455 INF: Z Motor: After move to -0.133349, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:52.164 -07 000000455 INF: Z Motor: Settle wait time = 1439 ms, measure time = 103 ms (allowed 150 ms), total time = 1542 ms
17-03-18 05:03:52.164 -07 000000455 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:03:52.214 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 05:03:52.214 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:03:52.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:52.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:52.214 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:52.214 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:03:52.214 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:52.214 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:52.224 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:03:52.224 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:52.224 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:03:52.224 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:03:52.234 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:03:52.234 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:03:52.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:03:52.274 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:03:52.574 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:03:52.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:03:52.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:03:52.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) start.
17-03-18 05:03:52.614 -07 000000579 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:03:52.624 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:03:52.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 05:03:52.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575120928, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:03:52.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:52.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:03:52.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:03:52.724 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:03:52.724 -07 000000480 INF: Autofocus start
17-03-18 05:03:52.724 -07 000000480 INF: MeasureProfile start
17-03-18 05:03:52.724 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:03:52.734 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:03:52.734 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:03:52.734 -07 000000480 INF: MeasureProfile done
17-03-18 05:03:52.734 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:03:52.734 -07 000000480 INF: Autofocus finished
17-03-18 05:03:52.934 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:03:52.934 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:03:52.934 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.13336450265891. ----------
17-03-18 05:03:52.934 -07 000000610 INF: Cycle	132	Tile	19	Exposure Settings		A	431	G	207	T	207	C	431
17-03-18 05:03:52.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27637, sync = True, waitForSettling = True)
17-03-18 05:03:52.944 -07 000000610 INF: Z Motor: Moving to -0.126514 mm, started at -0.133365 mm, distance = 6.85 um
17-03-18 05:03:52.944 -07 000000610 INF: FPGA: Xmit ZDACW 27637\n [Z Motor]
17-03-18 05:03:52.944 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:03:52.954 -07 000000610 INF: FPGA: 'ZDACW 27637' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:03:52.954 -07 000000512 INF: FPGA: Recv ZDACR 27637
17-03-18 05:03:52.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:52.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:03:53.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.114 -07 000000480 INF: FPGA: Recv ZSGSRD 28981
17-03-18 05:03:53.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:53.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.124 -07 000000501 INF: FPGA: Recv ZSGSRD 28991
17-03-18 05:03:53.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.134 -07 000000424 INF: FPGA: Recv ZSGSRD 28982
17-03-18 05:03:53.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.144 -07 000000569 INF: FPGA: Recv ZSGSRD 28987
17-03-18 05:03:53.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.154 -07 000000608 INF: FPGA: Recv ZSGSRD 28984
17-03-18 05:03:53.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.164 -07 000000382 INF: FPGA: Recv ZSGSRD 28984
17-03-18 05:03:53.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.174 -07 000000467 INF: FPGA: Recv ZSGSRD 28987
17-03-18 05:03:53.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.184 -07 000000479 INF: FPGA: Recv ZSGSRD 28980
17-03-18 05:03:53.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.194 -07 000000447 INF: FPGA: Recv ZSGSRD 28990
17-03-18 05:03:53.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:03:53.204 -07 000000502 INF: FPGA: Recv ZSGSRD 28983
17-03-18 05:03:53.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:03:53.214 -07 000000474 INF: FPGA: Recv ZPIEZORD 24417
17-03-18 05:03:53.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:53.224 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -10.0 V.
17-03-18 05:03:53.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28985 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28984 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28980 (-125.7 uncal um), Max = 28991 (-125.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:03:53.224 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28985, posNoise = 6, negNoise = 5
17-03-18 05:03:53.224 -07 000000610 INF: Z Motor: After move to -0.126514, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:03:53.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:03:53.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:03:53.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:03:53.224 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:03:53.224 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:03:53.224 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:03:53.224 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:03:53.224 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:03:53.224 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:03:53.224 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:03:53.224 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:03:53.224 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:03:53.224 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:03:53.234 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:03:53.234 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:03:53.234 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:03:53.234 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:03:53.234 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:03:53.234 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:03:53.244 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:03:53.244 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:03:53.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 27814 150\n [Camera]
17-03-18 05:03:53.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:03:53.874 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-18 05:03:53.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-18 05:03:53.874 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:53.874 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-18 05:03:53.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-18 05:03:53.874 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:53.874 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:53.874 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:03:53.884 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:53.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:03:54.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27814 816
17-03-18 05:03:54.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-18 05:03:54.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:03:54.274 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:03:54.274 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:54.274 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:54.274 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:03:54.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:03:54.274 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:03:54.274 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:54.284 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:54.284 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:03:54.424 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-18 05:03:54.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-18 05:03:54.424 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:03:54.424 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-18 05:03:54.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-18 05:03:54.424 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:03:54.434 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:03:54.434 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:03:54.434 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:03:54.434 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:03:54.614 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-18 05:03:54.614 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:03:54.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 27814 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-18 05:03:54.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:03:54.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:03:54.824 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:54.824 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:03:54.824 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:03:54.824 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:03:54.834 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:03:54.834 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:03:54.834 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:03:54.834 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:03:54.834 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:03:54.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:03:54.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:03:54.914 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 05:03:54.924 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 05:03:54.924 -07 000000610 INF: Imaging Cycle 132: ScanTilesCommand Cycle 132 time end. Duration was 164406 ms.
17-03-18 05:03:54.924 -07 000000610 INF: =================== Cycle #132 ===================
17-03-18 05:03:54.924 -07 000000610 INF: ===================  ===================
17-03-18 05:03:54.924 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:03:54.934 -07 000000569 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 05:03:54.944 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:03:54.944 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 05:03:54.944 -07 000000461 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 132, FrontChillerTemperature: 3.997626, FrontChillerHeatSinkTemperature: 0.338359, AmbientTemperature: 18.65776, FlowCellCompartmentTemperature: 22.00563, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.42808, GreenLEDSensorTemperature: 27.3978, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 05:03:55.034 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.