17-03-18 05:03:55.064 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:03:55.064 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:03:55.064 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 05:03:55.064 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:55.064 -07 000000581 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:03:55.074 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:03:55.074 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:55.074 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:03:55.074 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:03:55.074 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:03:55.194 -07 000000618 INF: FPGA: Recv YMVTO 154378 872
17-03-18 05:03:55.194 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 116 ms overall
17-03-18 05:03:55.194 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:03:55.194 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:03:55.194 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 05:03:56.724 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:03:56.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1820, R2=1889, Total=3709. Warn if over 250 bubbles per interval.
17-03-18 05:03:57.064 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.012614,
17-03-18 05:03:58.194 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:03:58.194 -07 000000579 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:03:58.204 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:03:58.204 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:03:58.224 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:03:58.224 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:03:58.224 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3166 ms
17-03-18 05:03:58.234 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 60° ===================
17-03-18 05:03:58.234 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:03:58.234 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:03:58.234 -07 000000579 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:03:58.244 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:03:58.244 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:03:58.244 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 05:03:58.254 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:03:58.254 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 60° ===================
17-03-18 05:03:58.254 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:03:58.254 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:03:58.254 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:03:58.284 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:03:58.284 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:03:58.284 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:03:58.584 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:03:58.604 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:03:58.604 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:03:58.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:03:58.674 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:03:58.674 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:03:58.774 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:03:58.774 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:03:58.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:03:58.804 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:03:58.804 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:03:58.804 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:03:58.934 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:03:58.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:01.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 05:04:01.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1822, R2=1891, Total=3713. Warn if over 250 bubbles per interval.
17-03-18 05:04:02.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:02.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:02.424 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.969015,
17-03-18 05:04:02.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:02.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:03.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:03.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:03.034 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:04:03.034 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:03.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:03.204 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:04:03.204 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:04:03.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:03.364 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:04:03.364 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:04:03.364 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:04:03.494 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:04:03.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:03.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:03.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:03.984 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:04:03.984 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:05.204 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:04:05.204 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:04:05.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:05.224 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:04:05.224 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:04:05.224 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:04:05.354 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:04:05.374 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:04:05.374 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:04:05.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:05.444 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:04:05.444 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:04:05.544 -07 000000610 INF: =================== Cycle #133, Pumping Reagent CMS (4) ===================
17-03-18 05:04:05.544 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:04:05.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:05.574 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:04:05.574 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:04:05.574 -07 000000610 INF: =================== Cycle #133, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:04:05.704 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:04:05.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:06.724 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:04:06.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1823, R2=1892, Total=3715. Warn if over 250 bubbles per interval.
17-03-18 05:04:07.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:07.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:07.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:07.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:07.664 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:04:07.664 -07 000000610 INF: =================== Cycle #133, Pumping Reagent CMS (4) ===================
17-03-18 05:04:07.784 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.98264,
17-03-18 05:04:07.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:07.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:04:07.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:04:07.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:07.984 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:04:07.984 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:04:07.984 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:04:08.114 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:04:08.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:08.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:08.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:08.604 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:04:08.604 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:09.824 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:04:09.824 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:04:09.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:09.844 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:04:09.844 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:04:09.844 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:04:09.994 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:04:10.014 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:04:10.014 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:04:10.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:10.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:04:10.084 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:04:10.184 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:10.184 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:04:10.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:10.214 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:04:10.214 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:04:10.214 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:04:10.344 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:04:10.384 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:11.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:11.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:11.284 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:04:11.284 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:11.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:11.444 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:04:11.444 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:04:11.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:11.604 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:04:11.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:04:11.604 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:04:11.724 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:11.734 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:04:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1823, R2=1892, Total=3715. Warn if over 250 bubbles per interval.
17-03-18 05:04:11.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:12.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:12.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:12.224 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:04:12.224 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:12.224 -07 000000455 INF: WaitCommand(10000) start
17-03-18 05:04:12.224 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:04:12.224 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:04:13.144 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.999021,
17-03-18 05:04:13.444 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:04:13.444 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-18 05:04:13.474 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:04:13.474 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:04:13.604 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:04:13.644 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:15.174 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:15.204 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:15.624 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:15.654 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:15.654 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:04:15.654 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:04:15.654 -07 000000480 INF: ===================  ===================
17-03-18 05:04:16.724 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1823, R2=1892, Total=3715. Warn if over 250 bubbles per interval.
17-03-18 05:04:18.504 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.003063,
17-03-18 05:04:21.724 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1823, R2=1892, Total=3715. Warn if over 250 bubbles per interval.
17-03-18 05:04:22.234 -07 000000455 INF: WaitCommand(10000) end
17-03-18 05:04:22.234 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:22.234 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:04:22.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:22.264 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:04:22.264 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:04:22.264 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:04:22.394 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:04:22.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:23.864 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.018051,
17-03-18 05:04:26.724 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1823, R2=1892, Total=3715. Warn if over 250 bubbles per interval.
17-03-18 05:04:28.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:28.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:29.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:29.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:29.224 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.011254,
17-03-18 05:04:29.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:29.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:29.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:29.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:30.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:30.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:30.394 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:04:30.394 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:30.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:30.554 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:04:30.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:04:30.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:30.714 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:04:30.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:04:30.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:04:30.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:04:30.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:31.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:31.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:31.334 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:04:31.334 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:31.734 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 05:04:31.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1825, R2=1895, Total=3720. Warn if over 250 bubbles per interval.
17-03-18 05:04:32.554 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:04:32.554 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:04:32.554 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:32.574 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:04:32.574 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:04:32.574 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:04:32.784 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:04:32.804 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:04:32.804 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:04:32.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:32.874 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:04:32.874 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:04:32.974 -07 000000610 INF: =================== Cycle #133, Pumping Reagent IMT (1) ===================
17-03-18 05:04:32.974 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:04:32.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:33.004 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:04:33.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:04:33.004 -07 000000610 INF: =================== Cycle #133, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:04:33.134 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:04:33.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:34.584 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.007176,
17-03-18 05:04:34.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:34.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:35.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:35.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:35.094 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:04:35.094 -07 000000610 INF: =================== Cycle #133, Pumping Reagent IMT (1) ===================
17-03-18 05:04:35.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:35.254 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:04:35.254 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:04:35.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:35.414 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:04:35.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:04:35.414 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:04:35.544 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:04:35.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:36.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:36.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:36.034 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:04:36.034 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:36.734 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1825, R2=1895, Total=3720. Warn if over 250 bubbles per interval.
17-03-18 05:04:37.254 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:04:37.254 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:04:37.254 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:37.274 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:04:37.274 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:04:37.274 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:04:37.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:04:37.524 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:04:37.524 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:04:37.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:04:37.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:04:37.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:04:37.694 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:37.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:04:37.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:37.724 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:04:37.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:04:37.724 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:04:37.854 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:04:37.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:04:38.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:38.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:38.794 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:04:38.794 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:04:38.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:38.954 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:04:38.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:04:39.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:04:39.114 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:04:39.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:04:39.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:04:39.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:04:39.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:39.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:04:39.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:04:39.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:04:39.734 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:39.734 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 65° ===================
17-03-18 05:04:39.734 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:04:39.734 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:04:39.734 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:04:39.744 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:04:39.744 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:04:39.744 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-18 05:04:39.754 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:04:39.754 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 65° ===================
17-03-18 05:04:39.754 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:04:39.754 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:04:39.944 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.004458,
17-03-18 05:04:41.734 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:04:41.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1895, Total=3721. Warn if over 250 bubbles per interval.
17-03-18 05:04:45.304 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.011254,
17-03-18 05:04:46.734 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:46.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1895, Total=3721. Warn if over 250 bubbles per interval.
17-03-18 05:04:50.664 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.993549,
17-03-18 05:04:51.734 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:04:51.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:04:56.024 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.981281,
17-03-18 05:04:56.734 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:04:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:01.384 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.983999,
17-03-18 05:05:01.734 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:01.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:06.734 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:06.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:06.744 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.001704,
17-03-18 05:05:09.764 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:05:09.764 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:05:09.764 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:05:09.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:09.894 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:05:09.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:05:09.894 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:05:10.024 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:05:10.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:10.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:10.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:10.634 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:05:10.634 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:05:10.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:10.794 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:05:10.794 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:05:10.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:10.954 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:05:10.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:05:10.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:05:11.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:05:11.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:11.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:11.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:11.574 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:05:11.574 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:05:11.574 -07 000000608 INF: WaitCommand(30000) start
17-03-18 05:05:11.574 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:05:11.574 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:05:11.734 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:12.104 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.015368,
17-03-18 05:05:12.794 -07 000000480 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:05:12.794 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-18 05:05:12.824 -07 000000480 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:05:12.824 -07 000000480 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:05:12.954 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:05:12.994 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:15.334 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:15.364 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:15.784 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:15.814 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:15.814 -07 000000480 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:05:15.814 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:05:15.814 -07 000000480 INF: ===================  ===================
17-03-18 05:05:16.734 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:17.464 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.05619,
17-03-18 05:05:21.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:22.824 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.03576,
17-03-18 05:05:26.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:28.184 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.018051,
17-03-18 05:05:31.734 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:31.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:33.544 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.019446,
17-03-18 05:05:36.734 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:38.904 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.98264,
17-03-18 05:05:41.584 -07 000000608 INF: WaitCommand(30000) end
17-03-18 05:05:41.584 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 22° ===================
17-03-18 05:05:41.584 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:05:41.584 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:05:41.594 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:05:41.594 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:05:41.594 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:05:41.594 -07 000000479 INF: FPGA: Recv TEC2EN 
17-03-18 05:05:41.604 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:05:41.604 -07 000000610 INF: =================== Cycle #133, Flow Cell Temp 22° ===================
17-03-18 05:05:41.604 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:05:41.604 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:05:41.604 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:05:41.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:41.634 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:05:41.634 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:05:41.634 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:05:41.734 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:41.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1826, R2=1896, Total=3722. Warn if over 250 bubbles per interval.
17-03-18 05:05:41.764 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:05:41.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:44.264 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.958108,
17-03-18 05:05:44.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:44.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:45.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:45.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:45.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:45.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:45.864 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:05:45.864 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:05:45.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:46.024 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:05:46.024 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:05:46.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:46.184 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:05:46.184 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:05:46.184 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:05:46.314 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:05:46.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:46.734 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:05:46.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:05:46.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:46.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:46.804 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:05:46.804 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:05:48.024 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:05:48.024 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:05:48.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:05:48.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:05:48.044 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:05:48.044 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:05:48.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:05:48.214 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:05:48.214 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:05:48.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:05:48.284 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:05:48.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:05:48.384 -07 000000610 INF: =================== Cycle #133, Pumping Reagent USM (2) ===================
17-03-18 05:05:48.384 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:05:48.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:48.414 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:05:48.414 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:05:48.414 -07 000000610 INF: =================== Cycle #133, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:05:48.544 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:05:48.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:49.624 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.96762,
17-03-18 05:05:50.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:50.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:50.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:50.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:50.504 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:05:50.504 -07 000000610 INF: =================== Cycle #133, Pumping Reagent USM (2) ===================
17-03-18 05:05:50.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:50.664 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:05:50.664 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:05:50.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:50.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:05:50.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:05:50.824 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:05:50.954 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:05:50.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:51.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:51.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:51.444 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:05:51.444 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:05:51.734 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:51.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:05:52.664 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:05:52.664 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:05:52.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:05:52.684 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:05:52.684 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:05:52.684 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:05:52.834 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:05:52.854 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:05:52.854 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:05:52.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:05:52.924 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:05:52.924 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:05:53.024 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:05:53.024 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:05:53.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:53.054 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:05:53.054 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:05:53.054 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:05:53.184 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:05:53.224 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:54.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:54.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:54.124 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:05:54.124 -07 000000610 INF: =================== Cycle #133, Pumping Reagent PR2 (3) ===================
17-03-18 05:05:54.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:54.284 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:05:54.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:05:54.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:05:54.444 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:05:54.444 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:05:54.444 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:05:54.574 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:05:54.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:54.984 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.959467,
17-03-18 05:05:55.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:55.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:55.064 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:05:55.064 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:05:55.064 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:05:55.064 -07 000000625 INF: WaitCommand(10000) start
17-03-18 05:05:55.064 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:05:56.284 -07 000000626 INF: AsyncDelayTimer waited 1213ms
17-03-18 05:05:56.284 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 05:05:56.314 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:05:56.314 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:05:56.444 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:05:56.484 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:56.734 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:05:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:05:58.014 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:58.044 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:05:58.464 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 05:05:58.494 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:05:58.494 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:05:58.494 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:05:58.494 -07 000000626 INF: ===================  ===================
17-03-18 05:06:00.344 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.970374,
17-03-18 05:06:01.734 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:01.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:05.074 -07 000000625 INF: WaitCommand(10000) end
17-03-18 05:06:05.074 -07 000000610 INF: =================== Cycle #133, Imaging ===================
17-03-18 05:06:05.074 -07 000000610 INF: Imaging Cycle 133: ScanTilesCommand Cycle 133 time start.
17-03-18 05:06:05.074 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:06:05.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:06:05.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:06:05.104 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:06:05.104 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:06:05.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:06:05.424 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:06:05.424 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:06:05.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:06:05.494 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:06:05.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:05.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:05.494 -07 000000502 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:06:05.494 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:05.494 -07 000000502 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:06:05.494 -07 000000579 INF: FPGA: Recv EXLED1ON 
17-03-18 05:06:05.504 -07 000000502 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:05.504 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:06:05.504 -07 000000467 INF: FPGA: Recv EXLED1ADCR 23229
17-03-18 05:06:05.514 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:05.514 -07 000000502 INF: RedLED: Using Red data: Photodiode ADC 23229 --> 7.5 mW (old method), or 205.9 mW (new method). Difference = 198.4 mW
17-03-18 05:06:05.514 -07 000000502 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:06:05.514 -07 000000581 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:06:05.524 -07 000000502 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:05.524 -07 000000502 INF: RedLED: LED was on for 20 ms
17-03-18 05:06:05.524 -07 000000502 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:06:05.524 -07 000000502 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:06:05.524 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:05.524 -07 000000502 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:06:05.524 -07 000000479 INF: FPGA: Recv EXLED2ON 
17-03-18 05:06:05.534 -07 000000502 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:05.534 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:06:05.534 -07 000000625 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 05:06:05.544 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:05.544 -07 000000502 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 05:06:05.544 -07 000000502 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:06:05.544 -07 000000447 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:06:05.554 -07 000000502 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:05.554 -07 000000502 INF: GreenLED: LED was on for 19 ms
17-03-18 05:06:05.554 -07 000000502 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:06:05.554 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:06:05.554 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 05:06:05.564 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:05.564 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:06:05.704 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.008536,
17-03-18 05:06:06.064 -07 000000606 INF: FPGA: Recv EMOUT
17-03-18 05:06:06.064 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:06:06.064 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:06:06.064 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 05:06:06.074 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:06.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:06.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126529140940076. ------
17-03-18 05:06:06.074 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:06.074 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17847 mm
17-03-18 05:06:06.074 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:06.074 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38987, sync = True, waitForSettling = False)
17-03-18 05:06:06.074 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:06.074 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:06:06.074 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 05:06:06.084 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:06.084 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:06.084 -07 000000618 INF: Z Motor: Moving to -0.178471 mm, started at -0.126529 mm, distance = -51.94 um
17-03-18 05:06:06.084 -07 000000382 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:06:06.094 -07 000000618 INF: FPGA: Xmit ZDACW 38987\n [Z Motor]
17-03-18 05:06:06.094 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:06.094 -07 000000608 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:06.094 -07 000000608 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:06:06.094 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:06:06.094 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:06:06.104 -07 000000618 INF: FPGA: 'ZDACW 38987' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:06.104 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:06.114 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:06:06.124 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:06.124 -07 000000461 INF: FPGA: Recv ZDACR 38987
17-03-18 05:06:06.134 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:06:06.134 -07 000000618 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:06:06.304 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:06.304 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:06:06.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:06.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:07.794 -07 000000467 INF: FPGA: Recv YMVTO 122702 24776
17-03-18 05:06:07.794 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1706 ms overall
17-03-18 05:06:07.794 -07 000000608 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:06:07.794 -07 000000608 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:06:07.794 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.467 mm, average velocity = 9.066 mm/sec
17-03-18 05:06:10.644 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:10.644 -07 000000455 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:06:10.654 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:10.654 -07 000000608 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:10.684 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:10.684 -07 000000608 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 05:06:10.684 -07 000000608 INF: Y Motor: Moved to 59.9097 after 4603 ms
17-03-18 05:06:10.684 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178471 mm (DAC = 38987)
17-03-18 05:06:10.694 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.694 -07 000000479 INF: FPGA: Recv ZSGSRD 37069
17-03-18 05:06:10.704 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:06:10.724 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.724 -07 000000579 INF: FPGA: Recv ZSGSRD 37067
17-03-18 05:06:10.734 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:10.734 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.734 -07 000000455 INF: FPGA: Recv ZSGSRD 37080
17-03-18 05:06:10.744 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.764 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.764 -07 000000467 INF: FPGA: Recv ZSGSRD 37068
17-03-18 05:06:10.774 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:10.774 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.774 -07 000000579 INF: FPGA: Recv ZSGSRD 37076
17-03-18 05:06:10.784 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.784 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.784 -07 000000618 INF: FPGA: Recv ZSGSRD 37075
17-03-18 05:06:10.794 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.794 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.794 -07 000000447 INF: FPGA: Recv ZSGSRD 37068
17-03-18 05:06:10.804 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.804 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.804 -07 000000608 INF: FPGA: Recv ZSGSRD 37074
17-03-18 05:06:10.814 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.814 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.814 -07 000000474 INF: FPGA: Recv ZSGSRD 37075
17-03-18 05:06:10.824 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.824 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:10.824 -07 000000579 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:06:10.834 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.834 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:10.834 -07 000000480 INF: FPGA: Recv ZPIEZORD 33238
17-03-18 05:06:10.844 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:10.844 -07 000000625 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.5 V.
17-03-18 05:06:10.844 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37072 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37072 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37067 (-177.6 uncal um), Max = 37080 (-177.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:10.844 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37072, posNoise = 8, negNoise = 5
17-03-18 05:06:10.844 -07 000000625 INF: Z Motor: After move to -0.178471, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:10.844 -07 000000625 INF: Z Motor: Settle wait time = 4606 ms, measure time = 154 ms (allowed 150 ms), total time = 4760 ms
17-03-18 05:06:10.844 -07 000000625 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-18 05:06:10.844 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 05:06:10.844 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:10.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:10.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:10.844 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:10.844 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:10.844 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:10.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:10.854 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:10.854 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:06:10.874 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 05:06:10.874 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:10.874 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:10.874 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:10.884 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:06:10.884 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 35 ms.
17-03-18 05:06:10.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:10.934 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:11.074 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.018051,
17-03-18 05:06:11.234 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:11.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:11.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:11.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575872336, 0x0, 559484976) start.
17-03-18 05:06:11.274 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:11.274 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:11.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:06:11.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575872336, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:06:11.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:11.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:11.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:06:11.374 -07 000000455 INF: Image SNR check: start
17-03-18 05:06:11.374 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:11.374 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:11.384 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:11.384 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:11.384 -07 000000455 INF: Image SNR check: pass  [peak (Max-Min)=143.80]
17-03-18 05:06:11.384 -07 000000455 INF: Autofocus start
17-03-18 05:06:11.384 -07 000000455 INF: MeasureProfile start
17-03-18 05:06:11.394 -07 000000455 INF: MeasureProfile done
17-03-18 05:06:11.404 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:06:11.404 -07 000000455 INF: Autofocus finished
17-03-18 05:06:11.584 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:11.584 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:11.584 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178481744530497. ----------
17-03-18 05:06:11.594 -07 000000610 INF: Cycle	133	Tile	1	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:11.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37484, sync = True, waitForSettling = True)
17-03-18 05:06:11.594 -07 000000610 INF: Z Motor: Moving to -0.171591 mm, started at -0.178482 mm, distance = 6.89 um
17-03-18 05:06:11.594 -07 000000610 INF: FPGA: Xmit ZDACW 37484\n [Z Motor]
17-03-18 05:06:11.594 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:06:11.604 -07 000000610 INF: FPGA: 'ZDACW 37484' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:11.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:11.604 -07 000000424 INF: FPGA: Recv ZDACR 37484
17-03-18 05:06:11.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:11.734 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:11.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.764 -07 000000502 INF: FPGA: Recv ZSGSRD 36001
17-03-18 05:06:11.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:11.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.774 -07 000000512 INF: FPGA: Recv ZSGSRD 36005
17-03-18 05:06:11.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.784 -07 000000569 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:06:11.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.794 -07 000000579 INF: FPGA: Recv ZSGSRD 35998
17-03-18 05:06:11.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.804 -07 000000625 INF: FPGA: Recv ZSGSRD 36000
17-03-18 05:06:11.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35996
17-03-18 05:06:11.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.824 -07 000000581 INF: FPGA: Recv ZSGSRD 36006
17-03-18 05:06:11.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.834 -07 000000479 INF: FPGA: Recv ZSGSRD 35998
17-03-18 05:06:11.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.844 -07 000000382 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:06:11.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:11.854 -07 000000474 INF: FPGA: Recv ZSGSRD 36005
17-03-18 05:06:11.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:11.864 -07 000000502 INF: FPGA: Recv ZPIEZORD 31807
17-03-18 05:06:11.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:11.874 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.2 V.
17-03-18 05:06:11.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36001 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35996 (-170.7 uncal um), Max = 36006 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:11.874 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36001, posNoise = 5, negNoise = 5
17-03-18 05:06:11.874 -07 000000610 INF: Z Motor: After move to -0.171591, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:11.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:06:11.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:11.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:11.874 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:11.874 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:11.874 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:11.874 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:11.874 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:11.874 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:11.874 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:11.874 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:11.874 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:11.874 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:06:11.884 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:11.884 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:11.884 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:06:11.884 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:06:11.894 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 05:06:11.904 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:11.904 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:06:11.904 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:11.914 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:06:11.914 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-18 05:06:11.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37660 150\n [Camera]
17-03-18 05:06:12.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:06:12.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:12.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:12.554 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:12.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:12.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:12.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:12.554 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:12.554 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:06:12.564 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:12.564 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:06:12.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37660 817
17-03-18 05:06:12.894 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:12.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:06:12.954 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:06:12.954 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:12.954 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:06:12.954 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:06:12.954 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:12.964 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:06:12.964 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:06:12.964 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:06:12.974 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:06:13.104 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:13.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:13.104 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:13.104 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:13.104 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:06:13.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:13.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:13.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:13.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:13.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:06:13.294 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:06:13.294 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:13.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37660 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:06:13.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:13.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171601413326671. ------
17-03-18 05:06:13.304 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:13.304 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17781 mm
17-03-18 05:06:13.304 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:13.304 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:06:13.304 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:06:13.304 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:13.314 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38842, sync = True, waitForSettling = False)
17-03-18 05:06:13.314 -07 000000502 INF: Z Motor: Moving to -0.177807 mm, started at -0.171601 mm, distance = -6.21 um
17-03-18 05:06:13.314 -07 000000502 INF: FPGA: Xmit ZDACW 38842\n [Z Motor]
17-03-18 05:06:13.314 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:13.314 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:06:13.324 -07 000000502 INF: FPGA: 'ZDACW 38842' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:13.324 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:13.334 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:13.334 -07 000000501 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:06:13.344 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:06:13.344 -07 000000618 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:13.344 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:13.344 -07 000000618 INF: Y Motor: Moving 1333 steps1
17-03-18 05:06:13.344 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:13.344 -07 000000474 INF: FPGA: Recv ZDACR 38842
17-03-18 05:06:13.354 -07 000000502 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:13.354 -07 000000502 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:06:13.354 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:13.494 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:06:13.494 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:06:13.494 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:13.494 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:06:13.504 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:06:13.504 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:13.504 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-18 05:06:13.504 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:06:13.504 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:06:13.514 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:06:13.524 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:13.524 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:06:13.724 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:06:13.724 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:06:13.764 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:13.774 -07 000000447 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:06:13.784 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:13.784 -07 000000618 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:13.784 -07 000000618 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:06:13.784 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.833 mm, average velocity = 2.147 mm/sec
17-03-18 05:06:14.734 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:14.734 -07 000000512 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:06:14.744 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.744 -07 000000618 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:14.774 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:14.774 -07 000000618 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:14.774 -07 000000618 INF: Y Motor: Moved to 60.7319 after 1464 ms (table move)
17-03-18 05:06:14.774 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177807 mm (DAC = 38842)
17-03-18 05:06:14.774 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.784 -07 000000480 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:06:14.784 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:06:14.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.784 -07 000000606 INF: FPGA: Recv ZSGSRD 36976
17-03-18 05:06:14.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:14.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.794 -07 000000569 INF: FPGA: Recv ZSGSRD 36961
17-03-18 05:06:14.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.804 -07 000000579 INF: FPGA: Recv ZSGSRD 36960
17-03-18 05:06:14.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.814 -07 000000382 INF: FPGA: Recv ZSGSRD 36968
17-03-18 05:06:14.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.824 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.824 -07 000000618 INF: FPGA: Recv ZSGSRD 36965
17-03-18 05:06:14.834 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.834 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.834 -07 000000461 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:06:14.844 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.844 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.844 -07 000000502 INF: FPGA: Recv ZSGSRD 36972
17-03-18 05:06:14.854 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.854 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.854 -07 000000474 INF: FPGA: Recv ZSGSRD 36975
17-03-18 05:06:14.864 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.864 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:14.864 -07 000000501 INF: FPGA: Recv ZSGSRD 36971
17-03-18 05:06:14.874 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.874 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:14.874 -07 000000579 INF: FPGA: Recv ZPIEZORD 33113
17-03-18 05:06:14.884 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:14.884 -07 000000581 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 05:06:14.884 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36969 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36970 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36960 (-176.9 uncal um), Max = 36976 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:06:14.884 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36969, posNoise = 7, negNoise = 9
17-03-18 05:06:14.884 -07 000000581 INF: Z Motor: After move to -0.177807, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:14.884 -07 000000581 INF: Z Motor: Settle wait time = 1468 ms, measure time = 102 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:06:14.884 -07 000000581 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:14.934 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:06:14.934 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:14.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:14.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:14.934 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:14.934 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:14.934 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:14.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:14.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:14.934 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:14.944 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:14.944 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:14.944 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:06:14.944 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:06:14.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:14.994 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:15.294 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:15.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:15.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:15.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595084848, 0x0, 559484976) start.
17-03-18 05:06:15.334 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:15.334 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:15.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:06:15.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595084848, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:06:15.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:15.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:15.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:06:15.534 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:15.534 -07 000000569 INF: Autofocus start
17-03-18 05:06:15.534 -07 000000569 INF: MeasureProfile start
17-03-18 05:06:15.534 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:15.544 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:15.544 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:15.544 -07 000000569 INF: MeasureProfile done
17-03-18 05:06:15.544 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:06:15.544 -07 000000569 INF: Autofocus finished
17-03-18 05:06:15.744 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:15.744 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:15.744 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177820050679896. ----------
17-03-18 05:06:15.744 -07 000000610 INF: Cycle	133	Tile	2	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:15.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37357, sync = True, waitForSettling = True)
17-03-18 05:06:15.754 -07 000000610 INF: Z Motor: Moving to -0.171009 mm, started at -0.177820 mm, distance = 6.81 um
17-03-18 05:06:15.764 -07 000000610 INF: FPGA: Xmit ZDACW 37357\n [Z Motor]
17-03-18 05:06:15.764 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:06:15.774 -07 000000610 INF: FPGA: 'ZDACW 37357' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:06:15.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:15.774 -07 000000581 INF: FPGA: Recv ZDACR 37357
17-03-18 05:06:15.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:15.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:15.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.934 -07 000000625 INF: FPGA: Recv ZSGSRD 35906
17-03-18 05:06:15.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:15.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.944 -07 000000618 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:06:15.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:15.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.954 -07 000000512 INF: FPGA: Recv ZSGSRD 35908
17-03-18 05:06:15.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:15.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.964 -07 000000606 INF: FPGA: Recv ZSGSRD 35907
17-03-18 05:06:15.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:15.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.974 -07 000000461 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:06:15.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:15.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.984 -07 000000424 INF: FPGA: Recv ZSGSRD 35906
17-03-18 05:06:15.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:15.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:15.994 -07 000000579 INF: FPGA: Recv ZSGSRD 35911
17-03-18 05:06:16.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:16.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:16.004 -07 000000467 INF: FPGA: Recv ZSGSRD 35907
17-03-18 05:06:16.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:16.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:16.014 -07 000000480 INF: FPGA: Recv ZSGSRD 35907
17-03-18 05:06:16.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:16.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:16.024 -07 000000461 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:06:16.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:16.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:16.034 -07 000000512 INF: FPGA: Recv ZPIEZORD 31696
17-03-18 05:06:16.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:16.044 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.3 V.
17-03-18 05:06:16.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35911 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35906 (-170.1 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:16.044 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35911, posNoise = 10, negNoise = 5
17-03-18 05:06:16.044 -07 000000610 INF: Z Motor: After move to -0.171009, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:16.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:06:16.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:16.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:16.044 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:16.044 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:16.044 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:16.044 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:16.044 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:16.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:16.044 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:16.044 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:16.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:16.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:16.054 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:16.054 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:16.054 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:16.054 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:16.064 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:06:16.064 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:06:16.064 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:06:16.064 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:06:16.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37534 150\n [Camera]
17-03-18 05:06:16.274 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:16.434 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.018051,
17-03-18 05:06:16.714 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:16.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:16.714 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:16.714 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:16.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:06:16.714 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:16.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:16.714 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:16.714 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:16.714 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:06:16.734 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:16.904 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 817
17-03-18 05:06:17.054 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:17.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:06:17.114 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:06:17.114 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:17.114 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:06:17.114 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:06:17.114 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:17.114 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:17.114 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:06:17.114 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:17.124 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:06:17.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:17.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:17.264 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:17.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:17.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:17.384 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:17.384 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:17.384 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:06:17.384 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:17.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:06:17.454 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:17.454 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:17.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37534 150' command took 2 ms to send, 1365 ms to get response, and 1386 ms overall
17-03-18 05:06:17.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:17.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171023234233913. ------
17-03-18 05:06:17.464 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:17.464 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17780 mm
17-03-18 05:06:17.464 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:17.464 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38841, sync = True, waitForSettling = False)
17-03-18 05:06:17.464 -07 000000512 INF: Z Motor: Moving to -0.177803 mm, started at -0.171023 mm, distance = -6.78 um
17-03-18 05:06:17.464 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:17.464 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:06:17.464 -07 000000447 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:06:17.474 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:17.474 -07 000000512 INF: FPGA: Xmit ZDACW 38841\n [Z Motor]
17-03-18 05:06:17.474 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:06:17.484 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:17.484 -07 000000512 INF: FPGA: 'ZDACW 38841' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:06:17.484 -07 000000467 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:06:17.494 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:17.494 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:06:17.494 -07 000000447 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:17.494 -07 000000447 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:17.494 -07 000000447 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:06:17.504 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:17.504 -07 000000467 INF: FPGA: Recv ZDACR 38841
17-03-18 05:06:17.514 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:17.514 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:17.514 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:06:17.694 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:17.694 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:06:17.784 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:06:17.784 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:06:17.784 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:17.784 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:06:17.784 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:06:17.784 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:17.784 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:17.784 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:17.784 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 05:06:17.794 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:06:17.884 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:06:17.884 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:06:17.934 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:17.944 -07 000000474 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:06:17.944 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:17.944 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:17.944 -07 000000447 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:06:17.944 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec
17-03-18 05:06:18.894 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:18.894 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:06:18.904 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:18.904 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:18.934 -07 000000447 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:18.934 -07 000000447 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:18.934 -07 000000447 INF: Y Motor: Moved to 61.5630 after 1465 ms (table move)
17-03-18 05:06:18.934 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177803 mm (DAC = 38841)
17-03-18 05:06:18.934 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.934 -07 000000461 INF: FPGA: Recv ZSGSRD 36964
17-03-18 05:06:18.944 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:18.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.944 -07 000000618 INF: FPGA: Recv ZSGSRD 36975
17-03-18 05:06:18.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:18.954 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.954 -07 000000581 INF: FPGA: Recv ZSGSRD 36968
17-03-18 05:06:18.964 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:18.964 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.964 -07 000000608 INF: FPGA: Recv ZSGSRD 36969
17-03-18 05:06:18.974 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:18.974 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.974 -07 000000502 INF: FPGA: Recv ZSGSRD 36967
17-03-18 05:06:18.984 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:18.984 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.984 -07 000000467 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:06:18.994 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:18.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:18.994 -07 000000474 INF: FPGA: Recv ZSGSRD 36968
17-03-18 05:06:19.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:19.004 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:19.004 -07 000000581 INF: FPGA: Recv ZSGSRD 36955
17-03-18 05:06:19.014 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:19.014 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:19.014 -07 000000447 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:06:19.024 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:19.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:19.024 -07 000000625 INF: FPGA: Recv ZSGSRD 36968
17-03-18 05:06:19.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:19.034 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:19.034 -07 000000461 INF: FPGA: Recv ZPIEZORD 33187
17-03-18 05:06:19.044 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:19.044 -07 000000424 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.4 V.
17-03-18 05:06:19.044 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36967 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36968 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36955 (-176.8 uncal um), Max = 36975 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 05:06:19.044 -07 000000424 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36967, posNoise = 8, negNoise = 12
17-03-18 05:06:19.044 -07 000000424 INF: Z Motor: After move to -0.177803, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:19.044 -07 000000424 INF: Z Motor: Settle wait time = 1470 ms, measure time = 105 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:06:19.044 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:19.094 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:06:19.094 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:19.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:19.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:19.094 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:19.094 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:19.094 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:19.094 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:19.094 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:06:19.094 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:19.104 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:19.104 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:19.104 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:06:19.104 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:06:19.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:19.154 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:19.454 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:19.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:19.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:19.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 05:06:19.494 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:19.494 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:19.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:06:19.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:06:19.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:19.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:19.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:06:19.594 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:19.594 -07 000000608 INF: Autofocus start
17-03-18 05:06:19.594 -07 000000608 INF: MeasureProfile start
17-03-18 05:06:19.594 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:19.604 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:19.604 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:19.604 -07 000000608 INF: MeasureProfile done
17-03-18 05:06:19.604 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:06:19.604 -07 000000608 INF: Autofocus finished
17-03-18 05:06:19.804 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:19.804 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:06:19.814 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177807202255612. ----------
17-03-18 05:06:19.814 -07 000000610 INF: Cycle	133	Tile	3	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:19.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-18 05:06:19.814 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.177807 mm, distance = 6.72 um
17-03-18 05:06:19.814 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-18 05:06:19.824 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:06:19.824 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:06:19.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:19.824 -07 000000382 INF: FPGA: Recv ZDACR 37374
17-03-18 05:06:19.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:19.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:19.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:19.984 -07 000000461 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:06:19.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:19.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:19.994 -07 000000479 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:06:20.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.004 -07 000000512 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:06:20.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.014 -07 000000502 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:06:20.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.024 -07 000000608 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:06:20.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.034 -07 000000467 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:06:20.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.044 -07 000000606 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:06:20.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:06:20.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.064 -07 000000569 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:06:20.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:20.074 -07 000000501 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:06:20.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:20.084 -07 000000512 INF: FPGA: Recv ZPIEZORD 31745
17-03-18 05:06:20.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:20.094 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 05:06:20.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35925 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35926 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35917 (-170.2 uncal um), Max = 35927 (-170.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:06:20.094 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35925, posNoise = 2, negNoise = 8
17-03-18 05:06:20.094 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:20.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:06:20.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:20.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:20.094 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:20.094 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:20.094 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:20.094 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:20.094 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:20.094 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:20.094 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:20.094 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:20.094 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:20.094 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:20.104 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:20.104 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:20.104 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:20.104 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:20.114 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:06:20.114 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:06:20.114 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:06:20.114 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:06:20.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37551 150\n [Camera]
17-03-18 05:06:20.314 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:20.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:20.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:20.754 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:20.754 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:20.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:20.754 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:20.754 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:20.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-18 05:06:20.754 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:20.754 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:06:20.944 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 817
17-03-18 05:06:21.094 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:21.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:06:21.144 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:06:21.144 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:21.154 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:06:21.154 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:06:21.154 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:21.154 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:06:21.154 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:06:21.154 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:21.164 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:06:21.304 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1177
17-03-18 05:06:21.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1177
17-03-18 05:06:21.304 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:21.304 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1177
17-03-18 05:06:21.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1177
17-03-18 05:06:21.304 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:21.424 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:21.424 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:06:21.424 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:21.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) start.
17-03-18 05:06:21.494 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:21.494 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:21.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37551 150' command took 2 ms to send, 1372 ms to get response, and 1374 ms overall
17-03-18 05:06:21.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:21.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171113173203897. ------
17-03-18 05:06:21.494 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17734 mm
17-03-18 05:06:21.494 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:21.494 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:06:21.494 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:06:21.494 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-18 05:06:21.494 -07 000000479 INF: Z Motor: Moving to -0.177336 mm, started at -0.171113 mm, distance = -6.22 um
17-03-18 05:06:21.504 -07 000000479 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-18 05:06:21.504 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:06:21.514 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:21.514 -07 000000479 INF: FPGA: 'ZDACW 38739' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:21.514 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:21.524 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:06:21.524 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:21.524 -07 000000606 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:06:21.534 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:21.534 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:06:21.534 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:21.534 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:21.534 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:06:21.534 -07 000000608 INF: FPGA: Recv ZDACR 38739
17-03-18 05:06:21.544 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:21.544 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:21.544 -07 000000479 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:06:21.554 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:21.734 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:21.744 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:21.744 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:06:21.794 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.012614,
17-03-18 05:06:21.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:06:21.814 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:06:21.814 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:21.814 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:06:21.814 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:06:21.814 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:21.824 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:21.824 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:21.824 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 05:06:21.824 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 05:06:21.924 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:06:21.924 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:06:21.974 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:21.984 -07 000000625 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:06:21.984 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:06:21.984 -07 000000501 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:21.984 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:06:21.984 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.126 mm/sec
17-03-18 05:06:22.934 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:22.934 -07 000000474 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:06:22.944 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:22.944 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:22.964 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:22.964 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:06:22.974 -07 000000501 INF: Y Motor: Moved to 62.3950 after 1470 ms (table move)
17-03-18 05:06:22.974 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-18 05:06:22.974 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:22.974 -07 000000512 INF: FPGA: Recv ZSGSRD 36897
17-03-18 05:06:22.984 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:22.984 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:22.984 -07 000000579 INF: FPGA: Recv ZSGSRD 36896
17-03-18 05:06:22.994 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:22.994 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:22.994 -07 000000502 INF: FPGA: Recv ZSGSRD 36895
17-03-18 05:06:23.004 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.004 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.004 -07 000000501 INF: FPGA: Recv ZSGSRD 36894
17-03-18 05:06:23.014 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.014 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.014 -07 000000626 INF: FPGA: Recv ZSGSRD 36892
17-03-18 05:06:23.024 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.024 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.024 -07 000000447 INF: FPGA: Recv ZSGSRD 36891
17-03-18 05:06:23.034 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.034 -07 000000608 INF: FPGA: Recv ZSGSRD 36891
17-03-18 05:06:23.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.044 -07 000000502 INF: FPGA: Recv ZSGSRD 36898
17-03-18 05:06:23.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.054 -07 000000474 INF: FPGA: Recv ZSGSRD 36896
17-03-18 05:06:23.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:23.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36898
17-03-18 05:06:23.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.074 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:23.074 -07 000000447 INF: FPGA: Recv ZPIEZORD 33046
17-03-18 05:06:23.084 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.084 -07 000000455 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.5 V.
17-03-18 05:06:23.084 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36895 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36896 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36891 (-176.4 uncal um), Max = 36898 (-176.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:06:23.084 -07 000000455 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36895, posNoise = 3, negNoise = 4
17-03-18 05:06:23.084 -07 000000455 INF: Z Motor: After move to -0.177336, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:23.084 -07 000000455 INF: Z Motor: Settle wait time = 1473 ms, measure time = 108 ms (allowed 150 ms), total time = 1581 ms
17-03-18 05:06:23.084 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:23.134 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 05:06:23.134 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:23.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:23.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:23.134 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:23.134 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:23.134 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:23.134 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:23.134 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:23.134 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:23.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:23.144 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:23.154 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:06:23.154 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:06:23.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:23.204 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:23.504 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:23.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:23.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:23.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 05:06:23.544 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:23.544 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:23.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:06:23.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 05:06:23.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:23.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:23.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 05:06:23.644 -07 000000502 INF: Autofocus start
17-03-18 05:06:23.644 -07 000000502 INF: MeasureProfile start
17-03-18 05:06:23.644 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:23.644 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:23.654 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:23.654 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:23.654 -07 000000502 INF: MeasureProfile done
17-03-18 05:06:23.654 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:06:23.654 -07 000000502 INF: Autofocus finished
17-03-18 05:06:23.854 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:23.854 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:23.854 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177344658981405. ----------
17-03-18 05:06:23.854 -07 000000610 INF: Cycle	133	Tile	4	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:23.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37236, sync = True, waitForSettling = True)
17-03-18 05:06:23.864 -07 000000610 INF: Z Motor: Moving to -0.170455 mm, started at -0.177345 mm, distance = 6.89 um
17-03-18 05:06:23.864 -07 000000610 INF: FPGA: Xmit ZDACW 37236\n [Z Motor]
17-03-18 05:06:23.864 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:06:23.874 -07 000000610 INF: FPGA: 'ZDACW 37236' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:23.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:23.874 -07 000000579 INF: FPGA: Recv ZDACR 37236
17-03-18 05:06:23.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:23.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:24.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.034 -07 000000581 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:06:24.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.044 -07 000000606 INF: FPGA: Recv ZSGSRD 35824
17-03-18 05:06:24.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35821
17-03-18 05:06:24.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.064 -07 000000474 INF: FPGA: Recv ZSGSRD 35825
17-03-18 05:06:24.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.074 -07 000000569 INF: FPGA: Recv ZSGSRD 35823
17-03-18 05:06:24.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.084 -07 000000424 INF: FPGA: Recv ZSGSRD 35828
17-03-18 05:06:24.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.094 -07 000000502 INF: FPGA: Recv ZSGSRD 35816
17-03-18 05:06:24.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.104 -07 000000480 INF: FPGA: Recv ZSGSRD 35826
17-03-18 05:06:24.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.114 -07 000000474 INF: FPGA: Recv ZSGSRD 35825
17-03-18 05:06:24.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:24.124 -07 000000447 INF: FPGA: Recv ZSGSRD 35824
17-03-18 05:06:24.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:24.134 -07 000000581 INF: FPGA: Recv ZPIEZORD 31645
17-03-18 05:06:24.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:24.144 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.2 V.
17-03-18 05:06:24.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35824 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35824 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35816 (-169.5 uncal um), Max = 35831 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:06:24.144 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35824, posNoise = 7, negNoise = 8
17-03-18 05:06:24.144 -07 000000610 INF: Z Motor: After move to -0.170455, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:24.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:06:24.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:24.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:24.144 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:24.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:24.144 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:24.144 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:24.144 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:24.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:06:24.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:24.144 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:24.144 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:06:24.144 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:24.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:24.154 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:24.154 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:24.154 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:24.164 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:06:24.164 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:06:24.164 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:06:24.164 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:06:24.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37413 150\n [Camera]
17-03-18 05:06:24.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:24.794 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:24.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:24.794 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:24.794 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:24.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:24.794 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:24.794 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:24.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:06:24.804 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:24.804 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) start.
17-03-18 05:06:24.984 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37413 817
17-03-18 05:06:25.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:25.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:06:25.184 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:06:25.184 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:25.184 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:06:25.184 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:06:25.184 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:25.184 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:06:25.194 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:06:25.194 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:06:25.194 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:06:25.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:25.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:25.344 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:25.344 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:25.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:25.344 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:25.344 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:25.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:06:25.354 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:25.354 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:06:25.534 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:25.534 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:25.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37413 150' command took 2 ms to send, 1366 ms to get response, and 1375 ms overall
17-03-18 05:06:25.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:25.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170464327777579. ------
17-03-18 05:06:25.544 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17684 mm
17-03-18 05:06:25.544 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:25.544 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:25.664 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:25.664 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 05:06:25.664 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38631, sync = True, waitForSettling = False)
17-03-18 05:06:25.664 -07 000000569 INF: Z Motor: Moving to -0.176841 mm, started at -0.170464 mm, distance = -6.38 um
17-03-18 05:06:25.664 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:25.664 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:06:25.664 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:06:25.674 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:25.674 -07 000000474 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:06:25.684 -07 000000569 INF: FPGA: Xmit ZDACW 38631\n [Z Motor]
17-03-18 05:06:25.684 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:06:25.684 -07 000000467 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:25.684 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:25.684 -07 000000467 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:06:25.684 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:06:25.694 -07 000000569 INF: FPGA: 'ZDACW 38631' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:25.694 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:25.694 -07 000000480 INF: FPGA: Recv ZDACR 38631
17-03-18 05:06:25.704 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:25.704 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:25.704 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:06:25.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:06:25.734 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:06:25.734 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:25.734 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:06:25.734 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:06:25.734 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:25.734 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:06:25.734 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:06:25.734 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:25.744 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:06:25.864 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:25.864 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:26.074 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:06:26.074 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:06:26.124 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:26.134 -07 000000424 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:06:26.134 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:26.134 -07 000000467 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:26.134 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:06:26.134 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 05:06:26.734 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:27.084 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:27.084 -07 000000608 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:06:27.094 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:27.094 -07 000000467 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:27.124 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:27.124 -07 000000467 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:27.124 -07 000000467 INF: Y Motor: Moved to 63.2227 after 1460 ms (table move)
17-03-18 05:06:27.124 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176841 mm (DAC = 38631)
17-03-18 05:06:27.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.124 -07 000000581 INF: FPGA: Recv ZSGSRD 36818
17-03-18 05:06:27.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:27.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.134 -07 000000461 INF: FPGA: Recv ZSGSRD 36823
17-03-18 05:06:27.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:27.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.154 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.988112,
17-03-18 05:06:27.154 -07 000000625 INF: FPGA: Recv ZSGSRD 36817
17-03-18 05:06:27.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:27.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.174 -07 000000502 INF: FPGA: Recv ZSGSRD 36816
17-03-18 05:06:27.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:27.184 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.184 -07 000000479 INF: FPGA: Recv ZSGSRD 36815
17-03-18 05:06:27.194 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:27.214 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.214 -07 000000447 INF: FPGA: Recv ZSGSRD 36821
17-03-18 05:06:27.224 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:27.224 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.224 -07 000000626 INF: FPGA: Recv ZSGSRD 36812
17-03-18 05:06:27.234 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:27.244 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.244 -07 000000455 INF: FPGA: Recv ZSGSRD 36815
17-03-18 05:06:27.254 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:27.254 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.254 -07 000000618 INF: FPGA: Recv ZSGSRD 36814
17-03-18 05:06:27.264 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:27.264 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:27.264 -07 000000606 INF: FPGA: Recv ZSGSRD 36818
17-03-18 05:06:27.274 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:27.274 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:27.274 -07 000000447 INF: FPGA: Recv ZPIEZORD 32936
17-03-18 05:06:27.284 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:27.284 -07 000000382 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.895 V. Piezo Error = -8.6 V.
17-03-18 05:06:27.284 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36817 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36816 (-175.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36812 (-175.9 uncal um), Max = 36823 (-176.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:27.284 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36817, posNoise = 6, negNoise = 5
17-03-18 05:06:27.284 -07 000000382 INF: Z Motor: After move to -0.176841, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:27.284 -07 000000382 INF: Z Motor: Settle wait time = 1464 ms, measure time = 155 ms (allowed 150 ms), total time = 1619 ms
17-03-18 05:06:27.284 -07 000000382 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 05:06:27.284 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-18 05:06:27.284 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:27.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:27.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:27.284 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:27.284 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:27.284 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:27.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:27.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:27.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:27.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:27.294 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:27.304 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:06:27.304 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:06:27.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:27.354 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:27.654 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:27.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:27.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:27.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:06:27.694 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:27.694 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:27.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:06:27.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:06:27.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:27.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:27.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:06:27.794 -07 000000569 INF: Autofocus start
17-03-18 05:06:27.794 -07 000000569 INF: MeasureProfile start
17-03-18 05:06:27.794 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:27.794 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:27.804 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:27.804 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:27.804 -07 000000569 INF: MeasureProfile done
17-03-18 05:06:27.804 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:06:27.804 -07 000000569 INF: Autofocus finished
17-03-18 05:06:28.004 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:28.004 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:28.014 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176843570434348. ----------
17-03-18 05:06:28.014 -07 000000610 INF: Cycle	133	Tile	5	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:28.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37128, sync = True, waitForSettling = True)
17-03-18 05:06:28.014 -07 000000610 INF: Z Motor: Moving to -0.169961 mm, started at -0.176844 mm, distance = 6.88 um
17-03-18 05:06:28.014 -07 000000610 INF: FPGA: Xmit ZDACW 37128\n [Z Motor]
17-03-18 05:06:28.024 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:06:28.024 -07 000000610 INF: FPGA: 'ZDACW 37128' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 05:06:28.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:28.024 -07 000000467 INF: FPGA: Recv ZDACR 37128
17-03-18 05:06:28.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:06:28.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:28.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.184 -07 000000479 INF: FPGA: Recv ZSGSRD 35747
17-03-18 05:06:28.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:28.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.194 -07 000000447 INF: FPGA: Recv ZSGSRD 35751
17-03-18 05:06:28.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.204 -07 000000474 INF: FPGA: Recv ZSGSRD 35742
17-03-18 05:06:28.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.214 -07 000000382 INF: FPGA: Recv ZSGSRD 35740
17-03-18 05:06:28.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.224 -07 000000467 INF: FPGA: Recv ZSGSRD 35744
17-03-18 05:06:28.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.234 -07 000000479 INF: FPGA: Recv ZSGSRD 35747
17-03-18 05:06:28.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35743
17-03-18 05:06:28.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35741
17-03-18 05:06:28.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.264 -07 000000461 INF: FPGA: Recv ZSGSRD 35744
17-03-18 05:06:28.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:28.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:28.274 -07 000000382 INF: FPGA: Recv ZSGSRD 35750
17-03-18 05:06:28.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:28.284 -07 000000455 INF: FPGA: Recv ZPIEZORD 31552
17-03-18 05:06:28.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:28.294 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -9.3 V.
17-03-18 05:06:28.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35745 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35744 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35740 (-169.1 uncal um), Max = 35751 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:28.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35745, posNoise = 6, negNoise = 5
17-03-18 05:06:28.294 -07 000000610 INF: Z Motor: After move to -0.169961, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:28.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 05:06:28.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:28.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:28.294 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:28.294 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:28.294 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:28.294 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:28.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:28.294 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:28.294 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:28.294 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:28.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:28.294 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:28.294 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:28.294 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:28.304 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:28.304 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:28.304 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:06:28.304 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:06:28.314 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:06:28.314 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:06:28.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37305 150\n [Camera]
17-03-18 05:06:28.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:28.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:28.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:28.954 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:28.954 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:28.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:28.954 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:28.954 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:28.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:06:28.964 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:28.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:06:29.144 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37305 817
17-03-18 05:06:29.294 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:29.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:06:29.334 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:06:29.334 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:29.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:06:29.334 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:06:29.334 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:29.334 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:29.334 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:06:29.334 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:29.344 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:06:29.504 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1177
17-03-18 05:06:29.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1177
17-03-18 05:06:29.504 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:29.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1177
17-03-18 05:06:29.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1177
17-03-18 05:06:29.504 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:29.514 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:29.514 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:06:29.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:29.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:06:29.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:06:29.694 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:29.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37305 150' command took 2 ms to send, 1374 ms to get response, and 1378 ms overall
17-03-18 05:06:29.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:29.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.16995681501838. ------
17-03-18 05:06:29.704 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:29.704 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17632 mm
17-03-18 05:06:29.704 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:29.704 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:06:29.704 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:06:29.704 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38517, sync = True, waitForSettling = False)
17-03-18 05:06:29.704 -07 000000502 INF: Z Motor: Moving to -0.176320 mm, started at -0.169957 mm, distance = -6.36 um
17-03-18 05:06:29.704 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:29.714 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:29.714 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:29.714 -07 000000579 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:06:29.724 -07 000000502 INF: FPGA: Xmit ZDACW 38517\n [Z Motor]
17-03-18 05:06:29.724 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:06:29.724 -07 000000626 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:29.724 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:29.724 -07 000000626 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:06:29.724 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:06:29.734 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:29.734 -07 000000502 INF: FPGA: 'ZDACW 38517' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:06:29.744 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:29.754 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:29.754 -07 000000467 INF: FPGA: Recv ZDACR 38517
17-03-18 05:06:29.764 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:29.764 -07 000000502 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:06:29.894 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:06:29.894 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:06:29.894 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:29.904 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:29.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:06:29.904 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:06:29.904 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:29.904 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:06:29.904 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:29.904 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:06:29.934 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:29.934 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:06:30.114 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:06:30.114 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:06:30.164 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:30.174 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:06:30.174 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:30.174 -07 000000626 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:30.174 -07 000000626 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:06:30.174 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 05:06:31.124 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:31.124 -07 000000382 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:06:31.134 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.134 -07 000000626 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:31.164 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:31.164 -07 000000626 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:31.164 -07 000000626 INF: Y Motor: Moved to 64.0562 after 1458 ms (table move)
17-03-18 05:06:31.164 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176320 mm (DAC = 38517)
17-03-18 05:06:31.164 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.164 -07 000000512 INF: FPGA: Recv ZSGSRD 36739
17-03-18 05:06:31.174 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:31.174 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.174 -07 000000618 INF: FPGA: Recv ZSGSRD 36741
17-03-18 05:06:31.184 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.184 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.184 -07 000000606 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:06:31.194 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.194 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.194 -07 000000608 INF: FPGA: Recv ZSGSRD 36732
17-03-18 05:06:31.204 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.204 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.204 -07 000000479 INF: FPGA: Recv ZSGSRD 36736
17-03-18 05:06:31.214 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.214 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.214 -07 000000447 INF: FPGA: Recv ZSGSRD 36735
17-03-18 05:06:31.224 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.224 -07 000000455 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:06:31.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.234 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.234 -07 000000626 INF: FPGA: Recv ZSGSRD 36731
17-03-18 05:06:31.244 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.244 -07 000000424 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:06:31.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:31.254 -07 000000461 INF: FPGA: Recv ZSGSRD 36743
17-03-18 05:06:31.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.264 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:31.264 -07 000000626 INF: FPGA: Recv ZPIEZORD 32878
17-03-18 05:06:31.274 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:31.274 -07 000000569 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.5 V.
17-03-18 05:06:31.274 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36737 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36743 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:06:31.274 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36737, posNoise = 6, negNoise = 6
17-03-18 05:06:31.274 -07 000000569 INF: Z Motor: After move to -0.176320, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:31.274 -07 000000569 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:06:31.274 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:31.324 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 05:06:31.324 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:31.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:31.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:31.324 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:31.324 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:31.324 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:31.324 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:31.324 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:06:31.324 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:31.334 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:31.334 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:31.334 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:06:31.334 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:06:31.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:31.384 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:31.684 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:31.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:31.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:31.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:06:31.724 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:31.724 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:31.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 05:06:31.734 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:31.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:06:31.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:31.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:31.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:06:31.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:31.824 -07 000000512 INF: Autofocus start
17-03-18 05:06:31.824 -07 000000512 INF: MeasureProfile start
17-03-18 05:06:31.824 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:31.824 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:31.834 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:31.834 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:31.834 -07 000000512 INF: MeasureProfile done
17-03-18 05:06:31.834 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:06:31.834 -07 000000512 INF: Autofocus finished
17-03-18 05:06:32.034 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:32.034 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:06:32.044 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176329633463007. ----------
17-03-18 05:06:32.044 -07 000000610 INF: Cycle	133	Tile	6	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:32.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37050, sync = True, waitForSettling = True)
17-03-18 05:06:32.044 -07 000000610 INF: Z Motor: Moving to -0.169604 mm, started at -0.176330 mm, distance = 6.73 um
17-03-18 05:06:32.044 -07 000000610 INF: FPGA: Xmit ZDACW 37050\n [Z Motor]
17-03-18 05:06:32.044 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:06:32.054 -07 000000610 INF: FPGA: 'ZDACW 37050' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:32.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:32.054 -07 000000618 INF: FPGA: Recv ZDACR 37050
17-03-18 05:06:32.064 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:32.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.214 -07 000000502 INF: FPGA: Recv ZSGSRD 35693
17-03-18 05:06:32.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:32.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.234 -07 000000581 INF: FPGA: Recv ZSGSRD 35690
17-03-18 05:06:32.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:32.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.264 -07 000000467 INF: FPGA: Recv ZSGSRD 35690
17-03-18 05:06:32.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:32.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.274 -07 000000447 INF: FPGA: Recv ZSGSRD 35694
17-03-18 05:06:32.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.284 -07 000000625 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:06:32.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.294 -07 000000382 INF: FPGA: Recv ZSGSRD 35691
17-03-18 05:06:32.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.304 -07 000000424 INF: FPGA: Recv ZSGSRD 35692
17-03-18 05:06:32.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.314 -07 000000467 INF: FPGA: Recv ZSGSRD 35695
17-03-18 05:06:32.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.324 -07 000000569 INF: FPGA: Recv ZSGSRD 35692
17-03-18 05:06:32.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:32.334 -07 000000625 INF: FPGA: Recv ZSGSRD 35693
17-03-18 05:06:32.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:32.344 -07 000000455 INF: FPGA: Recv ZPIEZORD 31465
17-03-18 05:06:32.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:32.354 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.3 V.
17-03-18 05:06:32.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35692 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35692 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35689 (-168.7 uncal um), Max = 35695 (-168.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:06:32.354 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35692, posNoise = 3, negNoise = 3
17-03-18 05:06:32.354 -07 000000610 INF: Z Motor: After move to -0.169604, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:32.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-18 05:06:32.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:32.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:32.354 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:32.354 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:32.354 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:32.354 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:32.354 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:32.354 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:32.354 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:06:32.354 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:32.354 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:32.354 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:32.364 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:32.364 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:32.364 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:32.364 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:32.364 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:06:32.364 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:06:32.364 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:06:32.364 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:06:32.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37227 150\n [Camera]
17-03-18 05:06:32.564 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.996267,
17-03-18 05:06:32.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:33.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:06:33.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:06:33.004 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:33.004 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:33.004 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:06:33.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:06:33.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:06:33.004 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:33.004 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:33.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:06:33.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37227 817
17-03-18 05:06:33.344 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:33.404 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:06:33.404 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:06:33.404 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:33.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:06:33.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:06:33.404 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:33.414 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:33.414 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:06:33.414 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:33.414 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:06:33.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:33.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:33.554 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:33.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:33.554 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:33.554 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:06:33.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:33.554 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:33.554 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:33.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:06:33.744 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:33.744 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:33.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37227 150' command took 2 ms to send, 1366 ms to get response, and 1374 ms overall
17-03-18 05:06:33.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:33.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169616331774867. ------
17-03-18 05:06:33.754 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:33.754 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17596 mm
17-03-18 05:06:33.754 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:33.754 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:06:33.754 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:06:33.754 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38438, sync = True, waitForSettling = False)
17-03-18 05:06:33.754 -07 000000424 INF: Z Motor: Moving to -0.175958 mm, started at -0.169616 mm, distance = -6.34 um
17-03-18 05:06:33.754 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:33.874 -07 000000424 INF: FPGA: Xmit ZDACW 38438\n [Z Motor]
17-03-18 05:06:33.874 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 05:06:33.874 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:06:33.884 -07 000000424 INF: FPGA: 'ZDACW 38438' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 05:06:33.884 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:33.884 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:06:33.894 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:33.894 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 05:06:33.894 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:33.894 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:33.894 -07 000000502 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:06:33.904 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:33.904 -07 000000608 INF: FPGA: Recv ZDACR 38438
17-03-18 05:06:33.914 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:33.914 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:06:33.914 -07 000000424 INF: Z Motor: MoveAbsStepped took 155 ms (did NOT wait for settling yet))
17-03-18 05:06:33.954 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:06:33.954 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:06:33.954 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:06:33.954 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:33.954 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:06:33.954 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:33.964 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:33.964 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:06:33.964 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:33.974 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:06:34.094 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:34.094 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 05:06:34.284 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:06:34.284 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:06:34.334 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:34.344 -07 000000474 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:06:34.344 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:06:34.344 -07 000000502 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:34.344 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:06:34.344 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.107 mm/sec
17-03-18 05:06:35.294 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:35.294 -07 000000424 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:06:35.304 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.304 -07 000000502 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:35.334 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:35.334 -07 000000502 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:35.334 -07 000000502 INF: Y Motor: Moved to 64.8779 after 1576 ms (table move)
17-03-18 05:06:35.334 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175958 mm (DAC = 38438)
17-03-18 05:06:35.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.334 -07 000000479 INF: FPGA: Recv ZSGSRD 36678
17-03-18 05:06:35.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:35.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.344 -07 000000581 INF: FPGA: Recv ZSGSRD 36682
17-03-18 05:06:35.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.354 -07 000000579 INF: FPGA: Recv ZSGSRD 36682
17-03-18 05:06:35.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.364 -07 000000569 INF: FPGA: Recv ZSGSRD 36687
17-03-18 05:06:35.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.374 -07 000000608 INF: FPGA: Recv ZSGSRD 36685
17-03-18 05:06:35.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.384 -07 000000480 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:06:35.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.394 -07 000000467 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:06:35.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.404 -07 000000455 INF: FPGA: Recv ZSGSRD 36674
17-03-18 05:06:35.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.414 -07 000000479 INF: FPGA: Recv ZSGSRD 36685
17-03-18 05:06:35.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:35.424 -07 000000579 INF: FPGA: Recv ZSGSRD 36684
17-03-18 05:06:35.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.434 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:35.434 -07 000000382 INF: FPGA: Recv ZPIEZORD 32747
17-03-18 05:06:35.444 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:35.444 -07 000000626 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.7 V.
17-03-18 05:06:35.444 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36681 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36682 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36674 (-175.0 uncal um), Max = 36687 (-175.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:06:35.444 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36681, posNoise = 6, negNoise = 7
17-03-18 05:06:35.444 -07 000000626 INF: Z Motor: After move to -0.175958, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:35.444 -07 000000626 INF: Z Motor: Settle wait time = 1580 ms, measure time = 105 ms (allowed 150 ms), total time = 1685 ms
17-03-18 05:06:35.444 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:35.494 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 05:06:35.494 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:35.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:35.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:35.494 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:35.494 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:35.494 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:35.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:35.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:35.494 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:35.504 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:35.504 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:35.514 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:06:35.514 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:06:35.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:35.564 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:35.864 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:35.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:35.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:35.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:06:35.904 -07 000000579 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:06:35.904 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:35.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 05:06:35.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:06:35.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:35.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:06:35.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:06:36.004 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:36.004 -07 000000512 INF: Autofocus start
17-03-18 05:06:36.004 -07 000000512 INF: MeasureProfile start
17-03-18 05:06:36.014 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:36.014 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:36.014 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:36.024 -07 000000512 INF: MeasureProfile done
17-03-18 05:06:36.024 -07 000000512 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:06:36.024 -07 000000512 INF: Autofocus finished
17-03-18 05:06:36.214 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:36.214 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:36.214 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.175969877583069. ----------
17-03-18 05:06:36.214 -07 000000610 INF: Cycle	133	Tile	7	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:36.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36918, sync = True, waitForSettling = True)
17-03-18 05:06:36.224 -07 000000610 INF: Z Motor: Moving to -0.169000 mm, started at -0.175970 mm, distance = 6.97 um
17-03-18 05:06:36.224 -07 000000610 INF: FPGA: Xmit ZDACW 36918\n [Z Motor]
17-03-18 05:06:36.224 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:06:36.234 -07 000000610 INF: FPGA: 'ZDACW 36918' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:36.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:36.234 -07 000000606 INF: FPGA: Recv ZDACR 36918
17-03-18 05:06:36.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:36.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.394 -07 000000625 INF: FPGA: Recv ZSGSRD 35599
17-03-18 05:06:36.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:36.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.404 -07 000000608 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:06:36.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35600
17-03-18 05:06:36.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.424 -07 000000455 INF: FPGA: Recv ZSGSRD 35590
17-03-18 05:06:36.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.434 -07 000000501 INF: FPGA: Recv ZSGSRD 35602
17-03-18 05:06:36.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35590
17-03-18 05:06:36.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35592
17-03-18 05:06:36.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.464 -07 000000467 INF: FPGA: Recv ZSGSRD 35603
17-03-18 05:06:36.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.474 -07 000000626 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:06:36.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:36.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35599
17-03-18 05:06:36.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:36.494 -07 000000625 INF: FPGA: Recv ZPIEZORD 31343
17-03-18 05:06:36.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:36.504 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.4 V.
17-03-18 05:06:36.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35590 (-168.1 uncal um), Max = 35603 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:06:36.504 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 7, negNoise = 6
17-03-18 05:06:36.504 -07 000000610 INF: Z Motor: After move to -0.169000, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:36.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:06:36.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:36.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:36.504 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:36.504 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:36.504 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:36.504 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:36.504 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:36.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:36.504 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:06:36.504 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:36.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:36.504 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:36.514 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:36.514 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:36.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:06:36.514 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:36.524 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:06:36.524 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:06:36.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:06:36.524 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:06:36.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37095 150\n [Camera]
17-03-18 05:06:36.724 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:36.734 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:37.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:37.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:37.154 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:37.154 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:37.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:37.164 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:37.164 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:37.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:06:37.164 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:37.164 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:06:37.344 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37095 817
17-03-18 05:06:37.494 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:37.534 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 05:06:37.534 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 05:06:37.534 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:37.534 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:37.534 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:06:37.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:06:37.534 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:37.544 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:37.544 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:06:37.544 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:06:37.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:37.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:37.704 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:37.714 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:37.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:37.714 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:37.714 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:37.714 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:37.714 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:06:37.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:06:37.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:37.894 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:37.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37095 150' command took 2 ms to send, 1369 ms to get response, and 1374 ms overall
17-03-18 05:06:37.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:37.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.168999607409258. ------
17-03-18 05:06:37.904 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:38.024 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17559 mm
17-03-18 05:06:38.024 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:38.024 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:38.024 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:06:38.024 -07 000000479 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:06:38.024 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38357, sync = True, waitForSettling = False)
17-03-18 05:06:38.024 -07 000000467 INF: Z Motor: Moving to -0.175587 mm, started at -0.169000 mm, distance = -6.59 um
17-03-18 05:06:38.034 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 117 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 05:06:38.034 -07 000000467 INF: FPGA: Xmit ZDACW 38357\n [Z Motor]
17-03-18 05:06:38.034 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:06:38.044 -07 000000467 INF: FPGA: 'ZDACW 38357' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:06:38.054 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:38.054 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.994908,
17-03-18 05:06:38.054 -07 000000512 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:06:38.064 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:38.064 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 05:06:38.064 -07 000000479 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:38.064 -07 000000479 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:38.064 -07 000000479 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:06:38.074 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:38.074 -07 000000512 INF: FPGA: Recv ZDACR 38357
17-03-18 05:06:38.084 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:06:38.084 -07 000000467 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:06:38.094 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:38.104 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:06:38.104 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:06:38.104 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:38.114 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:06:38.114 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:06:38.114 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:38.114 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:38.114 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:38.114 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:06:38.124 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:06:38.264 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:38.264 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:06:38.464 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:06:38.464 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:06:38.514 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:38.524 -07 000000512 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:06:38.524 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:06:38.524 -07 000000479 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:38.524 -07 000000479 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:06:38.524 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.845 mm, average velocity = 2.075 mm/sec
17-03-18 05:06:39.474 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:39.474 -07 000000512 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:06:39.484 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.484 -07 000000479 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:39.514 -07 000000479 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:39.514 -07 000000479 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:06:39.514 -07 000000479 INF: Y Motor: Moved to 65.7134 after 1490 ms (table move)
17-03-18 05:06:39.524 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175587 mm (DAC = 38357)
17-03-18 05:06:39.524 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.524 -07 000000447 INF: FPGA: Recv ZSGSRD 36628
17-03-18 05:06:39.534 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.534 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.534 -07 000000479 INF: FPGA: Recv ZSGSRD 36624
17-03-18 05:06:39.544 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.544 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.544 -07 000000467 INF: FPGA: Recv ZSGSRD 36617
17-03-18 05:06:39.554 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.554 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.554 -07 000000461 INF: FPGA: Recv ZSGSRD 36618
17-03-18 05:06:39.564 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.564 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.564 -07 000000474 INF: FPGA: Recv ZSGSRD 36619
17-03-18 05:06:39.574 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.574 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.574 -07 000000618 INF: FPGA: Recv ZSGSRD 36622
17-03-18 05:06:39.584 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.584 -07 000000455 INF: FPGA: Recv ZSGSRD 36623
17-03-18 05:06:39.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.594 -07 000000608 INF: FPGA: Recv ZSGSRD 36630
17-03-18 05:06:39.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.604 -07 000000461 INF: FPGA: Recv ZSGSRD 36620
17-03-18 05:06:39.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:39.614 -07 000000501 INF: FPGA: Recv ZSGSRD 36624
17-03-18 05:06:39.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.624 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:39.624 -07 000000480 INF: FPGA: Recv ZPIEZORD 32694
17-03-18 05:06:39.634 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:39.634 -07 000000569 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.7 V.
17-03-18 05:06:39.634 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36622 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36622 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36617 (-174.7 uncal um), Max = 36630 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:39.634 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36622, posNoise = 8, negNoise = 5
17-03-18 05:06:39.634 -07 000000569 INF: Z Motor: After move to -0.175587, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:39.634 -07 000000569 INF: Z Motor: Settle wait time = 1493 ms, measure time = 111 ms (allowed 150 ms), total time = 1604 ms
17-03-18 05:06:39.634 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:39.674 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 05:06:39.674 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:39.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:39.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:39.674 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:39.674 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:39.674 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:39.674 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:39.674 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:39.674 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:39.684 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:39.684 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:39.694 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:06:39.694 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:06:39.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:39.734 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:40.034 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:40.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:40.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:40.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:06:40.074 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:40.074 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:40.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:06:40.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:06:40.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:40.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:06:40.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:06:40.174 -07 000000626 INF: Autofocus start
17-03-18 05:06:40.174 -07 000000626 INF: MeasureProfile start
17-03-18 05:06:40.174 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:40.174 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:40.184 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:40.184 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:40.184 -07 000000626 INF: MeasureProfile done
17-03-18 05:06:40.184 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:06:40.184 -07 000000626 INF: Autofocus finished
17-03-18 05:06:40.384 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:40.384 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:40.384 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175590849066705. ----------
17-03-18 05:06:40.384 -07 000000610 INF: Cycle	133	Tile	8	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:40.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36908, sync = True, waitForSettling = True)
17-03-18 05:06:40.394 -07 000000610 INF: Z Motor: Moving to -0.168954 mm, started at -0.175591 mm, distance = 6.64 um
17-03-18 05:06:40.394 -07 000000610 INF: FPGA: Xmit ZDACW 36908\n [Z Motor]
17-03-18 05:06:40.394 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:06:40.404 -07 000000610 INF: FPGA: 'ZDACW 36908' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:40.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:40.404 -07 000000455 INF: FPGA: Recv ZDACR 36908
17-03-18 05:06:40.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:40.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.564 -07 000000461 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:06:40.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.574 -07 000000480 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:06:40.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.584 -07 000000618 INF: FPGA: Recv ZSGSRD 35588
17-03-18 05:06:40.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.594 -07 000000382 INF: FPGA: Recv ZSGSRD 35591
17-03-18 05:06:40.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.604 -07 000000479 INF: FPGA: Recv ZSGSRD 35584
17-03-18 05:06:40.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.614 -07 000000569 INF: FPGA: Recv ZSGSRD 35580
17-03-18 05:06:40.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.624 -07 000000626 INF: FPGA: Recv ZSGSRD 35595
17-03-18 05:06:40.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.634 -07 000000618 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:06:40.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35591
17-03-18 05:06:40.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:40.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35597
17-03-18 05:06:40.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:40.664 -07 000000447 INF: FPGA: Recv ZPIEZORD 31332
17-03-18 05:06:40.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:40.674 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.4 V.
17-03-18 05:06:40.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35591 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35597 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:06:40.674 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35591, posNoise = 6, negNoise = 11
17-03-18 05:06:40.674 -07 000000610 INF: Z Motor: After move to -0.168954, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:40.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:06:40.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:40.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:40.674 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:40.674 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:40.674 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:40.674 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:40.674 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:40.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:40.674 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:40.674 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:40.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:40.674 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:40.684 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:40.684 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:40.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:40.684 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:40.694 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:06:40.694 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:06:40.694 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:06:40.694 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:06:40.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37085 150\n [Camera]
17-03-18 05:06:40.894 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:41.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:41.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:41.334 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:41.334 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:41.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:41.334 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:41.334 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:41.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:06:41.334 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:41.334 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:06:41.524 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37085 817
17-03-18 05:06:41.664 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:41.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:06:41.704 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:06:41.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:41.714 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:06:41.714 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:06:41.714 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:41.714 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:41.714 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:06:41.714 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:06:41.724 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:06:41.734 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:41.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:41.874 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:41.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:41.874 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:41.884 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:41.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:41.884 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:41.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:41.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:06:41.884 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:41.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:06:42.064 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:06:42.074 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:42.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37085 150' command took 2 ms to send, 1370 ms to get response, and 1375 ms overall
17-03-18 05:06:42.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:42.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168967486348549. ------
17-03-18 05:06:42.074 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:42.074 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17541 mm
17-03-18 05:06:42.074 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:42.084 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:42.084 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:06:42.084 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38318, sync = True, waitForSettling = False)
17-03-18 05:06:42.084 -07 000000447 INF: Z Motor: Moving to -0.175409 mm, started at -0.168967 mm, distance = -6.44 um
17-03-18 05:06:42.084 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:42.084 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:06:42.084 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:06:42.094 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:42.094 -07 000000625 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:06:42.104 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:06:42.104 -07 000000447 INF: FPGA: Xmit ZDACW 38318\n [Z Motor]
17-03-18 05:06:42.104 -07 000000618 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:42.104 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:42.104 -07 000000618 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:06:42.104 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:06:42.114 -07 000000447 INF: FPGA: 'ZDACW 38318' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:42.114 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:42.114 -07 000000455 INF: FPGA: Recv ZDACR 38318
17-03-18 05:06:42.124 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:42.124 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:42.124 -07 000000447 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:06:42.274 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:06:42.274 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:06:42.274 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:42.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:06:42.284 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:06:42.284 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:42.284 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:42.284 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:42.284 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:06:42.284 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:42.284 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:06:42.284 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:06:42.494 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:06:42.494 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:06:42.544 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:42.554 -07 000000467 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:06:42.554 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:06:42.554 -07 000000618 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:42.554 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:06:42.554 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 05:06:43.454 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.975845,
17-03-18 05:06:43.504 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:43.504 -07 000000608 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:06:43.514 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:43.514 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:43.544 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:43.544 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:06:43.544 -07 000000618 INF: Y Motor: Moved to 66.5386 after 1461 ms (table move)
17-03-18 05:06:43.544 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175409 mm (DAC = 38318)
17-03-18 05:06:43.544 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.544 -07 000000625 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:06:43.554 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:06:43.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.554 -07 000000606 INF: FPGA: Recv ZSGSRD 36600
17-03-18 05:06:43.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.564 -07 000000382 INF: FPGA: Recv ZSGSRD 36597
17-03-18 05:06:43.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.574 -07 000000579 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:06:43.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.584 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.584 -07 000000502 INF: FPGA: Recv ZSGSRD 36596
17-03-18 05:06:43.594 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.594 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.594 -07 000000501 INF: FPGA: Recv ZSGSRD 36587
17-03-18 05:06:43.604 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.604 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.604 -07 000000626 INF: FPGA: Recv ZSGSRD 36597
17-03-18 05:06:43.614 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.614 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.614 -07 000000382 INF: FPGA: Recv ZSGSRD 36599
17-03-18 05:06:43.624 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.624 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.624 -07 000000479 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:06:43.634 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.634 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:43.634 -07 000000455 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:06:43.644 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.644 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:43.644 -07 000000502 INF: FPGA: Recv ZPIEZORD 32673
17-03-18 05:06:43.654 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:43.654 -07 000000461 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.7 V.
17-03-18 05:06:43.654 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36598 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36587 (-174.5 uncal um), Max = 36600 (-174.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:06:43.654 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 4, negNoise = 9
17-03-18 05:06:43.654 -07 000000461 INF: Z Motor: After move to -0.175409, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:43.654 -07 000000461 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:06:43.654 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:43.704 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:06:43.704 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:43.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:43.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:43.704 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:43.704 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:43.704 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:43.704 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:43.704 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:43.704 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:43.704 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:43.714 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:43.724 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:06:43.724 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:06:43.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:43.774 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:44.074 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:44.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:44.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:44.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:06:44.114 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:44.114 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:44.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:06:44.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:06:44.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:44.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:44.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:06:44.214 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:44.214 -07 000000581 INF: Autofocus start
17-03-18 05:06:44.214 -07 000000581 INF: MeasureProfile start
17-03-18 05:06:44.214 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:44.224 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:44.224 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:44.224 -07 000000581 INF: MeasureProfile done
17-03-18 05:06:44.224 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:06:44.224 -07 000000581 INF: Autofocus finished
17-03-18 05:06:44.424 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:44.424 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:06:44.424 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175423819551019. ----------
17-03-18 05:06:44.424 -07 000000610 INF: Cycle	133	Tile	9	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:44.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36833, sync = True, waitForSettling = True)
17-03-18 05:06:44.434 -07 000000610 INF: Z Motor: Moving to -0.168611 mm, started at -0.175424 mm, distance = 6.81 um
17-03-18 05:06:44.434 -07 000000610 INF: FPGA: Xmit ZDACW 36833\n [Z Motor]
17-03-18 05:06:44.434 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:06:44.444 -07 000000610 INF: FPGA: 'ZDACW 36833' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:44.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:44.444 -07 000000579 INF: FPGA: Recv ZDACR 36833
17-03-18 05:06:44.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35534
17-03-18 05:06:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.614 -07 000000480 INF: FPGA: Recv ZSGSRD 35540
17-03-18 05:06:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.624 -07 000000502 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:06:44.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.634 -07 000000581 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:06:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.644 -07 000000447 INF: FPGA: Recv ZSGSRD 35535
17-03-18 05:06:44.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.654 -07 000000512 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:06:44.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35542
17-03-18 05:06:44.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.674 -07 000000606 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:06:44.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.684 -07 000000625 INF: FPGA: Recv ZSGSRD 35535
17-03-18 05:06:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:44.694 -07 000000467 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:06:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:44.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 31262
17-03-18 05:06:44.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:44.714 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.4 V.
17-03-18 05:06:44.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35536 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35536 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35531 (-167.7 uncal um), Max = 35542 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:06:44.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35536, posNoise = 6, negNoise = 5
17-03-18 05:06:44.714 -07 000000610 INF: Z Motor: After move to -0.168611, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:44.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:06:44.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:44.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:44.714 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:44.714 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:44.714 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:44.714 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:44.714 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:44.714 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:44.714 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:44.714 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:44.714 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:44.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:44.724 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:44.724 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:44.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:06:44.724 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:44.734 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:06:44.734 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:06:44.734 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:06:44.734 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:06:44.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37010 150\n [Camera]
17-03-18 05:06:44.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:45.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:45.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:45.364 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:45.364 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:45.364 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:06:45.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:45.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:45.374 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:45.374 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:45.374 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:06:45.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37010 817
17-03-18 05:06:45.704 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:45.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:06:45.744 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:06:45.744 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:45.744 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:06:45.744 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:06:45.744 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:45.754 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:45.754 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:45.754 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:06:45.764 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:06:45.914 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:45.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:45.914 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:45.914 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:45.914 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:06:45.924 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:45.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:45.924 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:45.924 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:45.924 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:06:46.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:06:46.104 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:46.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37010 150' command took 2 ms to send, 1369 ms to get response, and 1375 ms overall
17-03-18 05:06:46.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:46.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168614154680752. ------
17-03-18 05:06:46.114 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:46.114 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17542 mm
17-03-18 05:06:46.114 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:46.114 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:06:46.114 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:06:46.114 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:46.114 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38321, sync = True, waitForSettling = False)
17-03-18 05:06:46.114 -07 000000606 INF: Z Motor: Moving to -0.175422 mm, started at -0.168614 mm, distance = -6.81 um
17-03-18 05:06:46.124 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:06:46.124 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:46.124 -07 000000626 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:06:46.134 -07 000000606 INF: FPGA: Xmit ZDACW 38321\n [Z Motor]
17-03-18 05:06:46.134 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:06:46.134 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:46.134 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:46.134 -07 000000569 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:06:46.134 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:06:46.144 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:46.144 -07 000000606 INF: FPGA: 'ZDACW 38321' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:06:46.154 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:46.274 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:46.274 -07 000000382 INF: FPGA: Recv ZDACR 38321
17-03-18 05:06:46.284 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 05:06:46.284 -07 000000606 INF: Z Motor: MoveAbsStepped took 161 ms (did NOT wait for settling yet))
17-03-18 05:06:46.314 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:06:46.314 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:06:46.314 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:46.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:06:46.314 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:06:46.314 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:46.324 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:46.324 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:06:46.324 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:06:46.324 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:06:46.344 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:46.344 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:06:46.634 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:06:46.634 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 111 ms to send, 369 ms to get response, and 508 ms overall
17-03-18 05:06:46.694 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:46.694 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:06:46.704 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:46.704 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:46.704 -07 000000569 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:06:46.704 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 508 ms, distance = 0.844 mm, average velocity = 1.661 mm/sec
17-03-18 05:06:46.734 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:46.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:47.654 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:47.654 -07 000000480 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:06:47.664 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:47.664 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:47.694 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:47.694 -07 000000569 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:47.694 -07 000000569 INF: Y Motor: Moved to 67.3711 after 1574 ms (table move)
17-03-18 05:06:47.694 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175422 mm (DAC = 38321)
17-03-18 05:06:47.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.694 -07 000000606 INF: FPGA: Recv ZSGSRD 36595
17-03-18 05:06:47.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:06:47.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.704 -07 000000455 INF: FPGA: Recv ZSGSRD 36595
17-03-18 05:06:47.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.714 -07 000000447 INF: FPGA: Recv ZSGSRD 36588
17-03-18 05:06:47.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.724 -07 000000618 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:06:47.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.734 -07 000000461 INF: FPGA: Recv ZSGSRD 36600
17-03-18 05:06:47.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.744 -07 000000467 INF: FPGA: Recv ZSGSRD 36602
17-03-18 05:06:47.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.754 -07 000000626 INF: FPGA: Recv ZSGSRD 36602
17-03-18 05:06:47.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.764 -07 000000502 INF: FPGA: Recv ZSGSRD 36594
17-03-18 05:06:47.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.774 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.774 -07 000000625 INF: FPGA: Recv ZSGSRD 36595
17-03-18 05:06:47.784 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.784 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:47.784 -07 000000474 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:06:47.794 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.794 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:47.794 -07 000000467 INF: FPGA: Recv ZPIEZORD 32704
17-03-18 05:06:47.804 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:47.804 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.6 V.
17-03-18 05:06:47.804 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36595 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36588 (-174.5 uncal um), Max = 36602 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:06:47.804 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 6, negNoise = 8
17-03-18 05:06:47.804 -07 000000512 INF: Z Motor: After move to -0.175422, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:47.804 -07 000000512 INF: Z Motor: Settle wait time = 1575 ms, measure time = 107 ms (allowed 150 ms), total time = 1682 ms
17-03-18 05:06:47.804 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:47.854 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:06:47.854 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:47.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:47.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:47.854 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:47.854 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:47.854 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:47.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:47.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:47.854 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:47.864 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:47.864 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:47.874 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:06:47.874 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:06:47.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:47.924 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:48.224 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:48.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:48.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:48.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:06:48.264 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:48.264 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:48.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:06:48.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:06:48.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:48.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:06:48.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:06:48.364 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:48.364 -07 000000474 INF: Autofocus start
17-03-18 05:06:48.364 -07 000000474 INF: MeasureProfile start
17-03-18 05:06:48.364 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:48.374 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:48.374 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:48.384 -07 000000474 INF: MeasureProfile done
17-03-18 05:06:48.384 -07 000000474 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:06:48.384 -07 000000474 INF: Autofocus finished
17-03-18 05:06:48.574 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:48.574 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:48.574 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175423819551019. ----------
17-03-18 05:06:48.584 -07 000000610 INF: Cycle	133	Tile	10	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:48.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36801, sync = True, waitForSettling = True)
17-03-18 05:06:48.584 -07 000000610 INF: Z Motor: Moving to -0.168464 mm, started at -0.175424 mm, distance = 6.96 um
17-03-18 05:06:48.584 -07 000000610 INF: FPGA: Xmit ZDACW 36801\n [Z Motor]
17-03-18 05:06:48.584 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:06:48.594 -07 000000610 INF: FPGA: 'ZDACW 36801' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:06:48.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:48.594 -07 000000474 INF: FPGA: Recv ZDACR 36801
17-03-18 05:06:48.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:48.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.754 -07 000000382 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:06:48.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.764 -07 000000480 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:06:48.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.774 -07 000000479 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:06:48.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.784 -07 000000608 INF: FPGA: Recv ZSGSRD 35508
17-03-18 05:06:48.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.794 -07 000000569 INF: FPGA: Recv ZSGSRD 35512
17-03-18 05:06:48.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.814 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.978563,
17-03-18 05:06:48.814 -07 000000512 INF: FPGA: Recv ZSGSRD 35512
17-03-18 05:06:48.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:48.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.844 -07 000000581 INF: FPGA: Recv ZSGSRD 35517
17-03-18 05:06:48.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.854 -07 000000569 INF: FPGA: Recv ZSGSRD 35515
17-03-18 05:06:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.884 -07 000000626 INF: FPGA: Recv ZSGSRD 35512
17-03-18 05:06:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:06:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:48.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35514
17-03-18 05:06:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:48.904 -07 000000424 INF: FPGA: Recv ZPIEZORD 31289
17-03-18 05:06:48.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:48.914 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.615 V. Piezo Error = -9.3 V.
17-03-18 05:06:48.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35514 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35514 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35508 (-167.6 uncal um), Max = 35518 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:06:48.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35514, posNoise = 4, negNoise = 6
17-03-18 05:06:48.914 -07 000000610 INF: Z Motor: After move to -0.168464, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:48.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 05:06:48.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:48.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:48.914 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:48.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:48.914 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:48.914 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:48.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:48.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:06:48.914 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:48.914 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:48.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:06:48.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:48.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:06:48.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:48.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:48.924 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:48.924 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:06:48.924 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:06:48.934 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:06:48.934 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:06:48.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36978 150\n [Camera]
17-03-18 05:06:49.134 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:06:49.564 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:49.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:49.564 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:49.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:49.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:49.564 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:49.574 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:49.574 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:06:49.574 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:49.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:06:49.754 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36978 817
17-03-18 05:06:49.904 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:49.944 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:06:49.944 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:06:49.944 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:49.944 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:06:49.944 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:06:49.944 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:49.954 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:49.954 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:06:49.954 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:49.964 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:06:50.114 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:50.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:50.114 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:50.114 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:50.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:50.114 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:50.124 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:50.124 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:06:50.124 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:50.124 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:06:50.304 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:06:50.304 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:50.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36978 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:06:50.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:50.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168472822013634. ------
17-03-18 05:06:50.434 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17483 mm
17-03-18 05:06:50.434 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:50.434 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:50.434 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:50.434 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:06:50.434 -07 000000581 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:06:50.434 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38192, sync = True, waitForSettling = False)
17-03-18 05:06:50.434 -07 000000625 INF: Z Motor: Moving to -0.174832 mm, started at -0.168473 mm, distance = -6.36 um
17-03-18 05:06:50.444 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:06:50.444 -07 000000625 INF: FPGA: Xmit ZDACW 38192\n [Z Motor]
17-03-18 05:06:50.444 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:06:50.454 -07 000000625 INF: FPGA: 'ZDACW 38192' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:06:50.454 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:50.454 -07 000000467 INF: FPGA: Recv ZDACR 38192
17-03-18 05:06:50.464 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:50.464 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:50.464 -07 000000625 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 05:06:50.464 -07 000000579 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:06:50.474 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:50.474 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:06:50.474 -07 000000581 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:50.474 -07 000000581 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:50.474 -07 000000581 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:06:50.484 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:50.524 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:06:50.524 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:06:50.524 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:50.524 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:06:50.524 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:06:50.524 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:50.524 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:50.524 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:06:50.524 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:50.534 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:06:50.674 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:50.674 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:06:50.854 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:06:50.854 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:06:50.904 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:50.914 -07 000000461 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:06:50.914 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:06:50.914 -07 000000581 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:50.914 -07 000000581 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:06:50.914 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.842 mm, average velocity = 2.191 mm/sec
17-03-18 05:06:51.734 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:51.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:51.864 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:51.864 -07 000000467 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:06:51.874 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:51.874 -07 000000581 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:51.904 -07 000000581 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:51.904 -07 000000581 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:51.904 -07 000000581 INF: Y Motor: Moved to 68.2041 after 1462 ms (table move)
17-03-18 05:06:51.904 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174832 mm (DAC = 38192)
17-03-18 05:06:51.904 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.904 -07 000000479 INF: FPGA: Recv ZSGSRD 36518
17-03-18 05:06:51.914 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:06:51.914 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.914 -07 000000569 INF: FPGA: Recv ZSGSRD 36506
17-03-18 05:06:51.924 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.924 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.924 -07 000000618 INF: FPGA: Recv ZSGSRD 36506
17-03-18 05:06:51.934 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.934 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.934 -07 000000382 INF: FPGA: Recv ZSGSRD 36498
17-03-18 05:06:51.944 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.944 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.944 -07 000000467 INF: FPGA: Recv ZSGSRD 36508
17-03-18 05:06:51.954 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.954 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.954 -07 000000579 INF: FPGA: Recv ZSGSRD 36503
17-03-18 05:06:51.964 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.964 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.964 -07 000000569 INF: FPGA: Recv ZSGSRD 36510
17-03-18 05:06:51.974 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.974 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.974 -07 000000455 INF: FPGA: Recv ZSGSRD 36513
17-03-18 05:06:51.984 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.984 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.984 -07 000000474 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:06:51.994 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:51.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:51.994 -07 000000467 INF: FPGA: Recv ZSGSRD 36509
17-03-18 05:06:52.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.004 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:52.004 -07 000000625 INF: FPGA: Recv ZPIEZORD 32573
17-03-18 05:06:52.014 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.014 -07 000000502 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.7 V.
17-03-18 05:06:52.014 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36508 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36507 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36498 (-173.9 uncal um), Max = 36518 (-174.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:06:52.014 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36508, posNoise = 10, negNoise = 10
17-03-18 05:06:52.014 -07 000000502 INF: Z Motor: After move to -0.174832, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:52.014 -07 000000502 INF: Z Motor: Settle wait time = 1466 ms, measure time = 107 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:06:52.014 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:52.064 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:06:52.064 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:52.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:52.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:52.064 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:52.064 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:52.064 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:52.064 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:52.064 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:06:52.064 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:52.064 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:52.064 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:52.074 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:06:52.074 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:06:52.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:52.124 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:52.424 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:52.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:52.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:52.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:06:52.464 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:52.464 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:52.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:06:52.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:06:52.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:52.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:52.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:06:52.564 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:52.564 -07 000000424 INF: Autofocus start
17-03-18 05:06:52.564 -07 000000424 INF: MeasureProfile start
17-03-18 05:06:52.564 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:52.574 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:52.574 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:52.574 -07 000000424 INF: MeasureProfile done
17-03-18 05:06:52.574 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:06:52.574 -07 000000424 INF: Autofocus finished
17-03-18 05:06:52.774 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:52.774 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:52.774 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174858488882544. ----------
17-03-18 05:06:52.774 -07 000000610 INF: Cycle	133	Tile	11	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:52.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36689, sync = True, waitForSettling = True)
17-03-18 05:06:52.784 -07 000000610 INF: Z Motor: Moving to -0.167951 mm, started at -0.174858 mm, distance = 6.91 um
17-03-18 05:06:52.784 -07 000000610 INF: FPGA: Xmit ZDACW 36689\n [Z Motor]
17-03-18 05:06:52.784 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:06:52.794 -07 000000610 INF: FPGA: 'ZDACW 36689' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:52.794 -07 000000606 INF: FPGA: Recv ZDACR 36689
17-03-18 05:06:52.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:52.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:52.954 -07 000000467 INF: FPGA: Recv ZSGSRD 35436
17-03-18 05:06:52.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:52.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:52.964 -07 000000626 INF: FPGA: Recv ZSGSRD 35439
17-03-18 05:06:52.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:52.974 -07 000000606 INF: FPGA: Recv ZSGSRD 35428
17-03-18 05:06:52.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:52.984 -07 000000618 INF: FPGA: Recv ZSGSRD 35435
17-03-18 05:06:52.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:52.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:52.994 -07 000000502 INF: FPGA: Recv ZSGSRD 35438
17-03-18 05:06:53.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:53.004 -07 000000625 INF: FPGA: Recv ZSGSRD 35431
17-03-18 05:06:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:53.014 -07 000000512 INF: FPGA: Recv ZSGSRD 35432
17-03-18 05:06:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:53.024 -07 000000608 INF: FPGA: Recv ZSGSRD 35431
17-03-18 05:06:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:53.034 -07 000000424 INF: FPGA: Recv ZSGSRD 35436
17-03-18 05:06:53.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:53.044 -07 000000382 INF: FPGA: Recv ZSGSRD 35437
17-03-18 05:06:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:53.054 -07 000000467 INF: FPGA: Recv ZPIEZORD 31114
17-03-18 05:06:53.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:53.064 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.5 V.
17-03-18 05:06:53.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35434 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35436 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35428 (-167.1 uncal um), Max = 35439 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:06:53.064 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35434, posNoise = 5, negNoise = 6
17-03-18 05:06:53.064 -07 000000610 INF: Z Motor: After move to -0.167951, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:53.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:06:53.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:53.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:53.064 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:53.064 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:53.064 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:53.064 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:53.064 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:53.064 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:53.064 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:53.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:53.064 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:53.064 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:53.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:53.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:53.074 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:06:53.074 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:53.084 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:06:53.084 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:06:53.084 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:06:53.084 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:06:53.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36866 150\n [Camera]
17-03-18 05:06:53.284 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:53.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:53.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:53.724 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:53.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:53.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:53.724 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:53.724 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:53.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:06:53.724 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:53.724 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:06:53.914 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36866 817
17-03-18 05:06:54.064 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:54.114 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:06:54.114 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:06:54.114 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:06:54.114 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:54.114 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:06:54.114 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:54.114 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:54.114 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:54.114 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:06:54.124 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:06:54.204 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.99219,
17-03-18 05:06:54.274 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:54.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:54.274 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:54.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:54.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:54.274 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:54.284 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:54.284 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:06:54.284 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:54.284 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:06:54.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:54.464 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:54.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36866 150' command took 2 ms to send, 1364 ms to get response, and 1375 ms overall
17-03-18 05:06:54.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:54.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.167958885042293. ------
17-03-18 05:06:54.464 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:54.464 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17459 mm
17-03-18 05:06:54.464 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:54.474 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:54.474 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:06:54.474 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38139, sync = True, waitForSettling = False)
17-03-18 05:06:54.474 -07 000000480 INF: Z Motor: Moving to -0.174589 mm, started at -0.167959 mm, distance = -6.63 um
17-03-18 05:06:54.474 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:54.474 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:06:54.474 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:06:54.484 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:54.484 -07 000000502 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:06:54.494 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:06:54.494 -07 000000608 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:54.494 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:54.494 -07 000000608 INF: Y Motor: Moving 1342 steps-17
17-03-18 05:06:54.494 -07 000000480 INF: FPGA: Xmit ZDACW 38139\n [Z Motor]
17-03-18 05:06:54.494 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:06:54.504 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:54.504 -07 000000480 INF: FPGA: 'ZDACW 38139' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:06:54.514 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:54.514 -07 000000474 INF: FPGA: Recv ZDACR 38139
17-03-18 05:06:54.524 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:54.524 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:06:54.674 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:06:54.674 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:06:54.674 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:54.674 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:06:54.674 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:06:54.674 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:54.674 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:54.674 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:54.674 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:06:54.674 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:54.674 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:06:54.684 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:06:54.874 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:06:54.874 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:06:54.924 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:54.934 -07 000000579 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:06:54.934 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 05:06:54.934 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:54.934 -07 000000608 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:06:54.934 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-18 05:06:55.884 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:55.884 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:06:55.894 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:55.894 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:55.924 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:06:55.924 -07 000000608 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:06:55.924 -07 000000608 INF: Y Motor: Moved to 69.0264 after 1448 ms (table move)
17-03-18 05:06:55.924 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174589 mm (DAC = 38139)
17-03-18 05:06:55.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.924 -07 000000606 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:06:55.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:55.934 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.934 -07 000000480 INF: FPGA: Recv ZSGSRD 36471
17-03-18 05:06:55.944 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:55.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.944 -07 000000382 INF: FPGA: Recv ZSGSRD 36475
17-03-18 05:06:55.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:55.954 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.954 -07 000000447 INF: FPGA: Recv ZSGSRD 36457
17-03-18 05:06:55.964 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:55.964 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.964 -07 000000474 INF: FPGA: Recv ZSGSRD 36463
17-03-18 05:06:55.974 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:55.974 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.974 -07 000000606 INF: FPGA: Recv ZSGSRD 36464
17-03-18 05:06:55.984 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:55.984 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.984 -07 000000467 INF: FPGA: Recv ZSGSRD 36467
17-03-18 05:06:55.994 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:55.994 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:55.994 -07 000000382 INF: FPGA: Recv ZSGSRD 36470
17-03-18 05:06:56.004 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:56.004 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:56.004 -07 000000502 INF: FPGA: Recv ZSGSRD 36467
17-03-18 05:06:56.014 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:56.014 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:56.014 -07 000000424 INF: FPGA: Recv ZSGSRD 36474
17-03-18 05:06:56.024 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:56.024 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:56.024 -07 000000606 INF: FPGA: Recv ZPIEZORD 32536
17-03-18 05:06:56.034 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:56.034 -07 000000618 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.820 V. Piezo Error = -8.7 V.
17-03-18 05:06:56.034 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36468 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36468 (-173.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36457 (-173.6 uncal um), Max = 36475 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:06:56.034 -07 000000618 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36468, posNoise = 7, negNoise = 11
17-03-18 05:06:56.034 -07 000000618 INF: Z Motor: After move to -0.174589, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:56.034 -07 000000618 INF: Z Motor: Settle wait time = 1452 ms, measure time = 106 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:06:56.034 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:06:56.084 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:06:56.084 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:06:56.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:56.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:56.094 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:06:56.104 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:56.104 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:56.104 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:56.104 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:56.104 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:06:56.104 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:06:56.104 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:06:56.114 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:06:56.114 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:06:56.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:06:56.164 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:06:56.464 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:06:56.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:06:56.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:06:56.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:06:56.504 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:06:56.504 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:06:56.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 05:06:56.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:06:56.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:56.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:06:56.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:06:56.604 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:56.604 -07 000000512 INF: Autofocus start
17-03-18 05:06:56.604 -07 000000512 INF: MeasureProfile start
17-03-18 05:06:56.604 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:56.614 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:06:56.614 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:06:56.614 -07 000000512 INF: MeasureProfile done
17-03-18 05:06:56.614 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:06:56.614 -07 000000512 INF: Autofocus finished
17-03-18 05:06:56.734 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:06:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:06:56.814 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:06:56.814 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:06:56.824 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174601520396874. ----------
17-03-18 05:06:56.824 -07 000000610 INF: Cycle	133	Tile	12	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:06:56.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36654, sync = True, waitForSettling = True)
17-03-18 05:06:56.824 -07 000000610 INF: Z Motor: Moving to -0.167791 mm, started at -0.174602 mm, distance = 6.81 um
17-03-18 05:06:56.824 -07 000000610 INF: FPGA: Xmit ZDACW 36654\n [Z Motor]
17-03-18 05:06:56.824 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:06:56.834 -07 000000610 INF: FPGA: 'ZDACW 36654' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:06:56.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:56.834 -07 000000480 INF: FPGA: Recv ZDACR 36654
17-03-18 05:06:56.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:56.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:06:56.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:56.994 -07 000000382 INF: FPGA: Recv ZSGSRD 35411
17-03-18 05:06:57.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:06:57.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.004 -07 000000626 INF: FPGA: Recv ZSGSRD 35410
17-03-18 05:06:57.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.014 -07 000000606 INF: FPGA: Recv ZSGSRD 35406
17-03-18 05:06:57.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.024 -07 000000501 INF: FPGA: Recv ZSGSRD 35407
17-03-18 05:06:57.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.034 -07 000000618 INF: FPGA: Recv ZSGSRD 35410
17-03-18 05:06:57.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.044 -07 000000447 INF: FPGA: Recv ZSGSRD 35414
17-03-18 05:06:57.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.054 -07 000000512 INF: FPGA: Recv ZSGSRD 35406
17-03-18 05:06:57.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.064 -07 000000474 INF: FPGA: Recv ZSGSRD 35407
17-03-18 05:06:57.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.074 -07 000000479 INF: FPGA: Recv ZSGSRD 35407
17-03-18 05:06:57.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:06:57.084 -07 000000581 INF: FPGA: Recv ZSGSRD 35410
17-03-18 05:06:57.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:06:57.094 -07 000000625 INF: FPGA: Recv ZPIEZORD 31094
17-03-18 05:06:57.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:57.104 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.5 V.
17-03-18 05:06:57.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35409 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35408 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35406 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:06:57.104 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35409, posNoise = 5, negNoise = 3
17-03-18 05:06:57.104 -07 000000610 INF: Z Motor: After move to -0.167791, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:06:57.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:06:57.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:06:57.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:06:57.104 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:06:57.104 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:06:57.104 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:06:57.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:06:57.104 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:06:57.104 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:06:57.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:06:57.104 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:06:57.104 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:06:57.104 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:06:57.114 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:06:57.114 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:06:57.114 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:06:57.114 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:06:57.124 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:06:57.124 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:06:57.124 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:06:57.124 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:06:57.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36831 150\n [Camera]
17-03-18 05:06:57.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:06:57.754 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:06:57.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:06:57.754 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:57.754 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:57.754 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:06:57.754 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:06:57.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:06:57.754 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:57.754 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:57.764 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:06:57.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36831 817
17-03-18 05:06:58.094 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:06:58.144 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:06:58.144 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:06:58.144 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:58.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:06:58.144 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:06:58.144 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:58.154 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:58.154 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:06:58.154 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:06:58.154 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:06:58.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:06:58.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:06:58.304 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:06:58.304 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:06:58.304 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:06:58.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:06:58.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:06:58.314 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:06:58.314 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:06:58.314 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:06:58.494 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:06:58.494 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:06:58.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36831 150' command took 2 ms to send, 1368 ms to get response, and 1374 ms overall
17-03-18 05:06:58.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:06:58.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167798279738749. ------
17-03-18 05:06:58.504 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:06:58.504 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17419 mm
17-03-18 05:06:58.504 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:06:58.614 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:06:58.614 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-18 05:06:58.614 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:06:58.624 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:06:58.624 -07 000000467 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:06:58.624 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:58.624 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38052, sync = True, waitForSettling = False)
17-03-18 05:06:58.624 -07 000000606 INF: Z Motor: Moving to -0.174191 mm, started at -0.167798 mm, distance = -6.39 um
17-03-18 05:06:58.624 -07 000000625 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:06:58.634 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:06:58.634 -07 000000467 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:58.634 -07 000000467 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:06:58.634 -07 000000467 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:06:58.634 -07 000000606 INF: FPGA: Xmit ZDACW 38052\n [Z Motor]
17-03-18 05:06:58.634 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:06:58.644 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:06:58.644 -07 000000606 INF: FPGA: 'ZDACW 38052' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:06:58.654 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:06:58.654 -07 000000461 INF: FPGA: Recv ZDACR 38052
17-03-18 05:06:58.664 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:06:58.664 -07 000000606 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:06:58.694 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:06:58.694 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:06:58.694 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:58.704 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:06:58.704 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:06:58.704 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:06:58.704 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:06:58.704 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:06:58.704 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:06:58.714 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:06:58.824 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:06:58.824 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-18 05:06:59.014 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:06:59.014 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:06:59.074 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:06:59.074 -07 000000382 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:06:59.084 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:06:59.084 -07 000000467 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:06:59.084 -07 000000467 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:06:59.084 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.187 mm/sec
17-03-18 05:06:59.564 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.053471,
17-03-18 05:07:00.034 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:00.034 -07 000000474 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:07:00.044 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:00.044 -07 000000467 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:00.074 -07 000000467 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:00.074 -07 000000467 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:00.074 -07 000000467 INF: Y Motor: Moved to 69.8623 after 1449 ms (table move)
17-03-18 05:07:00.074 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174191 mm (DAC = 38052)
17-03-18 05:07:00.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.074 -07 000000579 INF: FPGA: Recv ZSGSRD 36415
17-03-18 05:07:00.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:00.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36406
17-03-18 05:07:00.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.094 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.094 -07 000000618 INF: FPGA: Recv ZSGSRD 36404
17-03-18 05:07:00.104 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.104 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.104 -07 000000581 INF: FPGA: Recv ZSGSRD 36399
17-03-18 05:07:00.114 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.114 -07 000000625 INF: FPGA: Recv ZSGSRD 36403
17-03-18 05:07:00.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.124 -07 000000579 INF: FPGA: Recv ZSGSRD 36404
17-03-18 05:07:00.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.134 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.134 -07 000000461 INF: FPGA: Recv ZSGSRD 36398
17-03-18 05:07:00.144 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.144 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.144 -07 000000618 INF: FPGA: Recv ZSGSRD 36412
17-03-18 05:07:00.154 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.154 -07 000000455 INF: FPGA: Recv ZSGSRD 36412
17-03-18 05:07:00.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:00.164 -07 000000467 INF: FPGA: Recv ZSGSRD 36410
17-03-18 05:07:00.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:00.174 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:00.174 -07 000000626 INF: FPGA: Recv ZPIEZORD 32421
17-03-18 05:07:00.184 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.184 -07 000000501 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.806 V. Piezo Error = -8.8 V.
17-03-18 05:07:00.184 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36406 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36405 (-173.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36398 (-173.3 uncal um), Max = 36415 (-173.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:07:00.184 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36406, posNoise = 9, negNoise = 8
17-03-18 05:07:00.184 -07 000000501 INF: Z Motor: After move to -0.174191, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:00.184 -07 000000501 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 05:07:00.184 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:00.234 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 05:07:00.234 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:00.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:00.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:00.234 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:00.234 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:00.234 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:00.234 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:00.234 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:00.234 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:00.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:00.244 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:00.244 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:07:00.244 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:07:00.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:00.294 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:00.594 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:00.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:00.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:00.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:00.634 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:00.634 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:00.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:07:00.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:07:00.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:00.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:00.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:07:00.734 -07 000000618 INF: Autofocus start
17-03-18 05:07:00.734 -07 000000618 INF: MeasureProfile start
17-03-18 05:07:00.734 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:00.734 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:00.744 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:00.744 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:00.744 -07 000000618 INF: MeasureProfile done
17-03-18 05:07:00.744 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:07:00.744 -07 000000618 INF: Autofocus finished
17-03-18 05:07:00.944 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:00.944 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:00.944 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174203219244084. ----------
17-03-18 05:07:00.944 -07 000000610 INF: Cycle	133	Tile	13	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:00.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36585, sync = True, waitForSettling = True)
17-03-18 05:07:00.954 -07 000000610 INF: Z Motor: Moving to -0.167475 mm, started at -0.174203 mm, distance = 6.73 um
17-03-18 05:07:00.954 -07 000000610 INF: FPGA: Xmit ZDACW 36585\n [Z Motor]
17-03-18 05:07:00.954 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:07:00.964 -07 000000610 INF: FPGA: 'ZDACW 36585' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:00.964 -07 000000447 INF: FPGA: Recv ZDACR 36585
17-03-18 05:07:00.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:00.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:01.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.124 -07 000000455 INF: FPGA: Recv ZSGSRD 35361
17-03-18 05:07:01.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.134 -07 000000474 INF: FPGA: Recv ZSGSRD 35359
17-03-18 05:07:01.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35359
17-03-18 05:07:01.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.154 -07 000000382 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:07:01.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.164 -07 000000625 INF: FPGA: Recv ZSGSRD 35354
17-03-18 05:07:01.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.174 -07 000000502 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:07:01.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.184 -07 000000474 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:07:01.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.194 -07 000000626 INF: FPGA: Recv ZSGSRD 35359
17-03-18 05:07:01.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.204 -07 000000579 INF: FPGA: Recv ZSGSRD 35363
17-03-18 05:07:01.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:01.214 -07 000000447 INF: FPGA: Recv ZSGSRD 35362
17-03-18 05:07:01.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:01.224 -07 000000502 INF: FPGA: Recv ZPIEZORD 30999
17-03-18 05:07:01.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:01.234 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.6 V.
17-03-18 05:07:01.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35360 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35354 (-166.6 uncal um), Max = 35363 (-166.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:07:01.234 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35360, posNoise = 3, negNoise = 6
17-03-18 05:07:01.234 -07 000000610 INF: Z Motor: After move to -0.167475, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:01.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:07:01.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:01.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:01.234 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:01.234 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:01.234 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:01.234 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:01.234 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:01.234 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:01.234 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:01.234 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:01.234 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:07:01.234 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:01.234 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:01.234 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:01.244 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:07:01.244 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:01.244 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:07:01.244 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:01.254 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:07:01.254 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:07:01.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36761 150\n [Camera]
17-03-18 05:07:01.454 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:01.734 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:01.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:01.884 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:01.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:01.884 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:01.884 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:01.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:01.884 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:01.894 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:01.894 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:01.894 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:01.894 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:02.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36761 817
17-03-18 05:07:02.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:02.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:07:02.264 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:07:02.264 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:02.264 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:07:02.264 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:07:02.264 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:02.274 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:02.274 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:02.274 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:07:02.274 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:07:02.434 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1177
17-03-18 05:07:02.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1177
17-03-18 05:07:02.444 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:02.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1177
17-03-18 05:07:02.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1177
17-03-18 05:07:02.444 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:02.444 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:02.444 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:07:02.444 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:02.444 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:07:02.624 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:02.624 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:02.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36761 150' command took 2 ms to send, 1367 ms to get response, and 1374 ms overall
17-03-18 05:07:02.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:07:02.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167483493343802. ------
17-03-18 05:07:02.634 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:02.634 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17391 mm
17-03-18 05:07:02.634 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:02.634 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:07:02.634 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:07:02.634 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37990, sync = True, waitForSettling = False)
17-03-18 05:07:02.634 -07 000000581 INF: Z Motor: Moving to -0.173907 mm, started at -0.167483 mm, distance = -6.42 um
17-03-18 05:07:02.634 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:02.644 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:02.644 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:02.644 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:07:02.654 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:07:02.654 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:02.654 -07 000000581 INF: FPGA: Xmit ZDACW 37990\n [Z Motor]
17-03-18 05:07:02.654 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:07:02.774 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:02.774 -07 000000581 INF: FPGA: 'ZDACW 37990' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 05:07:02.774 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:02.774 -07 000000424 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:07:02.784 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:02.784 -07 000000626 INF: FPGA: Recv ZDACR 37990
17-03-18 05:07:02.794 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:02.794 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:07:02.794 -07 000000581 INF: Z Motor: MoveAbsStepped took 154 ms (did NOT wait for settling yet))
17-03-18 05:07:02.844 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:07:02.844 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:07:02.844 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:02.844 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:07:02.844 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:07:02.844 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:02.854 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:02.854 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:07:02.854 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:02.864 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:07:02.974 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:02.974 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 337 ms overall
17-03-18 05:07:03.164 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:07:03.164 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 05:07:03.214 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:03.224 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:07:03.224 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:07:03.224 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:03.224 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:07:03.224 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.144 mm/sec
17-03-18 05:07:04.174 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:04.174 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:07:04.184 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:04.184 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:04.214 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:04.214 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:04.214 -07 000000424 INF: Y Motor: Moved to 70.6880 after 1577 ms (table move)
17-03-18 05:07:04.214 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173907 mm (DAC = 37990)
17-03-18 05:07:04.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.224 -07 000000512 INF: FPGA: Recv ZSGSRD 36364
17-03-18 05:07:04.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:07:04.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.224 -07 000000618 INF: FPGA: Recv ZSGSRD 36366
17-03-18 05:07:04.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:04.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.234 -07 000000608 INF: FPGA: Recv ZSGSRD 36352
17-03-18 05:07:04.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.244 -07 000000502 INF: FPGA: Recv ZSGSRD 36358
17-03-18 05:07:04.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.254 -07 000000579 INF: FPGA: Recv ZSGSRD 36351
17-03-18 05:07:04.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.264 -07 000000467 INF: FPGA: Recv ZSGSRD 36361
17-03-18 05:07:04.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.274 -07 000000569 INF: FPGA: Recv ZSGSRD 36366
17-03-18 05:07:04.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.284 -07 000000581 INF: FPGA: Recv ZSGSRD 36359
17-03-18 05:07:04.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.294 -07 000000424 INF: FPGA: Recv ZSGSRD 36363
17-03-18 05:07:04.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:04.304 -07 000000626 INF: FPGA: Recv ZSGSRD 36367
17-03-18 05:07:04.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.314 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:04.314 -07 000000479 INF: FPGA: Recv ZPIEZORD 32395
17-03-18 05:07:04.324 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:04.324 -07 000000480 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.797 V. Piezo Error = -8.8 V.
17-03-18 05:07:04.324 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36361 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36362 (-173.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36351 (-173.0 uncal um), Max = 36367 (-173.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:07:04.324 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36361, posNoise = 6, negNoise = 10
17-03-18 05:07:04.324 -07 000000480 INF: Z Motor: After move to -0.173907, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:04.324 -07 000000480 INF: Z Motor: Settle wait time = 1582 ms, measure time = 102 ms (allowed 150 ms), total time = 1684 ms
17-03-18 05:07:04.324 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:04.374 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 05:07:04.374 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:04.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:04.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:04.374 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:04.374 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:04.374 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:04.384 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:04.384 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:04.384 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:04.384 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:04.384 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:04.394 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:07:04.394 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:07:04.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:04.454 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:04.754 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:04.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:04.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:04.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:04.794 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:04.794 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:04.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 401 ms overall
17-03-18 05:07:04.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:07:04.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:04.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:07:04.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:07:04.894 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:04.894 -07 000000569 INF: Autofocus start
17-03-18 05:07:04.894 -07 000000569 INF: MeasureProfile start
17-03-18 05:07:04.894 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:04.904 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:04.904 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:04.904 -07 000000569 INF: MeasureProfile done
17-03-18 05:07:04.904 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:07:04.904 -07 000000569 INF: Autofocus finished
17-03-18 05:07:04.924 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.038479,
17-03-18 05:07:05.104 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:05.104 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:05.104 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173914129697705. ----------
17-03-18 05:07:05.104 -07 000000610 INF: Cycle	133	Tile	14	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:05.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36487, sync = True, waitForSettling = True)
17-03-18 05:07:05.114 -07 000000610 INF: Z Motor: Moving to -0.167027 mm, started at -0.173914 mm, distance = 6.89 um
17-03-18 05:07:05.114 -07 000000610 INF: FPGA: Xmit ZDACW 36487\n [Z Motor]
17-03-18 05:07:05.114 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:07:05.124 -07 000000610 INF: FPGA: 'ZDACW 36487' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:05.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:05.124 -07 000000606 INF: FPGA: Recv ZDACR 36487
17-03-18 05:07:05.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:05.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.284 -07 000000569 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:07:05.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:05.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.294 -07 000000581 INF: FPGA: Recv ZSGSRD 35295
17-03-18 05:07:05.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.304 -07 000000424 INF: FPGA: Recv ZSGSRD 35285
17-03-18 05:07:05.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.314 -07 000000625 INF: FPGA: Recv ZSGSRD 35285
17-03-18 05:07:05.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.324 -07 000000626 INF: FPGA: Recv ZSGSRD 35286
17-03-18 05:07:05.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.334 -07 000000502 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:07:05.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.344 -07 000000606 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:07:05.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.354 -07 000000608 INF: FPGA: Recv ZSGSRD 35284
17-03-18 05:07:05.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.364 -07 000000625 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:07:05.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:05.374 -07 000000626 INF: FPGA: Recv ZSGSRD 35291
17-03-18 05:07:05.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:05.384 -07 000000502 INF: FPGA: Recv ZPIEZORD 30953
17-03-18 05:07:05.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:05.394 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.6 V.
17-03-18 05:07:05.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35289 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35284 (-166.1 uncal um), Max = 35296 (-166.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:07:05.394 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35289, posNoise = 7, negNoise = 5
17-03-18 05:07:05.394 -07 000000610 INF: Z Motor: After move to -0.167027, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:05.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:07:05.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:05.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:05.394 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:05.394 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:05.394 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:05.394 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:05.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:05.394 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:05.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:07:05.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:05.394 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:05.394 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:05.404 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:05.404 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:05.404 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:05.404 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:05.414 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:07:05.414 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:07:05.414 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:07:05.414 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:05.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36663 150\n [Camera]
17-03-18 05:07:05.614 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:07:06.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:06.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:06.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:06.044 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:06.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:06.044 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:06.054 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:06.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:06.054 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:06.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:06.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36663 817
17-03-18 05:07:06.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:06.444 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:07:06.444 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:07:06.444 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:06.454 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:07:06.454 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:07:06.454 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:06.454 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:07:06.454 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:06.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:06.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:07:06.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:06.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:06.594 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:06.594 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:06.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:06.604 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:06.604 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:06.604 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:07:06.604 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:06.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:07:06.734 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:06.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:06.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:06.784 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:06.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36663 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-18 05:07:06.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:07:06.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167027374281737. ------
17-03-18 05:07:06.794 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:06.794 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17382 mm
17-03-18 05:07:06.794 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:06.794 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:07:06.794 -07 000000618 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:07:06.794 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37970, sync = True, waitForSettling = False)
17-03-18 05:07:06.794 -07 000000512 INF: Z Motor: Moving to -0.173816 mm, started at -0.167027 mm, distance = -6.79 um
17-03-18 05:07:06.804 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:06.804 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:06.804 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:06.804 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:07:06.814 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:06.814 -07 000000618 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:06.814 -07 000000618 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:06.814 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:07:06.814 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:06.824 -07 000000512 INF: FPGA: Xmit ZDACW 37970\n [Z Motor]
17-03-18 05:07:06.824 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:07:06.834 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:06.834 -07 000000512 INF: FPGA: 'ZDACW 37970' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:07:06.844 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:06.844 -07 000000625 INF: FPGA: Recv ZDACR 37970
17-03-18 05:07:06.854 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:07:06.854 -07 000000512 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:07:07.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:07:07.004 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:07:07.004 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:07.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:07:07.004 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:07:07.004 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:07.014 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:07.014 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:07:07.014 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:07.014 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:07.014 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:07:07.024 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 05:07:07.214 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:07:07.214 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 402 ms overall
17-03-18 05:07:07.264 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:07.264 -07 000000424 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:07:07.274 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:07.274 -07 000000618 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:07.274 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:07:07.274 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.845 mm, average velocity = 2.096 mm/sec
17-03-18 05:07:08.224 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:08.224 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:07:08.234 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.234 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:08.264 -07 000000618 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:08.264 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:07:08.264 -07 000000618 INF: Y Motor: Moved to 71.5186 after 1462 ms (table move)
17-03-18 05:07:08.264 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173816 mm (DAC = 37970)
17-03-18 05:07:08.264 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.264 -07 000000382 INF: FPGA: Recv ZSGSRD 36343
17-03-18 05:07:08.274 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:08.274 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.274 -07 000000424 INF: FPGA: Recv ZSGSRD 36348
17-03-18 05:07:08.284 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.284 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.284 -07 000000447 INF: FPGA: Recv ZSGSRD 36346
17-03-18 05:07:08.294 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.294 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.294 -07 000000424 INF: FPGA: Recv ZSGSRD 36351
17-03-18 05:07:08.304 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.304 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.304 -07 000000447 INF: FPGA: Recv ZSGSRD 36346
17-03-18 05:07:08.314 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.314 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.314 -07 000000581 INF: FPGA: Recv ZSGSRD 36349
17-03-18 05:07:08.324 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.324 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.324 -07 000000606 INF: FPGA: Recv ZSGSRD 36350
17-03-18 05:07:08.334 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.334 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.334 -07 000000382 INF: FPGA: Recv ZSGSRD 36340
17-03-18 05:07:08.344 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.344 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36344
17-03-18 05:07:08.354 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.354 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:08.354 -07 000000569 INF: FPGA: Recv ZSGSRD 36348
17-03-18 05:07:08.364 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.364 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:08.364 -07 000000625 INF: FPGA: Recv ZPIEZORD 32371
17-03-18 05:07:08.374 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:08.374 -07 000000479 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.8 V.
17-03-18 05:07:08.374 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36346 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36347 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36340 (-172.9 uncal um), Max = 36351 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:07:08.374 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36346, posNoise = 5, negNoise = 6
17-03-18 05:07:08.374 -07 000000479 INF: Z Motor: After move to -0.173816, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:08.374 -07 000000479 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:07:08.374 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:08.424 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:07:08.424 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:08.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:08.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:08.424 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:08.424 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:08.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:08.424 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:08.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:08.424 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:08.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:08.434 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:08.434 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:07:08.434 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:07:08.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:08.484 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:08.784 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:08.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:08.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:08.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:07:08.824 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:08.824 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:08.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:07:08.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:07:08.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:08.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:08.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:07:08.924 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:08.924 -07 000000455 INF: Autofocus start
17-03-18 05:07:08.924 -07 000000455 INF: MeasureProfile start
17-03-18 05:07:08.924 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:08.934 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:08.934 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:08.934 -07 000000455 INF: MeasureProfile done
17-03-18 05:07:08.934 -07 000000455 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:07:08.934 -07 000000455 INF: Autofocus finished
17-03-18 05:07:09.134 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:09.134 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:09.134 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173817766515579. ----------
17-03-18 05:07:09.144 -07 000000610 INF: Cycle	133	Tile	15	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:09.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36450, sync = True, waitForSettling = True)
17-03-18 05:07:09.144 -07 000000610 INF: Z Motor: Moving to -0.166857 mm, started at -0.173818 mm, distance = 6.96 um
17-03-18 05:07:09.144 -07 000000610 INF: FPGA: Xmit ZDACW 36450\n [Z Motor]
17-03-18 05:07:09.144 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:07:09.154 -07 000000610 INF: FPGA: 'ZDACW 36450' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:09.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:09.154 -07 000000606 INF: FPGA: Recv ZDACR 36450
17-03-18 05:07:09.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:09.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.314 -07 000000512 INF: FPGA: Recv ZSGSRD 35270
17-03-18 05:07:09.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:09.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.324 -07 000000382 INF: FPGA: Recv ZSGSRD 35262
17-03-18 05:07:09.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.334 -07 000000424 INF: FPGA: Recv ZSGSRD 35260
17-03-18 05:07:09.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.344 -07 000000467 INF: FPGA: Recv ZSGSRD 35273
17-03-18 05:07:09.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:09.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35269
17-03-18 05:07:09.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.364 -07 000000479 INF: FPGA: Recv ZSGSRD 35258
17-03-18 05:07:09.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.374 -07 000000569 INF: FPGA: Recv ZSGSRD 35266
17-03-18 05:07:09.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35261
17-03-18 05:07:09.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.394 -07 000000579 INF: FPGA: Recv ZSGSRD 35263
17-03-18 05:07:09.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:09.404 -07 000000382 INF: FPGA: Recv ZSGSRD 35271
17-03-18 05:07:09.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:09.414 -07 000000501 INF: FPGA: Recv ZPIEZORD 30927
17-03-18 05:07:09.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:09.424 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.6 V.
17-03-18 05:07:09.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35265 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35264 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35258 (-166.0 uncal um), Max = 35273 (-166.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:09.424 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35265, posNoise = 8, negNoise = 7
17-03-18 05:07:09.424 -07 000000610 INF: Z Motor: After move to -0.166857, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:09.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:07:09.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:09.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:09.424 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:09.424 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:09.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:09.424 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:09.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:09.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:09.424 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:09.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:09.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:09.424 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:09.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:09.424 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:09.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:07:09.434 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:09.434 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:07:09.434 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:07:09.444 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:07:09.444 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:09.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36627 150\n [Camera]
17-03-18 05:07:09.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:10.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:10.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:10.074 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:10.074 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:10.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:07:10.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:10.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:10.074 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:10.074 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:10.074 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:07:10.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36627 817
17-03-18 05:07:10.284 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.018051,
17-03-18 05:07:10.414 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:10.474 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:07:10.474 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:07:10.474 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:10.474 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:07:10.474 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:07:10.474 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:10.474 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:10.474 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:07:10.484 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:10.484 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:07:10.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:10.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:10.624 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:10.624 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:10.624 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:07:10.624 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:10.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:10.624 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:10.634 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:10.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:07:10.814 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:10.814 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:10.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36627 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-18 05:07:10.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:07:10.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.166873193190335. ------
17-03-18 05:07:10.824 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:10.824 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17317 mm
17-03-18 05:07:10.824 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:10.824 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:07:10.824 -07 000000474 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:07:10.824 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37828, sync = True, waitForSettling = False)
17-03-18 05:07:10.824 -07 000000479 INF: Z Motor: Moving to -0.173165 mm, started at -0.166873 mm, distance = -6.29 um
17-03-18 05:07:10.824 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:10.834 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:10.834 -07 000000479 INF: FPGA: Xmit ZDACW 37828\n [Z Motor]
17-03-18 05:07:10.834 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:07:10.844 -07 000000479 INF: FPGA: 'ZDACW 37828' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:07:10.844 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:10.844 -07 000000447 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:07:10.854 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:10.854 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:07:10.854 -07 000000474 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:10.964 -07 000000474 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:10.964 -07 000000474 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:07:10.964 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:10.964 -07 000000382 INF: FPGA: Recv ZDACR 37828
17-03-18 05:07:10.974 -07 000000479 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 05:07:10.974 -07 000000479 INF: Z Motor: MoveAbsStepped took 143 ms (did NOT wait for settling yet))
17-03-18 05:07:10.974 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:11.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:07:11.024 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:07:11.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:11.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:07:11.024 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:07:11.024 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:11.034 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:11.034 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:07:11.034 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:07:11.034 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:07:11.054 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:11.054 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 91 ms to get response, and 222 ms overall
17-03-18 05:07:11.344 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:07:11.344 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:07:11.394 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:11.404 -07 000000625 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:07:11.414 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:11.414 -07 000000474 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:11.414 -07 000000474 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 05:07:11.414 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-18 05:07:11.734 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:12.364 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:12.364 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:07:12.374 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.374 -07 000000474 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:12.404 -07 000000474 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:12.404 -07 000000474 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:12.404 -07 000000474 INF: Y Motor: Moved to 72.3491 after 1574 ms (table move)
17-03-18 05:07:12.404 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173165 mm (DAC = 37828)
17-03-18 05:07:12.404 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.404 -07 000000581 INF: FPGA: Recv ZSGSRD 36244
17-03-18 05:07:12.414 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:12.414 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.414 -07 000000579 INF: FPGA: Recv ZSGSRD 36252
17-03-18 05:07:12.424 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.424 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.424 -07 000000474 INF: FPGA: Recv ZSGSRD 36243
17-03-18 05:07:12.434 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.434 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.434 -07 000000501 INF: FPGA: Recv ZSGSRD 36242
17-03-18 05:07:12.444 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.444 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.444 -07 000000424 INF: FPGA: Recv ZSGSRD 36246
17-03-18 05:07:12.454 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.454 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.454 -07 000000581 INF: FPGA: Recv ZSGSRD 36249
17-03-18 05:07:12.464 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.464 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.464 -07 000000625 INF: FPGA: Recv ZSGSRD 36249
17-03-18 05:07:12.474 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.474 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.474 -07 000000608 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:07:12.484 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.484 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.484 -07 000000382 INF: FPGA: Recv ZSGSRD 36245
17-03-18 05:07:12.494 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.494 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:12.494 -07 000000579 INF: FPGA: Recv ZSGSRD 36245
17-03-18 05:07:12.504 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.504 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:12.504 -07 000000467 INF: FPGA: Recv ZPIEZORD 32297
17-03-18 05:07:12.514 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:12.514 -07 000000569 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.7 V.
17-03-18 05:07:12.514 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36247 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36246 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36242 (-172.3 uncal um), Max = 36252 (-172.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:07:12.514 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36247, posNoise = 5, negNoise = 5
17-03-18 05:07:12.514 -07 000000569 INF: Z Motor: After move to -0.173165, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:12.514 -07 000000569 INF: Z Motor: Settle wait time = 1577 ms, measure time = 106 ms (allowed 150 ms), total time = 1683 ms
17-03-18 05:07:12.514 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:12.564 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:07:12.564 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:12.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:12.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:12.564 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:12.564 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:12.564 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:12.564 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:12.564 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:12.574 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:12.574 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:12.574 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:12.584 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:07:12.584 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:07:12.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:12.624 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:12.924 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:12.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:12.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:12.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:12.964 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:12.964 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:12.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:07:13.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:07:13.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:13.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:13.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:07:13.064 -07 000000579 INF: Autofocus start
17-03-18 05:07:13.064 -07 000000579 INF: MeasureProfile start
17-03-18 05:07:13.064 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:13.064 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:13.074 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:13.074 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:13.074 -07 000000579 INF: MeasureProfile done
17-03-18 05:07:13.074 -07 000000579 INF: X=64  Z correction [um]=0.2557664
17-03-18 05:07:13.074 -07 000000579 INF: Autofocus finished
17-03-18 05:07:13.274 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:13.274 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:13.274 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173181769513544. ----------
17-03-18 05:07:13.274 -07 000000610 INF: Cycle	133	Tile	16	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:13.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36397, sync = True, waitForSettling = True)
17-03-18 05:07:13.284 -07 000000610 INF: Z Motor: Moving to -0.166615 mm, started at -0.173182 mm, distance = 6.57 um
17-03-18 05:07:13.284 -07 000000610 INF: FPGA: Xmit ZDACW 36397\n [Z Motor]
17-03-18 05:07:13.284 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:07:13.294 -07 000000610 INF: FPGA: 'ZDACW 36397' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:13.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:13.294 -07 000000447 INF: FPGA: Recv ZDACR 36397
17-03-18 05:07:13.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:13.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35227
17-03-18 05:07:13.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:13.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.464 -07 000000579 INF: FPGA: Recv ZSGSRD 35222
17-03-18 05:07:13.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35226
17-03-18 05:07:13.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.484 -07 000000608 INF: FPGA: Recv ZSGSRD 35228
17-03-18 05:07:13.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.494 -07 000000424 INF: FPGA: Recv ZSGSRD 35229
17-03-18 05:07:13.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.504 -07 000000606 INF: FPGA: Recv ZSGSRD 35230
17-03-18 05:07:13.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.514 -07 000000625 INF: FPGA: Recv ZSGSRD 35222
17-03-18 05:07:13.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.524 -07 000000467 INF: FPGA: Recv ZSGSRD 35228
17-03-18 05:07:13.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.534 -07 000000618 INF: FPGA: Recv ZSGSRD 35229
17-03-18 05:07:13.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:13.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35221
17-03-18 05:07:13.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:13.554 -07 000000606 INF: FPGA: Recv ZPIEZORD 30909
17-03-18 05:07:13.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:13.564 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.5 V.
17-03-18 05:07:13.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35226 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35221 (-165.7 uncal um), Max = 35230 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:07:13.564 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35226, posNoise = 4, negNoise = 5
17-03-18 05:07:13.564 -07 000000610 INF: Z Motor: After move to -0.166615, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:13.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:07:13.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:13.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:13.564 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:13.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:13.564 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:13.564 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:13.564 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:13.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:13.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:13.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:13.574 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:13.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:13.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:13.574 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:13.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:07:13.574 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:13.584 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:07:13.584 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:13.584 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:07:13.584 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:13.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36573 150\n [Camera]
17-03-18 05:07:13.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:14.214 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:14.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:14.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:14.224 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:14.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:14.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:14.224 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:14.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:14.224 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:14.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:14.414 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36573 817
17-03-18 05:07:14.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:14.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:07:14.614 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:07:14.614 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:14.614 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:14.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:07:14.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:07:14.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:14.624 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:14.624 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:07:14.624 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:07:14.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:14.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:14.774 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:14.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:14.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:14.774 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:14.774 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:14.774 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:07:14.774 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:14.774 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:07:14.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:14.964 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:14.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36573 150' command took 2 ms to send, 1371 ms to get response, and 1375 ms overall
17-03-18 05:07:14.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:07:14.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166622648916806. ------
17-03-18 05:07:15.084 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:15.084 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17319 mm
17-03-18 05:07:15.084 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:15.094 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:15.094 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:07:15.094 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:07:15.094 -07 000000447 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:07:15.094 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37834, sync = True, waitForSettling = False)
17-03-18 05:07:15.094 -07 000000502 INF: Z Motor: Moving to -0.173193 mm, started at -0.166623 mm, distance = -6.57 um
17-03-18 05:07:15.094 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:15.114 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:15.114 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:07:15.124 -07 000000502 INF: FPGA: Xmit ZDACW 37834\n [Z Motor]
17-03-18 05:07:15.124 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:07:15.124 -07 000000447 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:15.124 -07 000000447 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:15.124 -07 000000447 INF: Y Motor: Moving 1350 steps-28
17-03-18 05:07:15.124 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:07:15.134 -07 000000502 INF: FPGA: 'ZDACW 37834' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 05:07:15.144 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:15.154 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:15.154 -07 000000569 INF: FPGA: Recv ZDACR 37834
17-03-18 05:07:15.164 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:07:15.164 -07 000000502 INF: Z Motor: MoveAbsStepped took 68 ms (did NOT wait for settling yet))
17-03-18 05:07:15.174 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:07:15.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:07:15.174 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:07:15.174 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:15.174 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:07:15.174 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:15.184 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:07:15.184 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:07:15.184 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:15.184 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:07:15.294 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:15.294 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:07:15.514 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:07:15.514 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:07:15.564 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:15.564 -07 000000626 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:07:15.574 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:15.574 -07 000000447 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:15.574 -07 000000447 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:07:15.574 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 05:07:15.644 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.989471,
17-03-18 05:07:16.524 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:16.524 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:07:16.534 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:16.534 -07 000000447 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:16.564 -07 000000447 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:16.564 -07 000000447 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:16.564 -07 000000447 INF: Y Motor: Moved to 73.1753 after 1470 ms (table move)
17-03-18 05:07:16.564 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173193 mm (DAC = 37834)
17-03-18 05:07:16.564 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.564 -07 000000512 INF: FPGA: Recv ZSGSRD 36252
17-03-18 05:07:16.574 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:16.574 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.574 -07 000000447 INF: FPGA: Recv ZSGSRD 36252
17-03-18 05:07:16.584 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.584 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.584 -07 000000382 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:07:16.594 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.594 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.594 -07 000000467 INF: FPGA: Recv ZSGSRD 36249
17-03-18 05:07:16.604 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.604 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.604 -07 000000502 INF: FPGA: Recv ZSGSRD 36257
17-03-18 05:07:16.614 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.614 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36247
17-03-18 05:07:16.624 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.624 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.624 -07 000000424 INF: FPGA: Recv ZSGSRD 36247
17-03-18 05:07:16.634 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.634 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.634 -07 000000382 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:07:16.644 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.644 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.644 -07 000000455 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:07:16.654 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.654 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:16.654 -07 000000626 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:07:16.664 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.664 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:16.664 -07 000000382 INF: FPGA: Recv ZPIEZORD 32307
17-03-18 05:07:16.674 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:16.674 -07 000000479 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.7 V.
17-03-18 05:07:16.674 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36250 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36250 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36247 (-172.3 uncal um), Max = 36257 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:07:16.674 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36250, posNoise = 7, negNoise = 3
17-03-18 05:07:16.674 -07 000000479 INF: Z Motor: After move to -0.173193, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:16.674 -07 000000479 INF: Z Motor: Settle wait time = 1473 ms, measure time = 105 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:07:16.674 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:16.724 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 05:07:16.724 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:16.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:16.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:16.724 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:16.724 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:16.724 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:16.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:16.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:16.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:16.734 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:16.734 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:16.734 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:16.734 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:07:16.744 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:07:16.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:16.784 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:17.084 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:17.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:17.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:17.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:17.124 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:17.124 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:17.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:07:17.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:07:17.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:17.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:17.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:07:17.224 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:17.224 -07 000000480 INF: Autofocus start
17-03-18 05:07:17.224 -07 000000480 INF: MeasureProfile start
17-03-18 05:07:17.224 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:17.234 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:17.234 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:17.244 -07 000000480 INF: MeasureProfile done
17-03-18 05:07:17.244 -07 000000480 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:07:17.244 -07 000000480 INF: Autofocus finished
17-03-18 05:07:17.434 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:17.434 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:17.434 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.17320104214997. ----------
17-03-18 05:07:17.434 -07 000000610 INF: Cycle	133	Tile	17	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:17.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36314, sync = True, waitForSettling = True)
17-03-18 05:07:17.444 -07 000000610 INF: Z Motor: Moving to -0.166235 mm, started at -0.173201 mm, distance = 6.97 um
17-03-18 05:07:17.444 -07 000000610 INF: FPGA: Xmit ZDACW 36314\n [Z Motor]
17-03-18 05:07:17.444 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:07:17.454 -07 000000610 INF: FPGA: 'ZDACW 36314' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:17.454 -07 000000502 INF: FPGA: Recv ZDACR 36314
17-03-18 05:07:17.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:17.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.614 -07 000000447 INF: FPGA: Recv ZSGSRD 35160
17-03-18 05:07:17.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:17.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.624 -07 000000501 INF: FPGA: Recv ZSGSRD 35166
17-03-18 05:07:17.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.634 -07 000000579 INF: FPGA: Recv ZSGSRD 35172
17-03-18 05:07:17.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35165
17-03-18 05:07:17.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.654 -07 000000479 INF: FPGA: Recv ZSGSRD 35167
17-03-18 05:07:17.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.664 -07 000000447 INF: FPGA: Recv ZSGSRD 35167
17-03-18 05:07:17.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.674 -07 000000424 INF: FPGA: Recv ZSGSRD 35166
17-03-18 05:07:17.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.684 -07 000000474 INF: FPGA: Recv ZSGSRD 35171
17-03-18 05:07:17.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.694 -07 000000512 INF: FPGA: Recv ZSGSRD 35166
17-03-18 05:07:17.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:17.704 -07 000000467 INF: FPGA: Recv ZSGSRD 35167
17-03-18 05:07:17.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:17.714 -07 000000569 INF: FPGA: Recv ZPIEZORD 30851
17-03-18 05:07:17.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:17.724 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.5 V.
17-03-18 05:07:17.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35167 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35166 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35160 (-165.3 uncal um), Max = 35172 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:17.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35167, posNoise = 5, negNoise = 7
17-03-18 05:07:17.724 -07 000000610 INF: Z Motor: After move to -0.166235, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:17.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:07:17.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:17.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:17.724 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:17.724 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:17.724 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:17.724 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:17.724 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:17.724 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:17.724 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:07:17.724 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:17.724 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:07:17.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:17.734 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:17.734 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:17.734 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:07:17.734 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:17.744 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:07:17.744 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:17.744 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:07:17.744 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:07:17.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36491 150\n [Camera]
17-03-18 05:07:17.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:18.374 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:18.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:18.374 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:18.374 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:18.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:18.384 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:18.384 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:18.384 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:18.384 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:18.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:18.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36491 817
17-03-18 05:07:18.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:18.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:07:18.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:07:18.784 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:18.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:07:18.784 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:07:18.784 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:18.784 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:18.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:07:18.784 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:18.794 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:07:18.924 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:18.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:18.924 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:18.924 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:18.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:18.934 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:18.934 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:18.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:07:18.934 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:18.934 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:07:19.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:19.114 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:19.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36491 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-18 05:07:19.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:07:19.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166243620400443. ------
17-03-18 05:07:19.124 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:19.124 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17216 mm
17-03-18 05:07:19.124 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:19.124 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:07:19.124 -07 000000467 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:07:19.124 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:19.124 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37607, sync = True, waitForSettling = False)
17-03-18 05:07:19.124 -07 000000447 INF: Z Motor: Moving to -0.172154 mm, started at -0.166244 mm, distance = -5.91 um
17-03-18 05:07:19.134 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:19.134 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:19.134 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:07:19.144 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:07:19.144 -07 000000467 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:19.144 -07 000000447 INF: FPGA: Xmit ZDACW 37607\n [Z Motor]
17-03-18 05:07:19.144 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:07:19.144 -07 000000467 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:19.144 -07 000000467 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:07:19.154 -07 000000447 INF: FPGA: 'ZDACW 37607' command took 3 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:07:19.154 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:19.164 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:19.174 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:19.174 -07 000000618 INF: FPGA: Recv ZDACR 37607
17-03-18 05:07:19.184 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:07:19.184 -07 000000447 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:07:19.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:07:19.334 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:07:19.334 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:19.334 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:07:19.334 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:07:19.334 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:19.334 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:19.334 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:19.334 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:07:19.344 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:07:19.354 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:19.354 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:07:19.544 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:07:19.544 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-18 05:07:19.584 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:19.584 -07 000000461 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:07:19.594 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:19.594 -07 000000467 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:19.594 -07 000000467 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:07:19.594 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.847 mm, average velocity = 2.156 mm/sec
17-03-18 05:07:20.544 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:20.544 -07 000000382 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:07:20.554 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:20.554 -07 000000467 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:20.574 -07 000000467 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:20.574 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:07:20.574 -07 000000467 INF: Y Motor: Moved to 74.0078 after 1447 ms (table move)
17-03-18 05:07:20.574 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172154 mm (DAC = 37607)
17-03-18 05:07:20.574 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.584 -07 000000382 INF: FPGA: Recv ZSGSRD 36090
17-03-18 05:07:20.584 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:07:20.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.584 -07 000000424 INF: FPGA: Recv ZSGSRD 36090
17-03-18 05:07:20.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:20.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36092
17-03-18 05:07:20.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.604 -07 000000474 INF: FPGA: Recv ZSGSRD 36084
17-03-18 05:07:20.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.614 -07 000000479 INF: FPGA: Recv ZSGSRD 36087
17-03-18 05:07:20.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.624 -07 000000447 INF: FPGA: Recv ZSGSRD 36091
17-03-18 05:07:20.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.634 -07 000000606 INF: FPGA: Recv ZSGSRD 36088
17-03-18 05:07:20.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.644 -07 000000461 INF: FPGA: Recv ZSGSRD 36092
17-03-18 05:07:20.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.654 -07 000000626 INF: FPGA: Recv ZSGSRD 36090
17-03-18 05:07:20.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:20.664 -07 000000512 INF: FPGA: Recv ZSGSRD 36090
17-03-18 05:07:20.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.674 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:20.674 -07 000000447 INF: FPGA: Recv ZPIEZORD 32097
17-03-18 05:07:20.684 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:20.684 -07 000000569 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.8 V.
17-03-18 05:07:20.684 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36089 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36090 (-171.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:07:20.684 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36089, posNoise = 3, negNoise = 5
17-03-18 05:07:20.684 -07 000000569 INF: Z Motor: After move to -0.172154, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:20.684 -07 000000569 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:07:20.684 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:20.734 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 05:07:20.734 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:20.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:20.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:20.734 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:20.734 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:20.734 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:20.734 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:20.734 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:07:20.734 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:20.744 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:20.744 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:20.744 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:07:20.744 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:07:20.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:20.794 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:21.004 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.985358,
17-03-18 05:07:21.094 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:21.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:21.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:21.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:07:21.134 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:21.134 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:21.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:07:21.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:07:21.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:21.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:21.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:07:21.234 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:21.234 -07 000000608 INF: Autofocus start
17-03-18 05:07:21.234 -07 000000608 INF: MeasureProfile start
17-03-18 05:07:21.244 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:21.244 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 05:07:21.244 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:21.244 -07 000000608 INF: MeasureProfile done
17-03-18 05:07:21.244 -07 000000608 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:07:21.244 -07 000000608 INF: Autofocus finished
17-03-18 05:07:21.444 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:21.444 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:07:21.454 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172166743995146. ----------
17-03-18 05:07:21.454 -07 000000610 INF: Cycle	133	Tile	18	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:21.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36087, sync = True, waitForSettling = True)
17-03-18 05:07:21.454 -07 000000610 INF: Z Motor: Moving to -0.165196 mm, started at -0.172167 mm, distance = 6.97 um
17-03-18 05:07:21.454 -07 000000610 INF: FPGA: Xmit ZDACW 36087\n [Z Motor]
17-03-18 05:07:21.454 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:07:21.464 -07 000000610 INF: FPGA: 'ZDACW 36087' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:21.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:21.464 -07 000000501 INF: FPGA: Recv ZDACR 36087
17-03-18 05:07:21.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:21.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.624 -07 000000502 INF: FPGA: Recv ZSGSRD 35011
17-03-18 05:07:21.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:21.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.634 -07 000000501 INF: FPGA: Recv ZSGSRD 35005
17-03-18 05:07:21.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.644 -07 000000625 INF: FPGA: Recv ZSGSRD 35006
17-03-18 05:07:21.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.654 -07 000000501 INF: FPGA: Recv ZSGSRD 35007
17-03-18 05:07:21.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.664 -07 000000626 INF: FPGA: Recv ZSGSRD 35006
17-03-18 05:07:21.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.674 -07 000000461 INF: FPGA: Recv ZSGSRD 35010
17-03-18 05:07:21.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.684 -07 000000569 INF: FPGA: Recv ZSGSRD 35008
17-03-18 05:07:21.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.694 -07 000000382 INF: FPGA: Recv ZSGSRD 35004
17-03-18 05:07:21.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.704 -07 000000501 INF: FPGA: Recv ZSGSRD 35005
17-03-18 05:07:21.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:21.714 -07 000000467 INF: FPGA: Recv ZSGSRD 35004
17-03-18 05:07:21.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:21.724 -07 000000479 INF: FPGA: Recv ZPIEZORD 30651
17-03-18 05:07:21.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:21.734 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.6 V.
17-03-18 05:07:21.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35007 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35006 (-164.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35004 (-164.3 uncal um), Max = 35011 (-164.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:07:21.734 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35007, posNoise = 4, negNoise = 3
17-03-18 05:07:21.734 -07 000000610 INF: Z Motor: After move to -0.165196, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:21.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 05:07:21.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:21.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:21.734 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:21.734 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:21.734 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:21.734 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:21.734 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:21.734 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:21.734 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:21.734 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:07:21.744 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:21.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:21.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:21.744 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:21.744 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:21.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:21.744 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:21.754 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:07:21.754 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:07:21.754 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:07:21.754 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:07:21.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36264 150\n [Camera]
17-03-18 05:07:21.954 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:22.384 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:22.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:22.394 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:22.394 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:22.394 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:07:22.394 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:22.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:22.394 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:22.394 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:22.394 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:07:22.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36264 817
17-03-18 05:07:22.734 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:22.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:07:22.794 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:07:22.794 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:22.794 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:22.794 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:07:22.794 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:07:22.794 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:07:22.794 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:22.804 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:22.804 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:07:22.944 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:22.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:22.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:22.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:22.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:07:22.944 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:22.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:22.944 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:22.944 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:22.944 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:07:23.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:23.134 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:23.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36264 150' command took 2 ms to send, 1372 ms to get response, and 1375 ms overall
17-03-18 05:07:23.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:07:23.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165215746457761. ------
17-03-18 05:07:23.134 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:23.134 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17151 mm
17-03-18 05:07:23.134 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:23.244 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:23.254 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-18 05:07:23.254 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:23.254 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:07:23.254 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37467, sync = True, waitForSettling = False)
17-03-18 05:07:23.254 -07 000000467 INF: Z Motor: Moving to -0.171513 mm, started at -0.165216 mm, distance = -6.30 um
17-03-18 05:07:23.254 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 05:07:23.264 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:23.264 -07 000000581 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:07:23.274 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:07:23.274 -07 000000382 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:23.274 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:23.274 -07 000000382 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:07:23.274 -07 000000467 INF: FPGA: Xmit ZDACW 37467\n [Z Motor]
17-03-18 05:07:23.274 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:07:23.284 -07 000000467 INF: FPGA: 'ZDACW 37467' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:07:23.284 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:23.284 -07 000000625 INF: FPGA: Recv ZDACR 37467
17-03-18 05:07:23.294 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:23.294 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:23.294 -07 000000467 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:07:23.344 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:07:23.344 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:07:23.344 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:23.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:07:23.344 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:07:23.344 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:23.344 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:23.344 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:07:23.344 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:07:23.354 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:07:23.454 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:23.454 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:23.664 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:07:23.664 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:07:23.694 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:23.704 -07 000000461 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:07:23.704 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:07:23.704 -07 000000382 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:23.704 -07 000000382 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:07:23.704 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:07:24.654 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:24.654 -07 000000424 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:07:24.664 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:24.664 -07 000000382 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:24.684 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:24.684 -07 000000382 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:24.684 -07 000000382 INF: Y Motor: Moved to 74.8311 after 1428 ms (table move)
17-03-18 05:07:24.684 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171513 mm (DAC = 37467)
17-03-18 05:07:24.684 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.684 -07 000000480 INF: FPGA: Recv ZSGSRD 35983
17-03-18 05:07:24.694 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:24.694 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.694 -07 000000606 INF: FPGA: Recv ZSGSRD 35980
17-03-18 05:07:24.704 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.704 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.704 -07 000000608 INF: FPGA: Recv ZSGSRD 35987
17-03-18 05:07:24.714 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.714 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.714 -07 000000382 INF: FPGA: Recv ZSGSRD 35992
17-03-18 05:07:24.724 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.724 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.724 -07 000000501 INF: FPGA: Recv ZSGSRD 35985
17-03-18 05:07:24.734 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.734 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35996
17-03-18 05:07:24.744 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.744 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35996
17-03-18 05:07:24.754 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.754 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.754 -07 000000608 INF: FPGA: Recv ZSGSRD 35990
17-03-18 05:07:24.764 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.764 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.764 -07 000000382 INF: FPGA: Recv ZSGSRD 35983
17-03-18 05:07:24.774 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.774 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:24.774 -07 000000501 INF: FPGA: Recv ZSGSRD 35986
17-03-18 05:07:24.784 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.784 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:24.784 -07 000000581 INF: FPGA: Recv ZPIEZORD 31973
17-03-18 05:07:24.794 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:24.794 -07 000000447 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.9 V.
17-03-18 05:07:24.794 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35988 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35986 (-170.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35980 (-170.6 uncal um), Max = 35996 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:07:24.794 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35988, posNoise = 8, negNoise = 8
17-03-18 05:07:24.794 -07 000000447 INF: Z Motor: After move to -0.171513, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:24.794 -07 000000447 INF: Z Motor: Settle wait time = 1431 ms, measure time = 107 ms (allowed 150 ms), total time = 1538 ms
17-03-18 05:07:24.794 -07 000000447 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:24.844 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1702 ms
17-03-18 05:07:24.844 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:24.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:24.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:24.844 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:24.844 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:24.844 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:24.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:24.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:24.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:24.854 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:24.854 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:24.864 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:07:24.864 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:07:24.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:24.904 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:25.204 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:25.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:25.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:25.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:25.244 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:25.244 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:25.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:07:25.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:07:25.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:25.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:25.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:07:25.344 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:25.344 -07 000000480 INF: Autofocus start
17-03-18 05:07:25.344 -07 000000480 INF: MeasureProfile start
17-03-18 05:07:25.344 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:25.354 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:25.354 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:25.354 -07 000000480 INF: MeasureProfile done
17-03-18 05:07:25.354 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:07:25.354 -07 000000480 INF: Autofocus finished
17-03-18 05:07:25.554 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:25.554 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:25.564 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171517898568828. ----------
17-03-18 05:07:25.564 -07 000000610 INF: Cycle	133	Tile	19	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:25.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35981, sync = True, waitForSettling = True)
17-03-18 05:07:25.564 -07 000000610 INF: Z Motor: Moving to -0.164710 mm, started at -0.171518 mm, distance = 6.81 um
17-03-18 05:07:25.574 -07 000000610 INF: FPGA: Xmit ZDACW 35981\n [Z Motor]
17-03-18 05:07:25.574 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:07:25.584 -07 000000610 INF: FPGA: 'ZDACW 35981' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:07:25.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:25.584 -07 000000581 INF: FPGA: Recv ZDACR 35981
17-03-18 05:07:25.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:25.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.744 -07 000000382 INF: FPGA: Recv ZSGSRD 34930
17-03-18 05:07:25.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:25.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.754 -07 000000569 INF: FPGA: Recv ZSGSRD 34929
17-03-18 05:07:25.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.764 -07 000000424 INF: FPGA: Recv ZSGSRD 34932
17-03-18 05:07:25.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.774 -07 000000618 INF: FPGA: Recv ZSGSRD 34930
17-03-18 05:07:25.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.784 -07 000000625 INF: FPGA: Recv ZSGSRD 34930
17-03-18 05:07:25.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.794 -07 000000382 INF: FPGA: Recv ZSGSRD 34929
17-03-18 05:07:25.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.804 -07 000000502 INF: FPGA: Recv ZSGSRD 34933
17-03-18 05:07:25.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.814 -07 000000501 INF: FPGA: Recv ZSGSRD 34929
17-03-18 05:07:25.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.824 -07 000000626 INF: FPGA: Recv ZSGSRD 34927
17-03-18 05:07:25.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:25.834 -07 000000467 INF: FPGA: Recv ZSGSRD 34932
17-03-18 05:07:25.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:25.844 -07 000000382 INF: FPGA: Recv ZPIEZORD 30553
17-03-18 05:07:25.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:25.854 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.490 V. Piezo Error = -9.6 V.
17-03-18 05:07:25.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34930 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34930 (-163.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 34927 (-163.8 uncal um), Max = 34933 (-163.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:07:25.854 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34930, posNoise = 3, negNoise = 3
17-03-18 05:07:25.854 -07 000000610 INF: Z Motor: After move to -0.164710, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:25.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 05:07:25.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:25.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:25.854 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:25.854 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:25.854 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:25.854 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:25.854 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:25.854 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:25.854 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:25.854 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:25.854 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:25.854 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:25.854 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:25.854 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:25.864 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:25.864 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:25.864 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:07:25.864 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:07:25.874 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:07:25.874 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:25.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36158 150\n [Camera]
17-03-18 05:07:26.074 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:26.364 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.996267,
17-03-18 05:07:26.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:26.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:26.514 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:26.514 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:26.514 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:26.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:26.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:26.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:26.524 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:26.524 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:26.704 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36158 817
17-03-18 05:07:26.734 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:26.854 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:26.894 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 05:07:26.894 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:07:26.894 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:26.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:07:26.894 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:07:26.894 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:26.894 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:26.894 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:07:26.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:26.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:07:27.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:27.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:27.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:27.064 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:27.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:27.064 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:27.074 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:27.074 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:07:27.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:27.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:07:27.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:27.254 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:27.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36158 150' command took 2 ms to send, 1365 ms to get response, and 1381 ms overall
17-03-18 05:07:27.464 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:07:27.464 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:07:27.464 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:27.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:07:27.464 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:07:27.464 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:27.474 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:27.474 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:07:27.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:07:27.584 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 120 ms.
17-03-18 05:07:27.594 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 05:07:27.624 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 158 ms.
17-03-18 05:07:27.624 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:07:27.674 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:07:27.674 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:07:27.674 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:07:27.674 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 05:07:27.684 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:27.684 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:07:28.184 -07 000000479 INF: FPGA: Recv EMIN
17-03-18 05:07:28.184 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:07:28.184 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:07:28.184 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 05:07:28.194 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:28.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:28.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164721082122845. ------
17-03-18 05:07:28.194 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:28.194 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13924 mm
17-03-18 05:07:28.194 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:28.194 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:28.204 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:28.204 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:28.204 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30418, sync = True, waitForSettling = False)
17-03-18 05:07:28.204 -07 000000626 INF: Z Motor: Moving to -0.139245 mm, started at -0.164721 mm, distance = 25.48 um
17-03-18 05:07:28.204 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:07:28.204 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 05:07:28.214 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:28.214 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-18 05:07:28.224 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:07:28.224 -07 000000608 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:28.224 -07 000000626 INF: FPGA: Xmit ZDACW 30418\n [Z Motor]
17-03-18 05:07:28.224 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:07:28.224 -07 000000608 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:07:28.224 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:07:28.234 -07 000000626 INF: FPGA: 'ZDACW 30418' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:07:28.234 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:28.234 -07 000000424 INF: FPGA: Recv ZDACR 30418
17-03-18 05:07:28.244 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:07:28.244 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:28.244 -07 000000626 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:07:28.404 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:28.404 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:29.874 -07 000000424 INF: FPGA: Recv YMVTO 122701 23905
17-03-18 05:07:29.874 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1620 ms to get response, and 1641 ms overall
17-03-18 05:07:29.874 -07 000000608 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:07:29.874 -07 000000608 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23905 steps (14.941 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:07:29.874 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1641 ms, distance = 14.918 mm, average velocity = 9.091 mm/sec
17-03-18 05:07:31.724 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.981281,
17-03-18 05:07:31.734 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:31.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:32.724 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:32.724 -07 000000569 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:07:32.734 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:32.734 -07 000000608 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:32.774 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:32.774 -07 000000608 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:07:32.774 -07 000000608 INF: Y Motor: Moved to 59.9097 after 4569 ms
17-03-18 05:07:32.774 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139245 mm (DAC = 30418)
17-03-18 05:07:32.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.774 -07 000000480 INF: FPGA: Recv ZSGSRD 30966
17-03-18 05:07:32.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:32.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.784 -07 000000382 INF: FPGA: Recv ZSGSRD 30967
17-03-18 05:07:32.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.794 -07 000000512 INF: FPGA: Recv ZSGSRD 30962
17-03-18 05:07:32.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.804 -07 000000625 INF: FPGA: Recv ZSGSRD 30965
17-03-18 05:07:32.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.814 -07 000000479 INF: FPGA: Recv ZSGSRD 30965
17-03-18 05:07:32.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30966
17-03-18 05:07:32.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.834 -07 000000382 INF: FPGA: Recv ZSGSRD 30970
17-03-18 05:07:32.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.844 -07 000000512 INF: FPGA: Recv ZSGSRD 30965
17-03-18 05:07:32.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.854 -07 000000608 INF: FPGA: Recv ZSGSRD 30960
17-03-18 05:07:32.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:32.864 -07 000000501 INF: FPGA: Recv ZSGSRD 30967
17-03-18 05:07:32.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.874 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:32.874 -07 000000461 INF: FPGA: Recv ZPIEZORD 26410
17-03-18 05:07:32.884 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:32.884 -07 000000467 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -10.0 V.
17-03-18 05:07:32.884 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30965 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30966 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30960 (-138.4 uncal um), Max = 30970 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:07:32.884 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30965, posNoise = 5, negNoise = 5
17-03-18 05:07:32.884 -07 000000467 INF: Z Motor: After move to -0.139245, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:32.884 -07 000000467 INF: Z Motor: Settle wait time = 4573 ms, measure time = 106 ms (allowed 150 ms), total time = 4679 ms
17-03-18 05:07:32.884 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:32.934 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4734 ms
17-03-18 05:07:32.934 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:32.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:32.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:32.934 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:32.934 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:32.934 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:32.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:32.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:32.934 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:07:32.964 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:07:32.964 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:32.964 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:07:32.964 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:32.974 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:07:32.974 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 05:07:32.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:33.024 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:33.324 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:33.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:33.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:33.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:33.364 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:33.364 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:33.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:07:33.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 05:07:33.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:33.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:07:33.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:07:33.464 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:33.464 -07 000000512 INF: Image SNR check: start
17-03-18 05:07:33.464 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:33.474 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:33.474 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:33.484 -07 000000512 INF: Image SNR check: pass  [peak (Max-Min)=122.50]
17-03-18 05:07:33.484 -07 000000512 INF: Autofocus start
17-03-18 05:07:33.484 -07 000000512 INF: MeasureProfile start
17-03-18 05:07:33.494 -07 000000512 INF: MeasureProfile done
17-03-18 05:07:33.494 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:07:33.494 -07 000000512 INF: Autofocus finished
17-03-18 05:07:33.674 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:33.674 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:33.674 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139249080980763. ----------
17-03-18 05:07:33.674 -07 000000610 INF: Cycle	133	Tile	1	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:33.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28942, sync = True, waitForSettling = True)
17-03-18 05:07:33.684 -07 000000610 INF: Z Motor: Moving to -0.132488 mm, started at -0.139249 mm, distance = 6.76 um
17-03-18 05:07:33.684 -07 000000610 INF: FPGA: Xmit ZDACW 28942\n [Z Motor]
17-03-18 05:07:33.684 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:07:33.694 -07 000000610 INF: FPGA: 'ZDACW 28942' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:33.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:33.694 -07 000000608 INF: FPGA: Recv ZDACR 28942
17-03-18 05:07:33.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:33.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.854 -07 000000618 INF: FPGA: Recv ZSGSRD 29918
17-03-18 05:07:33.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:33.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:07:33.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.874 -07 000000461 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:07:33.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.884 -07 000000447 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:07:33.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:07:33.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.904 -07 000000455 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:07:33.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:07:33.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.924 -07 000000581 INF: FPGA: Recv ZSGSRD 29914
17-03-18 05:07:33.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.934 -07 000000626 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:07:33.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:33.944 -07 000000501 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:07:33.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:33.954 -07 000000569 INF: FPGA: Recv ZPIEZORD 25299
17-03-18 05:07:33.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:33.964 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.1 V.
17-03-18 05:07:33.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29914 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29910 (-131.7 uncal um), Max = 29918 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:07:33.964 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 4, negNoise = 4
17-03-18 05:07:33.964 -07 000000610 INF: Z Motor: After move to -0.132488, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:33.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:07:33.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:33.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:33.964 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:33.964 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:33.964 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:33.964 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:33.964 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:33.964 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:33.964 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:33.964 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:07:33.964 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:33.964 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:33.974 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:33.974 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:33.974 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:07:33.974 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:07:33.984 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:07:33.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:33.994 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:07:33.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:33.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:07:33.994 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 05:07:34.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29119 150\n [Camera]
17-03-18 05:07:34.204 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:34.634 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:34.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:34.634 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:34.634 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:34.644 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:34.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:34.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:34.644 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:34.644 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:34.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:34.824 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29119 817
17-03-18 05:07:34.974 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:35.014 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:07:35.014 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:07:35.014 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:35.024 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:35.024 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:07:35.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:07:35.024 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:07:35.024 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:35.024 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:35.034 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:07:35.184 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:35.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:35.184 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:35.184 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:35.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:35.184 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:35.194 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:35.194 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:07:35.194 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:35.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:07:35.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:35.374 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:35.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29119 150' command took 2 ms to send, 1365 ms to get response, and 1374 ms overall
17-03-18 05:07:35.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:35.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132497234019772. ------
17-03-18 05:07:35.384 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:35.384 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13890 mm
17-03-18 05:07:35.384 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:35.384 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:35.384 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:07:35.384 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:07:35.384 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30342, sync = True, waitForSettling = False)
17-03-18 05:07:35.384 -07 000000461 INF: Z Motor: Moving to -0.138897 mm, started at -0.132497 mm, distance = -6.40 um
17-03-18 05:07:35.394 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:35.394 -07 000000461 INF: FPGA: Xmit ZDACW 30342\n [Z Motor]
17-03-18 05:07:35.394 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:07:35.404 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:35.404 -07 000000461 INF: FPGA: 'ZDACW 30342' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:07:35.404 -07 000000382 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:07:35.414 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:07:35.414 -07 000000626 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:35.414 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:35.414 -07 000000626 INF: Y Motor: Moving 1333 steps0
17-03-18 05:07:35.414 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:35.424 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:35.424 -07 000000608 INF: FPGA: Recv ZDACR 30342
17-03-18 05:07:35.434 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:35.434 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:07:35.434 -07 000000461 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:07:35.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:07:35.574 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:07:35.574 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:35.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:07:35.574 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:07:35.574 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:35.574 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:35.574 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:07:35.574 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:35.584 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:07:35.614 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:35.614 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:07:35.804 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:07:35.804 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:07:35.844 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:35.854 -07 000000461 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:07:35.854 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:07:35.854 -07 000000626 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:35.854 -07 000000626 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:07:35.854 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.833 mm, average velocity = 2.093 mm/sec
17-03-18 05:07:36.734 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:36.804 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:36.804 -07 000000480 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:07:36.814 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:36.814 -07 000000626 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:36.844 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:36.844 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:07:36.844 -07 000000626 INF: Y Motor: Moved to 60.7319 after 1458 ms (table move)
17-03-18 05:07:36.844 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138897 mm (DAC = 30342)
17-03-18 05:07:36.844 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.854 -07 000000625 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:07:36.854 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:36.854 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.854 -07 000000569 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:07:36.864 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:36.864 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.864 -07 000000447 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:07:36.874 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.874 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.874 -07 000000579 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:07:36.884 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.884 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.884 -07 000000618 INF: FPGA: Recv ZSGSRD 30904
17-03-18 05:07:36.894 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.894 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.894 -07 000000382 INF: FPGA: Recv ZSGSRD 30903
17-03-18 05:07:36.904 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.904 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.904 -07 000000501 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:07:36.914 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.914 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.914 -07 000000461 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:07:36.924 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.924 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.924 -07 000000625 INF: FPGA: Recv ZSGSRD 30919
17-03-18 05:07:36.934 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.934 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:36.934 -07 000000618 INF: FPGA: Recv ZSGSRD 30913
17-03-18 05:07:36.944 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.944 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:36.944 -07 000000382 INF: FPGA: Recv ZPIEZORD 26599
17-03-18 05:07:36.954 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:36.954 -07 000000479 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.5 V.
17-03-18 05:07:36.954 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30911 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30903 (-138.1 uncal um), Max = 30919 (-138.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:07:36.954 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30911, posNoise = 8, negNoise = 8
17-03-18 05:07:36.954 -07 000000479 INF: Z Motor: After move to -0.138897, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:36.954 -07 000000479 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:07:36.954 -07 000000479 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:37.004 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:07:37.004 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:37.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:37.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:37.004 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:37.004 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:37.004 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:37.004 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:37.004 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:37.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:37.014 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:37.014 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:37.024 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:07:37.024 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:07:37.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:37.074 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:37.084 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.000345,
17-03-18 05:07:37.374 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:37.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:37.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:37.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 05:07:37.414 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:37.414 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:37.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:07:37.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:07:37.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:37.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:37.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:07:37.514 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:37.514 -07 000000455 INF: Autofocus start
17-03-18 05:07:37.514 -07 000000455 INF: MeasureProfile start
17-03-18 05:07:37.524 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:37.524 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:37.524 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:37.524 -07 000000455 INF: MeasureProfile done
17-03-18 05:07:37.524 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:07:37.524 -07 000000455 INF: Autofocus finished
17-03-18 05:07:37.724 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:37.724 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:37.724 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138902173525108. ----------
17-03-18 05:07:37.724 -07 000000610 INF: Cycle	133	Tile	2	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:37.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28849, sync = True, waitForSettling = True)
17-03-18 05:07:37.734 -07 000000610 INF: Z Motor: Moving to -0.132062 mm, started at -0.138902 mm, distance = 6.84 um
17-03-18 05:07:37.734 -07 000000610 INF: FPGA: Xmit ZDACW 28849\n [Z Motor]
17-03-18 05:07:37.734 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:07:37.744 -07 000000610 INF: FPGA: 'ZDACW 28849' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:37.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:37.744 -07 000000626 INF: FPGA: Recv ZDACR 28849
17-03-18 05:07:37.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:37.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.904 -07 000000608 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:07:37.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:37.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.914 -07 000000581 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:07:37.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.924 -07 000000625 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:07:37.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.934 -07 000000512 INF: FPGA: Recv ZSGSRD 29840
17-03-18 05:07:37.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.944 -07 000000424 INF: FPGA: Recv ZSGSRD 29841
17-03-18 05:07:37.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:07:37.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.964 -07 000000618 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:07:37.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.974 -07 000000626 INF: FPGA: Recv ZSGSRD 29839
17-03-18 05:07:37.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.984 -07 000000447 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:07:37.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:37.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:37.994 -07 000000501 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:07:38.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:38.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:38.004 -07 000000461 INF: FPGA: Recv ZPIEZORD 25227
17-03-18 05:07:38.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:38.014 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.1 V.
17-03-18 05:07:38.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29847 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29839 (-131.2 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:07:38.014 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29847, posNoise = 8, negNoise = 8
17-03-18 05:07:38.014 -07 000000610 INF: Z Motor: After move to -0.132062, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:38.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:07:38.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:38.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:38.014 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:38.014 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:38.014 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:38.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:38.014 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:38.014 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:38.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:38.014 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:38.014 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:38.014 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:38.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:38.024 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:38.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:38.024 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:38.034 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:07:38.034 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:07:38.034 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:07:38.034 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:07:38.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29026 150\n [Camera]
17-03-18 05:07:38.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:38.674 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:38.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:38.674 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:38.674 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:38.674 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:07:38.674 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:38.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:38.674 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:38.794 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:38.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) start.
17-03-18 05:07:38.864 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29026 817
17-03-18 05:07:39.014 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:39.064 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:07:39.064 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:07:39.064 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:39.074 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:39.074 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:07:39.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:07:39.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:07:39.194 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:39.194 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:39.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 05:07:39.224 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:39.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:39.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:39.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:39.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:39.224 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:39.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:39.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:07:39.234 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:39.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:07:39.414 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:39.414 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:39.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29026 150' command took 2 ms to send, 1366 ms to get response, and 1375 ms overall
17-03-18 05:07:39.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:39.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132066811806274. ------
17-03-18 05:07:39.424 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13895 mm
17-03-18 05:07:39.424 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:39.424 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:39.424 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:39.424 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:07:39.424 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:07:39.424 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30353, sync = True, waitForSettling = False)
17-03-18 05:07:39.424 -07 000000455 INF: Z Motor: Moving to -0.138947 mm, started at -0.132067 mm, distance = -6.88 um
17-03-18 05:07:39.434 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:39.434 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:39.434 -07 000000581 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:07:39.444 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:07:39.444 -07 000000424 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:39.444 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:39.444 -07 000000424 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:07:39.444 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:39.454 -07 000000455 INF: FPGA: Xmit ZDACW 30353\n [Z Motor]
17-03-18 05:07:39.454 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:07:39.464 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:39.464 -07 000000455 INF: FPGA: 'ZDACW 30353' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:07:39.474 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:39.474 -07 000000581 INF: FPGA: Recv ZDACR 30353
17-03-18 05:07:39.484 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:07:39.484 -07 000000455 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:07:39.634 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:07:39.634 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:07:39.634 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:39.634 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:07:39.634 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:07:39.634 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:39.634 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:39.634 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:07:39.634 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:39.644 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:39.644 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:07:39.644 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:07:39.834 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:07:39.834 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:07:39.884 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:39.894 -07 000000581 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:07:39.894 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:39.894 -07 000000424 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:39.894 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:07:39.894 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-18 05:07:40.844 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:40.844 -07 000000447 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:07:40.854 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.854 -07 000000424 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:40.884 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:40.884 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:40.884 -07 000000424 INF: Y Motor: Moved to 61.5625 after 1454 ms (table move)
17-03-18 05:07:40.884 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138947 mm (DAC = 30353)
17-03-18 05:07:40.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.884 -07 000000461 INF: FPGA: Recv ZSGSRD 30926
17-03-18 05:07:40.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:40.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.894 -07 000000569 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:07:40.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:07:40.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.914 -07 000000626 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:07:40.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.924 -07 000000455 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:07:40.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.934 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.934 -07 000000382 INF: FPGA: Recv ZSGSRD 30913
17-03-18 05:07:40.944 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.944 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.944 -07 000000581 INF: FPGA: Recv ZSGSRD 30915
17-03-18 05:07:40.954 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.954 -07 000000424 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:07:40.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.964 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.964 -07 000000608 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:07:40.974 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.974 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:40.974 -07 000000569 INF: FPGA: Recv ZSGSRD 30925
17-03-18 05:07:40.984 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.984 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:40.984 -07 000000625 INF: FPGA: Recv ZPIEZORD 26689
17-03-18 05:07:40.994 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:40.994 -07 000000501 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.3 V.
17-03-18 05:07:40.994 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30920 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30913 (-138.1 uncal um), Max = 30926 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:40.994 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30920, posNoise = 6, negNoise = 7
17-03-18 05:07:40.994 -07 000000501 INF: Z Motor: After move to -0.138947, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:40.994 -07 000000501 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:07:40.994 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:41.044 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:07:41.044 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:41.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:41.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:41.044 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:41.044 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:41.044 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:41.044 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:41.044 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:41.044 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:41.054 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:41.054 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:41.064 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:07:41.064 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:07:41.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:41.114 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:41.414 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:41.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:41.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:41.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 05:07:41.454 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:41.454 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:41.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:07:41.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:07:41.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:41.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:41.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 05:07:41.554 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:41.554 -07 000000569 INF: Autofocus start
17-03-18 05:07:41.554 -07 000000569 INF: MeasureProfile start
17-03-18 05:07:41.554 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:41.564 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:41.564 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:41.564 -07 000000569 INF: MeasureProfile done
17-03-18 05:07:41.564 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:07:41.564 -07 000000569 INF: Autofocus finished
17-03-18 05:07:41.734 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:41.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:41.764 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:41.764 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:41.764 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138959991434384. ----------
17-03-18 05:07:41.764 -07 000000610 INF: Cycle	133	Tile	3	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:41.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28848, sync = True, waitForSettling = True)
17-03-18 05:07:41.774 -07 000000610 INF: Z Motor: Moving to -0.132058 mm, started at -0.138960 mm, distance = 6.90 um
17-03-18 05:07:41.774 -07 000000610 INF: FPGA: Xmit ZDACW 28848\n [Z Motor]
17-03-18 05:07:41.774 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:07:41.784 -07 000000610 INF: FPGA: 'ZDACW 28848' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:41.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:41.784 -07 000000479 INF: FPGA: Recv ZDACR 28848
17-03-18 05:07:41.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:41.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:41.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:41.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29839
17-03-18 05:07:41.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:41.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:41.954 -07 000000502 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:07:41.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:41.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:41.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:07:41.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:07:41.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:41.994 -07 000000382 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:07:42.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:07:42.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:42.004 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:07:42.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:42.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:42.034 -07 000000502 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:07:42.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:07:42.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:42.044 -07 000000480 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:07:42.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:42.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:42.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:07:42.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:07:42.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:42.074 -07 000000424 INF: FPGA: Recv ZSGSRD 29846
17-03-18 05:07:42.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:42.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:42.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:07:42.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:42.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:42.094 -07 000000606 INF: FPGA: Recv ZPIEZORD 25288
17-03-18 05:07:42.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:42.104 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 05:07:42.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29839 (-131.2 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:42.104 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 6, negNoise = 7
17-03-18 05:07:42.104 -07 000000610 INF: Z Motor: After move to -0.132058, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:42.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 05:07:42.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:42.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:42.104 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:42.104 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:42.104 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:42.104 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:42.104 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:42.104 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:42.104 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:42.104 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:42.104 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:42.104 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:42.104 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:42.104 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:42.114 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:42.114 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:42.114 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:07:42.114 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:07:42.114 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:07:42.114 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:42.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29024 150\n [Camera]
17-03-18 05:07:42.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:42.444 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.005817,
17-03-18 05:07:42.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:42.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:42.764 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:42.764 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:42.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:42.764 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:42.884 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:42.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:07:42.884 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:42.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) start.
17-03-18 05:07:42.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 817
17-03-18 05:07:43.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:43.254 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:07:43.254 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:07:43.254 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:43.254 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:07:43.254 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:07:43.254 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:43.264 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:43.264 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-18 05:07:43.264 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:43.264 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 05:07:43.314 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:43.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:43.314 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:43.314 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:43.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:43.314 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:43.324 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:43.324 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:07:43.324 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:43.324 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:07:43.504 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:43.504 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:43.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29024 150' command took 2 ms to send, 1364 ms to get response, and 1381 ms overall
17-03-18 05:07:43.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:43.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132060387594133. ------
17-03-18 05:07:43.504 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:43.504 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13841 mm
17-03-18 05:07:43.504 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:43.514 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:43.514 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:07:43.514 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:43.514 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:07:43.514 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:07:43.514 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30235, sync = True, waitForSettling = False)
17-03-18 05:07:43.514 -07 000000626 INF: Z Motor: Moving to -0.138407 mm, started at -0.132060 mm, distance = -6.35 um
17-03-18 05:07:43.524 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:43.524 -07 000000512 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:07:43.534 -07 000000626 INF: FPGA: Xmit ZDACW 30235\n [Z Motor]
17-03-18 05:07:43.534 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:07:43.534 -07 000000480 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:43.534 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:43.534 -07 000000480 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:07:43.534 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:07:43.544 -07 000000626 INF: FPGA: 'ZDACW 30235' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:07:43.544 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:43.544 -07 000000579 INF: FPGA: Recv ZDACR 30235
17-03-18 05:07:43.554 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:43.554 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:43.554 -07 000000626 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 05:07:43.704 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:07:43.704 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:07:43.704 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:43.704 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:43.704 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:07:43.704 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:07:43.704 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:43.714 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:43.714 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:07:43.714 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:07:43.714 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:43.714 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 05:07:43.924 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:07:43.924 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:07:43.974 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:43.984 -07 000000625 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:07:43.984 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:43.984 -07 000000480 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:43.984 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:07:43.984 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:07:44.934 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:44.934 -07 000000502 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:07:44.944 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:44.944 -07 000000480 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:44.974 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:44.974 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:44.974 -07 000000480 INF: Y Motor: Moved to 62.3940 after 1458 ms (table move)
17-03-18 05:07:44.974 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138407 mm (DAC = 30235)
17-03-18 05:07:44.974 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:44.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30842
17-03-18 05:07:44.984 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:44.984 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:44.984 -07 000000625 INF: FPGA: Recv ZSGSRD 30837
17-03-18 05:07:44.994 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:44.994 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:44.994 -07 000000606 INF: FPGA: Recv ZSGSRD 30827
17-03-18 05:07:45.004 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.004 -07 000000512 INF: FPGA: Recv ZSGSRD 30827
17-03-18 05:07:45.014 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.014 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.014 -07 000000424 INF: FPGA: Recv ZSGSRD 30833
17-03-18 05:07:45.024 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.024 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.024 -07 000000569 INF: FPGA: Recv ZSGSRD 30832
17-03-18 05:07:45.034 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.034 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.034 -07 000000424 INF: FPGA: Recv ZSGSRD 30837
17-03-18 05:07:45.044 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.044 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.044 -07 000000501 INF: FPGA: Recv ZSGSRD 30837
17-03-18 05:07:45.054 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.054 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.054 -07 000000618 INF: FPGA: Recv ZSGSRD 30838
17-03-18 05:07:45.064 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.064 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:45.064 -07 000000606 INF: FPGA: Recv ZSGSRD 30835
17-03-18 05:07:45.074 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.074 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:45.074 -07 000000512 INF: FPGA: Recv ZPIEZORD 26575
17-03-18 05:07:45.084 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.084 -07 000000608 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.4 V.
17-03-18 05:07:45.084 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30834 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30836 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30827 (-137.6 uncal um), Max = 30842 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:45.084 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30834, posNoise = 8, negNoise = 7
17-03-18 05:07:45.084 -07 000000608 INF: Z Motor: After move to -0.138407, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:45.084 -07 000000608 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms
17-03-18 05:07:45.084 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:45.134 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:07:45.134 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:45.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:45.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:45.134 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:45.134 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:45.134 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:45.134 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:45.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:45.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:45.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:45.144 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:45.144 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:07:45.144 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:07:45.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:45.194 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:45.494 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:45.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:45.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:45.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 05:07:45.534 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:45.534 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:45.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:07:45.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:07:45.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:45.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:45.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:07:45.634 -07 000000626 INF: Autofocus start
17-03-18 05:07:45.634 -07 000000626 INF: MeasureProfile start
17-03-18 05:07:45.634 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:45.634 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:45.644 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:45.644 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:45.644 -07 000000626 INF: MeasureProfile done
17-03-18 05:07:45.644 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:07:45.644 -07 000000626 INF: Autofocus finished
17-03-18 05:07:45.844 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:45.844 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:45.844 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.138407509190192. ----------
17-03-18 05:07:45.844 -07 000000610 INF: Cycle	133	Tile	4	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:45.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28759, sync = True, waitForSettling = True)
17-03-18 05:07:45.854 -07 000000610 INF: Z Motor: Moving to -0.131650 mm, started at -0.138408 mm, distance = 6.76 um
17-03-18 05:07:45.854 -07 000000610 INF: FPGA: Xmit ZDACW 28759\n [Z Motor]
17-03-18 05:07:45.854 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:07:45.864 -07 000000610 INF: FPGA: 'ZDACW 28759' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:45.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:45.864 -07 000000479 INF: FPGA: Recv ZDACR 28759
17-03-18 05:07:45.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:45.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:46.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.024 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-18 05:07:46.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:46.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.034 -07 000000479 INF: FPGA: Recv ZSGSRD 29781
17-03-18 05:07:46.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.044 -07 000000618 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:07:46.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.054 -07 000000502 INF: FPGA: Recv ZSGSRD 29788
17-03-18 05:07:46.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.064 -07 000000424 INF: FPGA: Recv ZSGSRD 29783
17-03-18 05:07:46.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.074 -07 000000447 INF: FPGA: Recv ZSGSRD 29784
17-03-18 05:07:46.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29787
17-03-18 05:07:46.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.094 -07 000000608 INF: FPGA: Recv ZSGSRD 29785
17-03-18 05:07:46.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.104 -07 000000382 INF: FPGA: Recv ZSGSRD 29777
17-03-18 05:07:46.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:46.114 -07 000000618 INF: FPGA: Recv ZSGSRD 29779
17-03-18 05:07:46.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:46.124 -07 000000626 INF: FPGA: Recv ZPIEZORD 25220
17-03-18 05:07:46.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:46.134 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.0 V.
17-03-18 05:07:46.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29784 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29777 (-130.8 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:46.134 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29784, posNoise = 7, negNoise = 7
17-03-18 05:07:46.134 -07 000000610 INF: Z Motor: After move to -0.131650, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:46.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:07:46.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:46.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:46.134 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:46.134 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:46.134 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:46.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:46.134 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:46.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:46.134 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:46.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:46.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:46.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:46.144 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:46.144 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:46.144 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:46.144 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:46.154 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:07:46.154 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:46.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:07:46.154 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:46.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28936 150\n [Camera]
17-03-18 05:07:46.354 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:46.734 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:46.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:46.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:46.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:46.784 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:46.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:46.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:46.784 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:46.784 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:46.784 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:07:46.784 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:46.784 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:07:46.974 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28936 817
17-03-18 05:07:47.124 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:47.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:07:47.184 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:07:47.184 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:47.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:07:47.184 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:07:47.184 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:47.184 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:47.194 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:07:47.194 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:47.194 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:07:47.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:47.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:47.334 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:47.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:47.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:47.444 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:47.444 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:47.444 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:07:47.454 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:47.454 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:47.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:47.524 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:47.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28936 150' command took 2 ms to send, 1367 ms to get response, and 1374 ms overall
17-03-18 05:07:47.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:47.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.131662086441343. ------
17-03-18 05:07:47.534 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:47.534 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13829 mm
17-03-18 05:07:47.534 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:47.534 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:47.534 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:07:47.534 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 05:07:47.534 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30210, sync = True, waitForSettling = False)
17-03-18 05:07:47.534 -07 000000501 INF: Z Motor: Moving to -0.138293 mm, started at -0.131662 mm, distance = -6.63 um
17-03-18 05:07:47.544 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:47.544 -07 000000501 INF: FPGA: Xmit ZDACW 30210\n [Z Motor]
17-03-18 05:07:47.544 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:07:47.554 -07 000000501 INF: FPGA: 'ZDACW 30210' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:07:47.554 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:47.554 -07 000000502 INF: FPGA: Recv ZDACR 30210
17-03-18 05:07:47.564 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:47.564 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:47.564 -07 000000501 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 05:07:47.564 -07 000000467 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:07:47.574 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:07:47.574 -07 000000581 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:47.574 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:47.574 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:47.574 -07 000000581 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:07:47.584 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:47.774 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:47.774 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-18 05:07:47.804 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.015368,
17-03-18 05:07:47.844 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:07:47.844 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:07:47.844 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:47.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:07:47.844 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:07:47.844 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:47.854 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:47.854 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:47.854 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 05:07:47.854 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:07:47.954 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:07:47.954 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:07:48.004 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:48.014 -07 000000606 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:07:48.014 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:48.014 -07 000000581 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:48.014 -07 000000581 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:07:48.014 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.189 mm/sec
17-03-18 05:07:48.964 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:48.964 -07 000000447 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:07:48.974 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:48.974 -07 000000581 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:49.004 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:49.004 -07 000000581 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:49.004 -07 000000581 INF: Y Motor: Moved to 63.2222 after 1463 ms (table move)
17-03-18 05:07:49.004 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138293 mm (DAC = 30210)
17-03-18 05:07:49.004 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.004 -07 000000618 INF: FPGA: Recv ZSGSRD 30820
17-03-18 05:07:49.014 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:49.014 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30813
17-03-18 05:07:49.024 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.024 -07 000000455 INF: FPGA: Recv ZSGSRD 30816
17-03-18 05:07:49.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30821
17-03-18 05:07:49.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.044 -07 000000581 INF: FPGA: Recv ZSGSRD 30815
17-03-18 05:07:49.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.054 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.054 -07 000000618 INF: FPGA: Recv ZSGSRD 30811
17-03-18 05:07:49.064 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.064 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.064 -07 000000502 INF: FPGA: Recv ZSGSRD 30819
17-03-18 05:07:49.074 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.074 -07 000000579 INF: FPGA: Recv ZSGSRD 30822
17-03-18 05:07:49.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.084 -07 000000382 INF: FPGA: Recv ZSGSRD 30821
17-03-18 05:07:49.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:49.094 -07 000000512 INF: FPGA: Recv ZSGSRD 30817
17-03-18 05:07:49.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.104 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:49.104 -07 000000461 INF: FPGA: Recv ZPIEZORD 26588
17-03-18 05:07:49.114 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.114 -07 000000424 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.3 V.
17-03-18 05:07:49.114 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30818 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30818 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30811 (-137.5 uncal um), Max = 30822 (-137.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:49.114 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30818, posNoise = 4, negNoise = 7
17-03-18 05:07:49.114 -07 000000424 INF: Z Motor: After move to -0.138293, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:49.114 -07 000000424 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:07:49.114 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:49.164 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:07:49.164 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:49.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:49.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:49.164 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:49.164 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:49.164 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:49.164 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:49.164 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:49.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:49.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:49.174 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:49.184 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:07:49.184 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:07:49.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:49.234 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:49.534 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:49.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:49.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:49.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 05:07:49.574 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:49.574 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:49.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 05:07:49.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 05:07:49.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:49.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:07:49.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 05:07:49.674 -07 000000479 INF: Autofocus start
17-03-18 05:07:49.674 -07 000000479 INF: MeasureProfile start
17-03-18 05:07:49.674 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:49.674 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:49.684 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:49.684 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:49.684 -07 000000479 INF: MeasureProfile done
17-03-18 05:07:49.684 -07 000000479 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 05:07:49.684 -07 000000479 INF: Autofocus finished
17-03-18 05:07:49.884 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:49.884 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:49.884 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.138304721795924. ----------
17-03-18 05:07:49.884 -07 000000610 INF: Cycle	133	Tile	5	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:49.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28688, sync = True, waitForSettling = True)
17-03-18 05:07:49.894 -07 000000610 INF: Z Motor: Moving to -0.131325 mm, started at -0.138305 mm, distance = 6.98 um
17-03-18 05:07:49.894 -07 000000610 INF: FPGA: Xmit ZDACW 28688\n [Z Motor]
17-03-18 05:07:49.894 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:07:49.904 -07 000000610 INF: FPGA: 'ZDACW 28688' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:49.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:49.904 -07 000000461 INF: FPGA: Recv ZDACR 28688
17-03-18 05:07:49.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:49.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:50.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.064 -07 000000512 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:07:50.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:50.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:07:50.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.084 -07 000000479 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:07:50.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.094 -07 000000382 INF: FPGA: Recv ZSGSRD 29730
17-03-18 05:07:50.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.104 -07 000000626 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:07:50.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.114 -07 000000512 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:07:50.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.124 -07 000000581 INF: FPGA: Recv ZSGSRD 29732
17-03-18 05:07:50.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.134 -07 000000424 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:07:50.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.144 -07 000000608 INF: FPGA: Recv ZSGSRD 29730
17-03-18 05:07:50.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:50.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:07:50.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:50.164 -07 000000502 INF: FPGA: Recv ZPIEZORD 25145
17-03-18 05:07:50.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:50.174 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.1 V.
17-03-18 05:07:50.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29733 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29730 (-130.5 uncal um), Max = 29735 (-130.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:07:50.174 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29733, posNoise = 2, negNoise = 3
17-03-18 05:07:50.174 -07 000000610 INF: Z Motor: After move to -0.131325, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:50.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:07:50.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:50.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:50.174 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:50.174 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:50.174 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:50.174 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:50.174 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:50.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:50.174 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:07:50.174 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:50.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:07:50.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:50.184 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:50.184 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:50.184 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:50.184 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:50.194 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:07:50.194 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:07:50.194 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:07:50.194 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:50.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28865 150\n [Camera]
17-03-18 05:07:50.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:50.824 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:50.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:50.824 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:50.824 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:50.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:50.834 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:50.834 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:50.834 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-18 05:07:50.834 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:50.834 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:07:51.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28865 817
17-03-18 05:07:51.164 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:51.204 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:07:51.204 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:07:51.204 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:51.204 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:07:51.204 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:07:51.204 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:51.214 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:07:51.214 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:07:51.214 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:07:51.224 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:07:51.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:51.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:51.374 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:51.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:51.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:51.384 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:51.494 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:51.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:07:51.504 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:51.504 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) start.
17-03-18 05:07:51.564 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:51.564 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:51.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28865 150' command took 2 ms to send, 1369 ms to get response, and 1374 ms overall
17-03-18 05:07:51.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:51.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.131334451622114. ------
17-03-18 05:07:51.574 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:51.574 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13762 mm
17-03-18 05:07:51.574 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:51.574 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30064, sync = True, waitForSettling = False)
17-03-18 05:07:51.574 -07 000000479 INF: Z Motor: Moving to -0.137624 mm, started at -0.131334 mm, distance = -6.29 um
17-03-18 05:07:51.574 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:51.574 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:07:51.574 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 05:07:51.584 -07 000000479 INF: FPGA: Xmit ZDACW 30064\n [Z Motor]
17-03-18 05:07:51.584 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:51.584 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:07:51.594 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:51.594 -07 000000479 INF: FPGA: 'ZDACW 30064' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:07:51.594 -07 000000618 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:07:51.604 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:51.604 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:07:51.604 -07 000000626 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:51.604 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:51.604 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:07:51.614 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:51.614 -07 000000461 INF: FPGA: Recv ZDACR 30064
17-03-18 05:07:51.624 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:51.624 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:07:51.624 -07 000000479 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:07:51.734 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:51.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:51.804 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:51.804 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:07:51.884 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 575323040, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:07:51.884 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:07:51.884 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:51.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:07:51.884 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:07:51.884 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:51.894 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:51.894 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:51.894 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 05:07:51.894 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 05:07:51.994 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:07:51.994 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:07:52.044 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:52.054 -07 000000569 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:07:52.054 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:07:52.054 -07 000000626 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:52.054 -07 000000626 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:07:52.054 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.139 mm/sec
17-03-18 05:07:53.004 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:53.004 -07 000000382 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:07:53.014 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:53.014 -07 000000626 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:53.034 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:53.034 -07 000000626 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:53.034 -07 000000626 INF: Y Motor: Moved to 64.0557 after 1461 ms (table move)
17-03-18 05:07:53.044 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137624 mm (DAC = 30064)
17-03-18 05:07:53.044 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.044 -07 000000467 INF: FPGA: Recv ZSGSRD 30711
17-03-18 05:07:53.054 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:53.054 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.054 -07 000000512 INF: FPGA: Recv ZSGSRD 30715
17-03-18 05:07:53.064 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.064 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30706
17-03-18 05:07:53.074 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.074 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.074 -07 000000569 INF: FPGA: Recv ZSGSRD 30711
17-03-18 05:07:53.084 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.084 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.084 -07 000000479 INF: FPGA: Recv ZSGSRD 30709
17-03-18 05:07:53.094 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.094 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.094 -07 000000480 INF: FPGA: Recv ZSGSRD 30710
17-03-18 05:07:53.104 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.104 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.104 -07 000000424 INF: FPGA: Recv ZSGSRD 30717
17-03-18 05:07:53.114 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.114 -07 000000579 INF: FPGA: Recv ZSGSRD 30718
17-03-18 05:07:53.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.124 -07 000000626 INF: FPGA: Recv ZSGSRD 30718
17-03-18 05:07:53.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:53.134 -07 000000618 INF: FPGA: Recv ZSGSRD 30711
17-03-18 05:07:53.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.144 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:53.144 -07 000000501 INF: FPGA: Recv ZPIEZORD 26442
17-03-18 05:07:53.154 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.154 -07 000000625 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.4 V.
17-03-18 05:07:53.154 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30713 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30711 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30706 (-136.8 uncal um), Max = 30718 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:07:53.154 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30713, posNoise = 5, negNoise = 7
17-03-18 05:07:53.154 -07 000000625 INF: Z Motor: After move to -0.137624, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:53.154 -07 000000625 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:07:53.154 -07 000000625 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:53.164 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.049392,
17-03-18 05:07:53.204 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:07:53.204 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:53.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:53.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:53.204 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:53.204 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:53.204 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:53.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:53.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:53.204 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:53.214 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:53.214 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:53.224 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:07:53.224 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:07:53.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:53.274 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:53.574 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:53.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:53.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:53.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 05:07:53.614 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:53.614 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:53.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:07:53.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:07:53.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:53.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:07:53.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:07:53.714 -07 000000608 INF: Autofocus start
17-03-18 05:07:53.714 -07 000000608 INF: MeasureProfile start
17-03-18 05:07:53.714 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:53.714 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:53.724 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:53.724 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:53.724 -07 000000608 INF: MeasureProfile done
17-03-18 05:07:53.724 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:07:53.724 -07 000000608 INF: Autofocus finished
17-03-18 05:07:53.924 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:53.924 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:07:53.924 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.137630179521039. ----------
17-03-18 05:07:53.934 -07 000000610 INF: Cycle	133	Tile	6	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:53.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28588, sync = True, waitForSettling = True)
17-03-18 05:07:53.934 -07 000000610 INF: Z Motor: Moving to -0.130867 mm, started at -0.137630 mm, distance = 6.76 um
17-03-18 05:07:53.934 -07 000000610 INF: FPGA: Xmit ZDACW 28588\n [Z Motor]
17-03-18 05:07:53.934 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:07:53.944 -07 000000610 INF: FPGA: 'ZDACW 28588' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:53.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:53.944 -07 000000474 INF: FPGA: Recv ZDACR 28588
17-03-18 05:07:53.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:53.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:54.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.104 -07 000000501 INF: FPGA: Recv ZSGSRD 29663
17-03-18 05:07:54.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.114 -07 000000579 INF: FPGA: Recv ZSGSRD 29665
17-03-18 05:07:54.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.124 -07 000000455 INF: FPGA: Recv ZSGSRD 29659
17-03-18 05:07:54.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.134 -07 000000626 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:07:54.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29660
17-03-18 05:07:54.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.154 -07 000000467 INF: FPGA: Recv ZSGSRD 29659
17-03-18 05:07:54.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.164 -07 000000480 INF: FPGA: Recv ZSGSRD 29667
17-03-18 05:07:54.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.174 -07 000000618 INF: FPGA: Recv ZSGSRD 29662
17-03-18 05:07:54.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.184 -07 000000461 INF: FPGA: Recv ZSGSRD 29658
17-03-18 05:07:54.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:54.194 -07 000000455 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:07:54.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:54.204 -07 000000467 INF: FPGA: Recv ZPIEZORD 25073
17-03-18 05:07:54.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:54.214 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.1 V.
17-03-18 05:07:54.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29662 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29661 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29658 (-130.1 uncal um), Max = 29667 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:07:54.214 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29662, posNoise = 5, negNoise = 4
17-03-18 05:07:54.214 -07 000000610 INF: Z Motor: After move to -0.130867, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:54.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 05:07:54.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:54.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:54.224 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:54.224 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:54.224 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:54.224 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:54.224 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:54.224 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:54.224 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:07:54.224 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:54.224 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:54.224 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:54.224 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:07:54.224 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:54.224 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:54.224 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:54.234 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:07:54.234 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:07:54.234 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:07:54.234 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:54.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28764 150\n [Camera]
17-03-18 05:07:54.434 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:54.874 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:54.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:54.874 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:54.874 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:54.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:54.874 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:54.874 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:54.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:07:54.884 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:54.884 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) start.
17-03-18 05:07:55.064 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28764 817
17-03-18 05:07:55.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:55.254 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:07:55.254 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:07:55.254 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:55.254 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:07:55.254 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:07:55.254 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:55.254 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:07:55.254 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:07:55.254 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:07:55.264 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:07:55.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:55.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:55.424 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:55.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:55.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:55.424 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:55.424 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:55.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:07:55.434 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:55.434 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:07:55.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:07:55.614 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:55.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28764 150' command took 2 ms to send, 1363 ms to get response, and 1375 ms overall
17-03-18 05:07:55.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:55.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.130878332560049. ------
17-03-18 05:07:55.624 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:55.624 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13741 mm
17-03-18 05:07:55.624 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:55.754 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:55.754 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 05:07:55.754 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:55.764 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30017, sync = True, waitForSettling = False)
17-03-18 05:07:55.764 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:07:55.764 -07 000000455 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:07:55.764 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:55.764 -07 000000618 INF: Z Motor: Moving to -0.137409 mm, started at -0.130878 mm, distance = -6.53 um
17-03-18 05:07:55.764 -07 000000579 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:07:55.774 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:55.774 -07 000000455 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:55.774 -07 000000618 INF: FPGA: Xmit ZDACW 30017\n [Z Motor]
17-03-18 05:07:55.774 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:07:55.774 -07 000000455 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:55.774 -07 000000455 INF: Y Motor: Moving 1338 steps-14
17-03-18 05:07:55.784 -07 000000618 INF: FPGA: 'ZDACW 30017' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:07:55.784 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:55.784 -07 000000502 INF: FPGA: Recv ZDACR 30017
17-03-18 05:07:55.794 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:55.794 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:55.794 -07 000000618 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 05:07:55.804 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:07:55.804 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:07:55.804 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:55.804 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:07:55.804 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:07:55.804 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:55.814 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:55.814 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:07:55.814 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:07:55.824 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:07:55.964 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:07:55.964 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-18 05:07:56.164 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:07:56.164 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:07:56.214 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:56.214 -07 000000626 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:07:56.224 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:07:56.224 -07 000000455 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:56.224 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:07:56.224 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-18 05:07:56.734 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:07:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:07:57.174 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:57.174 -07 000000502 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:07:57.184 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:07:57.184 -07 000000455 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:57.214 -07 000000455 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:07:57.214 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:07:57.214 -07 000000455 INF: Y Motor: Moved to 64.8774 after 1450 ms (table move)
17-03-18 05:07:57.214 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137409 mm (DAC = 30017)
17-03-18 05:07:57.214 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.214 -07 000000579 INF: FPGA: Recv ZSGSRD 30681
17-03-18 05:07:57.224 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:07:57.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.224 -07 000000461 INF: FPGA: Recv ZSGSRD 30666
17-03-18 05:07:57.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.234 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.234 -07 000000502 INF: FPGA: Recv ZSGSRD 30687
17-03-18 05:07:57.244 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.244 -07 000000626 INF: FPGA: Recv ZSGSRD 30686
17-03-18 05:07:57.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30678
17-03-18 05:07:57.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.264 -07 000000579 INF: FPGA: Recv ZSGSRD 30677
17-03-18 05:07:57.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30678
17-03-18 05:07:57.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.284 -07 000000474 INF: FPGA: Recv ZSGSRD 30680
17-03-18 05:07:57.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.294 -07 000000424 INF: FPGA: Recv ZSGSRD 30675
17-03-18 05:07:57.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:57.304 -07 000000618 INF: FPGA: Recv ZSGSRD 30682
17-03-18 05:07:57.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.314 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:57.314 -07 000000479 INF: FPGA: Recv ZPIEZORD 26415
17-03-18 05:07:57.324 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:57.324 -07 000000569 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -9.4 V.
17-03-18 05:07:57.324 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30679 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30679 (-136.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30666 (-136.5 uncal um), Max = 30687 (-136.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 05:07:57.324 -07 000000569 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30679, posNoise = 8, negNoise = 13
17-03-18 05:07:57.324 -07 000000569 INF: Z Motor: After move to -0.137409, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:57.324 -07 000000569 INF: Z Motor: Settle wait time = 1453 ms, measure time = 105 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:07:57.324 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:07:57.374 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1743 ms
17-03-18 05:07:57.374 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:07:57.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:57.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:57.374 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:57.374 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:07:57.374 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:57.374 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:57.374 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:57.374 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:07:57.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:07:57.384 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:07:57.394 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:07:57.394 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:07:57.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:07:57.444 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:07:57.744 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:07:57.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:07:57.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:07:57.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:07:57.784 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:07:57.784 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:07:57.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:07:57.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:07:57.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:57.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:07:57.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:07:57.884 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:57.884 -07 000000625 INF: Autofocus start
17-03-18 05:07:57.884 -07 000000625 INF: MeasureProfile start
17-03-18 05:07:57.884 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:57.894 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:57.894 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:07:57.894 -07 000000625 INF: MeasureProfile done
17-03-18 05:07:57.894 -07 000000625 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:07:57.894 -07 000000625 INF: Autofocus finished
17-03-18 05:07:58.094 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:07:58.094 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:07:58.094 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137411756308219. ----------
17-03-18 05:07:58.104 -07 000000610 INF: Cycle	133	Tile	7	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:07:58.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28512, sync = True, waitForSettling = True)
17-03-18 05:07:58.104 -07 000000610 INF: Z Motor: Moving to -0.130520 mm, started at -0.137412 mm, distance = 6.89 um
17-03-18 05:07:58.104 -07 000000610 INF: FPGA: Xmit ZDACW 28512\n [Z Motor]
17-03-18 05:07:58.104 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:07:58.114 -07 000000610 INF: FPGA: 'ZDACW 28512' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:07:58.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:58.114 -07 000000606 INF: FPGA: Recv ZDACR 28512
17-03-18 05:07:58.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:07:58.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.274 -07 000000424 INF: FPGA: Recv ZSGSRD 29610
17-03-18 05:07:58.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.284 -07 000000569 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:07:58.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.294 -07 000000606 INF: FPGA: Recv ZSGSRD 29606
17-03-18 05:07:58.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.304 -07 000000480 INF: FPGA: Recv ZSGSRD 29611
17-03-18 05:07:58.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:07:58.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.314 -07 000000467 INF: FPGA: Recv ZSGSRD 29607
17-03-18 05:07:58.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.324 -07 000000581 INF: FPGA: Recv ZSGSRD 29605
17-03-18 05:07:58.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 7 ms overall
17-03-18 05:07:58.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.334 -07 000000447 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:07:58.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:07:58.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.344 -07 000000608 INF: FPGA: Recv ZSGSRD 29603
17-03-18 05:07:58.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.354 -07 000000480 INF: FPGA: Recv ZSGSRD 29611
17-03-18 05:07:58.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:07:58.364 -07 000000625 INF: FPGA: Recv ZSGSRD 29610
17-03-18 05:07:58.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:07:58.374 -07 000000512 INF: FPGA: Recv ZPIEZORD 25015
17-03-18 05:07:58.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:07:58.384 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -10.1 V.
17-03-18 05:07:58.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29608 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29608 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29603 (-129.7 uncal um), Max = 29614 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:07:58.384 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29608, posNoise = 6, negNoise = 5
17-03-18 05:07:58.384 -07 000000610 INF: Z Motor: After move to -0.130520, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:07:58.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:07:58.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:07:58.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:07:58.384 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:07:58.384 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:07:58.384 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:07:58.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:07:58.384 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:07:58.384 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:07:58.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:07:58.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:07:58.384 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:07:58.384 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:07:58.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:07:58.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:07:58.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:07:58.394 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:07:58.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:07:58.394 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:07:58.404 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:07:58.404 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:07:58.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28689 150\n [Camera]
17-03-18 05:07:58.524 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.031682,
17-03-18 05:07:58.604 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:07:59.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:07:59.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:07:59.034 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:59.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:07:59.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:07:59.034 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:59.034 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:59.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:07:59.044 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:59.044 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:07:59.224 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28689 818
17-03-18 05:07:59.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:07:59.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:07:59.414 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:07:59.414 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:59.414 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:07:59.414 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:07:59.414 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:59.414 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:59.414 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:07:59.424 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:59.424 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:07:59.584 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:07:59.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:07:59.584 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:07:59.584 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:07:59.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:07:59.584 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:07:59.594 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:07:59.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:07:59.594 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:07:59.594 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:07:59.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:07:59.774 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:07:59.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28689 150' command took 2 ms to send, 1367 ms to get response, and 1374 ms overall
17-03-18 05:07:59.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:07:59.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130531425104393. ------
17-03-18 05:07:59.784 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:07:59.784 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13715 mm
17-03-18 05:07:59.784 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:07:59.784 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:07:59.784 -07 000000474 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 05:07:59.784 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:07:59.784 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29961, sync = True, waitForSettling = False)
17-03-18 05:07:59.784 -07 000000512 INF: Z Motor: Moving to -0.137153 mm, started at -0.130531 mm, distance = -6.62 um
17-03-18 05:07:59.794 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:07:59.794 -07 000000512 INF: FPGA: Xmit ZDACW 29961\n [Z Motor]
17-03-18 05:07:59.794 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:07:59.804 -07 000000512 INF: FPGA: 'ZDACW 29961' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:07:59.804 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:07:59.804 -07 000000461 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:07:59.814 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:07:59.814 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:07:59.814 -07 000000474 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:07:59.814 -07 000000474 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:07:59.814 -07 000000474 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:07:59.824 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:07:59.824 -07 000000569 INF: FPGA: Recv ZDACR 29961
17-03-18 05:07:59.834 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:07:59.834 -07 000000512 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:07:59.834 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:07:59.984 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:07:59.984 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:07:59.984 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:59.984 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:07:59.984 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:07:59.984 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:07:59.984 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:59.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:07:59.984 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:07:59.994 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:08:00.014 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:00.014 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:08:00.204 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:08:00.204 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:08:00.254 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:00.264 -07 000000461 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:08:00.264 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:08:00.264 -07 000000474 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:00.264 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:08:00.264 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:08:01.214 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:01.214 -07 000000618 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:08:01.224 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:01.224 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:01.264 -07 000000474 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:01.264 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:08:01.264 -07 000000474 INF: Y Motor: Moved to 65.7129 after 1474 ms (table move)
17-03-18 05:08:01.264 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137153 mm (DAC = 29961)
17-03-18 05:08:01.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.264 -07 000000606 INF: FPGA: Recv ZSGSRD 30641
17-03-18 05:08:01.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:01.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30641
17-03-18 05:08:01.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30630
17-03-18 05:08:01.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.294 -07 000000461 INF: FPGA: Recv ZSGSRD 30634
17-03-18 05:08:01.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.304 -07 000000501 INF: FPGA: Recv ZSGSRD 30642
17-03-18 05:08:01.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.314 -07 000000424 INF: FPGA: Recv ZSGSRD 30641
17-03-18 05:08:01.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.324 -07 000000581 INF: FPGA: Recv ZSGSRD 30637
17-03-18 05:08:01.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.334 -07 000000579 INF: FPGA: Recv ZSGSRD 30639
17-03-18 05:08:01.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30645
17-03-18 05:08:01.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:01.354 -07 000000447 INF: FPGA: Recv ZSGSRD 30640
17-03-18 05:08:01.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.364 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:01.364 -07 000000424 INF: FPGA: Recv ZPIEZORD 26406
17-03-18 05:08:01.374 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:01.374 -07 000000626 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.3 V.
17-03-18 05:08:01.374 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30639 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30630 (-136.3 uncal um), Max = 30645 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:08:01.374 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30639, posNoise = 6, negNoise = 9
17-03-18 05:08:01.374 -07 000000626 INF: Z Motor: After move to -0.137153, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:01.374 -07 000000626 INF: Z Motor: Settle wait time = 1476 ms, measure time = 106 ms (allowed 150 ms), total time = 1582 ms
17-03-18 05:08:01.374 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:01.424 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 05:08:01.424 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:01.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:01.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:01.424 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:01.424 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:01.424 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:01.424 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:01.434 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:01.434 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:01.434 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:01.434 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:01.434 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:08:01.434 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:08:01.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:01.484 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:01.734 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:01.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:01.784 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:01.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:01.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:01.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:08:01.824 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:01.824 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:01.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 05:08:01.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:08:01.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:01.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:01.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:08:01.924 -07 000000569 INF: Autofocus start
17-03-18 05:08:01.924 -07 000000569 INF: MeasureProfile start
17-03-18 05:08:01.924 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:01.924 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:01.934 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:01.934 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:01.934 -07 000000569 INF: MeasureProfile done
17-03-18 05:08:01.934 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:08:01.934 -07 000000569 INF: Autofocus finished
17-03-18 05:08:02.134 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:02.134 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:02.134 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137154787822549. ----------
17-03-18 05:08:02.134 -07 000000610 INF: Cycle	133	Tile	8	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:02.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28485, sync = True, waitForSettling = True)
17-03-18 05:08:02.144 -07 000000610 INF: Z Motor: Moving to -0.130396 mm, started at -0.137155 mm, distance = 6.76 um
17-03-18 05:08:02.144 -07 000000610 INF: FPGA: Xmit ZDACW 28485\n [Z Motor]
17-03-18 05:08:02.144 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:08:02.154 -07 000000610 INF: FPGA: 'ZDACW 28485' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:02.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:02.154 -07 000000618 INF: FPGA: Recv ZDACR 28485
17-03-18 05:08:02.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29584
17-03-18 05:08:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.324 -07 000000569 INF: FPGA: Recv ZSGSRD 29591
17-03-18 05:08:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 7 ms to get response, and 17 ms overall
17-03-18 05:08:02.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.344 -07 000000382 INF: FPGA: Recv ZSGSRD 29591
17-03-18 05:08:02.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:08:02.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.344 -07 000000608 INF: FPGA: Recv ZSGSRD 29586
17-03-18 05:08:02.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.354 -07 000000479 INF: FPGA: Recv ZSGSRD 29587
17-03-18 05:08:02.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.364 -07 000000502 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:08:02.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.374 -07 000000474 INF: FPGA: Recv ZSGSRD 29586
17-03-18 05:08:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.384 -07 000000512 INF: FPGA: Recv ZSGSRD 29588
17-03-18 05:08:02.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29585
17-03-18 05:08:02.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:02.404 -07 000000569 INF: FPGA: Recv ZSGSRD 29587
17-03-18 05:08:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:02.414 -07 000000382 INF: FPGA: Recv ZPIEZORD 25031
17-03-18 05:08:02.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:02.424 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -10.0 V.
17-03-18 05:08:02.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29588 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29587 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29584 (-129.6 uncal um), Max = 29592 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:08:02.424 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29588, posNoise = 4, negNoise = 4
17-03-18 05:08:02.424 -07 000000610 INF: Z Motor: After move to -0.130396, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:02.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:08:02.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:02.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:02.424 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:02.424 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:02.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:02.424 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:02.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:02.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:08:02.424 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:02.424 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:02.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:02.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:02.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:02.434 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:02.434 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:02.434 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:02.444 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:08:02.444 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:02.444 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:08:02.444 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:02.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28662 150\n [Camera]
17-03-18 05:08:02.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:03.074 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:03.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:03.074 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:03.074 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:03.074 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:08:03.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:03.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:03.074 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:03.074 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:03.074 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:08:03.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28662 817
17-03-18 05:08:03.414 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:03.464 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:08:03.464 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:08:03.464 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:03.464 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:03.464 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:08:03.464 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:08:03.464 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:03.474 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:03.474 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:08:03.474 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:08:03.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:08:03.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:08:03.634 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:03.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:08:03.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:08:03.634 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:03.634 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:08:03.634 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:03.634 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:03.634 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:08:03.814 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:08:03.814 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:03.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28662 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-18 05:08:03.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:03.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130402940861558. ------
17-03-18 05:08:03.824 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:03.824 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13676 mm
17-03-18 05:08:03.824 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:03.824 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:08:03.824 -07 000000581 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:08:03.824 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:03.824 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29875, sync = True, waitForSettling = False)
17-03-18 05:08:03.824 -07 000000625 INF: Z Motor: Moving to -0.136759 mm, started at -0.130403 mm, distance = -6.36 um
17-03-18 05:08:03.834 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:03.834 -07 000000625 INF: FPGA: Xmit ZDACW 29875\n [Z Motor]
17-03-18 05:08:03.834 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:08:03.844 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:03.844 -07 000000625 INF: FPGA: 'ZDACW 29875' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:08:03.844 -07 000000606 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:08:03.854 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:03.854 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:08:03.854 -07 000000581 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:03.854 -07 000000581 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:03.974 -07 000000581 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:08:03.974 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:03.974 -07 000000569 INF: FPGA: Recv ZDACR 29875
17-03-18 05:08:03.984 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 05:08:03.984 -07 000000625 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-18 05:08:03.994 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:03.994 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.016692,
17-03-18 05:08:04.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:08:04.034 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:08:04.034 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:04.034 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:08:04.034 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:08:04.034 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:04.034 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:04.034 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:08:04.034 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:04.044 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:08:04.054 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:04.054 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 83 ms to get response, and 223 ms overall
17-03-18 05:08:04.364 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:08:04.364 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:08:04.414 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:04.424 -07 000000618 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:08:04.424 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:08:04.424 -07 000000581 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:04.424 -07 000000581 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:08:04.424 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 05:08:05.374 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:05.374 -07 000000461 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:08:05.384 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:05.384 -07 000000581 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:05.414 -07 000000581 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:05.414 -07 000000581 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:08:05.414 -07 000000581 INF: Y Motor: Moved to 66.5381 after 1586 ms (table move)
17-03-18 05:08:05.414 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136759 mm (DAC = 29875)
17-03-18 05:08:05.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.424 -07 000000606 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:08:05.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:08:05.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.424 -07 000000455 INF: FPGA: Recv ZSGSRD 30586
17-03-18 05:08:05.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.434 -07 000000512 INF: FPGA: Recv ZSGSRD 30575
17-03-18 05:08:05.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.444 -07 000000501 INF: FPGA: Recv ZSGSRD 30583
17-03-18 05:08:05.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.454 -07 000000502 INF: FPGA: Recv ZSGSRD 30572
17-03-18 05:08:05.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.464 -07 000000480 INF: FPGA: Recv ZSGSRD 30568
17-03-18 05:08:05.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.474 -07 000000455 INF: FPGA: Recv ZSGSRD 30579
17-03-18 05:08:05.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.484 -07 000000581 INF: FPGA: Recv ZSGSRD 30576
17-03-18 05:08:05.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.494 -07 000000606 INF: FPGA: Recv ZSGSRD 30585
17-03-18 05:08:05.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.504 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:05.504 -07 000000569 INF: FPGA: Recv ZSGSRD 30581
17-03-18 05:08:05.514 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.514 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:05.514 -07 000000512 INF: FPGA: Recv ZPIEZORD 26358
17-03-18 05:08:05.524 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:05.524 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.3 V.
17-03-18 05:08:05.524 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30578 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30580 (-136.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30568 (-135.9 uncal um), Max = 30586 (-136.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:08:05.524 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30578, posNoise = 8, negNoise = 10
17-03-18 05:08:05.524 -07 000000382 INF: Z Motor: After move to -0.136759, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:05.524 -07 000000382 INF: Z Motor: Settle wait time = 1589 ms, measure time = 103 ms (allowed 150 ms), total time = 1692 ms
17-03-18 05:08:05.524 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:05.574 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1746 ms
17-03-18 05:08:05.574 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:05.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:05.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:05.574 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:05.574 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:05.574 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:05.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:05.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:05.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:05.584 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:08:05.584 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:05.594 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:08:05.594 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:08:05.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:05.644 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:05.944 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:05.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:05.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:05.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:05.984 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:05.984 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:05.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:08:06.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:08:06.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:06.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:06.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:08:06.084 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:06.084 -07 000000579 INF: Autofocus start
17-03-18 05:08:06.084 -07 000000579 INF: MeasureProfile start
17-03-18 05:08:06.094 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:06.094 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:08:06.094 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:06.104 -07 000000579 INF: MeasureProfile done
17-03-18 05:08:06.104 -07 000000579 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:08:06.104 -07 000000579 INF: Autofocus finished
17-03-18 05:08:06.294 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:06.294 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:08:06.294 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.136762910881902. ----------
17-03-18 05:08:06.304 -07 000000610 INF: Cycle	133	Tile	9	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:06.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28399, sync = True, waitForSettling = True)
17-03-18 05:08:06.304 -07 000000610 INF: Z Motor: Moving to -0.130002 mm, started at -0.136763 mm, distance = 6.76 um
17-03-18 05:08:06.304 -07 000000610 INF: FPGA: Xmit ZDACW 28399\n [Z Motor]
17-03-18 05:08:06.304 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:08:06.314 -07 000000610 INF: FPGA: 'ZDACW 28399' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:06.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:06.314 -07 000000480 INF: FPGA: Recv ZDACR 28399
17-03-18 05:08:06.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:06.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29528
17-03-18 05:08:06.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:06.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.484 -07 000000618 INF: FPGA: Recv ZSGSRD 29528
17-03-18 05:08:06.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.494 -07 000000626 INF: FPGA: Recv ZSGSRD 29527
17-03-18 05:08:06.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.504 -07 000000382 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:08:06.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:08:06.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.524 -07 000000502 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:08:06.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.534 -07 000000579 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:08:06.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.544 -07 000000455 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:08:06.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29527
17-03-18 05:08:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:06.564 -07 000000569 INF: FPGA: Recv ZSGSRD 29529
17-03-18 05:08:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:06.574 -07 000000581 INF: FPGA: Recv ZPIEZORD 24969
17-03-18 05:08:06.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:06.584 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.0 V.
17-03-18 05:08:06.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29526 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29527 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29522 (-129.2 uncal um), Max = 29530 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:08:06.584 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29526, posNoise = 4, negNoise = 4
17-03-18 05:08:06.584 -07 000000610 INF: Z Motor: After move to -0.130002, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:06.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:08:06.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:06.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:06.584 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:06.584 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:06.584 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:06.584 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:06.584 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:06.584 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:06.584 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:06.584 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:06.584 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:06.584 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:06.594 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:06.594 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:06.594 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:06.594 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:06.604 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:08:06.604 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:06.604 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:08:06.604 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:06.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28576 150\n [Camera]
17-03-18 05:08:06.734 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:06.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:06.804 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:07.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:07.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:07.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:07.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:07.244 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:07.244 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:07.244 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:07.244 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:07.244 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:07.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:07.424 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28576 817
17-03-18 05:08:07.574 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:07.624 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:08:07.624 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:08:07.624 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:07.624 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:08:07.624 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:08:07.624 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:07.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:07.624 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:07.624 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:08:07.634 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:08:07.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:07.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:07.784 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:07.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:07.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:07.794 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:07.794 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:07.794 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:08:07.794 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:07.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:08:07.974 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:08:07.974 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:07.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28576 150' command took 2 ms to send, 1369 ms to get response, and 1374 ms overall
17-03-18 05:08:07.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:07.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130004639708769. ------
17-03-18 05:08:08.104 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:08.104 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13677 mm
17-03-18 05:08:08.104 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:08.104 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:08.104 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:08:08.104 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29877, sync = True, waitForSettling = False)
17-03-18 05:08:08.104 -07 000000581 INF: Z Motor: Moving to -0.136768 mm, started at -0.130005 mm, distance = -6.76 um
17-03-18 05:08:08.104 -07 000000382 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 05:08:08.114 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:08.114 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:08.114 -07 000000455 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:08:08.124 -07 000000581 INF: FPGA: Xmit ZDACW 29877\n [Z Motor]
17-03-18 05:08:08.124 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:08:08.124 -07 000000382 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:08.124 -07 000000382 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:08.124 -07 000000382 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:08:08.124 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:08:08.134 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:08.134 -07 000000581 INF: FPGA: 'ZDACW 29877' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:08:08.144 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:08.154 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:08.154 -07 000000501 INF: FPGA: Recv ZDACR 29877
17-03-18 05:08:08.164 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:08:08.164 -07 000000581 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:08:08.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:08:08.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:08:08.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:08.184 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:08:08.184 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:08:08.184 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:08.184 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:08.184 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:08.184 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:08:08.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:08:08.334 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:08.334 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 05:08:08.514 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:08:08.514 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:08:08.564 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:08.564 -07 000000467 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:08:08.574 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:08.574 -07 000000382 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:08.574 -07 000000382 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:08:08.574 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 05:08:09.364 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.015368,
17-03-18 05:08:09.524 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:09.524 -07 000000467 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:08:09.534 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.534 -07 000000382 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:09.564 -07 000000382 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:09.564 -07 000000382 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:08:09.564 -07 000000382 INF: Y Motor: Moved to 67.3711 after 1457 ms (table move)
17-03-18 05:08:09.564 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136768 mm (DAC = 29877)
17-03-18 05:08:09.564 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.564 -07 000000569 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:08:09.574 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:09.574 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.574 -07 000000467 INF: FPGA: Recv ZSGSRD 30579
17-03-18 05:08:09.584 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.584 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.584 -07 000000581 INF: FPGA: Recv ZSGSRD 30572
17-03-18 05:08:09.594 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.594 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.594 -07 000000606 INF: FPGA: Recv ZSGSRD 30577
17-03-18 05:08:09.604 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.604 -07 000000424 INF: FPGA: Recv ZSGSRD 30572
17-03-18 05:08:09.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.614 -07 000000618 INF: FPGA: Recv ZSGSRD 30579
17-03-18 05:08:09.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.624 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.624 -07 000000461 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:08:09.634 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.634 -07 000000581 INF: FPGA: Recv ZSGSRD 30583
17-03-18 05:08:09.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.644 -07 000000382 INF: FPGA: Recv ZSGSRD 30579
17-03-18 05:08:09.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:09.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:09.654 -07 000000608 INF: FPGA: Recv ZSGSRD 30572
17-03-18 05:08:09.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.664 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:09.664 -07 000000474 INF: FPGA: Recv ZPIEZORD 26378
17-03-18 05:08:09.674 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:09.674 -07 000000447 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.2 V.
17-03-18 05:08:09.674 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30577 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30579 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30572 (-135.9 uncal um), Max = 30583 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:08:09.674 -07 000000447 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30577, posNoise = 6, negNoise = 5
17-03-18 05:08:09.674 -07 000000447 INF: Z Motor: After move to -0.136768, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:09.674 -07 000000447 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:08:09.674 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:09.724 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:08:09.724 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:09.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:09.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:09.724 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:09.724 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:09.734 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:09.734 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:09.734 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:09.734 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:09.734 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:08:09.734 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:09.744 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:08:09.744 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:08:09.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:09.794 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:10.094 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:10.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:10.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:10.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:10.134 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:10.134 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:10.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 05:08:10.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 05:08:10.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:10.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:10.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 05:08:10.234 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:10.234 -07 000000501 INF: Autofocus start
17-03-18 05:08:10.234 -07 000000501 INF: MeasureProfile start
17-03-18 05:08:10.234 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:10.244 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:10.244 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:10.244 -07 000000501 INF: MeasureProfile done
17-03-18 05:08:10.244 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:08:10.244 -07 000000501 INF: Autofocus finished
17-03-18 05:08:10.444 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:10.444 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:10.444 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13675648666976. ----------
17-03-18 05:08:10.444 -07 000000610 INF: Cycle	133	Tile	10	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:10.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28384, sync = True, waitForSettling = True)
17-03-18 05:08:10.454 -07 000000610 INF: Z Motor: Moving to -0.129934 mm, started at -0.136756 mm, distance = 6.82 um
17-03-18 05:08:10.454 -07 000000610 INF: FPGA: Xmit ZDACW 28384\n [Z Motor]
17-03-18 05:08:10.454 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:08:10.464 -07 000000610 INF: FPGA: 'ZDACW 28384' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:10.464 -07 000000474 INF: FPGA: Recv ZDACR 28384
17-03-18 05:08:10.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:10.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:08:10.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:10.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.634 -07 000000455 INF: FPGA: Recv ZSGSRD 29522
17-03-18 05:08:10.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.644 -07 000000512 INF: FPGA: Recv ZSGSRD 29509
17-03-18 05:08:10.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.654 -07 000000618 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:08:10.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.664 -07 000000474 INF: FPGA: Recv ZSGSRD 29516
17-03-18 05:08:10.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.674 -07 000000424 INF: FPGA: Recv ZSGSRD 29516
17-03-18 05:08:10.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29523
17-03-18 05:08:10.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.694 -07 000000512 INF: FPGA: Recv ZSGSRD 29509
17-03-18 05:08:10.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29515
17-03-18 05:08:10.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:10.714 -07 000000581 INF: FPGA: Recv ZSGSRD 29514
17-03-18 05:08:10.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:10.724 -07 000000424 INF: FPGA: Recv ZPIEZORD 24969
17-03-18 05:08:10.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:10.734 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -10.0 V.
17-03-18 05:08:10.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29514 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29514 (-129.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29523 (-129.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:08:10.734 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29514, posNoise = 9, negNoise = 6
17-03-18 05:08:10.734 -07 000000610 INF: Z Motor: After move to -0.129934, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:10.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:08:10.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:10.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:10.734 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:10.734 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:10.734 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:10.734 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:10.734 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:10.734 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:10.734 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:10.734 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:10.734 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:08:10.734 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:10.744 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:10.744 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:10.744 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:10.744 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:10.754 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:08:10.754 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:10.754 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:08:10.754 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:08:10.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28561 150\n [Camera]
17-03-18 05:08:10.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:08:11.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:11.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:11.384 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:11.394 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:11.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:11.394 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:11.394 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:11.394 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:11.394 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:11.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:11.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28561 817
17-03-18 05:08:11.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:11.734 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:11.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:08:11.794 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:08:11.794 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:11.794 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:08:11.794 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:08:11.794 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:11.794 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:11.794 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:08:11.794 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:11.804 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:08:11.934 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:11.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:11.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:11.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:11.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:11.944 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:11.944 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:11.944 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:08:11.944 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:11.944 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:08:12.124 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:12.134 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:12.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28561 150' command took 2 ms to send, 1370 ms to get response, and 1375 ms overall
17-03-18 05:08:12.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:12.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.129927549163068. ------
17-03-18 05:08:12.134 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13641 mm
17-03-18 05:08:12.134 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:12.134 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:12.134 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:08:12.134 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:08:12.134 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29798, sync = True, waitForSettling = False)
17-03-18 05:08:12.134 -07 000000447 INF: Z Motor: Moving to -0.136407 mm, started at -0.129928 mm, distance = -6.48 um
17-03-18 05:08:12.144 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:12.144 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:12.144 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:12.144 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:08:12.154 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:08:12.154 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:12.154 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:12.154 -07 000000569 INF: Y Motor: Moving 1346 steps-25
17-03-18 05:08:12.154 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:12.164 -07 000000447 INF: FPGA: Xmit ZDACW 29798\n [Z Motor]
17-03-18 05:08:12.164 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:08:12.174 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:12.174 -07 000000447 INF: FPGA: 'ZDACW 29798' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:08:12.184 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:12.184 -07 000000382 INF: FPGA: Recv ZDACR 29798
17-03-18 05:08:12.194 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:12.194 -07 000000447 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:08:12.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:08:12.344 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:08:12.344 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:12.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:08:12.344 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:08:12.344 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:12.354 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:12.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:08:12.354 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:12.354 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:12.354 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 214 ms overall
17-03-18 05:08:12.354 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:08:12.544 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:08:12.544 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:08:12.594 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:12.604 -07 000000618 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:08:12.604 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:08:12.604 -07 000000569 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:12.604 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:08:12.604 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 05:08:13.554 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:13.554 -07 000000626 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:08:13.564 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:13.564 -07 000000569 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:13.594 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:13.594 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:13.594 -07 000000569 INF: Y Motor: Moved to 68.2041 after 1453 ms (table move)
17-03-18 05:08:13.594 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136407 mm (DAC = 29798)
17-03-18 05:08:13.594 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.594 -07 000000608 INF: FPGA: Recv ZSGSRD 30532
17-03-18 05:08:13.604 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:13.604 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.604 -07 000000625 INF: FPGA: Recv ZSGSRD 30524
17-03-18 05:08:13.614 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.614 -07 000000512 INF: FPGA: Recv ZSGSRD 30519
17-03-18 05:08:13.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.624 -07 000000502 INF: FPGA: Recv ZSGSRD 30519
17-03-18 05:08:13.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.634 -07 000000455 INF: FPGA: Recv ZSGSRD 30520
17-03-18 05:08:13.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.644 -07 000000608 INF: FPGA: Recv ZSGSRD 30521
17-03-18 05:08:13.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.654 -07 000000474 INF: FPGA: Recv ZSGSRD 30523
17-03-18 05:08:13.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.664 -07 000000512 INF: FPGA: Recv ZSGSRD 30525
17-03-18 05:08:13.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.674 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.674 -07 000000480 INF: FPGA: Recv ZSGSRD 30527
17-03-18 05:08:13.684 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.684 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:13.684 -07 000000625 INF: FPGA: Recv ZSGSRD 30525
17-03-18 05:08:13.694 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.694 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:13.694 -07 000000618 INF: FPGA: Recv ZPIEZORD 26321
17-03-18 05:08:13.704 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:13.704 -07 000000581 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V.
17-03-18 05:08:13.704 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30524 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30519 (-135.6 uncal um), Max = 30532 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:08:13.704 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30524, posNoise = 8, negNoise = 5
17-03-18 05:08:13.704 -07 000000581 INF: Z Motor: After move to -0.136407, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:13.704 -07 000000581 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:08:13.704 -07 000000581 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:13.754 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 05:08:13.754 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:13.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:13.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:13.754 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:13.754 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:13.754 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:13.754 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:13.764 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:13.764 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:13.764 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:13.764 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:13.774 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:08:13.774 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:08:13.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:13.824 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:14.124 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:14.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:14.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:14.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:08:14.164 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:14.164 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:14.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:08:14.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:08:14.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:14.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:08:14.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:08:14.264 -07 000000569 INF: Autofocus start
17-03-18 05:08:14.264 -07 000000569 INF: MeasureProfile start
17-03-18 05:08:14.264 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:14.264 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:14.274 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:14.274 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:14.274 -07 000000569 INF: MeasureProfile done
17-03-18 05:08:14.274 -07 000000569 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:08:14.274 -07 000000569 INF: Autofocus finished
17-03-18 05:08:14.474 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:14.474 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:14.474 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136416003426246. ----------
17-03-18 05:08:14.474 -07 000000610 INF: Cycle	133	Tile	11	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:14.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28339, sync = True, waitForSettling = True)
17-03-18 05:08:14.484 -07 000000610 INF: Z Motor: Moving to -0.129728 mm, started at -0.136416 mm, distance = 6.69 um
17-03-18 05:08:14.484 -07 000000610 INF: FPGA: Xmit ZDACW 28339\n [Z Motor]
17-03-18 05:08:14.484 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:08:14.494 -07 000000610 INF: FPGA: 'ZDACW 28339' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:14.494 -07 000000618 INF: FPGA: Recv ZDACR 28339
17-03-18 05:08:14.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:14.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.654 -07 000000424 INF: FPGA: Recv ZSGSRD 29484
17-03-18 05:08:14.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:14.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.664 -07 000000512 INF: FPGA: Recv ZSGSRD 29484
17-03-18 05:08:14.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.674 -07 000000474 INF: FPGA: Recv ZSGSRD 29478
17-03-18 05:08:14.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.684 -07 000000461 INF: FPGA: Recv ZSGSRD 29479
17-03-18 05:08:14.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.694 -07 000000579 INF: FPGA: Recv ZSGSRD 29487
17-03-18 05:08:14.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.704 -07 000000424 INF: FPGA: Recv ZSGSRD 29487
17-03-18 05:08:14.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.724 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.001704,
17-03-18 05:08:14.724 -07 000000579 INF: FPGA: Recv ZSGSRD 29493
17-03-18 05:08:14.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:14.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.754 -07 000000625 INF: FPGA: Recv ZSGSRD 29481
17-03-18 05:08:14.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:08:14.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.764 -07 000000480 INF: FPGA: Recv ZSGSRD 29485
17-03-18 05:08:14.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:14.784 -07 000000626 INF: FPGA: Recv ZSGSRD 29483
17-03-18 05:08:14.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:14.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:14.794 -07 000000581 INF: FPGA: Recv ZPIEZORD 24947
17-03-18 05:08:14.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:14.804 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.9 V.
17-03-18 05:08:14.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29484 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29478 (-128.9 uncal um), Max = 29493 (-129.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:08:14.804 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 9, negNoise = 6
17-03-18 05:08:14.804 -07 000000610 INF: Z Motor: After move to -0.129728, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:14.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-18 05:08:14.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:14.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:14.804 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:14.804 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:14.804 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:14.804 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:14.804 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:14.804 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:14.804 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:14.804 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:14.804 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:14.804 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:14.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:08:14.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:14.814 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:14.814 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:14.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:08:14.814 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:08:14.824 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:08:14.824 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:14.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28516 150\n [Camera]
17-03-18 05:08:15.024 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:15.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:08:15.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:08:15.464 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:15.464 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:15.464 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:08:15.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:08:15.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:08:15.464 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:15.464 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:15.464 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:08:15.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28516 817
17-03-18 05:08:15.794 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:15.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:08:15.834 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:08:15.834 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:15.844 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:08:15.844 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:08:15.844 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:15.844 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:15.844 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:15.844 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:08:15.854 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:08:16.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:16.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:16.004 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:16.004 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:16.004 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:08:16.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:16.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:16.014 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:16.014 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:16.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:08:16.194 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:16.194 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:16.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28516 150' command took 2 ms to send, 1369 ms to get response, and 1375 ms overall
17-03-18 05:08:16.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:16.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129734822798815. ------
17-03-18 05:08:16.314 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:16.314 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13642 mm
17-03-18 05:08:16.314 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:16.324 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:16.324 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:08:16.324 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:08:16.324 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:08:16.324 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29801, sync = True, waitForSettling = False)
17-03-18 05:08:16.324 -07 000000461 INF: Z Motor: Moving to -0.136420 mm, started at -0.129735 mm, distance = -6.69 um
17-03-18 05:08:16.324 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:16.334 -07 000000461 INF: FPGA: Xmit ZDACW 29801\n [Z Motor]
17-03-18 05:08:16.334 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:08:16.344 -07 000000461 INF: FPGA: 'ZDACW 29801' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:08:16.344 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:16.344 -07 000000467 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:08:16.354 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:08:16.354 -07 000000626 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:16.354 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:16.354 -07 000000626 INF: Y Motor: Moving 1342 steps-17
17-03-18 05:08:16.354 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:16.354 -07 000000569 INF: FPGA: Recv ZDACR 29801
17-03-18 05:08:16.364 -07 000000461 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:16.364 -07 000000461 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:08:16.364 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:16.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:08:16.404 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:08:16.404 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:16.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:08:16.404 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:08:16.404 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:16.414 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:16.414 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:08:16.414 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:08:16.414 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:08:16.524 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:16.524 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 207 ms overall
17-03-18 05:08:16.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:16.734 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:08:16.734 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 05:08:16.784 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:16.794 -07 000000618 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:08:16.794 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:08:16.794 -07 000000626 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:16.794 -07 000000626 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 05:08:16.794 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-18 05:08:17.744 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:17.744 -07 000000480 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:08:17.754 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:17.754 -07 000000626 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:17.784 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:17.784 -07 000000626 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:17.784 -07 000000626 INF: Y Motor: Moved to 69.0259 after 1458 ms (table move)
17-03-18 05:08:17.784 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136420 mm (DAC = 29801)
17-03-18 05:08:17.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.784 -07 000000447 INF: FPGA: Recv ZSGSRD 30529
17-03-18 05:08:17.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:17.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.794 -07 000000382 INF: FPGA: Recv ZSGSRD 30522
17-03-18 05:08:17.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30524
17-03-18 05:08:17.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30519
17-03-18 05:08:17.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.824 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30519
17-03-18 05:08:17.834 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.834 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30523
17-03-18 05:08:17.844 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.844 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30525
17-03-18 05:08:17.854 -07 000000581 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.854 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.854 -07 000000608 INF: FPGA: Recv ZSGSRD 30531
17-03-18 05:08:17.864 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.864 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.864 -07 000000512 INF: FPGA: Recv ZSGSRD 30529
17-03-18 05:08:17.874 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.874 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:17.874 -07 000000467 INF: FPGA: Recv ZSGSRD 30529
17-03-18 05:08:17.884 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.884 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:17.884 -07 000000474 INF: FPGA: Recv ZPIEZORD 26343
17-03-18 05:08:17.894 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:17.894 -07 000000581 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V.
17-03-18 05:08:17.894 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30525 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30519 (-135.6 uncal um), Max = 30531 (-135.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:08:17.894 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30525, posNoise = 6, negNoise = 6
17-03-18 05:08:17.894 -07 000000581 INF: Z Motor: After move to -0.136420, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:17.894 -07 000000581 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:08:17.894 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:17.944 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:08:17.944 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:17.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:17.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:17.944 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:17.944 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:17.944 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:17.944 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:17.944 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:17.944 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:17.954 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:08:17.954 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:17.964 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:08:17.964 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:08:17.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:18.014 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:18.314 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:18.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:18.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:18.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:18.354 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:18.354 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:18.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:08:18.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:08:18.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:18.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:18.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:08:18.454 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:18.454 -07 000000618 INF: Autofocus start
17-03-18 05:08:18.454 -07 000000618 INF: MeasureProfile start
17-03-18 05:08:18.454 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:18.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:18.464 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:18.464 -07 000000618 INF: MeasureProfile done
17-03-18 05:08:18.464 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:08:18.464 -07 000000618 INF: Autofocus finished
17-03-18 05:08:18.664 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:18.664 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:18.664 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136422427638388. ----------
17-03-18 05:08:18.664 -07 000000610 INF: Cycle	133	Tile	12	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:18.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28296, sync = True, waitForSettling = True)
17-03-18 05:08:18.674 -07 000000610 INF: Z Motor: Moving to -0.129531 mm, started at -0.136422 mm, distance = 6.89 um
17-03-18 05:08:18.674 -07 000000610 INF: FPGA: Xmit ZDACW 28296\n [Z Motor]
17-03-18 05:08:18.674 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:08:18.684 -07 000000610 INF: FPGA: 'ZDACW 28296' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:18.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:18.684 -07 000000502 INF: FPGA: Recv ZDACR 28296
17-03-18 05:08:18.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.844 -07 000000625 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:08:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:18.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.854 -07 000000608 INF: FPGA: Recv ZSGSRD 29453
17-03-18 05:08:18.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:08:18.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.874 -07 000000606 INF: FPGA: Recv ZSGSRD 29448
17-03-18 05:08:18.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.884 -07 000000455 INF: FPGA: Recv ZSGSRD 29453
17-03-18 05:08:18.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.894 -07 000000569 INF: FPGA: Recv ZSGSRD 29455
17-03-18 05:08:18.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.904 -07 000000581 INF: FPGA: Recv ZSGSRD 29455
17-03-18 05:08:18.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.914 -07 000000382 INF: FPGA: Recv ZSGSRD 29449
17-03-18 05:08:18.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29454
17-03-18 05:08:18.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:18.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:08:18.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:18.944 -07 000000479 INF: FPGA: Recv ZPIEZORD 24914
17-03-18 05:08:18.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:18.954 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -10.0 V.
17-03-18 05:08:18.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29454 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29454 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29448 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:08:18.954 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29454, posNoise = 2, negNoise = 6
17-03-18 05:08:18.954 -07 000000610 INF: Z Motor: After move to -0.129531, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:18.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:08:18.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:18.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:18.954 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:18.954 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:18.954 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:18.954 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:18.954 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:18.954 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:18.954 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:18.954 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:18.954 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:08:18.954 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:18.964 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:18.964 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:18.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:18.964 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:18.964 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:08:18.964 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:18.974 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:08:18.974 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:18.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28472 150\n [Camera]
17-03-18 05:08:19.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:19.604 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:19.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:19.604 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:19.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:19.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:19.614 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:19.614 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:19.614 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:19.614 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:19.614 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:19.794 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28472 817
17-03-18 05:08:19.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:19.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:08:19.984 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:08:19.984 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:19.984 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:08:19.984 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:08:19.984 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:19.994 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:19.994 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:08:19.994 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:08:20.004 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:08:20.134 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.977204,
17-03-18 05:08:20.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:08:20.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:08:20.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:20.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:08:20.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:08:20.164 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:20.164 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:20.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:08:20.174 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:20.174 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:08:20.344 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:20.354 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:20.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28472 150' command took 2 ms to send, 1370 ms to get response, and 1376 ms overall
17-03-18 05:08:20.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:20.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129542096434562. ------
17-03-18 05:08:20.354 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:20.354 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13603 mm
17-03-18 05:08:20.354 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:20.474 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:20.474 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 05:08:20.474 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:20.474 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:08:20.484 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29716, sync = True, waitForSettling = False)
17-03-18 05:08:20.484 -07 000000579 INF: Z Motor: Moving to -0.136031 mm, started at -0.129542 mm, distance = -6.49 um
17-03-18 05:08:20.484 -07 000000579 INF: FPGA: Xmit ZDACW 29716\n [Z Motor]
17-03-18 05:08:20.484 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:08:20.484 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:08:20.494 -07 000000579 INF: FPGA: 'ZDACW 29716' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:20.494 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:20.494 -07 000000480 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:08:20.504 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:20.504 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:20.504 -07 000000424 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:20.504 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:20.504 -07 000000424 INF: Y Motor: Moving 1355 steps-34
17-03-18 05:08:20.504 -07 000000618 INF: FPGA: Recv ZDACR 29716
17-03-18 05:08:20.514 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:20.514 -07 000000579 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 05:08:20.514 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:20.554 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:08:20.564 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:08:20.564 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:20.564 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:08:20.564 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:08:20.564 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:20.564 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:20.564 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:20.564 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:08:20.574 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:08:20.684 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:20.684 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-18 05:08:20.884 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:08:20.884 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:08:20.934 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:20.944 -07 000000625 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:08:20.944 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:08:20.944 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:20.944 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:08:20.944 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.847 mm, average velocity = 2.182 mm/sec
17-03-18 05:08:21.734 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:21.894 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:21.894 -07 000000502 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:08:21.904 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:21.904 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:21.934 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:21.934 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:21.934 -07 000000424 INF: Y Motor: Moved to 69.8623 after 1452 ms (table move)
17-03-18 05:08:21.934 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136031 mm (DAC = 29716)
17-03-18 05:08:21.934 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.934 -07 000000480 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:08:21.944 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:08:21.944 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.944 -07 000000625 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:08:21.954 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:21.954 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.954 -07 000000502 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:08:21.964 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:21.964 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.964 -07 000000626 INF: FPGA: Recv ZSGSRD 30467
17-03-18 05:08:21.974 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:21.974 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.974 -07 000000569 INF: FPGA: Recv ZSGSRD 30471
17-03-18 05:08:21.984 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:21.984 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.984 -07 000000606 INF: FPGA: Recv ZSGSRD 30468
17-03-18 05:08:21.994 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:21.994 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:21.994 -07 000000625 INF: FPGA: Recv ZSGSRD 30461
17-03-18 05:08:22.004 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:22.004 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:22.004 -07 000000502 INF: FPGA: Recv ZSGSRD 30463
17-03-18 05:08:22.014 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:22.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:22.014 -07 000000501 INF: FPGA: Recv ZSGSRD 30465
17-03-18 05:08:22.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:22.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:22.024 -07 000000569 INF: FPGA: Recv ZSGSRD 30467
17-03-18 05:08:22.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:22.034 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:22.034 -07 000000382 INF: FPGA: Recv ZPIEZORD 26263
17-03-18 05:08:22.044 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:22.044 -07 000000479 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.2 V.
17-03-18 05:08:22.044 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30466 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30461 (-135.2 uncal um), Max = 30471 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:08:22.044 -07 000000479 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30466, posNoise = 5, negNoise = 5
17-03-18 05:08:22.044 -07 000000479 INF: Z Motor: After move to -0.136031, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:22.044 -07 000000479 INF: Z Motor: Settle wait time = 1455 ms, measure time = 105 ms (allowed 150 ms), total time = 1560 ms
17-03-18 05:08:22.044 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:22.094 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 05:08:22.094 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:22.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:22.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:22.094 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:22.094 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:22.094 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:22.094 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:22.094 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:22.094 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:22.104 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:22.104 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:22.104 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:08:22.104 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:08:22.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:22.154 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:08:22.454 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:08:22.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:08:22.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:22.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:22.494 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:22.494 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:22.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:08:22.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:08:22.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:22.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:22.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:08:22.594 -07 000000581 INF: Autofocus start
17-03-18 05:08:22.594 -07 000000581 INF: MeasureProfile start
17-03-18 05:08:22.594 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:22.594 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:22.604 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:22.604 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:22.604 -07 000000581 INF: MeasureProfile done
17-03-18 05:08:22.604 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:08:22.604 -07 000000581 INF: Autofocus finished
17-03-18 05:08:22.804 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:22.804 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:22.804 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.136043399122024. ----------
17-03-18 05:08:22.804 -07 000000610 INF: Cycle	133	Tile	13	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:22.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28223, sync = True, waitForSettling = True)
17-03-18 05:08:22.814 -07 000000610 INF: Z Motor: Moving to -0.129197 mm, started at -0.136043 mm, distance = 6.85 um
17-03-18 05:08:22.814 -07 000000610 INF: FPGA: Xmit ZDACW 28223\n [Z Motor]
17-03-18 05:08:22.814 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:08:22.824 -07 000000610 INF: FPGA: 'ZDACW 28223' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:22.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:22.824 -07 000000606 INF: FPGA: Recv ZDACR 28223
17-03-18 05:08:22.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:22.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:22.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:22.984 -07 000000608 INF: FPGA: Recv ZSGSRD 29400
17-03-18 05:08:22.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:22.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:22.994 -07 000000424 INF: FPGA: Recv ZSGSRD 29398
17-03-18 05:08:23.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.004 -07 000000618 INF: FPGA: Recv ZSGSRD 29397
17-03-18 05:08:23.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.014 -07 000000569 INF: FPGA: Recv ZSGSRD 29403
17-03-18 05:08:23.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.024 -07 000000480 INF: FPGA: Recv ZSGSRD 29401
17-03-18 05:08:23.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.034 -07 000000512 INF: FPGA: Recv ZSGSRD 29399
17-03-18 05:08:23.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.044 -07 000000579 INF: FPGA: Recv ZSGSRD 29395
17-03-18 05:08:23.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.054 -07 000000474 INF: FPGA: Recv ZSGSRD 29405
17-03-18 05:08:23.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.064 -07 000000447 INF: FPGA: Recv ZSGSRD 29406
17-03-18 05:08:23.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:23.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:23.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29390
17-03-18 05:08:23.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:23.084 -07 000000455 INF: FPGA: Recv ZPIEZORD 24810
17-03-18 05:08:23.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:23.094 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.1 V.
17-03-18 05:08:23.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29399 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29390 (-128.4 uncal um), Max = 29406 (-128.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:08:23.094 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29399, posNoise = 7, negNoise = 9
17-03-18 05:08:23.094 -07 000000610 INF: Z Motor: After move to -0.129197, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:23.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:08:23.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:23.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:23.094 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:23.094 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:23.094 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:23.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:23.094 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:23.094 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:23.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:23.094 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:23.094 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:23.094 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:23.104 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:23.104 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:23.104 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:23.104 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:23.114 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:08:23.114 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:23.114 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:08:23.114 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:08:23.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28400 150\n [Camera]
17-03-18 05:08:23.314 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:23.744 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:23.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:23.744 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:23.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:23.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:23.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:23.754 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:23.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:23.754 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:23.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:23.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28400 817
17-03-18 05:08:24.094 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:24.144 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:08:24.144 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:08:24.144 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:24.144 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:08:24.144 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:08:24.144 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:24.144 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:24.144 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:08:24.154 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:24.154 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:08:24.294 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:24.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:24.304 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:24.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:24.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:24.304 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:24.304 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:24.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:08:24.304 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:24.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:08:24.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:24.494 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:24.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28400 150' command took 2 ms to send, 1371 ms to get response, and 1375 ms overall
17-03-18 05:08:24.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:24.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.129188764766765. ------
17-03-18 05:08:24.494 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:24.494 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13552 mm
17-03-18 05:08:24.494 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:24.504 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29605, sync = True, waitForSettling = False)
17-03-18 05:08:24.504 -07 000000455 INF: Z Motor: Moving to -0.135523 mm, started at -0.129189 mm, distance = -6.33 um
17-03-18 05:08:24.504 -07 000000455 INF: FPGA: Xmit ZDACW 29605\n [Z Motor]
17-03-18 05:08:24.504 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:24.504 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:08:24.504 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:08:24.504 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:08:24.504 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:08:24.514 -07 000000455 INF: FPGA: 'ZDACW 29605' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:24.514 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:24.514 -07 000000626 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:08:24.524 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:08:24.524 -07 000000608 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:24.524 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:24.524 -07 000000608 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:08:24.524 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:24.534 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:24.534 -07 000000626 INF: FPGA: Recv ZDACR 29605
17-03-18 05:08:24.544 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:08:24.544 -07 000000455 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:08:24.544 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:24.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:08:24.684 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:08:24.684 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:24.694 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:24.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:08:24.694 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:08:24.694 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:24.694 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:24.694 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:08:24.704 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:08:24.724 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:24.724 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:08:24.914 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:08:24.914 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:08:24.964 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:24.974 -07 000000626 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:08:24.974 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:24.974 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:24.974 -07 000000608 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:08:24.974 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 05:08:25.494 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.999021,
17-03-18 05:08:25.924 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:25.924 -07 000000447 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:08:25.934 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:25.934 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:25.964 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:25.964 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:25.964 -07 000000608 INF: Y Motor: Moved to 70.6875 after 1458 ms (table move)
17-03-18 05:08:25.964 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135523 mm (DAC = 29605)
17-03-18 05:08:25.964 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:25.964 -07 000000467 INF: FPGA: Recv ZSGSRD 30396
17-03-18 05:08:25.974 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:25.974 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:25.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:08:25.984 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:25.984 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:25.984 -07 000000461 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:08:25.994 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:25.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:25.994 -07 000000455 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:08:26.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.004 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:26.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30388
17-03-18 05:08:26.014 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.014 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:26.014 -07 000000569 INF: FPGA: Recv ZSGSRD 30378
17-03-18 05:08:26.024 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:26.024 -07 000000467 INF: FPGA: Recv ZSGSRD 30386
17-03-18 05:08:26.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:26.034 -07 000000480 INF: FPGA: Recv ZSGSRD 30393
17-03-18 05:08:26.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:26.044 -07 000000579 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:08:26.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.054 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:26.054 -07 000000618 INF: FPGA: Recv ZSGSRD 30389
17-03-18 05:08:26.064 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.064 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:26.064 -07 000000474 INF: FPGA: Recv ZPIEZORD 26155
17-03-18 05:08:26.074 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.074 -07 000000424 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.3 V.
17-03-18 05:08:26.074 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30386 (-134.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30378 (-134.7 uncal um), Max = 30396 (-134.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:08:26.074 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 10, negNoise = 8
17-03-18 05:08:26.074 -07 000000424 INF: Z Motor: After move to -0.135523, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:26.074 -07 000000424 INF: Z Motor: Settle wait time = 1462 ms, measure time = 106 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:08:26.074 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:26.124 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:08:26.124 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:26.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:26.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:26.124 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:26.124 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:26.124 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:26.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:26.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:26.124 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:26.134 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:26.134 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:26.144 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:08:26.144 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:08:26.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:26.194 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:26.494 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:26.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:26.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:26.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:08:26.534 -07 000000479 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:08:26.534 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:26.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 05:08:26.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:08:26.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:26.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:26.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:08:26.634 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:26.634 -07 000000461 INF: Autofocus start
17-03-18 05:08:26.634 -07 000000461 INF: MeasureProfile start
17-03-18 05:08:26.634 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:26.644 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:26.644 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:26.644 -07 000000461 INF: MeasureProfile done
17-03-18 05:08:26.644 -07 000000461 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 05:08:26.644 -07 000000461 INF: Autofocus finished
17-03-18 05:08:26.734 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:26.844 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:26.844 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:26.844 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135529462150683. ----------
17-03-18 05:08:26.844 -07 000000610 INF: Cycle	133	Tile	14	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:26.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28083, sync = True, waitForSettling = True)
17-03-18 05:08:26.854 -07 000000610 INF: Z Motor: Moving to -0.128556 mm, started at -0.135529 mm, distance = 6.97 um
17-03-18 05:08:26.854 -07 000000610 INF: FPGA: Xmit ZDACW 28083\n [Z Motor]
17-03-18 05:08:26.854 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:08:26.864 -07 000000610 INF: FPGA: 'ZDACW 28083' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:26.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:26.864 -07 000000479 INF: FPGA: Recv ZDACR 28083
17-03-18 05:08:26.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:26.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:27.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.024 -07 000000608 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:08:27.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:27.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.034 -07 000000467 INF: FPGA: Recv ZSGSRD 29297
17-03-18 05:08:27.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.044 -07 000000424 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:08:27.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29301
17-03-18 05:08:27.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.064 -07 000000382 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:08:27.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.074 -07 000000480 INF: FPGA: Recv ZSGSRD 29302
17-03-18 05:08:27.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.084 -07 000000382 INF: FPGA: Recv ZSGSRD 29299
17-03-18 05:08:27.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.094 -07 000000581 INF: FPGA: Recv ZSGSRD 29308
17-03-18 05:08:27.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.104 -07 000000461 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:08:27.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:27.114 -07 000000626 INF: FPGA: Recv ZSGSRD 29292
17-03-18 05:08:27.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:27.124 -07 000000608 INF: FPGA: Recv ZPIEZORD 24734
17-03-18 05:08:27.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:27.134 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -10.0 V.
17-03-18 05:08:27.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29302 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29303 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29292 (-127.7 uncal um), Max = 29308 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:08:27.134 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29302, posNoise = 6, negNoise = 10
17-03-18 05:08:27.134 -07 000000610 INF: Z Motor: After move to -0.128556, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:27.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:08:27.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:27.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:27.134 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:27.134 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:27.134 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:27.134 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:27.134 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:27.134 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:27.134 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:08:27.134 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:27.134 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:27.134 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:27.144 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:27.144 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:27.144 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:08:27.144 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:27.154 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:08:27.154 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:27.154 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:08:27.154 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:27.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28259 150\n [Camera]
17-03-18 05:08:27.354 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:27.784 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:27.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:27.784 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:27.784 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:27.784 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:08:27.784 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:27.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:27.794 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:27.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:27.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:08:27.974 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28259 817
17-03-18 05:08:28.124 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:28.164 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:08:28.164 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:08:28.164 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:28.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:08:28.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:08:28.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:28.174 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:08:28.174 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:08:28.174 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:08:28.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:08:28.334 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:28.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:28.334 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:28.334 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:28.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:08:28.344 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:28.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:28.344 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:28.344 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:28.344 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:08:28.524 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:28.534 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:28.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28259 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-18 05:08:28.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:28.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128565616189015. ------
17-03-18 05:08:28.534 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13527 mm
17-03-18 05:08:28.534 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:28.534 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:28.534 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:08:28.534 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:08:28.534 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29551, sync = True, waitForSettling = False)
17-03-18 05:08:28.534 -07 000000474 INF: Z Motor: Moving to -0.135276 mm, started at -0.128566 mm, distance = -6.71 um
17-03-18 05:08:28.544 -07 000000474 INF: FPGA: Xmit ZDACW 29551\n [Z Motor]
17-03-18 05:08:28.544 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:28.544 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:28.544 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:08:28.654 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:28.654 -07 000000474 INF: FPGA: 'ZDACW 29551' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-18 05:08:28.664 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:28.664 -07 000000501 INF: FPGA: Recv ZDACR 29551
17-03-18 05:08:28.674 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:28.674 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:08:28.674 -07 000000474 INF: Z Motor: MoveAbsStepped took 130 ms (did NOT wait for settling yet))
17-03-18 05:08:28.674 -07 000000626 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:08:28.684 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 05:08:28.684 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:28.684 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:28.684 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:08:28.684 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:28.734 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:08:28.734 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:08:28.734 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:28.734 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:08:28.734 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:08:28.734 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:28.744 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:28.744 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:08:28.744 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:08:28.744 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:08:28.864 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:28.864 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 319 ms overall
17-03-18 05:08:29.064 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:08:29.064 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 379 ms overall
17-03-18 05:08:29.114 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:29.114 -07 000000461 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:08:29.124 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:29.124 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:29.124 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:08:29.124 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.845 mm, average velocity = 2.230 mm/sec
17-03-18 05:08:30.074 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:30.074 -07 000000618 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:08:30.084 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:30.084 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:30.114 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:30.114 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:30.114 -07 000000512 INF: Y Motor: Moved to 71.5181 after 1572 ms (table move)
17-03-18 05:08:30.114 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135276 mm (DAC = 29551)
17-03-18 05:08:30.114 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.114 -07 000000501 INF: FPGA: Recv ZSGSRD 30355
17-03-18 05:08:30.124 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:30.124 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.124 -07 000000474 INF: FPGA: Recv ZSGSRD 30354
17-03-18 05:08:30.134 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.134 -07 000000447 INF: FPGA: Recv ZSGSRD 30352
17-03-18 05:08:30.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.144 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.144 -07 000000461 INF: FPGA: Recv ZSGSRD 30335
17-03-18 05:08:30.154 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.154 -07 000000626 INF: FPGA: Recv ZSGSRD 30339
17-03-18 05:08:30.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.164 -07 000000512 INF: FPGA: Recv ZSGSRD 30346
17-03-18 05:08:30.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.174 -07 000000502 INF: FPGA: Recv ZSGSRD 30349
17-03-18 05:08:30.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.184 -07 000000447 INF: FPGA: Recv ZSGSRD 30351
17-03-18 05:08:30.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30344
17-03-18 05:08:30.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:30.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30352
17-03-18 05:08:30.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.214 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:30.214 -07 000000480 INF: FPGA: Recv ZPIEZORD 26119
17-03-18 05:08:30.224 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:30.224 -07 000000608 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.3 V.
17-03-18 05:08:30.224 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30348 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30350 (-134.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30335 (-134.4 uncal um), Max = 30355 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 05:08:30.224 -07 000000608 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30348, posNoise = 7, negNoise = 13
17-03-18 05:08:30.224 -07 000000608 INF: Z Motor: After move to -0.135276, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:30.224 -07 000000608 INF: Z Motor: Settle wait time = 1576 ms, measure time = 104 ms (allowed 150 ms), total time = 1680 ms
17-03-18 05:08:30.224 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:30.274 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 05:08:30.274 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:30.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:30.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:30.274 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:30.274 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:30.274 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:30.274 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:30.274 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:30.274 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:30.284 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:30.284 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:30.284 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:08:30.284 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:08:30.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:30.334 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:30.634 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:30.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:30.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:30.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:30.674 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:30.674 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:30.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:08:30.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:08:30.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:30.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:30.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:08:30.774 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:30.774 -07 000000618 INF: Autofocus start
17-03-18 05:08:30.774 -07 000000618 INF: MeasureProfile start
17-03-18 05:08:30.774 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:30.784 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:30.784 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:30.784 -07 000000618 INF: MeasureProfile done
17-03-18 05:08:30.784 -07 000000618 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:08:30.784 -07 000000618 INF: Autofocus finished
17-03-18 05:08:30.854 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.986717,
17-03-18 05:08:30.984 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:30.984 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:08:30.984 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135285342089297. ----------
17-03-18 05:08:30.994 -07 000000610 INF: Cycle	133	Tile	15	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:30.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28092, sync = True, waitForSettling = True)
17-03-18 05:08:30.994 -07 000000610 INF: Z Motor: Moving to -0.128597 mm, started at -0.135285 mm, distance = 6.69 um
17-03-18 05:08:30.994 -07 000000610 INF: FPGA: Xmit ZDACW 28092\n [Z Motor]
17-03-18 05:08:30.994 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:08:31.004 -07 000000610 INF: FPGA: 'ZDACW 28092' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:31.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:31.004 -07 000000569 INF: FPGA: Recv ZDACR 28092
17-03-18 05:08:31.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:31.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.164 -07 000000447 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:08:31.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:31.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.174 -07 000000501 INF: FPGA: Recv ZSGSRD 29312
17-03-18 05:08:31.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.184 -07 000000455 INF: FPGA: Recv ZSGSRD 29303
17-03-18 05:08:31.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:08:31.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.204 -07 000000579 INF: FPGA: Recv ZSGSRD 29313
17-03-18 05:08:31.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.214 -07 000000474 INF: FPGA: Recv ZSGSRD 29316
17-03-18 05:08:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.224 -07 000000424 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:08:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.234 -07 000000626 INF: FPGA: Recv ZSGSRD 29294
17-03-18 05:08:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.244 -07 000000479 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:08:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:31.254 -07 000000569 INF: FPGA: Recv ZSGSRD 29314
17-03-18 05:08:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:31.264 -07 000000502 INF: FPGA: Recv ZPIEZORD 24786
17-03-18 05:08:31.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:31.274 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.9 V.
17-03-18 05:08:31.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29308 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29307 (-127.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 29294 (-127.7 uncal um), Max = 29316 (-127.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 05:08:31.274 -07 000000610 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29308, posNoise = 8, negNoise = 14
17-03-18 05:08:31.274 -07 000000610 INF: Z Motor: After move to -0.128597, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:31.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:08:31.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:31.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:31.274 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:31.274 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:31.274 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:31.274 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:31.274 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:31.274 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:31.274 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:31.274 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:31.274 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:31.274 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:31.284 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:31.284 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:31.284 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:31.284 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:31.294 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:08:31.294 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:31.294 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:08:31.294 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:31.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28268 150\n [Camera]
17-03-18 05:08:31.494 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:31.734 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:31.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:31.924 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:31.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:31.924 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:31.924 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:31.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:31.924 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:31.934 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:31.934 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:31.934 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:31.934 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:32.114 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28268 817
17-03-18 05:08:32.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:32.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:08:32.324 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:08:32.324 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:32.324 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:32.324 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:08:32.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:08:32.334 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:08:32.334 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:32.334 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:32.344 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:08:32.474 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:32.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:32.474 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:32.474 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:32.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:32.484 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:32.484 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:32.484 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:08:32.484 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:32.484 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:08:32.664 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:32.664 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:32.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28268 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-18 05:08:32.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:32.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128604161461865. ------
17-03-18 05:08:32.794 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13500 mm
17-03-18 05:08:32.794 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:32.794 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:32.794 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:08:32.794 -07 000000455 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:08:32.794 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29490, sync = True, waitForSettling = False)
17-03-18 05:08:32.794 -07 000000382 INF: Z Motor: Moving to -0.134997 mm, started at -0.128604 mm, distance = -6.39 um
17-03-18 05:08:32.794 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:32.804 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:32.804 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:32.804 -07 000000501 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:08:32.814 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:08:32.814 -07 000000455 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:32.814 -07 000000455 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:32.814 -07 000000455 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:08:32.814 -07 000000382 INF: FPGA: Xmit ZDACW 29490\n [Z Motor]
17-03-18 05:08:32.814 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:08:32.824 -07 000000382 INF: FPGA: 'ZDACW 29490' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:08:32.824 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:32.834 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:32.844 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:32.844 -07 000000608 INF: FPGA: Recv ZDACR 29490
17-03-18 05:08:32.854 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:08:32.854 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:08:32.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:08:32.874 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:08:32.874 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:32.884 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:08:32.884 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:08:32.884 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:32.884 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:08:32.884 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:32.884 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:08:32.894 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:08:33.024 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:33.024 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:08:33.204 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:08:33.204 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 05:08:33.254 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:33.264 -07 000000467 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:08:33.264 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:08:33.264 -07 000000455 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:33.264 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:08:33.264 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-18 05:08:34.214 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:34.214 -07 000000512 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:08:34.224 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:34.224 -07 000000455 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:34.254 -07 000000455 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:34.254 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:34.254 -07 000000455 INF: Y Motor: Moved to 72.3486 after 1454 ms (table move)
17-03-18 05:08:34.254 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134997 mm (DAC = 29490)
17-03-18 05:08:34.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30307
17-03-18 05:08:34.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:34.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.264 -07 000000512 INF: FPGA: Recv ZSGSRD 30301
17-03-18 05:08:34.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.274 -07 000000447 INF: FPGA: Recv ZSGSRD 30295
17-03-18 05:08:34.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.284 -07 000000382 INF: FPGA: Recv ZSGSRD 30301
17-03-18 05:08:34.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.294 -07 000000455 INF: FPGA: Recv ZSGSRD 30302
17-03-18 05:08:34.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.304 -07 000000581 INF: FPGA: Recv ZSGSRD 30297
17-03-18 05:08:34.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.314 -07 000000512 INF: FPGA: Recv ZSGSRD 30311
17-03-18 05:08:34.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.324 -07 000000424 INF: FPGA: Recv ZSGSRD 30306
17-03-18 05:08:34.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.334 -07 000000625 INF: FPGA: Recv ZSGSRD 30309
17-03-18 05:08:34.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:34.344 -07 000000455 INF: FPGA: Recv ZSGSRD 30304
17-03-18 05:08:34.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.354 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:34.354 -07 000000467 INF: FPGA: Recv ZPIEZORD 26054
17-03-18 05:08:34.364 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:34.364 -07 000000626 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.3 V.
17-03-18 05:08:34.364 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30303 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30303 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30295 (-134.2 uncal um), Max = 30311 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:08:34.364 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30303, posNoise = 8, negNoise = 8
17-03-18 05:08:34.364 -07 000000626 INF: Z Motor: After move to -0.134997, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:34.364 -07 000000626 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:08:34.364 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:34.414 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:08:34.414 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:34.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:34.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:34.414 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:34.414 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:34.414 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:34.414 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:34.414 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:34.414 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:34.414 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:34.414 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:34.434 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:08:34.434 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:08:34.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:34.484 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:34.784 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:34.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:34.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:34.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:34.824 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:34.824 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:34.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:08:34.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:08:34.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:34.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:34.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:08:34.924 -07 000000569 INF: Autofocus start
17-03-18 05:08:34.924 -07 000000569 INF: MeasureProfile start
17-03-18 05:08:34.924 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:34.924 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:34.934 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:34.934 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:34.934 -07 000000569 INF: MeasureProfile done
17-03-18 05:08:34.934 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:08:34.934 -07 000000569 INF: Autofocus finished
17-03-18 05:08:35.134 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:35.134 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:08:35.134 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.134996252542917. ----------
17-03-18 05:08:35.134 -07 000000610 INF: Cycle	133	Tile	16	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:35.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27985, sync = True, waitForSettling = True)
17-03-18 05:08:35.144 -07 000000610 INF: Z Motor: Moving to -0.128107 mm, started at -0.134996 mm, distance = 6.89 um
17-03-18 05:08:35.144 -07 000000610 INF: FPGA: Xmit ZDACW 27985\n [Z Motor]
17-03-18 05:08:35.144 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:08:35.154 -07 000000610 INF: FPGA: 'ZDACW 27985' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:35.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:35.154 -07 000000625 INF: FPGA: Recv ZDACR 27985
17-03-18 05:08:35.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:35.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.314 -07 000000502 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:08:35.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:35.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.324 -07 000000512 INF: FPGA: Recv ZSGSRD 29231
17-03-18 05:08:35.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.334 -07 000000424 INF: FPGA: Recv ZSGSRD 29230
17-03-18 05:08:35.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.344 -07 000000569 INF: FPGA: Recv ZSGSRD 29228
17-03-18 05:08:35.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.354 -07 000000626 INF: FPGA: Recv ZSGSRD 29230
17-03-18 05:08:35.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.364 -07 000000579 INF: FPGA: Recv ZSGSRD 29235
17-03-18 05:08:35.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.374 -07 000000618 INF: FPGA: Recv ZSGSRD 29232
17-03-18 05:08:35.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:08:35.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.394 -07 000000581 INF: FPGA: Recv ZSGSRD 29225
17-03-18 05:08:35.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:35.404 -07 000000455 INF: FPGA: Recv ZSGSRD 29232
17-03-18 05:08:35.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:35.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:35.424 -07 000000424 INF: FPGA: Recv ZPIEZORD 24680
17-03-18 05:08:35.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:35.434 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -10.0 V.
17-03-18 05:08:35.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29231 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29225 (-127.3 uncal um), Max = 29235 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:08:35.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29231, posNoise = 4, negNoise = 6
17-03-18 05:08:35.434 -07 000000610 INF: Z Motor: After move to -0.128107, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:35.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:08:35.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:35.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:35.434 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:35.434 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:35.434 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:35.434 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:35.434 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:35.434 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:35.434 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:08:35.434 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:35.434 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:35.434 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:35.444 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:35.444 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:35.444 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:08:35.444 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:35.454 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:08:35.454 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:08:35.454 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:08:35.454 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:08:35.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28161 150\n [Camera]
17-03-18 05:08:35.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:36.084 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:36.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:36.094 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:36.094 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:36.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:36.094 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:36.094 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:36.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:36.094 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:36.094 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:36.214 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.018051,
17-03-18 05:08:36.284 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28161 817
17-03-18 05:08:36.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:36.474 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:08:36.474 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:08:36.474 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:36.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:08:36.474 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:08:36.474 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:36.474 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:36.474 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:36.474 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:08:36.484 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:08:36.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:36.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:36.644 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:36.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:36.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:36.644 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:36.644 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:36.644 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:08:36.644 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:36.654 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:08:36.734 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:36.834 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-18 05:08:36.834 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:36.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28161 150' command took 2 ms to send, 1374 ms to get response, and 1377 ms overall
17-03-18 05:08:36.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:36.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.12810949712695. ------
17-03-18 05:08:36.834 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:36.834 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13468 mm
17-03-18 05:08:36.834 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:36.844 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:08:36.844 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:08:36.844 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:36.844 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:36.844 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:08:36.844 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29421, sync = True, waitForSettling = False)
17-03-18 05:08:36.844 -07 000000501 INF: Z Motor: Moving to -0.134681 mm, started at -0.128109 mm, distance = -6.57 um
17-03-18 05:08:36.844 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:08:36.854 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:36.854 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:36.854 -07 000000626 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:36.854 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:36.854 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:08:36.864 -07 000000501 INF: FPGA: Xmit ZDACW 29421\n [Z Motor]
17-03-18 05:08:36.864 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:08:36.874 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:36.874 -07 000000501 INF: FPGA: 'ZDACW 29421' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:08:36.884 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:36.884 -07 000000608 INF: FPGA: Recv ZDACR 29421
17-03-18 05:08:36.894 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:36.894 -07 000000501 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:08:37.024 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:08:37.024 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:08:37.024 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:37.034 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:08:37.034 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:08:37.034 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:37.034 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:37.034 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:37.034 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:08:37.034 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:08:37.054 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:37.054 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 05:08:37.244 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:08:37.244 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:08:37.294 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:37.304 -07 000000569 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:08:37.304 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:08:37.304 -07 000000626 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:37.304 -07 000000626 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:08:37.304 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:08:38.254 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:38.254 -07 000000581 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:08:38.264 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:38.264 -07 000000626 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:38.294 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:38.294 -07 000000626 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:38.294 -07 000000626 INF: Y Motor: Moved to 73.1748 after 1450 ms (table move)
17-03-18 05:08:38.294 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134681 mm (DAC = 29421)
17-03-18 05:08:38.294 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.304 -07 000000479 INF: FPGA: Recv ZSGSRD 30255
17-03-18 05:08:38.304 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:08:38.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.304 -07 000000606 INF: FPGA: Recv ZSGSRD 30253
17-03-18 05:08:38.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.314 -07 000000474 INF: FPGA: Recv ZSGSRD 30252
17-03-18 05:08:38.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.324 -07 000000625 INF: FPGA: Recv ZSGSRD 30257
17-03-18 05:08:38.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.334 -07 000000569 INF: FPGA: Recv ZSGSRD 30250
17-03-18 05:08:38.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.344 -07 000000626 INF: FPGA: Recv ZSGSRD 30250
17-03-18 05:08:38.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.354 -07 000000512 INF: FPGA: Recv ZSGSRD 30258
17-03-18 05:08:38.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.364 -07 000000579 INF: FPGA: Recv ZSGSRD 30255
17-03-18 05:08:38.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.374 -07 000000467 INF: FPGA: Recv ZSGSRD 30249
17-03-18 05:08:38.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.384 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:38.384 -07 000000569 INF: FPGA: Recv ZSGSRD 30252
17-03-18 05:08:38.394 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.394 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:38.394 -07 000000501 INF: FPGA: Recv ZPIEZORD 26035
17-03-18 05:08:38.404 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:38.404 -07 000000447 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.489 V. Piezo Error = -9.3 V.
17-03-18 05:08:38.404 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30253 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30252 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30249 (-133.9 uncal um), Max = 30258 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:08:38.404 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30253, posNoise = 5, negNoise = 4
17-03-18 05:08:38.404 -07 000000447 INF: Z Motor: After move to -0.134681, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:38.404 -07 000000447 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 05:08:38.404 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:38.454 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 05:08:38.454 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:38.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:38.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:38.454 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:38.454 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:38.454 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:38.454 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:38.454 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:38.454 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:38.464 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:38.464 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:38.464 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:08:38.464 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:08:38.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:38.514 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:38.814 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:38.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:38.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:38.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:08:38.854 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:38.854 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:38.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:08:38.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:08:38.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:38.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:38.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:08:38.954 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:38.954 -07 000000608 INF: Autofocus start
17-03-18 05:08:38.954 -07 000000608 INF: MeasureProfile start
17-03-18 05:08:38.954 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:38.964 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:08:38.964 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:38.964 -07 000000608 INF: MeasureProfile done
17-03-18 05:08:38.964 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:08:38.964 -07 000000608 INF: Autofocus finished
17-03-18 05:08:39.164 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:39.164 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:39.164 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134675041935829. ----------
17-03-18 05:08:39.164 -07 000000610 INF: Cycle	133	Tile	17	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:39.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27928, sync = True, waitForSettling = True)
17-03-18 05:08:39.174 -07 000000610 INF: Z Motor: Moving to -0.127846 mm, started at -0.134675 mm, distance = 6.83 um
17-03-18 05:08:39.174 -07 000000610 INF: FPGA: Xmit ZDACW 27928\n [Z Motor]
17-03-18 05:08:39.174 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:08:39.184 -07 000000610 INF: FPGA: 'ZDACW 27928' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:39.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:39.184 -07 000000618 INF: FPGA: Recv ZDACR 27928
17-03-18 05:08:39.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.344 -07 000000474 INF: FPGA: Recv ZSGSRD 29188
17-03-18 05:08:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.354 -07 000000606 INF: FPGA: Recv ZSGSRD 29196
17-03-18 05:08:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.364 -07 000000626 INF: FPGA: Recv ZSGSRD 29188
17-03-18 05:08:39.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.374 -07 000000579 INF: FPGA: Recv ZSGSRD 29195
17-03-18 05:08:39.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.384 -07 000000447 INF: FPGA: Recv ZSGSRD 29195
17-03-18 05:08:39.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.394 -07 000000501 INF: FPGA: Recv ZSGSRD 29190
17-03-18 05:08:39.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.404 -07 000000606 INF: FPGA: Recv ZSGSRD 29189
17-03-18 05:08:39.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.414 -07 000000626 INF: FPGA: Recv ZSGSRD 29189
17-03-18 05:08:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29194
17-03-18 05:08:39.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:39.434 -07 000000581 INF: FPGA: Recv ZSGSRD 29183
17-03-18 05:08:39.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:39.444 -07 000000501 INF: FPGA: Recv ZPIEZORD 24627
17-03-18 05:08:39.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:39.454 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -10.0 V.
17-03-18 05:08:39.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29191 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29190 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29183 (-127.0 uncal um), Max = 29196 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:08:39.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29191, posNoise = 5, negNoise = 8
17-03-18 05:08:39.454 -07 000000610 INF: Z Motor: After move to -0.127846, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:39.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:08:39.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:39.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:39.454 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:39.454 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:39.454 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:39.454 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:39.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:39.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:39.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:08:39.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:39.464 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:08:39.464 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:39.464 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:08:39.464 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:39.464 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:39.464 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:39.474 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:08:39.474 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:39.474 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:08:39.474 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:39.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28105 150\n [Camera]
17-03-18 05:08:39.674 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:40.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:40.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:40.104 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:40.104 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:40.104 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:08:40.114 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:40.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:40.114 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:40.114 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:40.114 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:08:40.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28105 817
17-03-18 05:08:40.444 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:40.504 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:08:40.504 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:08:40.504 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:40.514 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:08:40.514 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:08:40.514 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:40.514 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:40.514 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:08:40.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:40.524 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:08:40.654 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:40.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:40.654 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:40.654 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:40.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:08:40.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:40.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:40.664 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:40.664 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:40.664 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:08:40.844 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:40.854 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:40.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28105 150' command took 2 ms to send, 1370 ms to get response, and 1375 ms overall
17-03-18 05:08:40.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:40.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.127852528641279. ------
17-03-18 05:08:40.854 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:40.854 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13368 mm
17-03-18 05:08:40.854 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:40.964 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:40.964 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-18 05:08:40.964 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:40.974 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:08:40.974 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:08:40.974 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:40.974 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29202, sync = True, waitForSettling = False)
17-03-18 05:08:40.974 -07 000000424 INF: Z Motor: Moving to -0.133678 mm, started at -0.127853 mm, distance = -5.83 um
17-03-18 05:08:40.974 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:08:40.984 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:40.984 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:40.984 -07 000000424 INF: FPGA: Xmit ZDACW 29202\n [Z Motor]
17-03-18 05:08:40.984 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:08:40.984 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:40.984 -07 000000461 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:08:40.994 -07 000000424 INF: FPGA: 'ZDACW 29202' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:08:40.994 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:40.994 -07 000000512 INF: FPGA: Recv ZDACR 29202
17-03-18 05:08:41.004 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:41.004 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:41.004 -07 000000424 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 05:08:41.054 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:08:41.054 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:08:41.054 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:41.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:08:41.054 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:08:41.054 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:41.054 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:08:41.054 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:08:41.064 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:41.064 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:08:41.174 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:41.174 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-18 05:08:41.374 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:08:41.374 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:08:41.414 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:41.424 -07 000000579 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:08:41.424 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:08:41.424 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:41.424 -07 000000461 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:08:41.424 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.848 mm, average velocity = 2.152 mm/sec
17-03-18 05:08:41.574 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 3.993549,
17-03-18 05:08:41.734 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:41.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:42.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:42.374 -07 000000480 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:08:42.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:42.384 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:42.404 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:42.404 -07 000000461 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:42.404 -07 000000461 INF: Y Motor: Moved to 74.0068 after 1432 ms (table move)
17-03-18 05:08:42.404 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133678 mm (DAC = 29202)
17-03-18 05:08:42.404 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.414 -07 000000608 INF: FPGA: Recv ZSGSRD 30097
17-03-18 05:08:42.414 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:08:42.414 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.414 -07 000000606 INF: FPGA: Recv ZSGSRD 30102
17-03-18 05:08:42.424 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.424 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.424 -07 000000382 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:08:42.434 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.434 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.434 -07 000000447 INF: FPGA: Recv ZSGSRD 30097
17-03-18 05:08:42.444 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.444 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.444 -07 000000461 INF: FPGA: Recv ZSGSRD 30106
17-03-18 05:08:42.454 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.454 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.454 -07 000000608 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:08:42.464 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.464 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.464 -07 000000579 INF: FPGA: Recv ZSGSRD 30091
17-03-18 05:08:42.474 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.474 -07 000000626 INF: FPGA: Recv ZSGSRD 30096
17-03-18 05:08:42.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.484 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.484 -07 000000447 INF: FPGA: Recv ZSGSRD 30099
17-03-18 05:08:42.494 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.494 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:42.494 -07 000000569 INF: FPGA: Recv ZSGSRD 30101
17-03-18 05:08:42.504 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.504 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:42.504 -07 000000625 INF: FPGA: Recv ZPIEZORD 25850
17-03-18 05:08:42.514 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:42.514 -07 000000502 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.3 V.
17-03-18 05:08:42.514 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30099 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30100 (-132.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30091 (-132.8 uncal um), Max = 30106 (-132.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:08:42.514 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30099, posNoise = 7, negNoise = 8
17-03-18 05:08:42.514 -07 000000502 INF: Z Motor: After move to -0.133678, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:42.514 -07 000000502 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-18 05:08:42.514 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:42.564 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-18 05:08:42.564 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:42.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:42.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:42.574 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:42.574 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:42.574 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:42.574 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:42.574 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:08:42.574 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:42.574 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:42.574 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:42.584 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:08:42.584 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:08:42.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:42.634 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:42.934 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:42.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:42.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:42.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:42.974 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:42.974 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:42.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:08:43.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:08:43.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:43.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:43.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:08:43.074 -07 000000606 INF: Autofocus start
17-03-18 05:08:43.074 -07 000000606 INF: MeasureProfile start
17-03-18 05:08:43.074 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:43.074 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:43.084 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:43.084 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:43.084 -07 000000606 INF: MeasureProfile done
17-03-18 05:08:43.084 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:08:43.084 -07 000000606 INF: Autofocus finished
17-03-18 05:08:43.284 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:43.284 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:43.284 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133685713265998. ----------
17-03-18 05:08:43.284 -07 000000610 INF: Cycle	133	Tile	18	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:43.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27726, sync = True, waitForSettling = True)
17-03-18 05:08:43.294 -07 000000610 INF: Z Motor: Moving to -0.126921 mm, started at -0.133686 mm, distance = 6.76 um
17-03-18 05:08:43.294 -07 000000610 INF: FPGA: Xmit ZDACW 27726\n [Z Motor]
17-03-18 05:08:43.294 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:08:43.304 -07 000000610 INF: FPGA: 'ZDACW 27726' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:43.304 -07 000000501 INF: FPGA: Recv ZDACR 27726
17-03-18 05:08:43.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29045
17-03-18 05:08:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.474 -07 000000455 INF: FPGA: Recv ZSGSRD 29048
17-03-18 05:08:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:43.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.484 -07 000000461 INF: FPGA: Recv ZSGSRD 29051
17-03-18 05:08:43.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.494 -07 000000626 INF: FPGA: Recv ZSGSRD 29045
17-03-18 05:08:43.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.504 -07 000000618 INF: FPGA: Recv ZSGSRD 29043
17-03-18 05:08:43.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29048
17-03-18 05:08:43.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.524 -07 000000569 INF: FPGA: Recv ZSGSRD 29046
17-03-18 05:08:43.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.534 -07 000000501 INF: FPGA: Recv ZSGSRD 29048
17-03-18 05:08:43.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.544 -07 000000424 INF: FPGA: Recv ZSGSRD 29045
17-03-18 05:08:43.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:43.554 -07 000000382 INF: FPGA: Recv ZSGSRD 29046
17-03-18 05:08:43.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:43.564 -07 000000581 INF: FPGA: Recv ZPIEZORD 24472
17-03-18 05:08:43.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:43.574 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -10.0 V.
17-03-18 05:08:43.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29046 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29046 (-126.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29043 (-126.1 uncal um), Max = 29051 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:08:43.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29046, posNoise = 5, negNoise = 3
17-03-18 05:08:43.574 -07 000000610 INF: Z Motor: After move to -0.126921, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:43.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:08:43.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:43.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:43.574 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:43.574 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:43.574 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:43.574 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:43.574 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:43.574 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:43.574 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:08:43.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:43.574 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:43.574 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:43.574 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:08:43.574 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:43.584 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:08:43.584 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:43.594 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:08:43.594 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:08:43.594 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:08:43.594 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:08:43.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 27903 150\n [Camera]
17-03-18 05:08:43.794 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:44.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:44.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:44.224 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:44.224 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:44.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:44.234 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:44.234 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:44.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:44.234 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:44.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:44.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27903 817
17-03-18 05:08:44.564 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:44.614 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:08:44.614 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:08:44.614 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:44.624 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:44.624 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:08:44.624 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:08:44.624 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:08:44.624 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:44.624 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:44.634 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:08:44.774 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:44.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:44.774 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:44.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:44.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:44.784 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:44.784 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:44.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:08:44.784 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:44.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:08:44.964 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:44.964 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:44.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 27903 150' command took 2 ms to send, 1369 ms to get response, and 1375 ms overall
17-03-18 05:08:44.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:08:44.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.126921017880724. ------
17-03-18 05:08:44.974 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:44.974 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13328 mm
17-03-18 05:08:44.974 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:08:44.974 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:08:44.974 -07 000000625 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:08:44.974 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29114, sync = True, waitForSettling = False)
17-03-18 05:08:44.974 -07 000000581 INF: Z Motor: Moving to -0.133275 mm, started at -0.126921 mm, distance = -6.35 um
17-03-18 05:08:44.974 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:44.984 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:44.984 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:08:44.984 -07 000000512 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:08:44.994 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:08:44.994 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:44.994 -07 000000581 INF: FPGA: Xmit ZDACW 29114\n [Z Motor]
17-03-18 05:08:44.994 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:08:44.994 -07 000000625 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:08:44.994 -07 000000625 INF: Y Motor: Moving 1352 steps-32
17-03-18 05:08:45.004 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:08:45.004 -07 000000581 INF: FPGA: 'ZDACW 29114' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:08:45.134 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:08:45.144 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:45.144 -07 000000455 INF: FPGA: Recv ZDACR 29114
17-03-18 05:08:45.154 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:08:45.154 -07 000000581 INF: Z Motor: MoveAbsStepped took 172 ms (did NOT wait for settling yet))
17-03-18 05:08:45.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:08:45.184 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:08:45.184 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:45.184 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:08:45.184 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:08:45.184 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:45.194 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:45.194 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:08:45.194 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:08:45.194 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:08:45.204 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:08:45.204 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 120 ms to send, 72 ms to get response, and 222 ms overall
17-03-18 05:08:45.504 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:08:45.504 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 514 ms overall
17-03-18 05:08:45.544 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:45.544 -07 000000480 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:08:45.554 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:45.554 -07 000000625 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:45.554 -07 000000625 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:08:45.554 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 514 ms, distance = 0.846 mm, average velocity = 1.645 mm/sec
17-03-18 05:08:46.504 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:46.504 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:08:46.514 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:46.514 -07 000000625 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:46.534 -07 000000625 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:46.534 -07 000000625 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:08:46.534 -07 000000625 INF: Y Motor: Moved to 74.8306 after 1553 ms (table move)
17-03-18 05:08:46.534 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133275 mm (DAC = 29114)
17-03-18 05:08:46.534 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.534 -07 000000447 INF: FPGA: Recv ZSGSRD 30032
17-03-18 05:08:46.544 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:08:46.544 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.544 -07 000000382 INF: FPGA: Recv ZSGSRD 30027
17-03-18 05:08:46.554 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.554 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.554 -07 000000606 INF: FPGA: Recv ZSGSRD 30032
17-03-18 05:08:46.564 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.564 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.564 -07 000000480 INF: FPGA: Recv ZSGSRD 30029
17-03-18 05:08:46.574 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.574 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.574 -07 000000579 INF: FPGA: Recv ZSGSRD 30043
17-03-18 05:08:46.584 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.584 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.584 -07 000000608 INF: FPGA: Recv ZSGSRD 30035
17-03-18 05:08:46.594 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.594 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.594 -07 000000480 INF: FPGA: Recv ZSGSRD 30038
17-03-18 05:08:46.604 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.604 -07 000000455 INF: FPGA: Recv ZSGSRD 30034
17-03-18 05:08:46.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.624 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.624 -07 000000625 INF: FPGA: Recv ZSGSRD 30040
17-03-18 05:08:46.634 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:08:46.634 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:46.634 -07 000000480 INF: FPGA: Recv ZSGSRD 30034
17-03-18 05:08:46.644 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.644 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:46.644 -07 000000501 INF: FPGA: Recv ZPIEZORD 25800
17-03-18 05:08:46.654 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:46.654 -07 000000618 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.3 V.
17-03-18 05:08:46.654 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30034 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30034 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30027 (-132.4 uncal um), Max = 30043 (-132.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:08:46.654 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30034, posNoise = 9, negNoise = 7
17-03-18 05:08:46.654 -07 000000618 INF: Z Motor: After move to -0.133275, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:46.654 -07 000000618 INF: Z Motor: Settle wait time = 1556 ms, measure time = 116 ms (allowed 150 ms), total time = 1672 ms
17-03-18 05:08:46.654 -07 000000618 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:08:46.694 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-18 05:08:46.694 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:08:46.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:46.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:46.694 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:46.694 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:46.694 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:08:46.694 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:46.694 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:46.694 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:08:46.704 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:46.704 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:08:46.704 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:08:46.704 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:08:46.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:08:46.734 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:46.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 132. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:46.754 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:08:46.934 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.019446,
17-03-18 05:08:47.054 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:08:47.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:08:47.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:08:47.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) start.
17-03-18 05:08:47.094 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:08:47.094 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:08:47.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:08:47.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575323040, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:08:47.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:47.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:08:47.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:08:47.294 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:08:47.294 -07 000000502 INF: Autofocus start
17-03-18 05:08:47.294 -07 000000502 INF: MeasureProfile start
17-03-18 05:08:47.294 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:08:47.304 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:47.304 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:08:47.314 -07 000000502 INF: MeasureProfile done
17-03-18 05:08:47.314 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:08:47.314 -07 000000502 INF: Autofocus finished
17-03-18 05:08:47.504 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:08:47.504 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:08:47.504 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133268139476784. ----------
17-03-18 05:08:47.514 -07 000000610 INF: Cycle	133	Tile	19	Exposure Settings		A	432	G	208	T	208	C	432
17-03-18 05:08:47.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27638, sync = True, waitForSettling = True)
17-03-18 05:08:47.514 -07 000000610 INF: Z Motor: Moving to -0.126519 mm, started at -0.133268 mm, distance = 6.75 um
17-03-18 05:08:47.514 -07 000000610 INF: FPGA: Xmit ZDACW 27638\n [Z Motor]
17-03-18 05:08:47.514 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:08:47.524 -07 000000610 INF: FPGA: 'ZDACW 27638' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:47.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:08:47.524 -07 000000608 INF: FPGA: Recv ZDACR 27638
17-03-18 05:08:47.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:47.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:08:47.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.684 -07 000000501 INF: FPGA: Recv ZSGSRD 28989
17-03-18 05:08:47.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:47.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.694 -07 000000479 INF: FPGA: Recv ZSGSRD 28988
17-03-18 05:08:47.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.704 -07 000000461 INF: FPGA: Recv ZSGSRD 28984
17-03-18 05:08:47.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.714 -07 000000474 INF: FPGA: Recv ZSGSRD 28987
17-03-18 05:08:47.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.724 -07 000000512 INF: FPGA: Recv ZSGSRD 28978
17-03-18 05:08:47.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.734 -07 000000581 INF: FPGA: Recv ZSGSRD 28992
17-03-18 05:08:47.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.744 -07 000000606 INF: FPGA: Recv ZSGSRD 28989
17-03-18 05:08:47.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.754 -07 000000447 INF: FPGA: Recv ZSGSRD 28983
17-03-18 05:08:47.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.764 -07 000000382 INF: FPGA: Recv ZSGSRD 28979
17-03-18 05:08:47.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:08:47.774 -07 000000502 INF: FPGA: Recv ZSGSRD 28981
17-03-18 05:08:47.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:08:47.784 -07 000000501 INF: FPGA: Recv ZPIEZORD 24392
17-03-18 05:08:47.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:08:47.794 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -10.1 V.
17-03-18 05:08:47.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28985 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28986 (-125.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 28978 (-125.7 uncal um), Max = 28992 (-125.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:08:47.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28985, posNoise = 7, negNoise = 7
17-03-18 05:08:47.794 -07 000000610 INF: Z Motor: After move to -0.126519, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:08:47.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:08:47.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:08:47.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:08:47.794 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:08:47.794 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:08:47.794 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:08:47.794 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:08:47.794 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:08:47.794 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:08:47.794 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:08:47.794 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:08:47.794 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:08:47.794 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:08:47.804 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:08:47.804 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:08:47.804 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:08:47.804 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:08:47.814 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:08:47.814 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:08:47.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:08:47.814 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:08:47.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 27815 150\n [Camera]
17-03-18 05:08:48.014 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:08:48.444 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-18 05:08:48.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-18 05:08:48.444 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:48.444 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-18 05:08:48.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-18 05:08:48.454 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:48.454 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:48.454 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) start.
17-03-18 05:08:48.454 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:48.454 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:08:48.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27815 820
17-03-18 05:08:48.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-18 05:08:48.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594404424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:08:48.844 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:08:48.844 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:48.854 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:48.854 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:08:48.854 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:08:48.854 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:08:48.854 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:48.854 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:48.864 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:08:48.994 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-18 05:08:48.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-18 05:08:48.994 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:08:48.994 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-18 05:08:49.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-18 05:08:49.004 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:08:49.004 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:08:49.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:08:49.004 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:08:49.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:08:49.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-18 05:08:49.184 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:08:49.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 27815 150' command took 2 ms to send, 1368 ms to get response, and 1374 ms overall
17-03-18 05:08:49.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:08:49.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:08:49.404 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:49.404 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:08:49.404 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:08:49.404 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:08:49.404 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:49.404 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:08:49.404 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:08:49.404 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:08:49.414 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:08:49.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:08:49.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:08:49.494 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:08:49.504 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 05:08:49.504 -07 000000610 INF: Imaging Cycle 133: ScanTilesCommand Cycle 133 time end. Duration was 164424 ms.
17-03-18 05:08:49.504 -07 000000610 INF: =================== Cycle #133 ===================
17-03-18 05:08:49.504 -07 000000610 INF: ===================  ===================
17-03-18 05:08:49.504 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:08:49.514 -07 000000479 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 05:08:49.514 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:49.514 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 05:08:49.514 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 133, FrontChillerTemperature: 4.019446, FrontChillerHeatSinkTemperature: 0.385317, AmbientTemperature: 18.67331, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.45192, GreenLEDSensorTemperature: 27.39307, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 05:08:49.614 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.