17-03-18 05:08:49.674 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:08:49.674 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:08:49.674 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 05:08:49.674 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:49.674 -07 000000447 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:08:49.684 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:08:49.684 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:49.684 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:08:49.684 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:08:49.684 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:08:49.794 -07 000000474 INF: FPGA: Recv YMVTO 154378 874
17-03-18 05:08:49.804 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 115 ms overall
17-03-18 05:08:49.804 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:08:49.804 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 874 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 05:08:49.804 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 05:08:51.734 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:08:51.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1827, R2=1897, Total=3724. Warn if over 250 bubbles per interval.
17-03-18 05:08:52.294 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.997626,
17-03-18 05:08:52.804 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:08:52.804 -07 000000569 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:08:52.814 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:08:52.814 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:08:52.834 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:08:52.834 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:08:52.834 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3157 ms
17-03-18 05:08:52.834 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 60° ===================
17-03-18 05:08:52.834 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:08:52.834 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:08:52.844 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:08:52.844 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:08:52.844 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:08:52.844 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 05:08:52.854 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:08:52.854 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 60° ===================
17-03-18 05:08:52.854 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:08:52.854 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:08:52.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:08:52.884 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:08:52.884 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:08:52.884 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:08:53.184 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:08:53.204 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:08:53.204 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:08:53.254 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:08:53.274 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:08:53.274 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:08:53.374 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:08:53.374 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:08:53.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:08:53.404 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:08:53.404 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:08:53.404 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:08:53.534 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:08:53.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:08:56.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:08:56.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:08:56.734 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 05:08:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1830, R2=1899, Total=3729. Warn if over 250 bubbles per interval.
17-03-18 05:08:57.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:08:57.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:08:57.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:08:57.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:08:57.634 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:08:57.634 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:08:57.654 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.985358,
17-03-18 05:08:57.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:08:57.794 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:08:57.794 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:08:57.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:08:57.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:08:57.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:08:57.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:08:58.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:08:58.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:08:58.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:08:58.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:08:58.574 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:08:58.574 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:08:59.794 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:08:59.794 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:08:59.794 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:08:59.814 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:08:59.814 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:08:59.814 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:08:59.944 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:08:59.964 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:08:59.964 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:09:00.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:00.034 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:09:00.034 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:09:00.134 -07 000000610 INF: =================== Cycle #134, Pumping Reagent CMS (4) ===================
17-03-18 05:09:00.134 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:09:00.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:00.164 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:09:00.164 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:09:00.164 -07 000000610 INF: =================== Cycle #134, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:09:00.294 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:09:00.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:01.734 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-18 05:09:01.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1835, R2=1903, Total=3738. Warn if over 250 bubbles per interval.
17-03-18 05:09:01.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:01.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:02.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:02.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:02.254 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 05:09:02.254 -07 000000610 INF: =================== Cycle #134, Pumping Reagent CMS (4) ===================
17-03-18 05:09:02.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:02.414 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:09:02.414 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:09:02.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:02.574 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:09:02.574 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:09:02.574 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:09:02.704 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:09:02.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:03.014 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.989471,
17-03-18 05:09:03.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:03.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:03.194 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:09:03.194 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:09:04.414 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:09:04.414 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:09:04.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:04.434 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:09:04.434 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:09:04.434 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:09:04.584 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:09:04.604 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:09:04.604 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:09:04.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:04.674 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:09:04.674 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:09:04.774 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:09:04.774 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:09:04.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:04.804 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:09:04.804 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:09:04.804 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:09:04.934 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:09:04.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:05.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:05.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:05.874 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 05:09:05.874 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:09:06.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:06.034 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:09:06.034 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:09:06.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:06.194 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:09:06.194 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:09:06.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:09:06.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:09:06.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:06.734 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 05:09:06.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1835, R2=1905, Total=3740. Warn if over 250 bubbles per interval.
17-03-18 05:09:06.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:06.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:06.814 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:09:06.814 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:09:06.814 -07 000000581 INF: WaitCommand(10000) start
17-03-18 05:09:06.814 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:09:06.814 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:09:08.034 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:09:08.034 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 05:09:08.064 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:09:08.064 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:09:08.194 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:09:08.234 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:08.374 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.012614,
17-03-18 05:09:09.764 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:09.794 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:10.214 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:10.244 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:10.244 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:09:10.244 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:09:10.244 -07 000000579 INF: ===================  ===================
17-03-18 05:09:11.734 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1835, R2=1905, Total=3740. Warn if over 250 bubbles per interval.
17-03-18 05:09:13.734 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.986717,
17-03-18 05:09:16.734 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1835, R2=1905, Total=3740. Warn if over 250 bubbles per interval.
17-03-18 05:09:16.824 -07 000000581 INF: WaitCommand(10000) end
17-03-18 05:09:16.824 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:09:16.824 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:09:16.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:16.854 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:09:16.854 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:09:16.854 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:09:16.984 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:09:17.024 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:19.094 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.011254,
17-03-18 05:09:21.734 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:09:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:23.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:23.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:23.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:23.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:24.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:24.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:24.454 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.005817,
17-03-18 05:09:24.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:24.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:24.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:24.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:24.984 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:09:24.984 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:09:25.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:25.144 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:09:25.144 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:09:25.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:25.304 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:09:25.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:09:25.304 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:09:25.434 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:09:25.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:25.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:25.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:25.924 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:09:25.924 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:09:26.734 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:27.144 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:09:27.144 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:09:27.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:27.164 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:09:27.164 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:09:27.164 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:09:27.374 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:09:27.394 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:09:27.394 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:09:27.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:27.464 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:09:27.464 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:09:27.564 -07 000000610 INF: =================== Cycle #134, Pumping Reagent IMT (1) ===================
17-03-18 05:09:27.564 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:09:27.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:27.594 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:09:27.594 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:09:27.594 -07 000000610 INF: =================== Cycle #134, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:09:27.724 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:09:27.764 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:29.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:29.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:29.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:29.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:29.684 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:09:29.684 -07 000000610 INF: =================== Cycle #134, Pumping Reagent IMT (1) ===================
17-03-18 05:09:29.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:29.814 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.000345,
17-03-18 05:09:29.844 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:09:29.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:09:29.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:30.004 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:09:30.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:09:30.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:09:30.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:09:30.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:30.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:30.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:30.624 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:09:30.624 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:09:31.734 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:31.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:31.844 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:09:31.844 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:09:31.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:31.864 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:09:31.864 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:09:31.864 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:09:32.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:09:32.114 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:09:32.114 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:09:32.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:09:32.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:09:32.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:09:32.284 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:09:32.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:09:32.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:32.314 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:09:32.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:09:32.314 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:09:32.444 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:09:32.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:09:33.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:33.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:33.384 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:09:33.384 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:09:33.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:33.544 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:09:33.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:09:33.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:09:33.704 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:09:33.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:09:33.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:09:33.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:09:33.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:34.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:09:34.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:09:34.324 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:09:34.324 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:09:34.324 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 65° ===================
17-03-18 05:09:34.324 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:09:34.324 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:09:34.334 -07 000000581 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:09:34.334 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:09:34.334 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:09:34.334 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 05:09:34.344 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:09:34.344 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 65° ===================
17-03-18 05:09:34.344 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:09:34.344 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:09:35.174 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.960826,
17-03-18 05:09:36.734 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:36.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:40.534 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.997626,
17-03-18 05:09:41.734 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:41.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:45.894 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.990831,
17-03-18 05:09:46.734 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:46.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:51.254 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.989471,
17-03-18 05:09:51.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:51.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:09:56.614 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.983999,
17-03-18 05:09:56.734 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:09:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:01.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:01.974 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.005817,
17-03-18 05:10:04.354 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:10:04.354 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:10:04.354 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:10:04.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:04.484 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:10:04.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:10:04.484 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:10:04.614 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:10:04.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:05.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:05.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:05.224 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:10:05.224 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:10:05.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:05.384 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:10:05.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:10:05.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:05.544 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:10:05.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:10:05.544 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:10:05.674 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:10:05.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:06.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:06.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:06.164 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:10:06.164 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:10:06.164 -07 000000480 INF: WaitCommand(30000) start
17-03-18 05:10:06.164 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:10:06.164 -07 000000474 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:10:06.744 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:07.334 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.999021,
17-03-18 05:10:07.384 -07 000000474 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:10:07.384 -07 000000474 INF: LanePump: Xmit /1?\r
17-03-18 05:10:07.414 -07 000000474 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:10:07.414 -07 000000474 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:10:07.544 -07 000000474 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:10:07.584 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:09.924 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:09.954 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:10.374 -07 000000474 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:10.404 -07 000000474 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:10.404 -07 000000474 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:10:10.404 -07 000000474 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:10:10.404 -07 000000474 INF: ===================  ===================
17-03-18 05:10:11.734 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:11.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:12.694 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.994908,
17-03-18 05:10:16.734 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:16.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:18.054 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.023489,
17-03-18 05:10:21.734 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:21.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:23.414 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.986717,
17-03-18 05:10:26.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:26.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:28.774 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.979922,
17-03-18 05:10:31.734 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:34.134 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.994908,
17-03-18 05:10:36.174 -07 000000480 INF: WaitCommand(30000) end
17-03-18 05:10:36.174 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 22° ===================
17-03-18 05:10:36.174 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:10:36.174 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:10:36.184 -07 000000479 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:10:36.184 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 3 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:10:36.184 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:10:36.184 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 05:10:36.194 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:10:36.194 -07 000000610 INF: =================== Cycle #134, Flow Cell Temp 22° ===================
17-03-18 05:10:36.194 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:10:36.194 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:10:36.194 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:10:36.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:36.234 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:10:36.234 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:10:36.234 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:10:36.364 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:10:36.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:36.734 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1836, R2=1906, Total=3742. Warn if over 250 bubbles per interval.
17-03-18 05:10:39.494 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.996267,
17-03-18 05:10:39.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:39.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:39.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:40.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:40.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:40.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:40.464 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:10:40.464 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:10:40.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:40.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:10:40.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:10:40.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:40.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:10:40.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:10:40.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:10:40.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:10:40.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:41.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:41.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:41.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:10:41.404 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:10:41.734 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:10:41.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1837, R2=1907, Total=3744. Warn if over 250 bubbles per interval.
17-03-18 05:10:42.624 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:10:42.624 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:10:42.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:10:42.644 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:10:42.644 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:10:42.644 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:10:42.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:10:42.814 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:10:42.814 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:10:42.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:10:42.884 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:10:42.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:10:42.984 -07 000000610 INF: =================== Cycle #134, Pumping Reagent USM (2) ===================
17-03-18 05:10:42.984 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:10:42.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:43.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:10:43.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:10:43.014 -07 000000610 INF: =================== Cycle #134, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:10:43.144 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:10:43.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:44.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:44.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:44.854 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.983999,
17-03-18 05:10:45.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:45.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:45.104 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:10:45.104 -07 000000610 INF: =================== Cycle #134, Pumping Reagent USM (2) ===================
17-03-18 05:10:45.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:45.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:10:45.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:10:45.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:45.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:10:45.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:10:45.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:10:45.554 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:10:45.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:46.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:46.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:46.044 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:10:46.044 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:10:46.744 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1837, R2=1907, Total=3744. Warn if over 250 bubbles per interval.
17-03-18 05:10:47.264 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:10:47.264 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:10:47.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:10:47.284 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:10:47.284 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:10:47.284 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:10:47.434 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:10:47.454 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:10:47.454 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:10:47.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:10:47.524 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:10:47.524 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:10:47.624 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:10:47.624 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:10:47.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:47.654 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:10:47.654 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:10:47.654 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:10:47.784 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:10:47.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:48.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:48.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:48.724 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:10:48.724 -07 000000610 INF: =================== Cycle #134, Pumping Reagent PR2 (3) ===================
17-03-18 05:10:48.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:48.884 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:10:48.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:10:49.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:10:49.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:10:49.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:10:49.044 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:10:49.174 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:10:49.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:49.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:49.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:49.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:10:49.664 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:10:49.664 -07 000000447 INF: WaitCommand(10000) start
17-03-18 05:10:49.664 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:10:49.664 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:10:50.214 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.981281,
17-03-18 05:10:50.884 -07 000000618 INF: AsyncDelayTimer waited 1213ms
17-03-18 05:10:50.884 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 05:10:50.914 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:10:50.914 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:10:51.044 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:10:51.084 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:51.744 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:10:51.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1837, R2=1907, Total=3744. Warn if over 250 bubbles per interval.
17-03-18 05:10:52.614 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:52.644 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:10:53.064 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 05:10:53.094 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:10:53.094 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:10:53.094 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:10:53.094 -07 000000618 INF: ===================  ===================
17-03-18 05:10:55.574 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.990831,
17-03-18 05:10:56.744 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:10:56.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1907, Total=3745. Warn if over 250 bubbles per interval.
17-03-18 05:10:59.674 -07 000000447 INF: WaitCommand(10000) end
17-03-18 05:10:59.674 -07 000000610 INF: =================== Cycle #134, Imaging ===================
17-03-18 05:10:59.674 -07 000000610 INF: Imaging Cycle 134: ScanTilesCommand Cycle 134 time start.
17-03-18 05:10:59.674 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:10:59.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:10:59.704 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:10:59.704 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:10:59.704 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:11:00.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:11:00.024 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:11:00.024 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:11:00.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:11:00.094 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:11:00.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:00.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:00.094 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:11:00.094 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:00.094 -07 000000382 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:11:00.094 -07 000000480 INF: FPGA: Recv EXLED1ON 
17-03-18 05:11:00.104 -07 000000382 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:00.104 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:11:00.104 -07 000000625 INF: FPGA: Recv EXLED1ADCR 23161
17-03-18 05:11:00.114 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:00.114 -07 000000382 INF: RedLED: Using Red data: Photodiode ADC 23161 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-18 05:11:00.114 -07 000000382 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:11:00.114 -07 000000512 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:11:00.124 -07 000000382 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:00.124 -07 000000382 INF: RedLED: LED was on for 20 ms
17-03-18 05:11:00.124 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:11:00.124 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:11:00.124 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:00.124 -07 000000382 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:11:00.124 -07 000000461 INF: FPGA: Recv EXLED2ON 
17-03-18 05:11:00.134 -07 000000382 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:11:00.144 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:11:00.144 -07 000000474 INF: FPGA: Recv EXLED1ADCR 2096
17-03-18 05:11:00.154 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:00.154 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-18 05:11:00.154 -07 000000382 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:11:00.154 -07 000000467 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:11:00.164 -07 000000382 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:00.164 -07 000000382 INF: GreenLED: LED was on for 29 ms
17-03-18 05:11:00.164 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 38 ms.
17-03-18 05:11:00.164 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:11:00.164 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 05:11:00.174 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:00.174 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:11:00.674 -07 000000424 INF: FPGA: Recv EMOUT
17-03-18 05:11:00.674 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:11:00.674 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:11:00.674 -07 000000581 INF: FPGA: Recv EMCUR 
17-03-18 05:11:00.684 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:00.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:00.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126529140940076. ------
17-03-18 05:11:00.684 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:00.684 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17840 mm
17-03-18 05:11:00.684 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:00.684 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38971, sync = True, waitForSettling = False)
17-03-18 05:11:00.684 -07 000000502 INF: Z Motor: Moving to -0.178398 mm, started at -0.126529 mm, distance = -51.87 um
17-03-18 05:11:00.684 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:00.684 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:11:00.684 -07 000000474 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 05:11:00.694 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:00.694 -07 000000502 INF: FPGA: Xmit ZDACW 38971\n [Z Motor]
17-03-18 05:11:00.694 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:11:00.704 -07 000000502 INF: FPGA: 'ZDACW 38971' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:11:00.704 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:00.704 -07 000000512 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:11:00.714 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:00.714 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:11:00.714 -07 000000474 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:00.714 -07 000000474 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:11:00.714 -07 000000474 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:11:00.724 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:00.724 -07 000000626 INF: FPGA: Recv ZDACR 38971
17-03-18 05:11:00.734 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:00.734 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:11:00.734 -07 000000474 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:11:00.914 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:00.914 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:11:00.934 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.994908,
17-03-18 05:11:01.744 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1907, Total=3745. Warn if over 250 bubbles per interval.
17-03-18 05:11:02.414 -07 000000479 INF: FPGA: Recv YMVTO 122702 24777
17-03-18 05:11:02.414 -07 000000474 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 05:11:02.414 -07 000000474 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:11:02.414 -07 000000474 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:11:02.414 -07 000000474 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-18 05:11:05.264 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:05.264 -07 000000455 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:11:05.274 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.274 -07 000000474 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:05.304 -07 000000474 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:05.304 -07 000000474 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:11:05.304 -07 000000474 INF: Y Motor: Moved to 59.9102 after 4614 ms
17-03-18 05:11:05.304 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178398 mm (DAC = 38971)
17-03-18 05:11:05.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.304 -07 000000424 INF: FPGA: Recv ZSGSRD 37062
17-03-18 05:11:05.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:05.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.314 -07 000000479 INF: FPGA: Recv ZSGSRD 37061
17-03-18 05:11:05.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.324 -07 000000467 INF: FPGA: Recv ZSGSRD 37057
17-03-18 05:11:05.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.334 -07 000000569 INF: FPGA: Recv ZSGSRD 37060
17-03-18 05:11:05.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.344 -07 000000461 INF: FPGA: Recv ZSGSRD 37058
17-03-18 05:11:05.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.354 -07 000000455 INF: FPGA: Recv ZSGSRD 37056
17-03-18 05:11:05.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.364 -07 000000479 INF: FPGA: Recv ZSGSRD 37065
17-03-18 05:11:05.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.374 -07 000000467 INF: FPGA: Recv ZSGSRD 37055
17-03-18 05:11:05.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.384 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.384 -07 000000626 INF: FPGA: Recv ZSGSRD 37063
17-03-18 05:11:05.394 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.394 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:05.394 -07 000000606 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:11:05.404 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:05.404 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:05.404 -07 000000618 INF: FPGA: Recv ZPIEZORD 33298
17-03-18 05:11:05.414 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:05.414 -07 000000447 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.3 V.
17-03-18 05:11:05.414 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37061 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37060 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37055 (-177.5 uncal um), Max = 37071 (-177.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:11:05.414 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37061, posNoise = 10, negNoise = 6
17-03-18 05:11:05.414 -07 000000447 INF: Z Motor: After move to -0.178398, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:05.414 -07 000000447 INF: Z Motor: Settle wait time = 4618 ms, measure time = 105 ms (allowed 150 ms), total time = 4723 ms
17-03-18 05:11:05.414 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:05.464 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-18 05:11:05.464 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:05.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:05.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:05.464 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:05.464 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:05.464 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:05.464 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:05.464 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:05.464 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:11:05.494 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 05:11:05.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:05.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:11:05.494 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:05.504 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:11:05.504 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-18 05:11:05.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:05.554 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:05.854 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:05.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:05.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:05.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1166012496, 0x0, 559484976) start.
17-03-18 05:11:05.894 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:05.894 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:05.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 05:11:05.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1166012496, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:11:05.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:05.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:05.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:11:05.994 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:05.994 -07 000000608 INF: Image SNR check: start
17-03-18 05:11:05.994 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:06.004 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:06.004 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:06.004 -07 000000608 INF: Image SNR check: pass  [peak (Max-Min)=130.18]
17-03-18 05:11:06.004 -07 000000608 INF: Autofocus start
17-03-18 05:11:06.004 -07 000000608 INF: MeasureProfile start
17-03-18 05:11:06.024 -07 000000608 INF: MeasureProfile done
17-03-18 05:11:06.024 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:06.024 -07 000000608 INF: Autofocus finished
17-03-18 05:11:06.204 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:06.204 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:06.204 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178411078196938. ----------
17-03-18 05:11:06.204 -07 000000610 INF: Cycle	134	Tile	1	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:06.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = True)
17-03-18 05:11:06.214 -07 000000610 INF: Z Motor: Moving to -0.171600 mm, started at -0.178411 mm, distance = 6.81 um
17-03-18 05:11:06.214 -07 000000610 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 05:11:06.214 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:11:06.224 -07 000000610 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:06.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:06.224 -07 000000569 INF: FPGA: Recv ZDACR 37486
17-03-18 05:11:06.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:06.294 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.977204,
17-03-18 05:11:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.384 -07 000000467 INF: FPGA: Recv ZSGSRD 35997
17-03-18 05:11:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.394 -07 000000608 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:11:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.404 -07 000000581 INF: FPGA: Recv ZSGSRD 36001
17-03-18 05:11:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36001
17-03-18 05:11:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.424 -07 000000461 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:11:06.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.434 -07 000000467 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:11:06.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.444 -07 000000479 INF: FPGA: Recv ZSGSRD 36003
17-03-18 05:11:06.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.454 -07 000000606 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:11:06.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.464 -07 000000618 INF: FPGA: Recv ZSGSRD 36001
17-03-18 05:11:06.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:06.474 -07 000000480 INF: FPGA: Recv ZSGSRD 36003
17-03-18 05:11:06.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:06.484 -07 000000447 INF: FPGA: Recv ZPIEZORD 31881
17-03-18 05:11:06.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:06.494 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.1 V.
17-03-18 05:11:06.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35997 (-170.7 uncal um), Max = 36009 (-170.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:11:06.494 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 7, negNoise = 5
17-03-18 05:11:06.494 -07 000000610 INF: Z Motor: After move to -0.171600, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:06.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:11:06.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:06.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:06.494 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:06.494 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:06.494 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:06.494 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:06.494 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:06.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:06.494 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:11:06.494 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:06.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:06.494 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:11:06.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:06.504 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:06.514 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:11:06.514 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:11:06.524 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:11:06.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:06.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:11:06.524 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:06.534 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:11:06.534 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 05:11:06.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37663 150\n [Camera]
17-03-18 05:11:06.734 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:06.744 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:11:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:07.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:07.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:07.174 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:07.174 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:07.174 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:11:07.174 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:07.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:07.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:07.174 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:07.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 05:11:07.364 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37663 819
17-03-18 05:11:07.514 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:07.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:11:07.574 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:11:07.574 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:07.574 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:11:07.574 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:11:07.574 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:07.584 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:11:07.584 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:11:07.584 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:11:07.594 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:11:07.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:07.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:07.724 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:07.854 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:07.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:07.854 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:07.854 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:07.854 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:11:07.854 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:07.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:11:07.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:07.914 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:07.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37663 150' command took 2 ms to send, 1366 ms to get response, and 1377 ms overall
17-03-18 05:11:07.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:07.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171607837538813. ------
17-03-18 05:11:07.924 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17783 mm
17-03-18 05:11:07.924 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:07.924 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:07.924 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:11:07.924 -07 000000479 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:11:07.924 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:07.924 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38847, sync = True, waitForSettling = False)
17-03-18 05:11:07.924 -07 000000579 INF: Z Motor: Moving to -0.177830 mm, started at -0.171608 mm, distance = -6.22 um
17-03-18 05:11:07.934 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:11:07.934 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:07.934 -07 000000501 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:11:07.944 -07 000000579 INF: FPGA: Xmit ZDACW 38847\n [Z Motor]
17-03-18 05:11:07.944 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:11:07.944 -07 000000479 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:07.944 -07 000000479 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:07.944 -07 000000479 INF: Y Motor: Moving 1332 steps1
17-03-18 05:11:07.944 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:11:07.954 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:07.954 -07 000000579 INF: FPGA: 'ZDACW 38847' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:11:07.964 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:07.974 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:07.974 -07 000000455 INF: FPGA: Recv ZDACR 38847
17-03-18 05:11:07.984 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:07.984 -07 000000579 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:11:08.154 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:08.154 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:11:08.254 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:11:08.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:11:08.254 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:11:08.254 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:08.254 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:11:08.254 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:08.264 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:08.264 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 05:11:08.264 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:08.264 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:11:08.334 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:11:08.334 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:11:08.374 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:08.384 -07 000000512 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:11:08.384 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:11:08.384 -07 000000479 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:08.384 -07 000000479 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:11:08.384 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.107 mm/sec
17-03-18 05:11:09.334 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:09.334 -07 000000467 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:11:09.344 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.344 -07 000000479 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:09.374 -07 000000479 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:09.374 -07 000000479 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:11:09.374 -07 000000479 INF: Y Motor: Moved to 60.7324 after 1448 ms (table move)
17-03-18 05:11:09.374 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177830 mm (DAC = 38847)
17-03-18 05:11:09.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.384 -07 000000618 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:11:09.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 05:11:09.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.384 -07 000000579 INF: FPGA: Recv ZSGSRD 36974
17-03-18 05:11:09.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:09.394 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.394 -07 000000581 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:11:09.404 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.404 -07 000000455 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:11:09.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.414 -07 000000626 INF: FPGA: Recv ZSGSRD 36972
17-03-18 05:11:09.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.424 -07 000000424 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:11:09.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.434 -07 000000608 INF: FPGA: Recv ZSGSRD 36967
17-03-18 05:11:09.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.444 -07 000000581 INF: FPGA: Recv ZSGSRD 36968
17-03-18 05:11:09.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.454 -07 000000501 INF: FPGA: Recv ZSGSRD 36974
17-03-18 05:11:09.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:09.464 -07 000000626 INF: FPGA: Recv ZSGSRD 36975
17-03-18 05:11:09.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.474 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:09.474 -07 000000606 INF: FPGA: Recv ZPIEZORD 33193
17-03-18 05:11:09.484 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:09.484 -07 000000474 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.4 V.
17-03-18 05:11:09.484 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36972 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36972 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36967 (-176.9 uncal um), Max = 36977 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:11:09.484 -07 000000474 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36972, posNoise = 5, negNoise = 5
17-03-18 05:11:09.484 -07 000000474 INF: Z Motor: After move to -0.177830, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:09.484 -07 000000474 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-18 05:11:09.484 -07 000000474 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:09.534 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 05:11:09.534 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:09.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:09.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:09.534 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:09.534 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:09.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:09.534 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:09.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:11:09.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:09.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:09.544 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:09.554 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:11:09.554 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:11:09.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:09.604 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:09.904 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:09.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:09.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:09.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 05:11:09.934 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:09.944 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:09.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:11:10.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:11:10.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:10.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:10.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:11:10.044 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:10.044 -07 000000606 INF: Autofocus start
17-03-18 05:11:10.044 -07 000000606 INF: MeasureProfile start
17-03-18 05:11:10.044 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:10.054 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:10.054 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:10.054 -07 000000606 INF: MeasureProfile done
17-03-18 05:11:10.054 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:10.054 -07 000000606 INF: Autofocus finished
17-03-18 05:11:10.254 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:10.254 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:10.254 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177839323316321. ----------
17-03-18 05:11:10.254 -07 000000610 INF: Cycle	134	Tile	2	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:10.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37362, sync = True, waitForSettling = True)
17-03-18 05:11:10.264 -07 000000610 INF: Z Motor: Moving to -0.171032 mm, started at -0.177839 mm, distance = 6.81 um
17-03-18 05:11:10.264 -07 000000610 INF: FPGA: Xmit ZDACW 37362\n [Z Motor]
17-03-18 05:11:10.264 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:11:10.274 -07 000000610 INF: FPGA: 'ZDACW 37362' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:10.274 -07 000000447 INF: FPGA: Recv ZDACR 37362
17-03-18 05:11:10.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:10.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.434 -07 000000625 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:11:10.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:10.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:11:10.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:11:10.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.464 -07 000000579 INF: FPGA: Recv ZSGSRD 35906
17-03-18 05:11:10.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:11:10.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.484 -07 000000608 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:11:10.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:11:10.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:10.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:11:10.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.514 -07 000000625 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:11:10.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:10.524 -07 000000474 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:11:10.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:10.534 -07 000000461 INF: FPGA: Recv ZPIEZORD 31727
17-03-18 05:11:10.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:10.544 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.2 V.
17-03-18 05:11:10.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35906 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:11:10.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 4, negNoise = 7
17-03-18 05:11:10.544 -07 000000610 INF: Z Motor: After move to -0.171032, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:10.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:11:10.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:10.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:10.544 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:10.544 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:10.544 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:10.544 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:10.544 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:10.544 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:10.544 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:10.544 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:10.544 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:10.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:10.554 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:10.554 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:10.554 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:10.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:10.564 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:11:10.564 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:11:10.564 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:11:10.564 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:11:10.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37538 150\n [Camera]
17-03-18 05:11:10.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:11.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:11.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:11.204 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:11.204 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:11.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:11.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:11.204 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:11.214 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113831184, 0x0, 391868352) start.
17-03-18 05:11:11.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:11.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:11:11.394 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37538 819
17-03-18 05:11:11.544 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:11.604 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113831184, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:11:11.604 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:11:11.604 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:11.604 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:11.604 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:11:11.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:11:11.614 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:11:11.614 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:11.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:11.624 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:11:11.654 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.986717,
17-03-18 05:11:11.744 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:11.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:11.754 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:11.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:11.754 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:11.874 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:11.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:11.874 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:11.884 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:11.884 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 05:11:11.884 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:11.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:11:11.944 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:11:11.944 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:11.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37538 150' command took 2 ms to send, 1368 ms to get response, and 1378 ms overall
17-03-18 05:11:11.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:11.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171036082658196. ------
17-03-18 05:11:11.954 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:11.954 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17782 mm
17-03-18 05:11:11.954 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:11.954 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:11:11.954 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:11:11.954 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:11.954 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38846, sync = True, waitForSettling = False)
17-03-18 05:11:11.954 -07 000000579 INF: Z Motor: Moving to -0.177826 mm, started at -0.171036 mm, distance = -6.79 um
17-03-18 05:11:11.964 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:11.964 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:11.964 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:11:11.974 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:11:11.974 -07 000000480 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:11.974 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:11.974 -07 000000480 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:11:11.974 -07 000000579 INF: FPGA: Xmit ZDACW 38846\n [Z Motor]
17-03-18 05:11:11.974 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:11:11.984 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:11.984 -07 000000579 INF: FPGA: 'ZDACW 38846' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:11:11.994 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:12.004 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:12.004 -07 000000569 INF: FPGA: Recv ZDACR 38846
17-03-18 05:11:12.014 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:12.014 -07 000000579 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:11:12.184 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:12.184 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 05:11:12.274 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:11:12.274 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:11:12.274 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:12.284 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:11:12.284 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:11:12.284 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:12.284 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:12.284 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:12.284 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 05:11:12.294 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:11:12.364 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:11:12.364 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:11:12.414 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:12.424 -07 000000625 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:11:12.424 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:11:12.424 -07 000000480 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:12.424 -07 000000480 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:11:12.424 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:11:13.374 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:13.374 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:11:13.384 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:13.384 -07 000000480 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:13.414 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:13.414 -07 000000480 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:13.414 -07 000000480 INF: Y Motor: Moved to 61.5630 after 1454 ms (table move)
17-03-18 05:11:13.414 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177826 mm (DAC = 38846)
17-03-18 05:11:13.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.414 -07 000000447 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:11:13.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:13.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.424 -07 000000625 INF: FPGA: Recv ZSGSRD 36969
17-03-18 05:11:13.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.434 -07 000000467 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:11:13.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.444 -07 000000479 INF: FPGA: Recv ZSGSRD 36971
17-03-18 05:11:13.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.454 -07 000000608 INF: FPGA: Recv ZSGSRD 36969
17-03-18 05:11:13.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.464 -07 000000569 INF: FPGA: Recv ZSGSRD 36977
17-03-18 05:11:13.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.474 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.474 -07 000000625 INF: FPGA: Recv ZSGSRD 36968
17-03-18 05:11:13.484 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.484 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.484 -07 000000461 INF: FPGA: Recv ZSGSRD 36972
17-03-18 05:11:13.494 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.494 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.494 -07 000000424 INF: FPGA: Recv ZSGSRD 36967
17-03-18 05:11:13.504 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.504 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:13.504 -07 000000608 INF: FPGA: Recv ZSGSRD 36970
17-03-18 05:11:13.514 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.514 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:13.514 -07 000000569 INF: FPGA: Recv ZPIEZORD 33182
17-03-18 05:11:13.524 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:13.524 -07 000000474 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.4 V.
17-03-18 05:11:13.524 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36970 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36970 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36967 (-176.9 uncal um), Max = 36977 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:11:13.524 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36970, posNoise = 7, negNoise = 3
17-03-18 05:11:13.524 -07 000000474 INF: Z Motor: After move to -0.177826, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:13.524 -07 000000474 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:11:13.524 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:13.574 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:11:13.574 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:13.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:13.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:13.574 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:13.574 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:13.584 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:13.584 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:13.584 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:13.584 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:13.584 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:13.584 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:13.594 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:11:13.594 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:11:13.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:13.634 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:13.934 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:13.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:13.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:13.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 05:11:13.974 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:13.974 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:13.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:11:14.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:11:14.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:14.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:14.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:11:14.074 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:14.074 -07 000000581 INF: Autofocus start
17-03-18 05:11:14.074 -07 000000581 INF: MeasureProfile start
17-03-18 05:11:14.084 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:14.084 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:14.084 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:14.094 -07 000000581 INF: MeasureProfile done
17-03-18 05:11:14.094 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:14.094 -07 000000581 INF: Autofocus finished
17-03-18 05:11:14.284 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:14.284 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:11:14.284 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177826474892038. ----------
17-03-18 05:11:14.294 -07 000000610 INF: Cycle	134	Tile	3	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:14.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37361, sync = True, waitForSettling = True)
17-03-18 05:11:14.294 -07 000000610 INF: Z Motor: Moving to -0.171028 mm, started at -0.177826 mm, distance = 6.80 um
17-03-18 05:11:14.294 -07 000000610 INF: FPGA: Xmit ZDACW 37361\n [Z Motor]
17-03-18 05:11:14.294 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:11:14.304 -07 000000610 INF: FPGA: 'ZDACW 37361' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:14.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:14.304 -07 000000467 INF: FPGA: Recv ZDACR 37361
17-03-18 05:11:14.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.464 -07 000000618 INF: FPGA: Recv ZSGSRD 35908
17-03-18 05:11:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.474 -07 000000569 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:11:14.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.484 -07 000000606 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:11:14.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.494 -07 000000479 INF: FPGA: Recv ZSGSRD 35909
17-03-18 05:11:14.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35908
17-03-18 05:11:14.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.514 -07 000000608 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:11:14.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.524 -07 000000606 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:11:14.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.534 -07 000000579 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:11:14.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.544 -07 000000461 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:11:14.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:14.554 -07 000000618 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:11:14.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:14.564 -07 000000625 INF: FPGA: Recv ZPIEZORD 31767
17-03-18 05:11:14.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:14.574 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-18 05:11:14.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35912 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35911 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35908 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:11:14.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35912, posNoise = 5, negNoise = 4
17-03-18 05:11:14.574 -07 000000610 INF: Z Motor: After move to -0.171028, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:14.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:11:14.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:14.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:14.574 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:14.574 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:14.574 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:14.574 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:14.584 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:14.584 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:14.584 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:14.584 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:14.584 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:11:14.584 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:14.584 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:14.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:14.584 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:14.584 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:14.594 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:11:14.594 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:14.594 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:11:14.594 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:14.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37537 150\n [Camera]
17-03-18 05:11:14.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:15.234 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:15.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:15.234 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:15.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:15.234 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:15.234 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:15.234 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:11:15.234 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:15.234 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:15.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1109425880, 0x0, 418435064) start.
17-03-18 05:11:15.424 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37537 819
17-03-18 05:11:15.574 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:15.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1109425880, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:11:15.614 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:11:15.614 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:15.614 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:11:15.614 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:11:15.614 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:15.614 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:15.624 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:15.624 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:11:15.624 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:11:15.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:15.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:15.784 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:15.904 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:15.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:15.904 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:15.904 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:15.904 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:15.904 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 05:11:15.904 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:11:15.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:11:15.974 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:15.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37537 150' command took 2 ms to send, 1374 ms to get response, and 1378 ms overall
17-03-18 05:11:15.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:15.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171029658446054. ------
17-03-18 05:11:15.984 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:15.984 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17728 mm
17-03-18 05:11:15.984 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:15.984 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:11:15.984 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:11:15.984 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38726, sync = True, waitForSettling = False)
17-03-18 05:11:15.984 -07 000000579 INF: Z Motor: Moving to -0.177276 mm, started at -0.171030 mm, distance = -6.25 um
17-03-18 05:11:15.984 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:15.994 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:15.994 -07 000000579 INF: FPGA: Xmit ZDACW 38726\n [Z Motor]
17-03-18 05:11:15.994 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:11:16.004 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:16.004 -07 000000579 INF: FPGA: 'ZDACW 38726' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:11:16.004 -07 000000512 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:11:16.014 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:16.014 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:11:16.014 -07 000000569 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:16.014 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:16.014 -07 000000569 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:11:16.024 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:16.024 -07 000000455 INF: FPGA: Recv ZDACR 38726
17-03-18 05:11:16.034 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:16.034 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:16.034 -07 000000579 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:11:16.214 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:16.214 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-18 05:11:16.284 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:11:16.284 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:11:16.284 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:16.294 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:16.294 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:11:16.294 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:11:16.294 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:16.294 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:16.294 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 05:11:16.294 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:11:16.404 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:11:16.404 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:11:16.454 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:16.464 -07 000000455 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:11:16.464 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:11:16.464 -07 000000569 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:16.464 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:11:16.464 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:11:16.744 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:16.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:17.014 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.99219,
17-03-18 05:11:17.414 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:17.414 -07 000000625 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:11:17.424 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:17.424 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:17.454 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:17.454 -07 000000569 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:11:17.454 -07 000000569 INF: Y Motor: Moved to 62.3950 after 1467 ms (table move)
17-03-18 05:11:17.454 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177276 mm (DAC = 38726)
17-03-18 05:11:17.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.454 -07 000000501 INF: FPGA: Recv ZSGSRD 36895
17-03-18 05:11:17.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:17.464 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.464 -07 000000512 INF: FPGA: Recv ZSGSRD 36883
17-03-18 05:11:17.474 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.474 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.474 -07 000000467 INF: FPGA: Recv ZSGSRD 36892
17-03-18 05:11:17.484 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.484 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.484 -07 000000501 INF: FPGA: Recv ZSGSRD 36881
17-03-18 05:11:17.494 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.494 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.494 -07 000000606 INF: FPGA: Recv ZSGSRD 36877
17-03-18 05:11:17.504 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.504 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.504 -07 000000625 INF: FPGA: Recv ZSGSRD 36886
17-03-18 05:11:17.514 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.514 -07 000000581 INF: FPGA: Recv ZSGSRD 36889
17-03-18 05:11:17.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.524 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.524 -07 000000467 INF: FPGA: Recv ZSGSRD 36886
17-03-18 05:11:17.534 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.534 -07 000000480 INF: FPGA: Recv ZSGSRD 36886
17-03-18 05:11:17.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:17.544 -07 000000606 INF: FPGA: Recv ZSGSRD 36890
17-03-18 05:11:17.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.554 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:17.554 -07 000000479 INF: FPGA: Recv ZPIEZORD 33059
17-03-18 05:11:17.564 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:17.564 -07 000000424 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.5 V.
17-03-18 05:11:17.564 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36886 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36886 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36877 (-176.3 uncal um), Max = 36895 (-176.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:11:17.564 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36886, posNoise = 9, negNoise = 9
17-03-18 05:11:17.564 -07 000000424 INF: Z Motor: After move to -0.177276, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:17.564 -07 000000424 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:11:17.564 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:17.614 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:11:17.614 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:17.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:17.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:17.614 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:17.614 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:17.614 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:17.624 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:17.624 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:11:17.624 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:17.624 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:17.624 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:17.634 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:11:17.634 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:11:17.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:17.674 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:17.974 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:17.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:17.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:17.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2204190424, 0x0, 559484976) start.
17-03-18 05:11:18.014 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:18.014 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:18.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 05:11:18.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2204190424, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:11:18.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:18.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:18.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:11:18.114 -07 000000579 INF: Autofocus start
17-03-18 05:11:18.114 -07 000000579 INF: MeasureProfile start
17-03-18 05:11:18.114 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:18.124 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:18.124 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:18.124 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:18.134 -07 000000579 INF: MeasureProfile done
17-03-18 05:11:18.134 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:18.134 -07 000000579 INF: Autofocus finished
17-03-18 05:11:18.324 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:18.334 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 211 ms overall
17-03-18 05:11:18.334 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17728684107213. ----------
17-03-18 05:11:18.334 -07 000000610 INF: Cycle	134	Tile	4	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:18.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37241, sync = True, waitForSettling = True)
17-03-18 05:11:18.344 -07 000000610 INF: Z Motor: Moving to -0.170478 mm, started at -0.177287 mm, distance = 6.81 um
17-03-18 05:11:18.344 -07 000000610 INF: FPGA: Xmit ZDACW 37241\n [Z Motor]
17-03-18 05:11:18.344 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:11:18.354 -07 000000610 INF: FPGA: 'ZDACW 37241' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:18.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:18.354 -07 000000424 INF: FPGA: Recv ZDACR 37241
17-03-18 05:11:18.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:18.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.514 -07 000000382 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:11:18.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:18.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.524 -07 000000467 INF: FPGA: Recv ZSGSRD 35830
17-03-18 05:11:18.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.534 -07 000000479 INF: FPGA: Recv ZSGSRD 35826
17-03-18 05:11:18.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.544 -07 000000512 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:11:18.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.554 -07 000000626 INF: FPGA: Recv ZSGSRD 35826
17-03-18 05:11:18.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.564 -07 000000569 INF: FPGA: Recv ZSGSRD 35822
17-03-18 05:11:18.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.574 -07 000000581 INF: FPGA: Recv ZSGSRD 35824
17-03-18 05:11:18.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.584 -07 000000447 INF: FPGA: Recv ZSGSRD 35830
17-03-18 05:11:18.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.594 -07 000000501 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:11:18.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:18.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35827
17-03-18 05:11:18.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:18.614 -07 000000569 INF: FPGA: Recv ZPIEZORD 31618
17-03-18 05:11:18.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:18.624 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.3 V.
17-03-18 05:11:18.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35828 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35822 (-169.6 uncal um), Max = 35834 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:11:18.624 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35828, posNoise = 6, negNoise = 6
17-03-18 05:11:18.624 -07 000000610 INF: Z Motor: After move to -0.170478, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:18.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:11:18.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:18.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:18.624 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:18.624 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:18.624 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:18.624 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:18.624 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:18.624 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:18.624 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:18.624 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:18.624 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:18.624 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:18.634 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:18.634 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:18.634 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:18.634 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:18.644 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:11:18.644 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:18.644 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:11:18.644 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:18.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37417 150\n [Camera]
17-03-18 05:11:18.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:19.274 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:19.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:19.274 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:19.274 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:19.274 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:11:19.274 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:19.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:19.284 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:19.284 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:19.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:11:19.464 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37417 819
17-03-18 05:11:19.614 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:19.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:11:19.664 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:11:19.664 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:19.674 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:19.674 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:11:19.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 505 ms.
17-03-18 05:11:19.784 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 05:11:19.784 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:19.784 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:11:19.794 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 05:11:19.824 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:19.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:19.824 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:19.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:19.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:19.834 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:19.834 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:19.834 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 05:11:19.834 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:19.834 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:11:20.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:20.024 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:20.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37417 150' command took 2 ms to send, 1370 ms to get response, and 1377 ms overall
17-03-18 05:11:20.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:20.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170490024626147. ------
17-03-18 05:11:20.024 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:20.024 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17679 mm
17-03-18 05:11:20.024 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:20.034 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:20.034 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:20.034 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:20.034 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:11:20.034 -07 000000424 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:11:20.034 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38620, sync = True, waitForSettling = False)
17-03-18 05:11:20.034 -07 000000461 INF: Z Motor: Moving to -0.176791 mm, started at -0.170490 mm, distance = -6.30 um
17-03-18 05:11:20.044 -07 000000461 INF: FPGA: Xmit ZDACW 38620\n [Z Motor]
17-03-18 05:11:20.044 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:11:20.054 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:20.054 -07 000000461 INF: FPGA: 'ZDACW 38620' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:11:20.054 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:11:20.064 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:11:20.064 -07 000000424 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:20.064 -07 000000424 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:20.064 -07 000000424 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:11:20.064 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:20.064 -07 000000474 INF: FPGA: Recv ZDACR 38620
17-03-18 05:11:20.074 -07 000000461 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:20.074 -07 000000461 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:11:20.074 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:20.234 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:20.234 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:20.234 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:11:20.234 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:11:20.234 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:11:20.234 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:20.234 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:11:20.234 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:20.244 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:20.244 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:20.244 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:11:20.254 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:11:20.444 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:11:20.444 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 05:11:20.494 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:20.504 -07 000000455 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:11:20.504 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:20.504 -07 000000424 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:20.504 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:11:20.504 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 05:11:21.454 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:21.454 -07 000000618 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:11:21.464 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:21.464 -07 000000424 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:21.494 -07 000000424 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:21.494 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:21.494 -07 000000424 INF: Y Motor: Moved to 63.2227 after 1458 ms (table move)
17-03-18 05:11:21.494 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176791 mm (DAC = 38620)
17-03-18 05:11:21.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.494 -07 000000608 INF: FPGA: Recv ZSGSRD 36821
17-03-18 05:11:21.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:21.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.504 -07 000000502 INF: FPGA: Recv ZSGSRD 36810
17-03-18 05:11:21.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.514 -07 000000447 INF: FPGA: Recv ZSGSRD 36816
17-03-18 05:11:21.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.524 -07 000000382 INF: FPGA: Recv ZSGSRD 36807
17-03-18 05:11:21.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.534 -07 000000424 INF: FPGA: Recv ZSGSRD 36810
17-03-18 05:11:21.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.544 -07 000000608 INF: FPGA: Recv ZSGSRD 36806
17-03-18 05:11:21.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.554 -07 000000461 INF: FPGA: Recv ZSGSRD 36811
17-03-18 05:11:21.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.564 -07 000000447 INF: FPGA: Recv ZSGSRD 36809
17-03-18 05:11:21.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.584 -07 000000608 INF: FPGA: Recv ZSGSRD 36804
17-03-18 05:11:21.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:21.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:21.594 -07 000000455 INF: FPGA: Recv ZSGSRD 36814
17-03-18 05:11:21.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.604 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:21.604 -07 000000424 INF: FPGA: Recv ZPIEZORD 32936
17-03-18 05:11:21.614 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:21.614 -07 000000467 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.6 V.
17-03-18 05:11:21.614 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36811 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36810 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36804 (-175.9 uncal um), Max = 36821 (-176.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:11:21.614 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36811, posNoise = 10, negNoise = 7
17-03-18 05:11:21.614 -07 000000467 INF: Z Motor: After move to -0.176791, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:21.614 -07 000000467 INF: Z Motor: Settle wait time = 1461 ms, measure time = 115 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:11:21.614 -07 000000467 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:21.654 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:11:21.654 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:21.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:21.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:21.654 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:21.654 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:21.654 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:21.654 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:21.654 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:21.664 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:21.664 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:21.664 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:21.674 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:11:21.674 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:11:21.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:21.724 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:21.744 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:21.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:22.024 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:22.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:22.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:22.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 05:11:22.064 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:22.064 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:22.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:11:22.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:11:22.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:22.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:22.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:11:22.164 -07 000000581 INF: Autofocus start
17-03-18 05:11:22.164 -07 000000581 INF: MeasureProfile start
17-03-18 05:11:22.164 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:22.164 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:22.174 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:22.174 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:22.174 -07 000000581 INF: MeasureProfile done
17-03-18 05:11:22.174 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:22.174 -07 000000581 INF: Autofocus finished
17-03-18 05:11:22.374 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.004458,
17-03-18 05:11:22.374 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:22.374 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:11:22.374 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176805025161498. ----------
17-03-18 05:11:22.374 -07 000000610 INF: Cycle	134	Tile	5	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:22.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37135, sync = True, waitForSettling = True)
17-03-18 05:11:22.384 -07 000000610 INF: Z Motor: Moving to -0.169993 mm, started at -0.176805 mm, distance = 6.81 um
17-03-18 05:11:22.404 -07 000000610 INF: FPGA: Xmit ZDACW 37135\n [Z Motor]
17-03-18 05:11:22.404 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:11:22.414 -07 000000610 INF: FPGA: 'ZDACW 37135' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:11:22.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:22.414 -07 000000479 INF: FPGA: Recv ZDACR 37135
17-03-18 05:11:22.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:22.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.574 -07 000000501 INF: FPGA: Recv ZSGSRD 35749
17-03-18 05:11:22.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:22.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.584 -07 000000502 INF: FPGA: Recv ZSGSRD 35748
17-03-18 05:11:22.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.594 -07 000000424 INF: FPGA: Recv ZSGSRD 35752
17-03-18 05:11:22.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.604 -07 000000569 INF: FPGA: Recv ZSGSRD 35754
17-03-18 05:11:22.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.614 -07 000000608 INF: FPGA: Recv ZSGSRD 35751
17-03-18 05:11:22.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.624 -07 000000625 INF: FPGA: Recv ZSGSRD 35753
17-03-18 05:11:22.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.634 -07 000000512 INF: FPGA: Recv ZSGSRD 35753
17-03-18 05:11:22.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.644 -07 000000480 INF: FPGA: Recv ZSGSRD 35752
17-03-18 05:11:22.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35753
17-03-18 05:11:22.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:22.664 -07 000000467 INF: FPGA: Recv ZSGSRD 35743
17-03-18 05:11:22.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:22.674 -07 000000581 INF: FPGA: Recv ZPIEZORD 31539
17-03-18 05:11:22.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:22.684 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.3 V.
17-03-18 05:11:22.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35751 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35752 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35754 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:11:22.684 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35751, posNoise = 3, negNoise = 8
17-03-18 05:11:22.684 -07 000000610 INF: Z Motor: After move to -0.169993, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:22.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-18 05:11:22.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:22.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:22.684 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:22.684 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:22.684 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:22.684 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:22.684 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:22.684 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:22.684 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:11:22.684 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:22.684 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:22.684 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:22.684 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:22.684 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:22.694 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:11:22.694 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:22.694 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:11:22.694 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:22.704 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:11:22.704 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:11:22.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37312 150\n [Camera]
17-03-18 05:11:22.904 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:23.334 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:23.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:23.334 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:23.334 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:23.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:11:23.334 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:23.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:23.344 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:23.344 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:23.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:11:23.524 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37312 819
17-03-18 05:11:23.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:23.714 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:11:23.714 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:11:23.714 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:23.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:11:23.714 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:11:23.714 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:23.724 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:23.724 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:23.724 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:11:23.724 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:11:23.894 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1180
17-03-18 05:11:23.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1180
17-03-18 05:11:23.894 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:23.894 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:23.894 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:11:23.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1180
17-03-18 05:11:23.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1180
17-03-18 05:11:23.894 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:23.894 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:23.894 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:11:24.074 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:24.084 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:24.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37312 150' command took 2 ms to send, 1370 ms to get response, and 1377 ms overall
17-03-18 05:11:24.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:24.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.169995360291231. ------
17-03-18 05:11:24.084 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:24.084 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17635 mm
17-03-18 05:11:24.084 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:24.084 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:11:24.084 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:11:24.084 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38524, sync = True, waitForSettling = False)
17-03-18 05:11:24.084 -07 000000579 INF: Z Motor: Moving to -0.176352 mm, started at -0.169995 mm, distance = -6.36 um
17-03-18 05:11:24.084 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:24.094 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:24.094 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:24.094 -07 000000382 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:11:24.104 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:11:24.104 -07 000000501 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:24.104 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:24.104 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:24.104 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:11:24.114 -07 000000579 INF: FPGA: Xmit ZDACW 38524\n [Z Motor]
17-03-18 05:11:24.114 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:11:24.124 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:24.124 -07 000000579 INF: FPGA: 'ZDACW 38524' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:11:24.134 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:24.134 -07 000000625 INF: FPGA: Recv ZDACR 38524
17-03-18 05:11:24.144 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:11:24.144 -07 000000579 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:11:24.294 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:11:24.294 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:11:24.294 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:24.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:11:24.294 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:11:24.294 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:24.304 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:11:24.304 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:11:24.304 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:24.304 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:24.304 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 05:11:24.304 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:11:24.504 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:11:24.504 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 397 ms overall
17-03-18 05:11:24.554 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:24.554 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:11:24.564 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:24.564 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:24.564 -07 000000501 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:11:24.564 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:11:25.514 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:25.514 -07 000000625 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:11:25.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.524 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:25.554 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:25.554 -07 000000501 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:25.554 -07 000000501 INF: Y Motor: Moved to 64.0562 after 1462 ms (table move)
17-03-18 05:11:25.554 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176352 mm (DAC = 38524)
17-03-18 05:11:25.554 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.554 -07 000000579 INF: FPGA: Recv ZSGSRD 36749
17-03-18 05:11:25.564 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:25.564 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.564 -07 000000479 INF: FPGA: Recv ZSGSRD 36739
17-03-18 05:11:25.574 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.574 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.574 -07 000000461 INF: FPGA: Recv ZSGSRD 36744
17-03-18 05:11:25.584 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.584 -07 000000608 INF: FPGA: Recv ZSGSRD 36742
17-03-18 05:11:25.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.594 -07 000000455 INF: FPGA: Recv ZSGSRD 36745
17-03-18 05:11:25.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.604 -07 000000625 INF: FPGA: Recv ZSGSRD 36752
17-03-18 05:11:25.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.614 -07 000000480 INF: FPGA: Recv ZSGSRD 36739
17-03-18 05:11:25.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.624 -07 000000626 INF: FPGA: Recv ZSGSRD 36735
17-03-18 05:11:25.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.634 -07 000000581 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:11:25.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:25.644 -07 000000579 INF: FPGA: Recv ZSGSRD 36737
17-03-18 05:11:25.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.654 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:25.654 -07 000000479 INF: FPGA: Recv ZPIEZORD 32862
17-03-18 05:11:25.664 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:25.664 -07 000000569 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.6 V.
17-03-18 05:11:25.664 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36742 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36740 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36735 (-175.4 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:11:25.664 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36742, posNoise = 10, negNoise = 7
17-03-18 05:11:25.664 -07 000000569 INF: Z Motor: After move to -0.176352, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:25.664 -07 000000569 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 05:11:25.664 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:25.714 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:11:25.714 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:25.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:25.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:25.714 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:25.714 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:25.714 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:25.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:25.724 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:11:25.724 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:25.724 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:25.724 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:25.724 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:11:25.724 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:11:25.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:25.774 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:26.074 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:26.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:26.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:26.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2223271808, 0x0, 559484976) start.
17-03-18 05:11:26.114 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:26.114 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:26.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:11:26.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2223271808, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:11:26.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:26.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:26.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:11:26.214 -07 000000502 INF: Autofocus start
17-03-18 05:11:26.214 -07 000000502 INF: MeasureProfile start
17-03-18 05:11:26.214 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:26.214 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:26.224 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:26.224 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:26.224 -07 000000502 INF: MeasureProfile done
17-03-18 05:11:26.224 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:26.224 -07 000000502 INF: Autofocus finished
17-03-18 05:11:26.424 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:26.424 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:26.424 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176361754523716. ----------
17-03-18 05:11:26.424 -07 000000610 INF: Cycle	134	Tile	6	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:26.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37039, sync = True, waitForSettling = True)
17-03-18 05:11:26.434 -07 000000610 INF: Z Motor: Moving to -0.169554 mm, started at -0.176362 mm, distance = 6.81 um
17-03-18 05:11:26.434 -07 000000610 INF: FPGA: Xmit ZDACW 37039\n [Z Motor]
17-03-18 05:11:26.434 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:11:26.444 -07 000000610 INF: FPGA: 'ZDACW 37039' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:26.444 -07 000000625 INF: FPGA: Recv ZDACR 37039
17-03-18 05:11:26.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:26.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:11:26.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35686
17-03-18 05:11:26.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.624 -07 000000512 INF: FPGA: Recv ZSGSRD 35687
17-03-18 05:11:26.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.634 -07 000000461 INF: FPGA: Recv ZSGSRD 35684
17-03-18 05:11:26.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.644 -07 000000479 INF: FPGA: Recv ZSGSRD 35686
17-03-18 05:11:26.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.654 -07 000000382 INF: FPGA: Recv ZSGSRD 35685
17-03-18 05:11:26.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.664 -07 000000447 INF: FPGA: Recv ZSGSRD 35678
17-03-18 05:11:26.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35687
17-03-18 05:11:26.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35681
17-03-18 05:11:26.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:26.694 -07 000000474 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:11:26.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:26.704 -07 000000606 INF: FPGA: Recv ZPIEZORD 31437
17-03-18 05:11:26.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:26.714 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.4 V.
17-03-18 05:11:26.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35684 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35684 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35678 (-168.7 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:11:26.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35684, posNoise = 3, negNoise = 6
17-03-18 05:11:26.714 -07 000000610 INF: Z Motor: After move to -0.169554, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:26.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:11:26.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:26.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:26.714 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:26.714 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:26.714 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:26.714 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:26.714 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:26.714 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:26.714 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:11:26.714 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:26.714 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:11:26.714 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:26.724 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:26.724 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:26.724 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:26.724 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:26.734 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:11:26.734 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:11:26.734 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:11:26.734 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:11:26.744 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:26.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37216 150\n [Camera]
17-03-18 05:11:26.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:26.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:27.374 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:27.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:27.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:27.374 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:27.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:11:27.374 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:27.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:27.374 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:27.374 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:27.374 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:11:27.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37216 822
17-03-18 05:11:27.714 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:27.754 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.020806,
17-03-18 05:11:27.774 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:11:27.774 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:11:27.784 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:27.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:11:27.784 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:11:27.784 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:27.784 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:11:27.784 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:11:27.784 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:27.794 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:11:27.924 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:27.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:27.924 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:27.924 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:27.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:11:27.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:27.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:27.934 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:27.934 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:27.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:11:28.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:11:28.114 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:28.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37216 150' command took 2 ms to send, 1369 ms to get response, and 1377 ms overall
17-03-18 05:11:28.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:28.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169564938077733. ------
17-03-18 05:11:28.124 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:28.124 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17591 mm
17-03-18 05:11:28.124 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:28.124 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:28.124 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38427, sync = True, waitForSettling = False)
17-03-18 05:11:28.124 -07 000000479 INF: Z Motor: Moving to -0.175908 mm, started at -0.169565 mm, distance = -6.34 um
17-03-18 05:11:28.134 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:28.134 -07 000000479 INF: FPGA: Xmit ZDACW 38427\n [Z Motor]
17-03-18 05:11:28.134 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:11:28.134 -07 000000467 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:11:28.134 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:11:28.144 -07 000000479 INF: FPGA: 'ZDACW 38427' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:28.144 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:28.144 -07 000000512 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:11:28.154 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:28.154 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:28.154 -07 000000467 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:28.154 -07 000000467 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:28.154 -07 000000467 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:11:28.164 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:28.164 -07 000000618 INF: FPGA: Recv ZDACR 38427
17-03-18 05:11:28.174 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:11:28.174 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:28.174 -07 000000479 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:11:28.314 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:11:28.314 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:11:28.314 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:28.314 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:28.314 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:11:28.314 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:11:28.314 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:28.324 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:11:28.324 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:11:28.324 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:11:28.354 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:28.354 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:11:28.544 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:11:28.544 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:11:28.594 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:28.604 -07 000000625 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:11:28.604 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:11:28.604 -07 000000467 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:28.604 -07 000000467 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:11:28.604 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.836 mm, average velocity = 2.096 mm/sec
17-03-18 05:11:29.554 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:29.554 -07 000000479 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:11:29.564 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.564 -07 000000467 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:29.594 -07 000000467 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:29.594 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:29.594 -07 000000467 INF: Y Motor: Moved to 64.8779 after 1460 ms (table move)
17-03-18 05:11:29.594 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175908 mm (DAC = 38427)
17-03-18 05:11:29.594 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36666
17-03-18 05:11:29.604 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:29.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.604 -07 000000608 INF: FPGA: Recv ZSGSRD 36671
17-03-18 05:11:29.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.614 -07 000000467 INF: FPGA: Recv ZSGSRD 36677
17-03-18 05:11:29.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.624 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.624 -07 000000579 INF: FPGA: Recv ZSGSRD 36679
17-03-18 05:11:29.634 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.634 -07 000000608 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:11:29.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.644 -07 000000606 INF: FPGA: Recv ZSGSRD 36670
17-03-18 05:11:29.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.654 -07 000000474 INF: FPGA: Recv ZSGSRD 36666
17-03-18 05:11:29.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.664 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.664 -07 000000467 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:11:29.674 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.674 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.674 -07 000000461 INF: FPGA: Recv ZSGSRD 36674
17-03-18 05:11:29.684 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.684 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:29.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:11:29.694 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.694 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:29.694 -07 000000625 INF: FPGA: Recv ZPIEZORD 32768
17-03-18 05:11:29.704 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:29.704 -07 000000447 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.6 V.
17-03-18 05:11:29.704 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36672 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36673 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36666 (-175.0 uncal um), Max = 36679 (-175.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:11:29.704 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36672, posNoise = 7, negNoise = 6
17-03-18 05:11:29.704 -07 000000447 INF: Z Motor: After move to -0.175908, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:29.704 -07 000000447 INF: Z Motor: Settle wait time = 1466 ms, measure time = 104 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:11:29.704 -07 000000447 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:29.754 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:11:29.754 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:29.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:29.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:29.754 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:29.754 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:29.754 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:29.754 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:29.764 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:29.764 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:29.764 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:29.764 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:29.774 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:11:29.774 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:11:29.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:29.824 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:30.124 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:30.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:30.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:30.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-18 05:11:30.164 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:30.164 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:30.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 05:11:30.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:11:30.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:30.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:30.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:11:30.264 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:30.264 -07 000000608 INF: Autofocus start
17-03-18 05:11:30.264 -07 000000608 INF: MeasureProfile start
17-03-18 05:11:30.264 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:30.274 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:30.274 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:30.274 -07 000000608 INF: MeasureProfile done
17-03-18 05:11:30.274 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:30.274 -07 000000608 INF: Autofocus finished
17-03-18 05:11:30.474 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:30.474 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:30.484 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.175912059673793. ----------
17-03-18 05:11:30.484 -07 000000610 INF: Cycle	134	Tile	7	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:30.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36942, sync = True, waitForSettling = True)
17-03-18 05:11:30.484 -07 000000610 INF: Z Motor: Moving to -0.169110 mm, started at -0.175912 mm, distance = 6.80 um
17-03-18 05:11:30.484 -07 000000610 INF: FPGA: Xmit ZDACW 36942\n [Z Motor]
17-03-18 05:11:30.484 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:11:30.494 -07 000000610 INF: FPGA: 'ZDACW 36942' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:30.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:30.494 -07 000000606 INF: FPGA: Recv ZDACR 36942
17-03-18 05:11:30.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:30.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.654 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-18 05:11:30.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:30.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.664 -07 000000447 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:11:30.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.674 -07 000000461 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:11:30.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.684 -07 000000479 INF: FPGA: Recv ZSGSRD 35612
17-03-18 05:11:30.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.694 -07 000000455 INF: FPGA: Recv ZSGSRD 35612
17-03-18 05:11:30.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.704 -07 000000424 INF: FPGA: Recv ZSGSRD 35617
17-03-18 05:11:30.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.714 -07 000000382 INF: FPGA: Recv ZSGSRD 35615
17-03-18 05:11:30.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.724 -07 000000581 INF: FPGA: Recv ZSGSRD 35621
17-03-18 05:11:30.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.734 -07 000000579 INF: FPGA: Recv ZSGSRD 35621
17-03-18 05:11:30.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:30.744 -07 000000512 INF: FPGA: Recv ZSGSRD 35617
17-03-18 05:11:30.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:30.754 -07 000000626 INF: FPGA: Recv ZPIEZORD 31370
17-03-18 05:11:30.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:30.764 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.4 V.
17-03-18 05:11:30.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35615 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35621 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:11:30.764 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35615, posNoise = 6, negNoise = 10
17-03-18 05:11:30.764 -07 000000610 INF: Z Motor: After move to -0.169110, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:30.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:11:30.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:30.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:30.764 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:30.764 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:30.764 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:30.764 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:30.764 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:30.764 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:30.764 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:30.764 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:30.764 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:30.764 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:30.774 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:30.774 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:30.774 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:30.774 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:30.784 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:11:30.784 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:11:30.784 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:11:30.784 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:30.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37119 150\n [Camera]
17-03-18 05:11:30.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:31.414 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:31.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:31.424 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:31.424 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:31.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:11:31.424 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:31.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:31.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:31.424 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:31.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:11:31.614 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37119 819
17-03-18 05:11:31.744 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:31.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:31.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:11:31.794 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:11:31.794 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:31.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:11:31.794 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:11:31.794 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:31.804 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:31.804 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:31.804 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:11:31.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:11:31.974 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1180
17-03-18 05:11:31.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1180
17-03-18 05:11:31.974 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:31.974 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:31.974 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:11:31.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1180
17-03-18 05:11:31.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1180
17-03-18 05:11:31.974 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:31.974 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:31.974 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:11:32.164 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:32.164 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:32.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37119 150' command took 2 ms to send, 1372 ms to get response, and 1379 ms overall
17-03-18 05:11:32.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:32.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169121667439951. ------
17-03-18 05:11:32.164 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:32.164 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17579 mm
17-03-18 05:11:32.174 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:32.174 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:32.174 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38402, sync = True, waitForSettling = False)
17-03-18 05:11:32.174 -07 000000512 INF: Z Motor: Moving to -0.175793 mm, started at -0.169122 mm, distance = -6.67 um
17-03-18 05:11:32.174 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:11:32.174 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:11:32.184 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:32.184 -07 000000512 INF: FPGA: Xmit ZDACW 38402\n [Z Motor]
17-03-18 05:11:32.184 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:11:32.194 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:32.194 -07 000000512 INF: FPGA: 'ZDACW 38402' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:11:32.194 -07 000000382 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:11:32.204 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:32.204 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:11:32.204 -07 000000606 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:32.204 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:32.204 -07 000000606 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:11:32.214 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:32.214 -07 000000424 INF: FPGA: Recv ZDACR 38402
17-03-18 05:11:32.224 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:32.224 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:32.224 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:11:32.374 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:11:32.374 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:11:32.374 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:32.374 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:11:32.374 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:11:32.374 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:32.384 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:32.384 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:11:32.384 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:11:32.384 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:11:32.404 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:32.404 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:11:32.594 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:11:32.594 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:11:32.654 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:32.654 -07 000000501 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:11:32.664 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:32.664 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:32.664 -07 000000606 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:11:32.664 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 05:11:33.114 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.018051,
17-03-18 05:11:33.614 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:33.614 -07 000000579 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:11:33.624 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.624 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:33.664 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:33.664 -07 000000606 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:33.664 -07 000000606 INF: Y Motor: Moved to 65.7129 after 1486 ms (table move)
17-03-18 05:11:33.664 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175793 mm (DAC = 38402)
17-03-18 05:11:33.664 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.664 -07 000000479 INF: FPGA: Recv ZSGSRD 36656
17-03-18 05:11:33.674 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:33.674 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.674 -07 000000625 INF: FPGA: Recv ZSGSRD 36655
17-03-18 05:11:33.684 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.684 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.684 -07 000000467 INF: FPGA: Recv ZSGSRD 36647
17-03-18 05:11:33.694 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.694 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.694 -07 000000569 INF: FPGA: Recv ZSGSRD 36644
17-03-18 05:11:33.704 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.704 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.704 -07 000000502 INF: FPGA: Recv ZSGSRD 36658
17-03-18 05:11:33.714 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.714 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.714 -07 000000512 INF: FPGA: Recv ZSGSRD 36659
17-03-18 05:11:33.724 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.724 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.724 -07 000000581 INF: FPGA: Recv ZSGSRD 36656
17-03-18 05:11:33.734 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.734 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.734 -07 000000382 INF: FPGA: Recv ZSGSRD 36653
17-03-18 05:11:33.744 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.744 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.744 -07 000000447 INF: FPGA: Recv ZSGSRD 36658
17-03-18 05:11:33.754 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.754 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:33.754 -07 000000502 INF: FPGA: Recv ZSGSRD 36656
17-03-18 05:11:33.764 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.764 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:33.764 -07 000000474 INF: FPGA: Recv ZPIEZORD 32733
17-03-18 05:11:33.774 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:33.774 -07 000000480 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.860 V. Piezo Error = -8.7 V.
17-03-18 05:11:33.774 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36654 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36656 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36644 (-174.8 uncal um), Max = 36659 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:11:33.774 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36654, posNoise = 5, negNoise = 10
17-03-18 05:11:33.774 -07 000000480 INF: Z Motor: After move to -0.175793, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:33.774 -07 000000480 INF: Z Motor: Settle wait time = 1490 ms, measure time = 107 ms (allowed 150 ms), total time = 1597 ms
17-03-18 05:11:33.774 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:33.824 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1650 ms
17-03-18 05:11:33.824 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:33.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:33.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:33.824 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:33.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:33.824 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:33.824 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:33.824 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:33.824 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:33.834 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:33.834 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:33.844 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:11:33.844 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:11:33.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:33.894 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:11:34.194 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:11:34.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:11:34.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:34.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 05:11:34.224 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:34.224 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:34.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 05:11:34.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:11:34.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:34.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:34.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:11:34.324 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:34.324 -07 000000424 INF: Autofocus start
17-03-18 05:11:34.334 -07 000000424 INF: MeasureProfile start
17-03-18 05:11:34.334 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:34.334 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 7 ms to get response, and 13 ms overall
17-03-18 05:11:34.334 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:34.344 -07 000000424 INF: MeasureProfile done
17-03-18 05:11:34.344 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:11:34.344 -07 000000424 INF: Autofocus finished
17-03-18 05:11:34.544 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:34.544 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 05:11:34.544 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175796423855241. ----------
17-03-18 05:11:34.544 -07 000000610 INF: Cycle	134	Tile	8	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:34.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36898, sync = True, waitForSettling = True)
17-03-18 05:11:34.544 -07 000000610 INF: Z Motor: Moving to -0.168908 mm, started at -0.175796 mm, distance = 6.89 um
17-03-18 05:11:34.544 -07 000000610 INF: FPGA: Xmit ZDACW 36898\n [Z Motor]
17-03-18 05:11:34.554 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:11:34.554 -07 000000610 INF: FPGA: 'ZDACW 36898' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:11:34.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:34.554 -07 000000455 INF: FPGA: Recv ZDACR 36898
17-03-18 05:11:34.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:34.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.714 -07 000000581 INF: FPGA: Recv ZSGSRD 35578
17-03-18 05:11:34.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:34.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.724 -07 000000625 INF: FPGA: Recv ZSGSRD 35583
17-03-18 05:11:34.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35583
17-03-18 05:11:34.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.744 -07 000000480 INF: FPGA: Recv ZSGSRD 35579
17-03-18 05:11:34.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.754 -07 000000474 INF: FPGA: Recv ZSGSRD 35585
17-03-18 05:11:34.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.764 -07 000000569 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:11:34.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.774 -07 000000502 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:11:34.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:34.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.784 -07 000000501 INF: FPGA: Recv ZSGSRD 35581
17-03-18 05:11:34.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.794 -07 000000608 INF: FPGA: Recv ZSGSRD 35582
17-03-18 05:11:34.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:34.804 -07 000000625 INF: FPGA: Recv ZSGSRD 35587
17-03-18 05:11:34.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:34.814 -07 000000579 INF: FPGA: Recv ZPIEZORD 31339
17-03-18 05:11:34.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:34.824 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.4 V.
17-03-18 05:11:34.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35583 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35583 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35578 (-168.0 uncal um), Max = 35587 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:11:34.824 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35583, posNoise = 4, negNoise = 5
17-03-18 05:11:34.824 -07 000000610 INF: Z Motor: After move to -0.168908, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:34.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 05:11:34.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:34.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:34.824 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:34.824 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:34.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:34.824 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:34.824 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:34.824 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:34.824 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:34.824 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:34.824 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:11:34.824 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:34.834 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:34.834 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:34.834 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:34.834 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:34.834 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:11:34.834 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:34.844 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:11:34.844 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:11:34.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37075 150\n [Camera]
17-03-18 05:11:35.044 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:35.474 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:35.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:35.474 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:35.474 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:35.474 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:11:35.484 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:35.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:35.484 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:35.484 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:35.484 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:11:35.674 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37075 821
17-03-18 05:11:35.824 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:35.874 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:11:35.874 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:11:35.874 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:35.874 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:11:35.874 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:11:35.874 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:35.874 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:35.874 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:35.874 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:11:35.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:11:36.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:36.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:36.034 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:36.034 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:36.034 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:11:36.034 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:36.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:36.034 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:36.184 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:36.184 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:11:36.224 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:36.224 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:36.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37075 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-18 05:11:36.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:36.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168916092651415. ------
17-03-18 05:11:36.224 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:36.224 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17538 mm
17-03-18 05:11:36.224 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:36.234 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:11:36.234 -07 000000579 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:11:36.234 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:36.234 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:36.234 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:36.234 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38311, sync = True, waitForSettling = False)
17-03-18 05:11:36.234 -07 000000626 INF: Z Motor: Moving to -0.175377 mm, started at -0.168916 mm, distance = -6.46 um
17-03-18 05:11:36.234 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:11:36.244 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:36.244 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:36.244 -07 000000626 INF: FPGA: Xmit ZDACW 38311\n [Z Motor]
17-03-18 05:11:36.244 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:11:36.244 -07 000000579 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:36.244 -07 000000579 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:11:36.254 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:36.254 -07 000000626 INF: FPGA: 'ZDACW 38311' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:11:36.264 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:36.274 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:36.274 -07 000000608 INF: FPGA: Recv ZDACR 38311
17-03-18 05:11:36.284 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:36.284 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:11:36.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 412 ms.
17-03-18 05:11:36.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:11:36.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:36.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:11:36.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 05:11:36.454 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:36.454 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:11:36.574 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:11:36.574 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:11:36.574 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:36.574 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:36.584 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 548 ms.
17-03-18 05:11:36.634 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:11:36.634 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 05:11:36.684 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:36.694 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:11:36.694 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 05:11:36.694 -07 000000579 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:36.694 -07 000000579 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:11:36.694 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.840 mm, average velocity = 2.159 mm/sec
17-03-18 05:11:36.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:37.644 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:37.644 -07 000000447 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:11:37.654 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:37.654 -07 000000579 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:37.684 -07 000000579 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:37.684 -07 000000579 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:11:37.684 -07 000000579 INF: Y Motor: Moved to 66.5386 after 1455 ms (table move)
17-03-18 05:11:37.684 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175377 mm (DAC = 38311)
17-03-18 05:11:37.684 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.694 -07 000000581 INF: FPGA: Recv ZSGSRD 36594
17-03-18 05:11:37.694 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:11:37.694 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.694 -07 000000608 INF: FPGA: Recv ZSGSRD 36580
17-03-18 05:11:37.704 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:11:37.704 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.704 -07 000000626 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:11:37.714 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.714 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.714 -07 000000625 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:11:37.724 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.724 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.724 -07 000000467 INF: FPGA: Recv ZSGSRD 36592
17-03-18 05:11:37.734 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.734 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.734 -07 000000569 INF: FPGA: Recv ZSGSRD 36585
17-03-18 05:11:37.744 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.744 -07 000000461 INF: FPGA: Recv ZSGSRD 36592
17-03-18 05:11:37.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:11:37.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.764 -07 000000625 INF: FPGA: Recv ZSGSRD 36589
17-03-18 05:11:37.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:37.774 -07 000000467 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:11:37.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.784 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:37.784 -07 000000479 INF: FPGA: Recv ZPIEZORD 32695
17-03-18 05:11:37.794 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:37.794 -07 000000382 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.6 V.
17-03-18 05:11:37.794 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36589 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36591 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36580 (-174.4 uncal um), Max = 36594 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:11:37.794 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36589, posNoise = 5, negNoise = 9
17-03-18 05:11:37.794 -07 000000382 INF: Z Motor: After move to -0.175377, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:37.794 -07 000000382 INF: Z Motor: Settle wait time = 1457 ms, measure time = 101 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:11:37.794 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:37.844 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:11:37.844 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:37.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:37.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:37.844 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:37.844 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:37.844 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:37.844 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:37.844 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:37.844 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:37.854 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:37.854 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:37.874 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 18 ms.
17-03-18 05:11:37.874 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 22 ms.
17-03-18 05:11:37.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:37.914 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:38.214 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:38.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:38.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:38.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 05:11:38.254 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:38.254 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:38.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:11:38.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:11:38.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:38.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:38.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:11:38.454 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:38.454 -07 000000618 INF: Autofocus start
17-03-18 05:11:38.454 -07 000000618 INF: MeasureProfile start
17-03-18 05:11:38.454 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:38.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:38.464 -07 000000618 INF: MeasureProfile done
17-03-18 05:11:38.464 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:38.464 -07 000000618 INF: Autofocus finished
17-03-18 05:11:38.474 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:38.474 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.009895,
17-03-18 05:11:38.674 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:38.674 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:11:38.674 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175378850066027. ----------
17-03-18 05:11:38.674 -07 000000610 INF: Cycle	134	Tile	9	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:38.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36826, sync = True, waitForSettling = True)
17-03-18 05:11:38.684 -07 000000610 INF: Z Motor: Moving to -0.168579 mm, started at -0.175379 mm, distance = 6.80 um
17-03-18 05:11:38.684 -07 000000610 INF: FPGA: Xmit ZDACW 36826\n [Z Motor]
17-03-18 05:11:38.684 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:11:38.694 -07 000000610 INF: FPGA: 'ZDACW 36826' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:38.694 -07 000000474 INF: FPGA: Recv ZDACR 36826
17-03-18 05:11:38.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:38.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.854 -07 000000569 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:11:38.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:38.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.864 -07 000000479 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:11:38.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.874 -07 000000625 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:11:38.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:38.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.884 -07 000000447 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:11:38.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.894 -07 000000626 INF: FPGA: Recv ZSGSRD 35536
17-03-18 05:11:38.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.904 -07 000000581 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:11:38.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.914 -07 000000424 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:11:38.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.924 -07 000000501 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:11:38.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.934 -07 000000569 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:11:38.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:38.944 -07 000000467 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:11:38.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:38.954 -07 000000512 INF: FPGA: Recv ZPIEZORD 31274
17-03-18 05:11:38.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:38.964 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.4 V.
17-03-18 05:11:38.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35532 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35532 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35538 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:11:38.964 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35532, posNoise = 6, negNoise = 3
17-03-18 05:11:38.964 -07 000000610 INF: Z Motor: After move to -0.168579, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:38.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:11:38.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:38.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:38.964 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:38.964 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:38.964 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:38.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:38.964 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:38.964 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:38.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:38.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:38.964 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:38.964 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:38.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:38.964 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:38.964 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:38.974 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:38.974 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:11:38.974 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:38.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:11:38.984 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:11:38.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37002 150\n [Camera]
17-03-18 05:11:39.184 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:39.614 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:39.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:39.614 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:39.624 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:39.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:39.624 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:39.624 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:39.624 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:11:39.624 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:39.624 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 05:11:39.814 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37002 819
17-03-18 05:11:39.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:39.994 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:11:39.994 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:11:39.994 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:40.004 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:11:40.004 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:11:40.004 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:40.004 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:11:40.004 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:40.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:40.014 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:11:40.174 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:40.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:40.174 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:40.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:40.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:40.174 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:40.304 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:40.304 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:11:40.304 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:40.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:11:40.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:11:40.364 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:40.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37002 150' command took 2 ms to send, 1371 ms to get response, and 1377 ms overall
17-03-18 05:11:40.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:40.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168588457832185. ------
17-03-18 05:11:40.364 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:40.364 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17539 mm
17-03-18 05:11:40.364 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:40.364 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38314, sync = True, waitForSettling = False)
17-03-18 05:11:40.364 -07 000000626 INF: Z Motor: Moving to -0.175390 mm, started at -0.168588 mm, distance = -6.80 um
17-03-18 05:11:40.364 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:11:40.364 -07 000000618 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:11:40.374 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:40.374 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:40.374 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 05:11:40.374 -07 000000581 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:11:40.384 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:40.384 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:40.384 -07 000000618 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:40.384 -07 000000618 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:11:40.384 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:40.394 -07 000000626 INF: FPGA: Xmit ZDACW 38314\n [Z Motor]
17-03-18 05:11:40.394 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:11:40.404 -07 000000626 INF: FPGA: 'ZDACW 38314' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:11:40.404 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:40.414 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:40.414 -07 000000581 INF: FPGA: Recv ZDACR 38314
17-03-18 05:11:40.424 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:40.424 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:11:40.584 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:40.584 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 05:11:40.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:11:40.694 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:11:40.694 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:40.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:11:40.704 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:11:40.704 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:40.704 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:40.704 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:40.704 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 05:11:40.714 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 05:11:40.774 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:11:40.774 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:11:40.824 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:40.834 -07 000000581 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:11:40.834 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:11:40.834 -07 000000618 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:40.834 -07 000000618 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:11:40.834 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 05:11:41.744 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:41.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:41.784 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:41.784 -07 000000461 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:11:41.794 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.794 -07 000000618 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:41.824 -07 000000618 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:41.824 -07 000000618 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:41.824 -07 000000618 INF: Y Motor: Moved to 67.3711 after 1451 ms (table move)
17-03-18 05:11:41.824 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175390 mm (DAC = 38314)
17-03-18 05:11:41.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.824 -07 000000447 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:11:41.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:41.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.834 -07 000000501 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:11:41.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.844 -07 000000581 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:11:41.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.854 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.854 -07 000000479 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:11:41.864 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.864 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.864 -07 000000512 INF: FPGA: Recv ZSGSRD 36584
17-03-18 05:11:41.874 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.874 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.874 -07 000000455 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:11:41.884 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.884 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.884 -07 000000626 INF: FPGA: Recv ZSGSRD 36594
17-03-18 05:11:41.894 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.894 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.894 -07 000000382 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:11:41.904 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.904 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.904 -07 000000618 INF: FPGA: Recv ZSGSRD 36596
17-03-18 05:11:41.914 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.914 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:41.914 -07 000000625 INF: FPGA: Recv ZSGSRD 36599
17-03-18 05:11:41.924 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.924 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:41.924 -07 000000447 INF: FPGA: Recv ZPIEZORD 32709
17-03-18 05:11:41.934 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:41.934 -07 000000569 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.6 V.
17-03-18 05:11:41.934 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36593 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36592 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36584 (-174.5 uncal um), Max = 36599 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:11:41.934 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36593, posNoise = 6, negNoise = 9
17-03-18 05:11:41.934 -07 000000569 INF: Z Motor: After move to -0.175390, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:41.934 -07 000000569 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:11:41.934 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:41.984 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:11:41.984 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:41.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:41.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:41.984 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:41.984 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:41.984 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:41.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:41.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:41.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:41.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:41.994 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:42.004 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:11:42.004 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:11:42.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:42.044 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:42.344 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:42.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:42.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:42.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-18 05:11:42.384 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:42.384 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:42.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:11:42.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:11:42.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:42.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:42.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:11:42.484 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:42.484 -07 000000569 INF: Autofocus start
17-03-18 05:11:42.484 -07 000000569 INF: MeasureProfile start
17-03-18 05:11:42.484 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:42.494 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:42.494 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:42.494 -07 000000569 INF: MeasureProfile done
17-03-18 05:11:42.494 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:11:42.494 -07 000000569 INF: Autofocus finished
17-03-18 05:11:42.694 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:42.694 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:42.694 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175404546914594. ----------
17-03-18 05:11:42.694 -07 000000610 INF: Cycle	134	Tile	10	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:42.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36811, sync = True, waitForSettling = True)
17-03-18 05:11:42.704 -07 000000610 INF: Z Motor: Moving to -0.168510 mm, started at -0.175405 mm, distance = 6.89 um
17-03-18 05:11:42.704 -07 000000610 INF: FPGA: Xmit ZDACW 36811\n [Z Motor]
17-03-18 05:11:42.704 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:11:42.714 -07 000000610 INF: FPGA: 'ZDACW 36811' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:42.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:42.714 -07 000000606 INF: FPGA: Recv ZDACR 36811
17-03-18 05:11:42.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:42.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.874 -07 000000382 INF: FPGA: Recv ZSGSRD 35524
17-03-18 05:11:42.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:42.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.884 -07 000000479 INF: FPGA: Recv ZSGSRD 35523
17-03-18 05:11:42.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.894 -07 000000581 INF: FPGA: Recv ZSGSRD 35522
17-03-18 05:11:42.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.904 -07 000000455 INF: FPGA: Recv ZSGSRD 35516
17-03-18 05:11:42.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.914 -07 000000606 INF: FPGA: Recv ZSGSRD 35519
17-03-18 05:11:42.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.924 -07 000000618 INF: FPGA: Recv ZSGSRD 35524
17-03-18 05:11:42.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.934 -07 000000479 INF: FPGA: Recv ZSGSRD 35525
17-03-18 05:11:42.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.944 -07 000000581 INF: FPGA: Recv ZSGSRD 35522
17-03-18 05:11:42.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.954 -07 000000512 INF: FPGA: Recv ZSGSRD 35518
17-03-18 05:11:42.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:42.964 -07 000000569 INF: FPGA: Recv ZSGSRD 35524
17-03-18 05:11:42.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:42.974 -07 000000474 INF: FPGA: Recv ZPIEZORD 31268
17-03-18 05:11:42.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:42.984 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.4 V.
17-03-18 05:11:42.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35522 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35516 (-167.6 uncal um), Max = 35525 (-167.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:11:42.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35522, posNoise = 3, negNoise = 6
17-03-18 05:11:42.984 -07 000000610 INF: Z Motor: After move to -0.168510, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:42.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:11:42.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:42.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:42.984 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:42.984 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:42.984 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:42.984 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:42.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:42.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:42.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:42.984 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:42.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:42.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:42.994 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:42.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:42.994 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:42.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:42.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:11:42.994 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:11:43.004 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:11:43.004 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:11:43.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36988 150\n [Camera]
17-03-18 05:11:43.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:43.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:43.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:43.634 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:43.644 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:43.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:43.644 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:43.644 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:43.644 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:11:43.644 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:43.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:11:43.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36988 819
17-03-18 05:11:43.844 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.005817,
17-03-18 05:11:43.974 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:44.014 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:11:44.014 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:11:44.014 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:44.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:11:44.024 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:11:44.024 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:44.024 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:44.024 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:11:44.024 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:44.034 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:11:44.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:44.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:44.194 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:44.194 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:44.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:11:44.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:44.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:44.194 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:44.194 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:44.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:11:44.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:44.384 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:44.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36988 150' command took 2 ms to send, 1371 ms to get response, and 1377 ms overall
17-03-18 05:11:44.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:44.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168524215710768. ------
17-03-18 05:11:44.384 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:44.384 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17481 mm
17-03-18 05:11:44.384 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:44.394 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:11:44.394 -07 000000606 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:11:44.394 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:44.394 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38186, sync = True, waitForSettling = False)
17-03-18 05:11:44.394 -07 000000625 INF: Z Motor: Moving to -0.174804 mm, started at -0.168524 mm, distance = -6.28 um
17-03-18 05:11:44.394 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:44.394 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 05:11:44.394 -07 000000474 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:11:44.404 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:44.404 -07 000000606 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:44.404 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:44.404 -07 000000606 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:44.404 -07 000000606 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:11:44.414 -07 000000625 INF: FPGA: Xmit ZDACW 38186\n [Z Motor]
17-03-18 05:11:44.414 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:11:44.424 -07 000000625 INF: FPGA: 'ZDACW 38186' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:11:44.424 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:44.434 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:44.434 -07 000000608 INF: FPGA: Recv ZDACR 38186
17-03-18 05:11:44.444 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:44.444 -07 000000625 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:11:44.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:11:44.584 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:11:44.584 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:44.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:11:44.584 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:11:44.584 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:44.584 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:44.584 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:11:44.584 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:11:44.594 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:11:44.604 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:44.604 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 05:11:44.794 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:11:44.794 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:11:44.844 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:44.854 -07 000000569 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:11:44.854 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:44.854 -07 000000606 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:44.854 -07 000000606 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:11:44.854 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.842 mm, average velocity = 2.136 mm/sec
17-03-18 05:11:45.804 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:45.804 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:11:45.814 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:45.814 -07 000000606 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:45.844 -07 000000606 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:45.844 -07 000000606 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:11:45.844 -07 000000606 INF: Y Motor: Moved to 68.2046 after 1449 ms (table move)
17-03-18 05:11:45.844 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174804 mm (DAC = 38186)
17-03-18 05:11:45.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.844 -07 000000479 INF: FPGA: Recv ZSGSRD 36502
17-03-18 05:11:45.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:45.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.854 -07 000000581 INF: FPGA: Recv ZSGSRD 36499
17-03-18 05:11:45.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.864 -07 000000480 INF: FPGA: Recv ZSGSRD 36502
17-03-18 05:11:45.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.874 -07 000000608 INF: FPGA: Recv ZSGSRD 36497
17-03-18 05:11:45.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.884 -07 000000382 INF: FPGA: Recv ZSGSRD 36497
17-03-18 05:11:45.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.894 -07 000000479 INF: FPGA: Recv ZSGSRD 36498
17-03-18 05:11:45.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.904 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.904 -07 000000626 INF: FPGA: Recv ZSGSRD 36500
17-03-18 05:11:45.914 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.914 -07 000000606 INF: FPGA: Recv ZSGSRD 36507
17-03-18 05:11:45.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.924 -07 000000608 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:11:45.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.934 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:45.934 -07 000000382 INF: FPGA: Recv ZSGSRD 36502
17-03-18 05:11:45.944 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.944 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:45.944 -07 000000455 INF: FPGA: Recv ZPIEZORD 32575
17-03-18 05:11:45.954 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:45.954 -07 000000467 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.7 V.
17-03-18 05:11:45.954 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36501 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36501 (-173.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36497 (-173.9 uncal um), Max = 36507 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:11:45.954 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36501, posNoise = 6, negNoise = 4
17-03-18 05:11:45.954 -07 000000467 INF: Z Motor: After move to -0.174804, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:45.954 -07 000000467 INF: Z Motor: Settle wait time = 1452 ms, measure time = 106 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:11:45.954 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:46.004 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:11:46.004 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:46.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:46.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:46.004 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:46.004 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:46.004 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:46.004 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:46.004 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:46.004 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:46.004 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:46.004 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:46.024 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:11:46.024 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:11:46.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:46.074 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:46.374 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:46.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:46.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:46.484 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:46.484 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:46.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 457 ms to get response, and 461 ms overall
17-03-18 05:11:46.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 05:11:46.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:11:46.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:46.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:46.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-18 05:11:46.684 -07 000000581 INF: Autofocus start
17-03-18 05:11:46.684 -07 000000581 INF: MeasureProfile start
17-03-18 05:11:46.684 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:46.684 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:46.694 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:46.694 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:46.694 -07 000000581 INF: MeasureProfile done
17-03-18 05:11:46.694 -07 000000581 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:11:46.694 -07 000000581 INF: Autofocus finished
17-03-18 05:11:46.744 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:46.894 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:46.894 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:11:46.904 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174813519397552. ----------
17-03-18 05:11:46.904 -07 000000610 INF: Cycle	134	Tile	11	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:46.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36737, sync = True, waitForSettling = True)
17-03-18 05:11:46.904 -07 000000610 INF: Z Motor: Moving to -0.168171 mm, started at -0.174814 mm, distance = 6.64 um
17-03-18 05:11:46.904 -07 000000610 INF: FPGA: Xmit ZDACW 36737\n [Z Motor]
17-03-18 05:11:46.904 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:11:46.914 -07 000000610 INF: FPGA: 'ZDACW 36737' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:46.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:46.914 -07 000000626 INF: FPGA: Recv ZDACR 36737
17-03-18 05:11:46.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:46.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35468
17-03-18 05:11:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.084 -07 000000447 INF: FPGA: Recv ZSGSRD 35471
17-03-18 05:11:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.094 -07 000000625 INF: FPGA: Recv ZSGSRD 35463
17-03-18 05:11:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.104 -07 000000581 INF: FPGA: Recv ZSGSRD 35462
17-03-18 05:11:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35475
17-03-18 05:11:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35471
17-03-18 05:11:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.134 -07 000000474 INF: FPGA: Recv ZSGSRD 35470
17-03-18 05:11:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.144 -07 000000625 INF: FPGA: Recv ZSGSRD 35475
17-03-18 05:11:47.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.154 -07 000000479 INF: FPGA: Recv ZSGSRD 35465
17-03-18 05:11:47.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:47.164 -07 000000569 INF: FPGA: Recv ZSGSRD 35472
17-03-18 05:11:47.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:47.174 -07 000000579 INF: FPGA: Recv ZPIEZORD 31187
17-03-18 05:11:47.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:47.184 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.4 V.
17-03-18 05:11:47.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35469 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35470 (-167.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35462 (-167.3 uncal um), Max = 35475 (-167.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:11:47.184 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35469, posNoise = 6, negNoise = 7
17-03-18 05:11:47.184 -07 000000610 INF: Z Motor: After move to -0.168171, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:47.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:11:47.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:47.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:47.184 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:47.184 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:47.184 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:47.184 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:47.184 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:47.184 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:47.184 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:47.184 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:47.184 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:47.184 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:47.194 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:11:47.194 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:47.194 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:11:47.194 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:47.204 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:11:47.204 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:11:47.204 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:11:47.204 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:11:47.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36913 150\n [Camera]
17-03-18 05:11:47.404 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:47.844 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:47.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:47.844 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:47.844 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:47.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:47.844 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:47.844 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:47.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 05:11:47.854 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:47.854 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:11:48.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36913 819
17-03-18 05:11:48.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:48.224 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:11:48.224 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:11:48.224 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:48.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:11:48.224 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:11:48.224 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:48.234 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:48.234 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:11:48.234 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:48.234 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:11:48.394 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1181
17-03-18 05:11:48.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1181
17-03-18 05:11:48.394 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:48.394 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1181
17-03-18 05:11:48.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1181
17-03-18 05:11:48.404 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:48.524 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:48.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:11:48.524 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:48.524 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:11:48.584 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:11:48.584 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:48.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36913 150' command took 2 ms to send, 1365 ms to get response, and 1377 ms overall
17-03-18 05:11:48.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:48.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168183732467254. ------
17-03-18 05:11:48.594 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:48.594 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17482 mm
17-03-18 05:11:48.594 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:48.594 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:11:48.594 -07 000000479 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:11:48.594 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38189, sync = True, waitForSettling = False)
17-03-18 05:11:48.594 -07 000000480 INF: Z Motor: Moving to -0.174818 mm, started at -0.168184 mm, distance = -6.63 um
17-03-18 05:11:48.594 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:48.604 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:48.604 -07 000000480 INF: FPGA: Xmit ZDACW 38189\n [Z Motor]
17-03-18 05:11:48.604 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:11:48.614 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:48.614 -07 000000480 INF: FPGA: 'ZDACW 38189' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:11:48.614 -07 000000474 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:11:48.624 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:48.624 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:11:48.624 -07 000000479 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:48.624 -07 000000479 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:48.624 -07 000000479 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:11:48.634 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:48.634 -07 000000474 INF: FPGA: Recv ZDACR 38189
17-03-18 05:11:48.644 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:48.644 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:11:48.644 -07 000000480 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:11:48.824 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:48.824 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:11:48.904 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:11:48.904 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:11:48.904 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:48.914 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:48.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:11:48.914 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:11:48.914 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:48.914 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:48.914 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 05:11:48.914 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 05:11:49.014 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:11:49.014 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:11:49.064 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:49.074 -07 000000512 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:11:49.074 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:49.074 -07 000000479 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:49.074 -07 000000479 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:11:49.074 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 05:11:49.204 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.003063,
17-03-18 05:11:50.024 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:50.024 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:11:50.034 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:50.034 -07 000000479 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:50.064 -07 000000479 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:50.064 -07 000000479 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:50.064 -07 000000479 INF: Y Motor: Moved to 69.0264 after 1467 ms (table move)
17-03-18 05:11:50.064 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174818 mm (DAC = 38189)
17-03-18 05:11:50.064 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36507
17-03-18 05:11:50.074 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:50.074 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.074 -07 000000455 INF: FPGA: Recv ZSGSRD 36502
17-03-18 05:11:50.084 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.084 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.084 -07 000000581 INF: FPGA: Recv ZSGSRD 36501
17-03-18 05:11:50.094 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.094 -07 000000626 INF: FPGA: Recv ZSGSRD 36508
17-03-18 05:11:50.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.104 -07 000000512 INF: FPGA: Recv ZSGSRD 36500
17-03-18 05:11:50.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.114 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.114 -07 000000606 INF: FPGA: Recv ZSGSRD 36506
17-03-18 05:11:50.124 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.124 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.124 -07 000000455 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:11:50.134 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.134 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.134 -07 000000581 INF: FPGA: Recv ZSGSRD 36503
17-03-18 05:11:50.144 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.144 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36500
17-03-18 05:11:50.154 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.154 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:50.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36513
17-03-18 05:11:50.164 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.164 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:50.164 -07 000000424 INF: FPGA: Recv ZPIEZORD 32611
17-03-18 05:11:50.174 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:50.174 -07 000000467 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.6 V.
17-03-18 05:11:50.174 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36504 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36504 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36513 (-174.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:11:50.174 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36504, posNoise = 9, negNoise = 4
17-03-18 05:11:50.174 -07 000000467 INF: Z Motor: After move to -0.174818, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:50.174 -07 000000467 INF: Z Motor: Settle wait time = 1472 ms, measure time = 104 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:11:50.174 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:50.224 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:11:50.224 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:50.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:50.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:50.224 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:50.224 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:50.234 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:50.234 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:50.234 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:11:50.234 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:50.234 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:50.234 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:50.244 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:11:50.244 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:11:50.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:50.284 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:50.584 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:50.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:50.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:50.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 05:11:50.624 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:50.624 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:50.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:11:50.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:11:50.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:50.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:50.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:11:50.824 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:50.824 -07 000000455 INF: Autofocus start
17-03-18 05:11:50.824 -07 000000455 INF: MeasureProfile start
17-03-18 05:11:50.824 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:50.834 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:11:50.834 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:50.834 -07 000000455 INF: MeasureProfile done
17-03-18 05:11:50.834 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:11:50.834 -07 000000455 INF: Autofocus finished
17-03-18 05:11:51.034 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:51.034 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:51.034 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174832792033977. ----------
17-03-18 05:11:51.034 -07 000000610 INF: Cycle	134	Tile	12	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:51.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36686, sync = True, waitForSettling = True)
17-03-18 05:11:51.044 -07 000000610 INF: Z Motor: Moving to -0.167938 mm, started at -0.174833 mm, distance = 6.90 um
17-03-18 05:11:51.044 -07 000000610 INF: FPGA: Xmit ZDACW 36686\n [Z Motor]
17-03-18 05:11:51.044 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:11:51.054 -07 000000610 INF: FPGA: 'ZDACW 36686' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:11:51.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:51.054 -07 000000618 INF: FPGA: Recv ZDACR 36686
17-03-18 05:11:51.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:51.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35437
17-03-18 05:11:51.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:51.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.224 -07 000000479 INF: FPGA: Recv ZSGSRD 35435
17-03-18 05:11:51.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.234 -07 000000455 INF: FPGA: Recv ZSGSRD 35435
17-03-18 05:11:51.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.244 -07 000000461 INF: FPGA: Recv ZSGSRD 35431
17-03-18 05:11:51.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.254 -07 000000579 INF: FPGA: Recv ZSGSRD 35430
17-03-18 05:11:51.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.264 -07 000000606 INF: FPGA: Recv ZSGSRD 35438
17-03-18 05:11:51.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.274 -07 000000569 INF: FPGA: Recv ZSGSRD 35433
17-03-18 05:11:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.284 -07 000000382 INF: FPGA: Recv ZSGSRD 35432
17-03-18 05:11:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35433
17-03-18 05:11:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:51.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35436
17-03-18 05:11:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:51.314 -07 000000501 INF: FPGA: Recv ZPIEZORD 31167
17-03-18 05:11:51.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:51.324 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.4 V.
17-03-18 05:11:51.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35434 (-167.1 uncal um), Error = 0.8 uncal um, Median = 35434 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35430 (-167.1 uncal um), Max = 35438 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:11:51.324 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35434, posNoise = 4, negNoise = 4
17-03-18 05:11:51.324 -07 000000610 INF: Z Motor: After move to -0.167938, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:51.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:11:51.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:51.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:51.324 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:51.324 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:51.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:51.324 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:51.324 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:51.324 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:51.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:51.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:51.324 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:51.324 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:51.334 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:51.334 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:51.334 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:51.334 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:51.344 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:11:51.344 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:11:51.344 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:11:51.344 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:11:51.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36863 150\n [Camera]
17-03-18 05:11:51.544 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:51.744 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:51.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:51.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:51.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:51.974 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:51.984 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:51.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:51.984 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:51.984 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:11:51.984 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:51.984 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:51.984 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 05:11:52.174 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36863 819
17-03-18 05:11:52.324 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:52.384 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:11:52.384 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:11:52.384 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:52.384 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:52.384 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:11:52.384 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:11:52.384 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:11:52.384 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:52.394 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:11:52.394 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:11:52.534 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:52.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:52.534 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:52.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:52.534 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:11:52.534 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:52.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:52.534 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:52.534 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:52.534 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:11:52.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:52.724 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:52.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36863 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-18 05:11:52.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:52.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167958885042293. ------
17-03-18 05:11:52.724 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:52.724 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17434 mm
17-03-18 05:11:52.724 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:52.734 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:52.734 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:52.734 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:52.734 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:11:52.734 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:11:52.734 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38084, sync = True, waitForSettling = False)
17-03-18 05:11:52.734 -07 000000447 INF: Z Motor: Moving to -0.174337 mm, started at -0.167959 mm, distance = -6.38 um
17-03-18 05:11:52.744 -07 000000447 INF: FPGA: Xmit ZDACW 38084\n [Z Motor]
17-03-18 05:11:52.744 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:11:52.754 -07 000000447 INF: FPGA: 'ZDACW 38084' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:11:52.754 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:52.754 -07 000000461 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:11:52.764 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:52.764 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:11:52.764 -07 000000626 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:52.764 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:52.764 -07 000000626 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:11:52.764 -07 000000501 INF: FPGA: Recv ZDACR 38084
17-03-18 05:11:52.774 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:52.774 -07 000000447 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:11:52.774 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:52.934 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:52.934 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:52.934 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:11:52.934 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:11:52.934 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:52.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:11:52.934 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:11:52.934 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:52.944 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:52.944 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:11:52.944 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:11:52.944 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:11:53.154 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:11:53.154 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 390 ms overall
17-03-18 05:11:53.194 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:53.204 -07 000000461 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:11:53.204 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:11:53.204 -07 000000626 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:53.204 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:11:53.204 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.846 mm, average velocity = 2.170 mm/sec
17-03-18 05:11:54.154 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:54.154 -07 000000424 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:11:54.164 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:54.164 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:54.194 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:54.194 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:11:54.194 -07 000000626 INF: Y Motor: Moved to 69.8628 after 1460 ms (table move)
17-03-18 05:11:54.194 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174337 mm (DAC = 38084)
17-03-18 05:11:54.194 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.194 -07 000000618 INF: FPGA: Recv ZSGSRD 36434
17-03-18 05:11:54.204 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:11:54.204 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.204 -07 000000480 INF: FPGA: Recv ZSGSRD 36426
17-03-18 05:11:54.214 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.214 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.214 -07 000000461 INF: FPGA: Recv ZSGSRD 36424
17-03-18 05:11:54.224 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.224 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.224 -07 000000474 INF: FPGA: Recv ZSGSRD 36421
17-03-18 05:11:54.234 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.234 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.234 -07 000000581 INF: FPGA: Recv ZSGSRD 36426
17-03-18 05:11:54.244 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.254 -07 000000424 INF: FPGA: Recv ZSGSRD 36431
17-03-18 05:11:54.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:54.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.264 -07 000000479 INF: FPGA: Recv ZSGSRD 36421
17-03-18 05:11:54.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36423
17-03-18 05:11:54.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.284 -07 000000569 INF: FPGA: Recv ZSGSRD 36423
17-03-18 05:11:54.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:54.294 -07 000000480 INF: FPGA: Recv ZSGSRD 36426
17-03-18 05:11:54.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.304 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:54.304 -07 000000424 INF: FPGA: Recv ZPIEZORD 32496
17-03-18 05:11:54.314 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:54.314 -07 000000467 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.7 V.
17-03-18 05:11:54.314 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36426 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36425 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36421 (-173.4 uncal um), Max = 36434 (-173.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:11:54.314 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36426, posNoise = 8, negNoise = 5
17-03-18 05:11:54.314 -07 000000467 INF: Z Motor: After move to -0.174337, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:54.314 -07 000000467 INF: Z Motor: Settle wait time = 1463 ms, measure time = 114 ms (allowed 150 ms), total time = 1577 ms
17-03-18 05:11:54.314 -07 000000467 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:54.354 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:11:54.354 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:54.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:54.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:54.354 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:54.354 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:54.354 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:54.354 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:54.364 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:54.364 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:54.364 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:54.364 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:54.374 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:11:54.374 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:11:54.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:54.424 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:54.564 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.99219,
17-03-18 05:11:54.724 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:54.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:54.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:54.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 05:11:54.764 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:54.764 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:54.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 05:11:54.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:11:54.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:54.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:11:54.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:11:54.864 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:54.864 -07 000000606 INF: Autofocus start
17-03-18 05:11:54.864 -07 000000606 INF: MeasureProfile start
17-03-18 05:11:54.864 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:54.874 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:54.874 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:54.874 -07 000000606 INF: MeasureProfile done
17-03-18 05:11:54.874 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:11:54.874 -07 000000606 INF: Autofocus finished
17-03-18 05:11:55.074 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:55.074 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:11:55.084 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.17433170348692. ----------
17-03-18 05:11:55.084 -07 000000610 INF: Cycle	134	Tile	13	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:55.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36599, sync = True, waitForSettling = True)
17-03-18 05:11:55.084 -07 000000610 INF: Z Motor: Moving to -0.167539 mm, started at -0.174332 mm, distance = 6.79 um
17-03-18 05:11:55.084 -07 000000610 INF: FPGA: Xmit ZDACW 36599\n [Z Motor]
17-03-18 05:11:55.084 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:11:55.094 -07 000000610 INF: FPGA: 'ZDACW 36599' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:55.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:55.094 -07 000000626 INF: FPGA: Recv ZDACR 36599
17-03-18 05:11:55.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:55.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.254 -07 000000579 INF: FPGA: Recv ZSGSRD 35367
17-03-18 05:11:55.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:55.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35371
17-03-18 05:11:55.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.274 -07 000000512 INF: FPGA: Recv ZSGSRD 35364
17-03-18 05:11:55.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:55.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.284 -07 000000618 INF: FPGA: Recv ZSGSRD 35367
17-03-18 05:11:55.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.294 -07 000000424 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:11:55.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.304 -07 000000447 INF: FPGA: Recv ZSGSRD 35366
17-03-18 05:11:55.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.314 -07 000000479 INF: FPGA: Recv ZSGSRD 35369
17-03-18 05:11:55.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35374
17-03-18 05:11:55.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.334 -07 000000579 INF: FPGA: Recv ZSGSRD 35363
17-03-18 05:11:55.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:55.344 -07 000000474 INF: FPGA: Recv ZSGSRD 35375
17-03-18 05:11:55.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:55.354 -07 000000625 INF: FPGA: Recv ZPIEZORD 31087
17-03-18 05:11:55.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:55.364 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.4 V.
17-03-18 05:11:55.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35368 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35367 (-166.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35360 (-166.6 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:11:55.364 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35368, posNoise = 7, negNoise = 8
17-03-18 05:11:55.364 -07 000000610 INF: Z Motor: After move to -0.167539, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:55.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:11:55.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:55.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:55.364 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:55.364 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:55.364 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:55.364 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:11:55.364 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:55.364 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:55.364 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:55.364 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:55.364 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:11:55.364 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:55.374 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:55.374 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:55.374 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:11:55.374 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:55.374 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:11:55.374 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:11:55.384 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:11:55.384 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:11:55.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36776 150\n [Camera]
17-03-18 05:11:55.584 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:56.014 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:11:56.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:11:56.024 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:56.024 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:56.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:11:56.024 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:11:56.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:11:56.024 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:56.024 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:56.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:11:56.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36776 819
17-03-18 05:11:56.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:11:56.394 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:11:56.394 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:11:56.394 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:56.394 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:11:56.394 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:11:56.394 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:56.404 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:56.404 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:56.404 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:11:56.414 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:11:56.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:11:56.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:11:56.574 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:11:56.574 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:11:56.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:11:56.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:11:56.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:11:56.574 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:11:56.574 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:11:56.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:11:56.744 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:11:56.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:11:56.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:11:56.764 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:11:56.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36776 150' command took 2 ms to send, 1373 ms to get response, and 1377 ms overall
17-03-18 05:11:56.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:11:56.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167534887040937. ------
17-03-18 05:11:56.764 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:56.764 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17397 mm
17-03-18 05:11:56.764 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:11:56.774 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:56.774 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:11:56.774 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:11:56.774 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:11:56.774 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38004, sync = True, waitForSettling = False)
17-03-18 05:11:56.774 -07 000000501 INF: Z Motor: Moving to -0.173971 mm, started at -0.167535 mm, distance = -6.44 um
17-03-18 05:11:56.774 -07 000000479 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:11:56.784 -07 000000501 INF: FPGA: Xmit ZDACW 38004\n [Z Motor]
17-03-18 05:11:56.784 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:11:56.794 -07 000000501 INF: FPGA: 'ZDACW 38004' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:11:56.794 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:56.794 -07 000000625 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:11:56.804 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:11:56.804 -07 000000479 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:56.804 -07 000000479 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:11:56.804 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:11:56.804 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:56.804 -07 000000569 INF: FPGA: Recv ZDACR 38004
17-03-18 05:11:56.814 -07 000000501 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:56.814 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:11:56.814 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:11:56.974 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:11:56.974 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:11:56.974 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:56.974 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:11:56.974 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:11:56.974 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:11:56.974 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:11:56.974 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:56.984 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:11:56.984 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:11:56.984 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:11:56.984 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:11:57.194 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:11:57.194 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 05:11:57.234 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:57.244 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:11:57.254 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:57.254 -07 000000479 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:57.254 -07 000000479 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:11:57.254 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.840 mm, average velocity = 2.159 mm/sec
17-03-18 05:11:58.204 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:11:58.204 -07 000000606 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:11:58.214 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:11:58.214 -07 000000479 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:11:58.244 -07 000000479 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:11:58.244 -07 000000479 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:11:58.244 -07 000000479 INF: Y Motor: Moved to 70.6880 after 1469 ms (table move)
17-03-18 05:11:58.244 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173971 mm (DAC = 38004)
17-03-18 05:11:58.244 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.244 -07 000000512 INF: FPGA: Recv ZSGSRD 36368
17-03-18 05:11:58.254 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:58.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.254 -07 000000606 INF: FPGA: Recv ZSGSRD 36361
17-03-18 05:11:58.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:11:58.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.274 -07 000000447 INF: FPGA: Recv ZSGSRD 36374
17-03-18 05:11:58.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:11:58.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.284 -07 000000569 INF: FPGA: Recv ZSGSRD 36374
17-03-18 05:11:58.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.294 -07 000000474 INF: FPGA: Recv ZSGSRD 36376
17-03-18 05:11:58.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.304 -07 000000512 INF: FPGA: Recv ZSGSRD 36366
17-03-18 05:11:58.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.314 -07 000000501 INF: FPGA: Recv ZSGSRD 36368
17-03-18 05:11:58.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.324 -07 000000626 INF: FPGA: Recv ZSGSRD 36364
17-03-18 05:11:58.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:58.334 -07 000000579 INF: FPGA: Recv ZSGSRD 36370
17-03-18 05:11:58.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.344 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:58.344 -07 000000625 INF: FPGA: Recv ZPIEZORD 32413
17-03-18 05:11:58.354 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:58.354 -07 000000467 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.7 V.
17-03-18 05:11:58.354 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36369 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36369 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36361 (-173.0 uncal um), Max = 36376 (-173.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:11:58.354 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36369, posNoise = 7, negNoise = 8
17-03-18 05:11:58.354 -07 000000467 INF: Z Motor: After move to -0.173971, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:58.354 -07 000000467 INF: Z Motor: Settle wait time = 1472 ms, measure time = 106 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:11:58.354 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:11:58.404 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 05:11:58.404 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:11:58.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:58.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:58.404 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:58.404 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:58.404 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:11:58.404 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:58.404 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:11:58.404 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:11:58.414 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:11:58.414 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:11:58.424 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:11:58.424 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:11:58.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:11:58.474 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:11:58.774 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:11:58.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:11:58.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:11:58.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-18 05:11:58.804 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:11:58.814 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:11:58.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:11:58.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:11:58.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:11:58.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:11:58.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:11:58.914 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:11:58.914 -07 000000461 INF: Autofocus start
17-03-18 05:11:58.914 -07 000000461 INF: MeasureProfile start
17-03-18 05:11:58.914 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:11:58.924 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:11:58.924 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:11:58.924 -07 000000461 INF: MeasureProfile done
17-03-18 05:11:58.924 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:11:58.924 -07 000000461 INF: Autofocus finished
17-03-18 05:11:59.124 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:11:59.124 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:11:59.124 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173965523394839. ----------
17-03-18 05:11:59.124 -07 000000610 INF: Cycle	134	Tile	14	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:11:59.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36501, sync = True, waitForSettling = True)
17-03-18 05:11:59.134 -07 000000610 INF: Z Motor: Moving to -0.167091 mm, started at -0.173966 mm, distance = 6.87 um
17-03-18 05:11:59.134 -07 000000610 INF: FPGA: Xmit ZDACW 36501\n [Z Motor]
17-03-18 05:11:59.134 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:11:59.144 -07 000000610 INF: FPGA: 'ZDACW 36501' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:11:59.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:11:59.144 -07 000000579 INF: FPGA: Recv ZDACR 36501
17-03-18 05:11:59.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:11:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35301
17-03-18 05:11:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.314 -07 000000455 INF: FPGA: Recv ZSGSRD 35300
17-03-18 05:11:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.324 -07 000000424 INF: FPGA: Recv ZSGSRD 35299
17-03-18 05:11:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.334 -07 000000618 INF: FPGA: Recv ZSGSRD 35303
17-03-18 05:11:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.344 -07 000000579 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:11:59.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35300
17-03-18 05:11:59.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.364 -07 000000480 INF: FPGA: Recv ZSGSRD 35305
17-03-18 05:11:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.374 -07 000000569 INF: FPGA: Recv ZSGSRD 35301
17-03-18 05:11:59.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.384 -07 000000608 INF: FPGA: Recv ZSGSRD 35302
17-03-18 05:11:59.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:11:59.394 -07 000000579 INF: FPGA: Recv ZSGSRD 35301
17-03-18 05:11:59.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:11:59.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:11:59.414 -07 000000608 INF: FPGA: Recv ZPIEZORD 31034
17-03-18 05:11:59.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:11:59.424 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.4 V.
17-03-18 05:11:59.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35301 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35296 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:11:59.424 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 4, negNoise = 5
17-03-18 05:11:59.424 -07 000000610 INF: Z Motor: After move to -0.167091, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:11:59.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 05:11:59.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:11:59.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:11:59.424 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:11:59.424 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:11:59.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:11:59.424 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:11:59.424 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:11:59.424 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:11:59.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:11:59.424 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:11:59.424 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:11:59.424 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:11:59.434 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:11:59.434 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:11:59.434 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:11:59.434 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:11:59.444 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:11:59.444 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:11:59.444 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:11:59.444 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:11:59.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36678 150\n [Camera]
17-03-18 05:11:59.654 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:11:59.924 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.993549,
17-03-18 05:12:00.094 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:00.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:00.094 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:00.094 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:00.094 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:12:00.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:00.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:00.104 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:00.104 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:00.104 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:12:00.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36678 819
17-03-18 05:12:00.434 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:00.474 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:12:00.474 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:12:00.474 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:00.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:12:00.474 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:00.474 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:12:00.474 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:12:00.474 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:00.484 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:00.484 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:12:00.644 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:00.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:00.644 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:00.644 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:00.644 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:12:00.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:00.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:00.644 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:00.644 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:00.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:12:00.834 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:00.834 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:00.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36678 150' command took 2 ms to send, 1368 ms to get response, and 1393 ms overall
17-03-18 05:12:00.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:12:00.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167104464827439. ------
17-03-18 05:12:00.844 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17388 mm
17-03-18 05:12:00.844 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:00.844 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:00.844 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:00.844 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37985, sync = True, waitForSettling = False)
17-03-18 05:12:00.844 -07 000000474 INF: Z Motor: Moving to -0.173884 mm, started at -0.167104 mm, distance = -6.78 um
17-03-18 05:12:00.844 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:12:00.844 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:12:00.854 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:00.854 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:00.854 -07 000000625 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:12:00.864 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:00.864 -07 000000502 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:00.864 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:00.864 -07 000000502 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:12:00.864 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:00.874 -07 000000474 INF: FPGA: Xmit ZDACW 37985\n [Z Motor]
17-03-18 05:12:00.874 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:12:00.884 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:00.884 -07 000000474 INF: FPGA: 'ZDACW 37985' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:12:00.894 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:00.894 -07 000000461 INF: FPGA: Recv ZDACR 37985
17-03-18 05:12:00.904 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:00.904 -07 000000474 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:12:01.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:12:01.034 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:12:01.034 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:01.034 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:01.044 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:12:01.044 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:12:01.044 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:01.044 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:12:01.044 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:12:01.044 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:12:01.064 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:01.064 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 05:12:01.254 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:12:01.254 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:01.304 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:01.314 -07 000000467 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:12:01.314 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:01.314 -07 000000502 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:01.314 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:12:01.314 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-18 05:12:01.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:02.264 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:02.264 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:12:02.274 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.274 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:02.304 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:02.304 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:12:02.304 -07 000000502 INF: Y Motor: Moved to 71.5186 after 1453 ms (table move)
17-03-18 05:12:02.304 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173884 mm (DAC = 37985)
17-03-18 05:12:02.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36360
17-03-18 05:12:02.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:12:02.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.314 -07 000000447 INF: FPGA: Recv ZSGSRD 36356
17-03-18 05:12:02.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.324 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.324 -07 000000581 INF: FPGA: Recv ZSGSRD 36358
17-03-18 05:12:02.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.334 -07 000000461 INF: FPGA: Recv ZSGSRD 36356
17-03-18 05:12:02.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.344 -07 000000479 INF: FPGA: Recv ZSGSRD 36355
17-03-18 05:12:02.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.354 -07 000000467 INF: FPGA: Recv ZSGSRD 36364
17-03-18 05:12:02.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.364 -07 000000608 INF: FPGA: Recv ZSGSRD 36351
17-03-18 05:12:02.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.374 -07 000000581 INF: FPGA: Recv ZSGSRD 36351
17-03-18 05:12:02.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.384 -07 000000461 INF: FPGA: Recv ZSGSRD 36356
17-03-18 05:12:02.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:02.394 -07 000000625 INF: FPGA: Recv ZSGSRD 36361
17-03-18 05:12:02.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.404 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:02.404 -07 000000606 INF: FPGA: Recv ZPIEZORD 32416
17-03-18 05:12:02.414 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:02.414 -07 000000382 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.7 V.
17-03-18 05:12:02.414 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36357 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36356 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36351 (-173.0 uncal um), Max = 36364 (-173.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:12:02.414 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36357, posNoise = 7, negNoise = 6
17-03-18 05:12:02.414 -07 000000382 INF: Z Motor: After move to -0.173884, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:02.414 -07 000000382 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:12:02.414 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:02.464 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 05:12:02.464 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:02.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:02.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:02.464 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:02.464 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:02.464 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:02.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:02.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:02.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:02.474 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:02.474 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:02.484 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:12:02.484 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:12:02.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:02.534 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:02.824 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:02.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:02.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:02.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 05:12:02.864 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:02.874 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:02.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:12:02.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:12:02.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:02.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:02.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:12:02.974 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:02.974 -07 000000512 INF: Autofocus start
17-03-18 05:12:02.974 -07 000000512 INF: MeasureProfile start
17-03-18 05:12:02.974 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:02.984 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:02.984 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:02.984 -07 000000512 INF: MeasureProfile done
17-03-18 05:12:02.984 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:12:02.984 -07 000000512 INF: Autofocus finished
17-03-18 05:12:03.184 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:03.184 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:03.184 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173888432849138. ----------
17-03-18 05:12:03.194 -07 000000610 INF: Cycle	134	Tile	15	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:03.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36482, sync = True, waitForSettling = True)
17-03-18 05:12:03.194 -07 000000610 INF: Z Motor: Moving to -0.167004 mm, started at -0.173888 mm, distance = 6.88 um
17-03-18 05:12:03.194 -07 000000610 INF: FPGA: Xmit ZDACW 36482\n [Z Motor]
17-03-18 05:12:03.194 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:12:03.204 -07 000000610 INF: FPGA: 'ZDACW 36482' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:12:03.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:03.204 -07 000000579 INF: FPGA: Recv ZDACR 36482
17-03-18 05:12:03.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.364 -07 000000608 INF: FPGA: Recv ZSGSRD 35286
17-03-18 05:12:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.374 -07 000000501 INF: FPGA: Recv ZSGSRD 35290
17-03-18 05:12:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35286
17-03-18 05:12:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.394 -07 000000474 INF: FPGA: Recv ZSGSRD 35280
17-03-18 05:12:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.404 -07 000000606 INF: FPGA: Recv ZSGSRD 35284
17-03-18 05:12:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:12:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35285
17-03-18 05:12:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.434 -07 000000579 INF: FPGA: Recv ZSGSRD 35283
17-03-18 05:12:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:12:03.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:03.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:12:03.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:03.464 -07 000000569 INF: FPGA: Recv ZPIEZORD 30982
17-03-18 05:12:03.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:03.474 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 05:12:03.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35286 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35286 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35280 (-166.1 uncal um), Max = 35293 (-166.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:12:03.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35286, posNoise = 7, negNoise = 6
17-03-18 05:12:03.474 -07 000000610 INF: Z Motor: After move to -0.167004, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:03.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:12:03.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:03.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:03.474 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:03.474 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:03.474 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:03.474 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:03.474 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:03.474 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:03.474 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:03.474 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:03.484 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:03.484 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:03.484 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:03.484 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:03.484 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:12:03.484 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:03.494 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:12:03.494 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:12:03.494 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:12:03.494 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:12:03.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36659 150\n [Camera]
17-03-18 05:12:03.694 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:04.124 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:04.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:04.134 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:04.134 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:04.134 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:12:04.134 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:04.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:04.134 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:04.134 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:04.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:12:04.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36659 819
17-03-18 05:12:04.474 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:04.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:12:04.514 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:12:04.514 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:04.514 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:12:04.514 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:12:04.514 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:04.514 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:04.514 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:04.514 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:12:04.524 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:12:04.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:04.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:04.684 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:04.684 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:04.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:12:04.684 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:04.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:04.684 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:04.684 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:04.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:12:04.874 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:04.874 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:04.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36659 150' command took 4 ms to send, 1373 ms to get response, and 1380 ms overall
17-03-18 05:12:04.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:12:04.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167008101645312. ------
17-03-18 05:12:04.884 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:04.884 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17339 mm
17-03-18 05:12:04.884 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:04.884 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:04.884 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:12:04.884 -07 000000579 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:12:04.884 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37878, sync = True, waitForSettling = False)
17-03-18 05:12:04.884 -07 000000608 INF: Z Motor: Moving to -0.173394 mm, started at -0.167008 mm, distance = -6.39 um
17-03-18 05:12:04.894 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:04.894 -07 000000608 INF: FPGA: Xmit ZDACW 37878\n [Z Motor]
17-03-18 05:12:04.894 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:12:04.904 -07 000000608 INF: FPGA: 'ZDACW 37878' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:12:04.904 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:04.904 -07 000000606 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:12:04.914 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:04.914 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:12:04.914 -07 000000579 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:04.914 -07 000000579 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:04.914 -07 000000579 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:12:04.924 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:04.924 -07 000000569 INF: FPGA: Recv ZDACR 37878
17-03-18 05:12:04.934 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:12:04.934 -07 000000608 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:12:04.934 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:05.084 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:12:05.084 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:12:05.084 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:05.084 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:12:05.084 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:12:05.084 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:05.094 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:05.094 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:12:05.094 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:12:05.094 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:12:05.114 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:05.114 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:12:05.284 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.996267,
17-03-18 05:12:05.304 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:12:05.304 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:12:05.364 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:05.364 -07 000000581 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:12:05.374 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:05.374 -07 000000579 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:05.374 -07 000000579 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:12:05.374 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 05:12:06.324 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:06.324 -07 000000447 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:12:06.334 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:06.334 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:06.364 -07 000000579 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:06.364 -07 000000579 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:12:06.364 -07 000000579 INF: Y Motor: Moved to 72.3491 after 1476 ms (table move)
17-03-18 05:12:06.364 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173394 mm (DAC = 37878)
17-03-18 05:12:06.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.364 -07 000000512 INF: FPGA: Recv ZSGSRD 36288
17-03-18 05:12:06.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:12:06.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.374 -07 000000455 INF: FPGA: Recv ZSGSRD 36280
17-03-18 05:12:06.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36275
17-03-18 05:12:06.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.394 -07 000000479 INF: FPGA: Recv ZSGSRD 36283
17-03-18 05:12:06.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.404 -07 000000480 INF: FPGA: Recv ZSGSRD 36283
17-03-18 05:12:06.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.414 -07 000000608 INF: FPGA: Recv ZSGSRD 36288
17-03-18 05:12:06.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36283
17-03-18 05:12:06.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:06.434 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.434 -07 000000579 INF: FPGA: Recv ZSGSRD 36287
17-03-18 05:12:06.444 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.444 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.444 -07 000000581 INF: FPGA: Recv ZSGSRD 36282
17-03-18 05:12:06.454 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:06.454 -07 000000512 INF: FPGA: Recv ZSGSRD 36277
17-03-18 05:12:06.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.464 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:06.464 -07 000000447 INF: FPGA: Recv ZPIEZORD 32339
17-03-18 05:12:06.474 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:06.474 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.7 V.
17-03-18 05:12:06.474 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36283 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36283 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36275 (-172.5 uncal um), Max = 36288 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:12:06.474 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36283, posNoise = 5, negNoise = 8
17-03-18 05:12:06.474 -07 000000424 INF: Z Motor: After move to -0.173394, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:06.474 -07 000000424 INF: Z Motor: Settle wait time = 1479 ms, measure time = 105 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:12:06.474 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:06.524 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1638 ms
17-03-18 05:12:06.524 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:06.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:06.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:06.524 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:06.524 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:06.524 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:06.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:06.524 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:06.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:06.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:06.524 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:06.544 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:12:06.544 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:12:06.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:06.584 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:06.744 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:06.884 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:06.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:06.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:06.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 05:12:06.924 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:06.924 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:06.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:12:07.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:12:07.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:07.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:12:07.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:12:07.024 -07 000000569 INF: Autofocus start
17-03-18 05:12:07.024 -07 000000569 INF: MeasureProfile start
17-03-18 05:12:07.024 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:07.024 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:07.034 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:07.034 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:07.034 -07 000000569 INF: MeasureProfile done
17-03-18 05:12:07.034 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:12:07.034 -07 000000569 INF: Autofocus finished
17-03-18 05:12:07.234 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:07.234 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:07.234 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173413041150648. ----------
17-03-18 05:12:07.234 -07 000000610 INF: Cycle	134	Tile	16	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:07.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36410, sync = True, waitForSettling = True)
17-03-18 05:12:07.244 -07 000000610 INF: Z Motor: Moving to -0.166674 mm, started at -0.173413 mm, distance = 6.74 um
17-03-18 05:12:07.244 -07 000000610 INF: FPGA: Xmit ZDACW 36410\n [Z Motor]
17-03-18 05:12:07.244 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:12:07.254 -07 000000610 INF: FPGA: 'ZDACW 36410' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:07.254 -07 000000447 INF: FPGA: Recv ZDACR 36410
17-03-18 05:12:07.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:07.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35232
17-03-18 05:12:07.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:07.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.424 -07 000000512 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:12:07.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.434 -07 000000501 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:12:07.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.444 -07 000000581 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:12:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.454 -07 000000625 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:12:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.464 -07 000000382 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:12:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.474 -07 000000569 INF: FPGA: Recv ZSGSRD 35238
17-03-18 05:12:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:12:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.494 -07 000000461 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:12:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:07.504 -07 000000606 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:12:07.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:07.514 -07 000000579 INF: FPGA: Recv ZPIEZORD 30938
17-03-18 05:12:07.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:07.524 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.5 V.
17-03-18 05:12:07.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35232 (-165.8 uncal um), Max = 35239 (-165.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:07.524 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 3, negNoise = 4
17-03-18 05:12:07.524 -07 000000610 INF: Z Motor: After move to -0.166674, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:07.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:12:07.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:07.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:07.524 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:07.524 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:07.524 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:07.524 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:07.524 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:07.524 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:07.524 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:07.524 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:07.524 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 05:12:07.524 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:07.534 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:07.534 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:07.534 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:07.534 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:07.544 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:12:07.544 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:12:07.544 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:12:07.544 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:12:07.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36587 150\n [Camera]
17-03-18 05:12:07.744 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:08.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:12:08.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:12:08.184 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:08.184 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:08.184 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:12:08.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:12:08.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:12:08.184 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:08.184 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:08.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:12:08.374 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36587 819
17-03-18 05:12:08.524 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:08.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:12:08.564 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:12:08.564 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:08.564 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:12:08.564 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:12:08.564 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:08.564 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:08.564 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:12:08.564 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:08.574 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:12:08.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:08.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:08.734 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:08.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:08.734 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:08.874 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:08.874 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:08.874 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:12:08.884 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:08.884 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 05:12:08.924 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:08.924 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:08.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36587 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-18 05:12:08.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:12:08.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166686891038224. ------
17-03-18 05:12:08.924 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:08.924 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17317 mm
17-03-18 05:12:08.924 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:08.934 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:12:08.934 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:12:08.934 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:08.934 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:08.934 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:08.934 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37830, sync = True, waitForSettling = False)
17-03-18 05:12:08.934 -07 000000579 INF: Z Motor: Moving to -0.173175 mm, started at -0.166687 mm, distance = -6.49 um
17-03-18 05:12:08.934 -07 000000626 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:12:08.944 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:08.944 -07 000000501 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:08.944 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:08.944 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:12:08.944 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:08.954 -07 000000579 INF: FPGA: Xmit ZDACW 37830\n [Z Motor]
17-03-18 05:12:08.954 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:12:08.964 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:08.964 -07 000000579 INF: FPGA: 'ZDACW 37830' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:12:08.974 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:08.974 -07 000000618 INF: FPGA: Recv ZDACR 37830
17-03-18 05:12:08.984 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:12:08.984 -07 000000579 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:12:09.144 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:09.144 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 05:12:09.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:12:09.274 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:12:09.274 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:09.274 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:12:09.274 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:12:09.274 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:09.274 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:09.284 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:09.284 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 548 ms.
17-03-18 05:12:09.284 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:12:09.334 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:12:09.334 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:09.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:09.394 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:12:09.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:09.394 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:09.394 -07 000000501 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:12:09.394 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-18 05:12:10.344 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:10.344 -07 000000474 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:12:10.354 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:10.354 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:10.384 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:10.384 -07 000000501 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:10.384 -07 000000501 INF: Y Motor: Moved to 73.1753 after 1451 ms (table move)
17-03-18 05:12:10.384 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173175 mm (DAC = 37830)
17-03-18 05:12:10.384 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.384 -07 000000569 INF: FPGA: Recv ZSGSRD 36246
17-03-18 05:12:10.394 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:10.394 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.394 -07 000000608 INF: FPGA: Recv ZSGSRD 36253
17-03-18 05:12:10.404 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.404 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.404 -07 000000626 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:12:10.414 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.414 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.414 -07 000000424 INF: FPGA: Recv ZSGSRD 36252
17-03-18 05:12:10.424 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.424 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36247
17-03-18 05:12:10.434 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.434 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.434 -07 000000447 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:12:10.444 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.444 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.444 -07 000000512 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:12:10.454 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.454 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.454 -07 000000618 INF: FPGA: Recv ZSGSRD 36247
17-03-18 05:12:10.464 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.464 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.464 -07 000000581 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:12:10.474 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.474 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:10.474 -07 000000625 INF: FPGA: Recv ZSGSRD 36251
17-03-18 05:12:10.484 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.484 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:10.484 -07 000000479 INF: FPGA: Recv ZPIEZORD 32271
17-03-18 05:12:10.494 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:10.494 -07 000000480 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.8 V.
17-03-18 05:12:10.494 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36249 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36248 (-172.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36246 (-172.3 uncal um), Max = 36253 (-172.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:12:10.494 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36249, posNoise = 4, negNoise = 3
17-03-18 05:12:10.494 -07 000000480 INF: Z Motor: After move to -0.173175, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:10.494 -07 000000480 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:12:10.494 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:10.544 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:12:10.544 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:10.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:10.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:10.544 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:10.544 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:10.544 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:10.544 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:10.544 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:10.544 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:10.554 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:10.554 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:10.564 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:12:10.564 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:12:10.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:10.614 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:10.644 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.993549,
17-03-18 05:12:10.914 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:10.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:10.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:10.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 05:12:10.944 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:10.954 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:10.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:12:11.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:12:11.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:11.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:11.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:12:11.054 -07 000000424 INF: Autofocus start
17-03-18 05:12:11.054 -07 000000424 INF: MeasureProfile start
17-03-18 05:12:11.054 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:11.054 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:11.064 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:11.064 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:11.074 -07 000000424 INF: MeasureProfile done
17-03-18 05:12:11.074 -07 000000424 INF: X=-32  Z correction [um]=-0.2344
17-03-18 05:12:11.074 -07 000000424 INF: Autofocus finished
17-03-18 05:12:11.264 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:11.264 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:11.264 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173194617937828. ----------
17-03-18 05:12:11.264 -07 000000610 INF: Cycle	134	Tile	17	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:11.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36291, sync = True, waitForSettling = True)
17-03-18 05:12:11.274 -07 000000610 INF: Z Motor: Moving to -0.166130 mm, started at -0.173195 mm, distance = 7.07 um
17-03-18 05:12:11.274 -07 000000610 INF: FPGA: Xmit ZDACW 36291\n [Z Motor]
17-03-18 05:12:11.274 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:12:11.284 -07 000000610 INF: FPGA: 'ZDACW 36291' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:11.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:11.284 -07 000000461 INF: FPGA: Recv ZDACR 36291
17-03-18 05:12:11.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:11.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35157
17-03-18 05:12:11.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:11.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.454 -07 000000618 INF: FPGA: Recv ZSGSRD 35157
17-03-18 05:12:11.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.464 -07 000000447 INF: FPGA: Recv ZSGSRD 35149
17-03-18 05:12:11.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35147
17-03-18 05:12:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.484 -07 000000626 INF: FPGA: Recv ZSGSRD 35153
17-03-18 05:12:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.494 -07 000000424 INF: FPGA: Recv ZSGSRD 35152
17-03-18 05:12:11.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.504 -07 000000625 INF: FPGA: Recv ZSGSRD 35147
17-03-18 05:12:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.514 -07 000000606 INF: FPGA: Recv ZSGSRD 35153
17-03-18 05:12:11.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.524 -07 000000608 INF: FPGA: Recv ZSGSRD 35149
17-03-18 05:12:11.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:11.534 -07 000000626 INF: FPGA: Recv ZSGSRD 35148
17-03-18 05:12:11.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:11.544 -07 000000455 INF: FPGA: Recv ZPIEZORD 30826
17-03-18 05:12:11.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:11.554 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.5 V.
17-03-18 05:12:11.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35151 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35150 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35147 (-165.2 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:11.554 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35151, posNoise = 6, negNoise = 4
17-03-18 05:12:11.554 -07 000000610 INF: Z Motor: After move to -0.166130, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:11.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:12:11.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:11.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:11.554 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:11.554 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:11.554 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:11.554 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:11.554 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:11.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:11.554 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:11.554 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:11.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:11.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:11.564 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:11.564 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:11.564 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:11.564 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:11.574 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:12:11.574 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:12:11.574 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:12:11.574 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:12:11.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36468 150\n [Camera]
17-03-18 05:12:11.744 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:11.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:11.774 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:12.204 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:12.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:12.214 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:12.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:12.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:12.214 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:12.214 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:12.214 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:12:12.224 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:12.224 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 05:12:12.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36468 822
17-03-18 05:12:12.554 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:12.594 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:12:12.594 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:12:12.594 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:12.594 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:12:12.594 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:12:12.594 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:12.594 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:12.594 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:12:12.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:12.614 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:12:12.764 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:12.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:12.764 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:12.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:12.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:12.764 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:12.894 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:12.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 05:12:12.894 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:12.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 05:12:12.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:12:12.954 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:12.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36468 150' command took 2 ms to send, 1373 ms to get response, and 1379 ms overall
17-03-18 05:12:12.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:12:12.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166140833006174. ------
17-03-18 05:12:12.954 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:12.954 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17190 mm
17-03-18 05:12:12.954 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:12.964 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:12.964 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:12.964 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:12:12.964 -07 000000625 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:12:12.964 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:12.964 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37552, sync = True, waitForSettling = False)
17-03-18 05:12:12.964 -07 000000455 INF: Z Motor: Moving to -0.171902 mm, started at -0.166141 mm, distance = -5.76 um
17-03-18 05:12:12.974 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:12.974 -07 000000480 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:12:12.984 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:12:12.984 -07 000000625 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:12.984 -07 000000455 INF: FPGA: Xmit ZDACW 37552\n [Z Motor]
17-03-18 05:12:12.984 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:12:12.984 -07 000000625 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:12.984 -07 000000625 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:12:12.994 -07 000000455 INF: FPGA: 'ZDACW 37552' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:12:12.994 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:13.004 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:13.004 -07 000000626 INF: FPGA: Recv ZDACR 37552
17-03-18 05:12:13.014 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:13.014 -07 000000455 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:12:13.164 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:13.164 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:12:13.274 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:12:13.274 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:12:13.274 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:13.274 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:13.274 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:12:13.274 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:12:13.274 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:13.284 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:13.284 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 05:12:13.284 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 05:12:13.364 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:12:13.364 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 05:12:13.404 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:13.414 -07 000000467 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:12:13.414 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:13.414 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:13.414 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:12:13.414 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.847 mm, average velocity = 2.218 mm/sec
17-03-18 05:12:14.364 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:14.364 -07 000000480 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:12:14.374 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.374 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:14.394 -07 000000625 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:14.394 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:14.394 -07 000000625 INF: Y Motor: Moved to 74.0073 after 1432 ms (table move)
17-03-18 05:12:14.394 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171902 mm (DAC = 37552)
17-03-18 05:12:14.394 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.404 -07 000000501 INF: FPGA: Recv ZSGSRD 36053
17-03-18 05:12:14.404 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 05:12:14.404 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.404 -07 000000618 INF: FPGA: Recv ZSGSRD 36042
17-03-18 05:12:14.414 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:14.414 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36046
17-03-18 05:12:14.424 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.424 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.424 -07 000000474 INF: FPGA: Recv ZSGSRD 36056
17-03-18 05:12:14.434 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:14.434 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.434 -07 000000512 INF: FPGA: Recv ZSGSRD 36045
17-03-18 05:12:14.444 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.444 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.444 -07 000000581 INF: FPGA: Recv ZSGSRD 36044
17-03-18 05:12:14.454 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.454 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.454 -07 000000626 INF: FPGA: Recv ZSGSRD 36049
17-03-18 05:12:14.464 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.464 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.464 -07 000000608 INF: FPGA: Recv ZSGSRD 36042
17-03-18 05:12:14.474 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.474 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.474 -07 000000474 INF: FPGA: Recv ZSGSRD 36052
17-03-18 05:12:14.484 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.484 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:14.484 -07 000000447 INF: FPGA: Recv ZSGSRD 36051
17-03-18 05:12:14.494 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.494 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:14.494 -07 000000382 INF: FPGA: Recv ZPIEZORD 32041
17-03-18 05:12:14.504 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:14.504 -07 000000479 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -8.9 V.
17-03-18 05:12:14.504 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36048 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36048 (-171.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36042 (-171.0 uncal um), Max = 36056 (-171.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:12:14.504 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36048, posNoise = 8, negNoise = 6
17-03-18 05:12:14.504 -07 000000479 INF: Z Motor: After move to -0.171902, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:14.504 -07 000000479 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-18 05:12:14.504 -07 000000479 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:14.554 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 05:12:14.554 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:14.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:14.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:14.554 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:14.554 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:14.554 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:14.554 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:14.554 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:12:14.554 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:14.564 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:14.564 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:14.574 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:12:14.574 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:12:14.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:14.624 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:14.924 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:14.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:14.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:14.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 05:12:14.964 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:14.964 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:14.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 05:12:15.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:12:15.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:15.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:15.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:12:15.064 -07 000000479 INF: Autofocus start
17-03-18 05:12:15.064 -07 000000479 INF: MeasureProfile start
17-03-18 05:12:15.064 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:15.064 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:15.074 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:12:15.074 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:15.074 -07 000000479 INF: MeasureProfile done
17-03-18 05:12:15.074 -07 000000479 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:12:15.074 -07 000000479 INF: Autofocus finished
17-03-18 05:12:15.274 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:15.274 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:15.274 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.171903351297334. ----------
17-03-18 05:12:15.284 -07 000000610 INF: Cycle	134	Tile	18	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:15.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36103, sync = True, waitForSettling = True)
17-03-18 05:12:15.284 -07 000000610 INF: Z Motor: Moving to -0.165269 mm, started at -0.171903 mm, distance = 6.63 um
17-03-18 05:12:15.284 -07 000000610 INF: FPGA: Xmit ZDACW 36103\n [Z Motor]
17-03-18 05:12:15.284 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:12:15.294 -07 000000610 INF: FPGA: 'ZDACW 36103' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:15.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:15.294 -07 000000479 INF: FPGA: Recv ZDACR 36103
17-03-18 05:12:15.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:15.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:15.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.454 -07 000000467 INF: FPGA: Recv ZSGSRD 35024
17-03-18 05:12:15.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:15.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35018
17-03-18 05:12:15.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:15.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35015
17-03-18 05:12:15.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:15.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.484 -07 000000461 INF: FPGA: Recv ZSGSRD 35021
17-03-18 05:12:15.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:15.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.504 -07 000000447 INF: FPGA: Recv ZSGSRD 35019
17-03-18 05:12:15.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:15.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.524 -07 000000625 INF: FPGA: Recv ZSGSRD 35018
17-03-18 05:12:15.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:15.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.544 -07 000000579 INF: FPGA: Recv ZSGSRD 35015
17-03-18 05:12:15.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:15.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.564 -07 000000625 INF: FPGA: Recv ZSGSRD 35015
17-03-18 05:12:15.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:15.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.584 -07 000000502 INF: FPGA: Recv ZSGSRD 35019
17-03-18 05:12:15.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:15.594 -07 000000608 INF: FPGA: Recv ZSGSRD 35011
17-03-18 05:12:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:15.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:15.604 -07 000000606 INF: FPGA: Recv ZPIEZORD 30653
17-03-18 05:12:15.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:15.614 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.6 V.
17-03-18 05:12:15.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35018 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35018 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35011 (-164.4 uncal um), Max = 35024 (-164.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:12:15.614 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35018, posNoise = 6, negNoise = 7
17-03-18 05:12:15.614 -07 000000610 INF: Z Motor: After move to -0.165269, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:15.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 05:12:15.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:15.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:15.614 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:15.614 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:15.614 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:15.614 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:15.614 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:15.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:15.614 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:15.614 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:15.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:15.614 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:15.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:12:15.624 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:15.624 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:15.624 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:15.634 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:12:15.634 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:12:15.634 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:12:15.634 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:12:15.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36279 150\n [Camera]
17-03-18 05:12:15.834 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:16.004 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.015368,
17-03-18 05:12:16.264 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:16.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:16.264 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:16.274 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:16.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:16.274 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:16.274 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:16.274 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:12:16.274 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:16.274 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 05:12:16.464 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36279 819
17-03-18 05:12:16.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:16.654 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:12:16.654 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:12:16.654 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:16.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:12:16.654 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:12:16.654 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:16.654 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:12:16.654 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:12:16.654 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:12:16.664 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:12:16.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:16.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:16.814 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:16.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:16.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:16.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:16.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:12:16.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:16.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:16.824 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:16.824 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:16.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:12:17.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:12:17.014 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:17.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36279 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-18 05:12:17.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:12:17.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.16528641279132. ------
17-03-18 05:12:17.014 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:17.134 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17159 mm
17-03-18 05:12:17.134 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:17.134 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:17.144 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 119 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 05:12:17.144 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:17.144 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37484, sync = True, waitForSettling = False)
17-03-18 05:12:17.144 -07 000000461 INF: Z Motor: Moving to -0.171591 mm, started at -0.165286 mm, distance = -6.30 um
17-03-18 05:12:17.144 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:12:17.144 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:12:17.154 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:17.154 -07 000000474 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:12:17.164 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:12:17.164 -07 000000424 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:17.164 -07 000000461 INF: FPGA: Xmit ZDACW 37484\n [Z Motor]
17-03-18 05:12:17.164 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:12:17.164 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:17.164 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:12:17.174 -07 000000461 INF: FPGA: 'ZDACW 37484' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:12:17.174 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:17.174 -07 000000606 INF: FPGA: Recv ZDACR 37484
17-03-18 05:12:17.184 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:17.184 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:17.184 -07 000000461 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:12:17.214 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:12:17.214 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:12:17.214 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:17.224 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:12:17.224 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:12:17.224 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:17.224 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:17.224 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:12:17.224 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:12:17.234 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:12:17.344 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:17.344 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:12:17.554 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:12:17.554 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:12:17.584 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:17.594 -07 000000606 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:12:17.594 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:17.594 -07 000000424 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:17.594 -07 000000424 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:12:17.594 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:12:18.544 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:18.544 -07 000000447 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:12:18.554 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.554 -07 000000424 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:18.574 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:18.574 -07 000000424 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:18.574 -07 000000424 INF: Y Motor: Moved to 74.8311 after 1429 ms (table move)
17-03-18 05:12:18.574 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171591 mm (DAC = 37484)
17-03-18 05:12:18.574 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.574 -07 000000502 INF: FPGA: Recv ZSGSRD 35998
17-03-18 05:12:18.584 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:18.584 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.584 -07 000000606 INF: FPGA: Recv ZSGSRD 35996
17-03-18 05:12:18.594 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.594 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.594 -07 000000474 INF: FPGA: Recv ZSGSRD 35998
17-03-18 05:12:18.604 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.604 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.604 -07 000000461 INF: FPGA: Recv ZSGSRD 35994
17-03-18 05:12:18.614 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.614 -07 000000382 INF: FPGA: Recv ZSGSRD 36001
17-03-18 05:12:18.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.624 -07 000000579 INF: FPGA: Recv ZSGSRD 36006
17-03-18 05:12:18.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.634 -07 000000608 INF: FPGA: Recv ZSGSRD 36008
17-03-18 05:12:18.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.644 -07 000000474 INF: FPGA: Recv ZSGSRD 36002
17-03-18 05:12:18.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35992
17-03-18 05:12:18.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:18.664 -07 000000461 INF: FPGA: Recv ZSGSRD 35997
17-03-18 05:12:18.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.674 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:18.674 -07 000000424 INF: FPGA: Recv ZPIEZORD 31999
17-03-18 05:12:18.684 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:18.684 -07 000000581 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.8 V.
17-03-18 05:12:18.684 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35999 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35998 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35992 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:12:18.684 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35999, posNoise = 9, negNoise = 7
17-03-18 05:12:18.684 -07 000000581 INF: Z Motor: After move to -0.171591, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:18.684 -07 000000581 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-18 05:12:18.684 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:18.734 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-18 05:12:18.734 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:18.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:18.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:18.734 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:18.734 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:18.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:18.734 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:18.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:18.734 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:18.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:18.744 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:18.754 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:12:18.754 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:12:18.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:18.804 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:19.104 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:19.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:19.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:19.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:12:19.144 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:19.144 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:19.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:12:19.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:12:19.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:19.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:19.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:12:19.244 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:19.244 -07 000000480 INF: Autofocus start
17-03-18 05:12:19.244 -07 000000480 INF: MeasureProfile start
17-03-18 05:12:19.244 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:19.254 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:19.254 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:19.254 -07 000000480 INF: MeasureProfile done
17-03-18 05:12:19.254 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:12:19.254 -07 000000480 INF: Autofocus finished
17-03-18 05:12:19.454 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:19.454 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:19.454 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171588564902388. ----------
17-03-18 05:12:19.454 -07 000000610 INF: Cycle	134	Tile	19	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:19.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35999, sync = True, waitForSettling = True)
17-03-18 05:12:19.464 -07 000000610 INF: Z Motor: Moving to -0.164793 mm, started at -0.171589 mm, distance = 6.80 um
17-03-18 05:12:19.464 -07 000000610 INF: FPGA: Xmit ZDACW 35999\n [Z Motor]
17-03-18 05:12:19.464 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:12:19.474 -07 000000610 INF: FPGA: 'ZDACW 35999' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:12:19.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:19.474 -07 000000461 INF: FPGA: Recv ZDACR 35999
17-03-18 05:12:19.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:19.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.634 -07 000000479 INF: FPGA: Recv ZSGSRD 34937
17-03-18 05:12:19.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:19.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.644 -07 000000424 INF: FPGA: Recv ZSGSRD 34943
17-03-18 05:12:19.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.654 -07 000000626 INF: FPGA: Recv ZSGSRD 34944
17-03-18 05:12:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.664 -07 000000467 INF: FPGA: Recv ZSGSRD 34940
17-03-18 05:12:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.674 -07 000000447 INF: FPGA: Recv ZSGSRD 34942
17-03-18 05:12:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.684 -07 000000474 INF: FPGA: Recv ZSGSRD 34946
17-03-18 05:12:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.694 -07 000000461 INF: FPGA: Recv ZSGSRD 34947
17-03-18 05:12:19.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.704 -07 000000608 INF: FPGA: Recv ZSGSRD 34939
17-03-18 05:12:19.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.714 -07 000000569 INF: FPGA: Recv ZSGSRD 34941
17-03-18 05:12:19.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:19.724 -07 000000606 INF: FPGA: Recv ZSGSRD 34947
17-03-18 05:12:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:19.734 -07 000000579 INF: FPGA: Recv ZPIEZORD 30577
17-03-18 05:12:19.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:19.744 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.493 V. Piezo Error = -9.6 V.
17-03-18 05:12:19.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34943 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34942 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34937 (-163.9 uncal um), Max = 34947 (-164.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:12:19.744 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34943, posNoise = 4, negNoise = 6
17-03-18 05:12:19.744 -07 000000610 INF: Z Motor: After move to -0.164793, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:19.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:12:19.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:19.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:19.744 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:19.744 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:19.744 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:19.744 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:19.744 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:19.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:19.744 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:12:19.744 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:19.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:19.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:19.754 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:12:19.754 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:19.754 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:19.754 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:19.764 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:12:19.764 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:12:19.764 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:12:19.764 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:12:19.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36176 150\n [Camera]
17-03-18 05:12:19.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:20.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:20.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:20.404 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:20.404 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:20.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:20.404 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:20.404 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:20.404 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:12:20.414 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:20.414 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:12:20.594 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36176 819
17-03-18 05:12:20.744 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:20.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:12:20.794 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:12:20.794 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:20.794 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:12:20.794 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:12:20.794 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:20.794 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:20.794 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:12:20.794 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:20.804 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:12:20.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:20.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:20.954 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:20.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:20.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:20.954 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:20.954 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:20.954 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:12:20.954 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:20.954 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:12:21.144 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:21.144 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:21.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36176 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-18 05:12:21.354 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:12:21.354 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:12:21.354 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:21.364 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.012614,
17-03-18 05:12:21.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 408 ms.
17-03-18 05:12:21.364 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:12:21.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:21.364 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:12:21.364 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:12:21.364 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:12:21.374 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:21.374 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 05:12:21.414 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 45 ms.
17-03-18 05:12:21.414 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:12:21.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:12:21.454 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:12:21.454 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:12:21.464 -07 000000447 INF: FPGA: Recv EMCUR 
17-03-18 05:12:21.464 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:12:21.464 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:12:21.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:21.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:21.964 -07 000000382 INF: FPGA: Recv EMIN
17-03-18 05:12:21.964 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:12:21.964 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:12:21.964 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 05:12:21.974 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:21.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:21.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164804596880688. ------
17-03-18 05:12:21.974 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:21.974 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 05:12:21.974 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:21.974 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:21.984 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:21.984 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:12:21.984 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:21.984 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 05:12:21.984 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30427, sync = True, waitForSettling = False)
17-03-18 05:12:21.984 -07 000000424 INF: Z Motor: Moving to -0.139286 mm, started at -0.164805 mm, distance = 25.52 um
17-03-18 05:12:21.994 -07 000000424 INF: FPGA: Xmit ZDACW 30427\n [Z Motor]
17-03-18 05:12:21.994 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:12:22.004 -07 000000424 INF: FPGA: 'ZDACW 30427' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:12:22.004 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:22.004 -07 000000625 INF: FPGA: Recv YRDPOS 153256
17-03-18 05:12:22.014 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:12:22.014 -07 000000512 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:22.014 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:22.014 -07 000000608 INF: FPGA: Recv ZDACR 30427
17-03-18 05:12:22.014 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:12:22.014 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:12:22.024 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:22.024 -07 000000424 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:12:22.024 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:12:22.184 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:22.184 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:12:23.654 -07 000000579 INF: FPGA: Recv YMVTO 122702 23904
17-03-18 05:12:23.654 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1620 ms to get response, and 1631 ms overall
17-03-18 05:12:23.654 -07 000000512 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:12:23.654 -07 000000512 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:12:23.654 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.918 mm, average velocity = 9.147 mm/sec
17-03-18 05:12:26.504 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:26.504 -07 000000579 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:12:26.514 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:26.514 -07 000000512 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:26.554 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:26.554 -07 000000512 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:12:26.554 -07 000000512 INF: Y Motor: Moved to 59.9102 after 4569 ms
17-03-18 05:12:26.554 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139286 mm (DAC = 30427)
17-03-18 05:12:26.554 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.554 -07 000000608 INF: FPGA: Recv ZSGSRD 30972
17-03-18 05:12:26.564 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:26.564 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30968
17-03-18 05:12:26.574 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.574 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.574 -07 000000569 INF: FPGA: Recv ZSGSRD 30970
17-03-18 05:12:26.584 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.584 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.584 -07 000000581 INF: FPGA: Recv ZSGSRD 30967
17-03-18 05:12:26.594 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.594 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.594 -07 000000625 INF: FPGA: Recv ZSGSRD 30970
17-03-18 05:12:26.604 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.604 -07 000000474 INF: FPGA: Recv ZSGSRD 30972
17-03-18 05:12:26.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.614 -07 000000606 INF: FPGA: Recv ZSGSRD 30976
17-03-18 05:12:26.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.624 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.624 -07 000000618 INF: FPGA: Recv ZSGSRD 30967
17-03-18 05:12:26.634 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.634 -07 000000455 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:12:26.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:26.644 -07 000000625 INF: FPGA: Recv ZSGSRD 30976
17-03-18 05:12:26.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.654 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:26.654 -07 000000467 INF: FPGA: Recv ZPIEZORD 26401
17-03-18 05:12:26.664 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:26.664 -07 000000447 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.0 V.
17-03-18 05:12:26.664 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30971 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30971 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30976 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:26.664 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30971, posNoise = 5, negNoise = 4
17-03-18 05:12:26.664 -07 000000447 INF: Z Motor: After move to -0.139286, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:26.664 -07 000000447 INF: Z Motor: Settle wait time = 4572 ms, measure time = 106 ms (allowed 150 ms), total time = 4678 ms
17-03-18 05:12:26.664 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:26.714 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4733 ms
17-03-18 05:12:26.714 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:26.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:26.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:26.714 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:26.714 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:26.714 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:26.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:26.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:12:26.724 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:12:26.724 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.011254,
17-03-18 05:12:26.744 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:26.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:26.744 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:12:26.744 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:26.744 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:12:26.744 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:26.754 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:12:26.754 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 05:12:26.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:26.804 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:27.104 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:27.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:27.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:27.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 05:12:27.144 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:27.144 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:27.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:12:27.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:12:27.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:27.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:12:27.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:12:27.244 -07 000000626 INF: Image SNR check: start
17-03-18 05:12:27.244 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:27.244 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:27.254 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:12:27.254 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:27.254 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=117.27]
17-03-18 05:12:27.254 -07 000000626 INF: Autofocus start
17-03-18 05:12:27.254 -07 000000626 INF: MeasureProfile start
17-03-18 05:12:27.274 -07 000000626 INF: MeasureProfile done
17-03-18 05:12:27.274 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:12:27.274 -07 000000626 INF: Autofocus finished
17-03-18 05:12:27.454 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:27.454 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:27.454 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139287626253614. ----------
17-03-18 05:12:27.454 -07 000000610 INF: Cycle	134	Tile	1	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:27.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = True)
17-03-18 05:12:27.464 -07 000000610 INF: Z Motor: Moving to -0.132529 mm, started at -0.139288 mm, distance = 6.76 um
17-03-18 05:12:27.464 -07 000000610 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-18 05:12:27.464 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:12:27.474 -07 000000610 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:12:27.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:27.474 -07 000000424 INF: FPGA: Recv ZDACR 28951
17-03-18 05:12:27.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:27.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.634 -07 000000382 INF: FPGA: Recv ZSGSRD 29913
17-03-18 05:12:27.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:27.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29927
17-03-18 05:12:27.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.654 -07 000000618 INF: FPGA: Recv ZSGSRD 29919
17-03-18 05:12:27.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.664 -07 000000581 INF: FPGA: Recv ZSGSRD 29913
17-03-18 05:12:27.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.674 -07 000000502 INF: FPGA: Recv ZSGSRD 29923
17-03-18 05:12:27.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.684 -07 000000608 INF: FPGA: Recv ZSGSRD 29920
17-03-18 05:12:27.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.694 -07 000000625 INF: FPGA: Recv ZSGSRD 29922
17-03-18 05:12:27.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29916
17-03-18 05:12:27.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.714 -07 000000479 INF: FPGA: Recv ZSGSRD 29920
17-03-18 05:12:27.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:27.724 -07 000000447 INF: FPGA: Recv ZSGSRD 29927
17-03-18 05:12:27.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:27.734 -07 000000569 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 05:12:27.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:27.744 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -10.1 V.
17-03-18 05:12:27.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29920 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29920 (-131.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29913 (-131.7 uncal um), Max = 29927 (-131.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:12:27.744 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29920, posNoise = 7, negNoise = 7
17-03-18 05:12:27.744 -07 000000610 INF: Z Motor: After move to -0.132529, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:27.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:12:27.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:27.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:27.744 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:27.744 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:27.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:27.744 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:27.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:27.744 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:27.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:12:27.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:27.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:12:27.744 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:12:27.754 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:27.754 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:27.754 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:12:27.754 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:12:27.764 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:12:27.764 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:27.774 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:12:27.774 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:27.784 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:12:27.784 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 05:12:27.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29127 150\n [Camera]
17-03-18 05:12:27.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:28.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:28.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:28.414 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:28.414 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:28.414 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:12:28.414 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:28.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:28.424 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:28.424 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:28.424 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:12:28.604 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29127 819
17-03-18 05:12:28.754 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:28.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:12:28.794 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:12:28.794 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:28.794 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:12:28.794 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:12:28.794 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:28.804 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:28.804 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:28.804 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:12:28.804 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:12:28.964 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:28.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:28.964 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:28.964 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:28.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:12:28.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:28.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:28.974 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:28.974 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:28.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:12:29.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:12:29.164 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:29.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29127 150' command took 2 ms to send, 1370 ms to get response, and 1377 ms overall
17-03-18 05:12:29.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:29.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132535779292623. ------
17-03-18 05:12:29.284 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13891 mm
17-03-18 05:12:29.284 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:29.284 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:29.294 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:12:29.294 -07 000000479 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:12:29.294 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:29.294 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:29.294 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:29.294 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30345, sync = True, waitForSettling = False)
17-03-18 05:12:29.294 -07 000000606 INF: Z Motor: Moving to -0.138911 mm, started at -0.132536 mm, distance = -6.37 um
17-03-18 05:12:29.294 -07 000000579 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:12:29.304 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:12:29.304 -07 000000479 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:29.304 -07 000000479 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:29.304 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:29.304 -07 000000479 INF: Y Motor: Moving 1332 steps1
17-03-18 05:12:29.314 -07 000000606 INF: FPGA: Xmit ZDACW 30345\n [Z Motor]
17-03-18 05:12:29.314 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:12:29.324 -07 000000606 INF: FPGA: 'ZDACW 30345' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:12:29.324 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:29.334 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:29.334 -07 000000625 INF: FPGA: Recv ZDACR 30345
17-03-18 05:12:29.344 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:29.344 -07 000000606 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:12:29.374 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:12:29.374 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:12:29.374 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:29.374 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:12:29.374 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:12:29.374 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:29.374 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:29.384 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:12:29.384 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:12:29.384 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:12:29.504 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:29.504 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 05:12:29.694 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:12:29.694 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:29.734 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:29.744 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:12:29.744 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:29.744 -07 000000479 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:29.744 -07 000000479 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:12:29.744 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 05:12:30.694 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:30.694 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:12:30.704 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:30.704 -07 000000479 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:30.734 -07 000000479 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:30.734 -07 000000479 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:30.734 -07 000000479 INF: Y Motor: Moved to 60.7319 after 1440 ms (table move)
17-03-18 05:12:30.734 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138911 mm (DAC = 30345)
17-03-18 05:12:30.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.734 -07 000000480 INF: FPGA: Recv ZSGSRD 30919
17-03-18 05:12:30.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:30.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.744 -07 000000382 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:12:30.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.754 -07 000000424 INF: FPGA: Recv ZSGSRD 30915
17-03-18 05:12:30.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.764 -07 000000606 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:12:30.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.774 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:12:30.784 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.784 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.784 -07 000000502 INF: FPGA: Recv ZSGSRD 30912
17-03-18 05:12:30.794 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.794 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.794 -07 000000501 INF: FPGA: Recv ZSGSRD 30911
17-03-18 05:12:30.804 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.804 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.804 -07 000000461 INF: FPGA: Recv ZSGSRD 30919
17-03-18 05:12:30.814 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.814 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.814 -07 000000467 INF: FPGA: Recv ZSGSRD 30917
17-03-18 05:12:30.824 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.824 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:30.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:12:30.834 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.834 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:30.834 -07 000000618 INF: FPGA: Recv ZPIEZORD 26647
17-03-18 05:12:30.844 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:30.844 -07 000000512 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.4 V.
17-03-18 05:12:30.844 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30915 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30916 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30908 (-138.1 uncal um), Max = 30921 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:12:30.844 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30915, posNoise = 6, negNoise = 7
17-03-18 05:12:30.844 -07 000000512 INF: Z Motor: After move to -0.138911, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:30.844 -07 000000512 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-18 05:12:30.844 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:30.894 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 05:12:30.894 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:30.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:30.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:30.894 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:30.894 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:30.894 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:30.894 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:30.894 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:30.894 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:30.904 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:30.904 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:30.914 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:12:30.914 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:12:30.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:30.964 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:31.264 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:31.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:31.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:31.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:12:31.304 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:31.304 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:31.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:12:31.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:12:31.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:31.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:31.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:12:31.404 -07 000000461 INF: Autofocus start
17-03-18 05:12:31.404 -07 000000461 INF: MeasureProfile start
17-03-18 05:12:31.404 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:31.404 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:31.414 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:12:31.414 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:31.414 -07 000000461 INF: MeasureProfile done
17-03-18 05:12:31.414 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:12:31.414 -07 000000461 INF: Autofocus finished
17-03-18 05:12:31.614 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:31.614 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:12:31.614 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138927870373675. ----------
17-03-18 05:12:31.624 -07 000000610 INF: Cycle	134	Tile	2	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:31.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28853, sync = True, waitForSettling = True)
17-03-18 05:12:31.624 -07 000000610 INF: Z Motor: Moving to -0.132081 mm, started at -0.138928 mm, distance = 6.85 um
17-03-18 05:12:31.644 -07 000000610 INF: FPGA: Xmit ZDACW 28853\n [Z Motor]
17-03-18 05:12:31.644 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:12:31.654 -07 000000610 INF: FPGA: 'ZDACW 28853' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:12:31.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:31.654 -07 000000608 INF: FPGA: Recv ZDACR 28853
17-03-18 05:12:31.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:31.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:31.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.814 -07 000000502 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:12:31.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:31.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:12:31.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.834 -07 000000474 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:12:31.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.844 -07 000000608 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:12:31.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.854 -07 000000581 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:12:31.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.864 -07 000000455 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:12:31.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.874 -07 000000467 INF: FPGA: Recv ZSGSRD 29842
17-03-18 05:12:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:12:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.894 -07 000000579 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:12:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:31.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:12:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:31.914 -07 000000461 INF: FPGA: Recv ZPIEZORD 25240
17-03-18 05:12:31.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:31.924 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.1 V.
17-03-18 05:12:31.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29850 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29854 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:12:31.924 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29850, posNoise = 4, negNoise = 8
17-03-18 05:12:31.924 -07 000000610 INF: Z Motor: After move to -0.132081, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:31.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 297 ms)
17-03-18 05:12:31.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:31.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:31.924 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:31.924 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:31.924 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:31.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:31.924 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:31.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:31.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:31.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:31.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:31.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:31.934 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:31.934 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:31.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:31.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:31.944 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:12:31.944 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:12:31.944 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:12:31.944 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:12:31.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29029 150\n [Camera]
17-03-18 05:12:32.084 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.011254,
17-03-18 05:12:32.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:32.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:32.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:32.584 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:32.584 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:32.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:32.594 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:32.594 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:32.594 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:12:32.594 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:32.594 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:12:32.774 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29029 819
17-03-18 05:12:32.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:32.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:12:32.984 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:12:32.984 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:32.994 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:32.994 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:12:32.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:12:32.994 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:12:32.994 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:32.994 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:33.004 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:12:33.134 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:33.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:33.134 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:33.134 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:33.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:33.134 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:33.144 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:33.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:12:33.144 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:33.144 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:12:33.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:33.324 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:33.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29029 150' command took 2 ms to send, 1367 ms to get response, and 1378 ms overall
17-03-18 05:12:33.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:33.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.1320860844427. ------
17-03-18 05:12:33.334 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:33.334 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13888 mm
17-03-18 05:12:33.334 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:33.454 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:33.454 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 05:12:33.454 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:33.454 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:12:33.454 -07 000000625 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:12:33.454 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30338, sync = True, waitForSettling = False)
17-03-18 05:12:33.454 -07 000000467 INF: Z Motor: Moving to -0.138878 mm, started at -0.132086 mm, distance = -6.79 um
17-03-18 05:12:33.464 -07 000000467 INF: FPGA: Xmit ZDACW 30338\n [Z Motor]
17-03-18 05:12:33.464 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:12:33.474 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:33.474 -07 000000467 INF: FPGA: 'ZDACW 30338' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:12:33.474 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:12:33.484 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:12:33.484 -07 000000625 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:33.484 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:33.484 -07 000000625 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:33.484 -07 000000625 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:12:33.484 -07 000000480 INF: FPGA: Recv ZDACR 30338
17-03-18 05:12:33.494 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:33.494 -07 000000467 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:12:33.494 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:33.534 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:12:33.534 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:12:33.534 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:33.544 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:12:33.544 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:12:33.544 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:33.544 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:33.544 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:12:33.544 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:33.554 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:12:33.654 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:33.654 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:12:33.864 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:12:33.864 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 05:12:33.914 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:33.924 -07 000000382 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:12:33.924 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:33.924 -07 000000625 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:33.924 -07 000000625 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:12:33.924 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-18 05:12:34.874 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:34.874 -07 000000606 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:12:34.884 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:34.884 -07 000000625 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:34.914 -07 000000625 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:34.914 -07 000000625 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:34.914 -07 000000625 INF: Y Motor: Moved to 61.5630 after 1457 ms (table move)
17-03-18 05:12:34.914 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138878 mm (DAC = 30338)
17-03-18 05:12:34.914 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.914 -07 000000455 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:12:34.924 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:34.924 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.924 -07 000000606 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:12:34.934 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.934 -07 000000608 INF: FPGA: Recv ZSGSRD 30918
17-03-18 05:12:34.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.944 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.944 -07 000000569 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:12:34.954 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.954 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.954 -07 000000625 INF: FPGA: Recv ZSGSRD 30905
17-03-18 05:12:34.964 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.964 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.964 -07 000000467 INF: FPGA: Recv ZSGSRD 30913
17-03-18 05:12:34.974 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.974 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.974 -07 000000606 INF: FPGA: Recv ZSGSRD 30903
17-03-18 05:12:34.984 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.984 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.984 -07 000000626 INF: FPGA: Recv ZSGSRD 30902
17-03-18 05:12:34.994 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:34.994 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:34.994 -07 000000424 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:12:35.004 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:35.004 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:35.004 -07 000000625 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:12:35.014 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:35.014 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:35.014 -07 000000608 INF: FPGA: Recv ZPIEZORD 26678
17-03-18 05:12:35.024 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:35.024 -07 000000447 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 05:12:35.024 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30910 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30902 (-138.0 uncal um), Max = 30920 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:12:35.024 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30910, posNoise = 10, negNoise = 8
17-03-18 05:12:35.024 -07 000000447 INF: Z Motor: After move to -0.138878, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:35.024 -07 000000447 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:12:35.024 -07 000000447 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:35.074 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 05:12:35.074 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:35.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:35.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:35.074 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:35.074 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:35.074 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:35.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:35.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:35.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:35.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:35.084 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:35.094 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:12:35.094 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:12:35.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:35.144 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:35.444 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:35.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:35.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:35.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:12:35.474 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:35.484 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:35.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:12:35.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:12:35.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:35.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:35.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:12:35.584 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:35.584 -07 000000581 INF: Autofocus start
17-03-18 05:12:35.584 -07 000000581 INF: MeasureProfile start
17-03-18 05:12:35.584 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:35.594 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:35.594 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:35.594 -07 000000581 INF: MeasureProfile done
17-03-18 05:12:35.594 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:12:35.594 -07 000000581 INF: Autofocus finished
17-03-18 05:12:35.794 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:35.794 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:35.794 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138895749312966. ----------
17-03-18 05:12:35.794 -07 000000610 INF: Cycle	134	Tile	3	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:35.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28846, sync = True, waitForSettling = True)
17-03-18 05:12:35.804 -07 000000610 INF: Z Motor: Moving to -0.132049 mm, started at -0.138896 mm, distance = 6.85 um
17-03-18 05:12:35.804 -07 000000610 INF: FPGA: Xmit ZDACW 28846\n [Z Motor]
17-03-18 05:12:35.804 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:12:35.814 -07 000000610 INF: FPGA: 'ZDACW 28846' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:35.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:35.814 -07 000000479 INF: FPGA: Recv ZDACR 28846
17-03-18 05:12:35.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:35.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:35.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:35.974 -07 000000502 INF: FPGA: Recv ZSGSRD 29845
17-03-18 05:12:35.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:35.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:35.984 -07 000000447 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:12:35.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:35.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:35.994 -07 000000501 INF: FPGA: Recv ZSGSRD 29837
17-03-18 05:12:36.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.004 -07 000000467 INF: FPGA: Recv ZSGSRD 29848
17-03-18 05:12:36.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.014 -07 000000579 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:12:36.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.024 -07 000000455 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:12:36.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.034 -07 000000447 INF: FPGA: Recv ZSGSRD 29844
17-03-18 05:12:36.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.044 -07 000000608 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:12:36.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.054 -07 000000618 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:12:36.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:36.064 -07 000000569 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:12:36.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:36.074 -07 000000479 INF: FPGA: Recv ZPIEZORD 25301
17-03-18 05:12:36.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:36.084 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 05:12:36.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29844 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29837 (-131.2 uncal um), Max = 29848 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:12:36.084 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29844, posNoise = 4, negNoise = 7
17-03-18 05:12:36.084 -07 000000610 INF: Z Motor: After move to -0.132049, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:36.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:12:36.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:36.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:36.084 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:36.084 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:36.084 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:36.084 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:36.084 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:36.084 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:36.084 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:36.084 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:36.084 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:36.084 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:36.084 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:36.084 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:36.094 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:36.094 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:36.094 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:12:36.094 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:12:36.104 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:12:36.104 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:12:36.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29022 150\n [Camera]
17-03-18 05:12:36.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:36.734 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:36.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:36.744 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:36.744 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:36.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:36.744 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:36.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:36.744 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:36.744 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:12:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:36.744 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:36.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:12:36.934 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29022 819
17-03-18 05:12:37.084 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:37.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:12:37.124 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:12:37.124 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:37.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:12:37.124 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:12:37.124 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:37.124 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:37.124 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:12:37.124 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:12:37.134 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:12:37.294 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:37.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:37.294 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:37.294 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:37.294 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:12:37.294 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:37.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:37.294 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:37.294 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:37.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:12:37.444 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.988112,
17-03-18 05:12:37.484 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:12:37.484 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:37.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29022 150' command took 2 ms to send, 1373 ms to get response, and 1379 ms overall
17-03-18 05:12:37.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:37.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132047539169849. ------
17-03-18 05:12:37.484 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:37.484 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13845 mm
17-03-18 05:12:37.484 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:37.494 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:12:37.494 -07 000000606 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:12:37.494 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:37.494 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30245, sync = True, waitForSettling = False)
17-03-18 05:12:37.494 -07 000000512 INF: Z Motor: Moving to -0.138453 mm, started at -0.132048 mm, distance = -6.41 um
17-03-18 05:12:37.494 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:37.494 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:37.494 -07 000000467 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:12:37.504 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:37.504 -07 000000606 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:37.504 -07 000000606 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:37.504 -07 000000606 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:12:37.504 -07 000000512 INF: FPGA: Xmit ZDACW 30245\n [Z Motor]
17-03-18 05:12:37.504 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:12:37.514 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:37.514 -07 000000512 INF: FPGA: 'ZDACW 30245' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:12:37.524 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:37.534 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:37.534 -07 000000581 INF: FPGA: Recv ZDACR 30245
17-03-18 05:12:37.544 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:12:37.544 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:12:37.694 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:12:37.694 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:12:37.694 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:37.694 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:12:37.694 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:12:37.694 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:37.704 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:37.704 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:12:37.704 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:12:37.704 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:12:37.714 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:37.714 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:12:37.894 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:12:37.894 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:37.944 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:37.954 -07 000000579 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:12:37.954 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:37.954 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:37.954 -07 000000606 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 05:12:37.954 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:12:38.904 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:38.904 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:12:38.914 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:38.914 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:38.944 -07 000000606 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:38.944 -07 000000606 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:38.944 -07 000000606 INF: Y Motor: Moved to 62.3950 after 1449 ms (table move)
17-03-18 05:12:38.944 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138453 mm (DAC = 30245)
17-03-18 05:12:38.944 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:38.944 -07 000000501 INF: FPGA: Recv ZSGSRD 30843
17-03-18 05:12:38.954 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:38.954 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:38.954 -07 000000581 INF: FPGA: Recv ZSGSRD 30844
17-03-18 05:12:38.964 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:38.964 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:38.964 -07 000000455 INF: FPGA: Recv ZSGSRD 30847
17-03-18 05:12:38.974 -07 000000382 INF: FPGA: 'ZSGSRD' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:38.974 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:38.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30842
17-03-18 05:12:38.984 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:38.984 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:38.984 -07 000000455 INF: FPGA: Recv ZSGSRD 30832
17-03-18 05:12:38.994 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:38.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:38.994 -07 000000606 INF: FPGA: Recv ZSGSRD 30841
17-03-18 05:12:39.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:39.004 -07 000000618 INF: FPGA: Recv ZSGSRD 30842
17-03-18 05:12:39.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.014 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:39.014 -07 000000579 INF: FPGA: Recv ZSGSRD 30845
17-03-18 05:12:39.024 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.024 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:39.024 -07 000000424 INF: FPGA: Recv ZSGSRD 30848
17-03-18 05:12:39.034 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.034 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:39.034 -07 000000480 INF: FPGA: Recv ZSGSRD 30842
17-03-18 05:12:39.044 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.044 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:39.044 -07 000000581 INF: FPGA: Recv ZPIEZORD 26611
17-03-18 05:12:39.054 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.054 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -9.3 V.
17-03-18 05:12:39.054 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30843 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30842 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30832 (-137.6 uncal um), Max = 30848 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:12:39.054 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30843, posNoise = 5, negNoise = 11
17-03-18 05:12:39.054 -07 000000382 INF: Z Motor: After move to -0.138453, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:39.054 -07 000000382 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:12:39.054 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:39.104 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:12:39.104 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:39.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:39.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:39.104 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:39.104 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:39.104 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:39.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:39.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:12:39.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:39.114 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:39.114 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:39.114 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:12:39.114 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:12:39.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:39.164 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:39.464 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:39.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:39.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:39.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 05:12:39.504 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:39.504 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:39.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:12:39.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:12:39.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:39.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:12:39.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:12:39.604 -07 000000479 INF: Autofocus start
17-03-18 05:12:39.604 -07 000000479 INF: MeasureProfile start
17-03-18 05:12:39.604 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:39.614 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:39.614 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:12:39.614 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:39.614 -07 000000479 INF: MeasureProfile done
17-03-18 05:12:39.614 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:12:39.614 -07 000000479 INF: Autofocus finished
17-03-18 05:12:39.814 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:39.814 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:12:39.824 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138465327099468. ----------
17-03-18 05:12:39.824 -07 000000610 INF: Cycle	134	Tile	4	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:39.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28769, sync = True, waitForSettling = True)
17-03-18 05:12:39.824 -07 000000610 INF: Z Motor: Moving to -0.131696 mm, started at -0.138465 mm, distance = 6.77 um
17-03-18 05:12:39.824 -07 000000610 INF: FPGA: Xmit ZDACW 28769\n [Z Motor]
17-03-18 05:12:39.824 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:12:39.834 -07 000000610 INF: FPGA: 'ZDACW 28769' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:12:39.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:39.834 -07 000000569 INF: FPGA: Recv ZDACR 28769
17-03-18 05:12:39.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:39.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:39.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:39.994 -07 000000625 INF: FPGA: Recv ZSGSRD 29789
17-03-18 05:12:40.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:40.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.004 -07 000000502 INF: FPGA: Recv ZSGSRD 29786
17-03-18 05:12:40.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.014 -07 000000461 INF: FPGA: Recv ZSGSRD 29795
17-03-18 05:12:40.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.024 -07 000000618 INF: FPGA: Recv ZSGSRD 29787
17-03-18 05:12:40.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.034 -07 000000474 INF: FPGA: Recv ZSGSRD 29786
17-03-18 05:12:40.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.044 -07 000000455 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:12:40.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.054 -07 000000382 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:12:40.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29791
17-03-18 05:12:40.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.074 -07 000000579 INF: FPGA: Recv ZSGSRD 29785
17-03-18 05:12:40.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:40.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29795
17-03-18 05:12:40.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:40.094 -07 000000501 INF: FPGA: Recv ZPIEZORD 25249
17-03-18 05:12:40.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:40.104 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -10.0 V.
17-03-18 05:12:40.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29789 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29785 (-130.9 uncal um), Max = 29795 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:40.104 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29789, posNoise = 6, negNoise = 4
17-03-18 05:12:40.104 -07 000000610 INF: Z Motor: After move to -0.131696, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:40.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:12:40.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:40.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:40.104 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:40.104 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:40.104 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:40.104 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:40.104 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:40.104 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:40.104 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:40.104 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:40.104 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:40.104 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:40.114 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:40.114 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:40.114 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:40.114 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:40.124 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:12:40.124 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:12:40.124 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:12:40.124 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:12:40.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28946 150\n [Camera]
17-03-18 05:12:40.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:40.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:40.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:40.764 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:40.764 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:40.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1149253448, 0x0, 391868352) start.
17-03-18 05:12:40.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:40.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:40.764 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:40.764 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:40.764 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:12:40.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28946 819
17-03-18 05:12:41.104 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:41.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:12:41.144 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:12:41.144 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:41.144 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1149253448, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:12:41.144 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:12:41.144 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:41.154 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:41.154 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:41.154 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:12:41.164 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:12:41.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:41.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:41.314 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:41.314 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:41.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:12:41.314 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:41.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:41.314 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:41.314 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:41.314 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:12:41.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:12:41.504 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:41.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28946 150' command took 2 ms to send, 1365 ms to get response, and 1378 ms overall
17-03-18 05:12:41.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:41.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131694207502052. ------
17-03-18 05:12:41.514 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:41.514 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13818 mm
17-03-18 05:12:41.514 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:41.514 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:12:41.514 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:12:41.514 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30185, sync = True, waitForSettling = False)
17-03-18 05:12:41.634 -07 000000502 INF: Z Motor: Moving to -0.138178 mm, started at -0.131694 mm, distance = -6.48 um
17-03-18 05:12:41.634 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:41.634 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 05:12:41.634 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:41.634 -07 000000581 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:12:41.644 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:41.644 -07 000000569 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 05:12:41.644 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:41.644 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:41.644 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-18 05:12:41.654 -07 000000502 INF: FPGA: Xmit ZDACW 30185\n [Z Motor]
17-03-18 05:12:41.654 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:12:41.664 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:41.664 -07 000000502 INF: FPGA: 'ZDACW 30185' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:12:41.674 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:41.674 -07 000000579 INF: FPGA: Recv ZDACR 30185
17-03-18 05:12:41.684 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:41.684 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:12:41.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:12:41.714 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:12:41.714 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:41.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:12:41.714 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:12:41.714 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:41.724 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:41.724 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:12:41.724 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:12:41.724 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:12:41.744 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:41.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:41.844 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:41.844 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 05:12:42.034 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:12:42.034 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:42.084 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:42.094 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:12:42.094 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:42.094 -07 000000569 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:42.094 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:12:42.094 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 05:12:42.804 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.001704,
17-03-18 05:12:43.044 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:43.044 -07 000000608 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:12:43.054 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.054 -07 000000569 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:43.084 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:43.084 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:43.084 -07 000000569 INF: Y Motor: Moved to 63.2231 after 1566 ms (table move)
17-03-18 05:12:43.084 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138178 mm (DAC = 30185)
17-03-18 05:12:43.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.094 -07 000000581 INF: FPGA: Recv ZSGSRD 30807
17-03-18 05:12:43.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:43.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.094 -07 000000608 INF: FPGA: Recv ZSGSRD 30801
17-03-18 05:12:43.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:43.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.104 -07 000000424 INF: FPGA: Recv ZSGSRD 30804
17-03-18 05:12:43.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.114 -07 000000474 INF: FPGA: Recv ZSGSRD 30798
17-03-18 05:12:43.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30795
17-03-18 05:12:43.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.134 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.134 -07 000000581 INF: FPGA: Recv ZSGSRD 30800
17-03-18 05:12:43.144 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.144 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.144 -07 000000480 INF: FPGA: Recv ZSGSRD 30794
17-03-18 05:12:43.154 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.154 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.154 -07 000000455 INF: FPGA: Recv ZSGSRD 30799
17-03-18 05:12:43.164 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30801
17-03-18 05:12:43.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.174 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:43.174 -07 000000447 INF: FPGA: Recv ZSGSRD 30802
17-03-18 05:12:43.184 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.184 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:43.184 -07 000000467 INF: FPGA: Recv ZPIEZORD 26564
17-03-18 05:12:43.194 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.194 -07 000000626 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.3 V.
17-03-18 05:12:43.194 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30800 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30800 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30794 (-137.4 uncal um), Max = 30807 (-137.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:12:43.194 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30800, posNoise = 7, negNoise = 6
17-03-18 05:12:43.194 -07 000000626 INF: Z Motor: After move to -0.138178, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:43.194 -07 000000626 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 05:12:43.194 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:43.244 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1728 ms
17-03-18 05:12:43.244 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:43.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:43.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:43.244 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:43.244 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:43.244 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:43.244 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:43.244 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:43.244 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:43.254 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:43.254 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:43.254 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:12:43.254 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:12:43.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:43.314 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:43.604 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:43.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:43.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:43.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:12:43.644 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:43.644 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:43.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:12:43.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:12:43.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:43.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:43.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:12:43.744 -07 000000626 INF: Autofocus start
17-03-18 05:12:43.744 -07 000000626 INF: MeasureProfile start
17-03-18 05:12:43.744 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:43.744 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:43.754 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:43.754 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:43.754 -07 000000626 INF: MeasureProfile done
17-03-18 05:12:43.754 -07 000000626 INF: X=48  Z correction [um]=0.2069503
17-03-18 05:12:43.754 -07 000000626 INF: Autofocus finished
17-03-18 05:12:43.954 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:43.954 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:43.954 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138189085977372. ----------
17-03-18 05:12:43.954 -07 000000610 INF: Cycle	134	Tile	5	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:43.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28743, sync = True, waitForSettling = True)
17-03-18 05:12:43.964 -07 000000610 INF: Z Motor: Moving to -0.131577 mm, started at -0.138189 mm, distance = 6.61 um
17-03-18 05:12:43.964 -07 000000610 INF: FPGA: Xmit ZDACW 28743\n [Z Motor]
17-03-18 05:12:43.964 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:12:43.974 -07 000000610 INF: FPGA: 'ZDACW 28743' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:43.974 -07 000000461 INF: FPGA: Recv ZDACR 28743
17-03-18 05:12:43.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:43.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:44.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.134 -07 000000424 INF: FPGA: Recv ZSGSRD 29772
17-03-18 05:12:44.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:44.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.144 -07 000000455 INF: FPGA: Recv ZSGSRD 29773
17-03-18 05:12:44.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:12:44.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.154 -07 000000447 INF: FPGA: Recv ZSGSRD 29770
17-03-18 05:12:44.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.164 -07 000000512 INF: FPGA: Recv ZSGSRD 29768
17-03-18 05:12:44.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29775
17-03-18 05:12:44.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.184 -07 000000581 INF: FPGA: Recv ZSGSRD 29769
17-03-18 05:12:44.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.194 -07 000000626 INF: FPGA: Recv ZSGSRD 29770
17-03-18 05:12:44.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.204 -07 000000461 INF: FPGA: Recv ZSGSRD 29775
17-03-18 05:12:44.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.214 -07 000000512 INF: FPGA: Recv ZSGSRD 29773
17-03-18 05:12:44.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:44.224 -07 000000474 INF: FPGA: Recv ZSGSRD 29767
17-03-18 05:12:44.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:44.234 -07 000000569 INF: FPGA: Recv ZPIEZORD 25263
17-03-18 05:12:44.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:44.244 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -9.9 V.
17-03-18 05:12:44.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29771 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29771 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29767 (-130.8 uncal um), Max = 29775 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:44.244 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29771, posNoise = 4, negNoise = 4
17-03-18 05:12:44.244 -07 000000610 INF: Z Motor: After move to -0.131577, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:44.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:12:44.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:44.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:44.244 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:44.244 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:44.244 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:44.244 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:44.244 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:44.244 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:44.244 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:44.244 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:44.244 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:44.244 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:44.244 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:12:44.244 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:44.254 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:44.254 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:44.254 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:12:44.254 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:12:44.254 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:12:44.254 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:12:44.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28920 150\n [Camera]
17-03-18 05:12:44.464 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:44.894 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:44.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:44.894 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:44.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:44.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:44.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:44.904 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:44.904 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:12:44.904 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:44.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:12:45.094 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28920 819
17-03-18 05:12:45.234 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:45.274 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:12:45.274 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:12:45.274 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:45.284 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:45.284 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:12:45.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:12:45.284 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:12:45.284 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:45.284 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:45.294 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:12:45.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:45.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:45.444 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:45.454 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:45.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:45.454 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:45.454 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:45.454 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:12:45.464 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:45.464 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:12:45.634 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:45.634 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:45.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28920 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-18 05:12:45.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:45.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.1315785716835. ------
17-03-18 05:12:45.764 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:45.764 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13793 mm
17-03-18 05:12:45.764 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:45.774 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:12:45.774 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:12:45.774 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:45.774 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30130, sync = True, waitForSettling = False)
17-03-18 05:12:45.774 -07 000000474 INF: Z Motor: Moving to -0.137926 mm, started at -0.131579 mm, distance = -6.35 um
17-03-18 05:12:45.774 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:45.774 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:12:45.774 -07 000000606 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:12:45.784 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:45.784 -07 000000512 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:45.784 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:45.784 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:12:45.784 -07 000000474 INF: FPGA: Xmit ZDACW 30130\n [Z Motor]
17-03-18 05:12:45.784 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:12:45.794 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:45.794 -07 000000474 INF: FPGA: 'ZDACW 30130' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:12:45.804 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:45.814 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:45.814 -07 000000608 INF: FPGA: Recv ZDACR 30130
17-03-18 05:12:45.824 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:12:45.824 -07 000000474 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:12:45.854 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:12:45.854 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:12:45.854 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:45.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:12:45.854 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:12:45.854 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:45.864 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:45.864 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:45.864 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 05:12:45.864 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:12:45.994 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:45.994 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:12:46.174 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:12:46.174 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:46.224 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:46.234 -07 000000447 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:12:46.234 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:12:46.234 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:46.234 -07 000000512 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:12:46.234 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.115 mm/sec
17-03-18 05:12:46.744 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:47.184 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:47.184 -07 000000474 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:12:47.194 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:47.194 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:47.224 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:47.224 -07 000000512 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:47.224 -07 000000512 INF: Y Motor: Moved to 64.0562 after 1450 ms (table move)
17-03-18 05:12:47.224 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137926 mm (DAC = 30130)
17-03-18 05:12:47.224 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.224 -07 000000480 INF: FPGA: Recv ZSGSRD 30754
17-03-18 05:12:47.234 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:12:47.234 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.234 -07 000000626 INF: FPGA: Recv ZSGSRD 30763
17-03-18 05:12:47.244 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.244 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.244 -07 000000467 INF: FPGA: Recv ZSGSRD 30759
17-03-18 05:12:47.254 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.254 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30761
17-03-18 05:12:47.264 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.264 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.264 -07 000000569 INF: FPGA: Recv ZSGSRD 30754
17-03-18 05:12:47.274 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.274 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.274 -07 000000581 INF: FPGA: Recv ZSGSRD 30759
17-03-18 05:12:47.284 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.284 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30755
17-03-18 05:12:47.294 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.294 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.294 -07 000000480 INF: FPGA: Recv ZSGSRD 30757
17-03-18 05:12:47.304 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.304 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.304 -07 000000625 INF: FPGA: Recv ZSGSRD 30766
17-03-18 05:12:47.314 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:47.314 -07 000000502 INF: FPGA: Recv ZSGSRD 30764
17-03-18 05:12:47.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.324 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:47.324 -07 000000626 INF: FPGA: Recv ZPIEZORD 26555
17-03-18 05:12:47.334 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:47.334 -07 000000579 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -9.2 V.
17-03-18 05:12:47.334 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30759 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30759 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30754 (-137.1 uncal um), Max = 30766 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:12:47.334 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30759, posNoise = 7, negNoise = 5
17-03-18 05:12:47.334 -07 000000579 INF: Z Motor: After move to -0.137926, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:47.334 -07 000000579 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:12:47.334 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:47.384 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:12:47.384 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:47.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:47.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:47.384 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:47.384 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:47.384 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:47.384 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:47.384 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:47.384 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:47.394 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:47.394 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:47.394 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:12:47.394 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:12:47.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:47.454 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:47.754 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:47.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:47.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:47.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:12:47.794 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:47.794 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:47.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 395 ms overall
17-03-18 05:12:47.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:12:47.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:47.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:47.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:12:47.894 -07 000000569 INF: Autofocus start
17-03-18 05:12:47.894 -07 000000569 INF: MeasureProfile start
17-03-18 05:12:47.894 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:47.904 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:47.904 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:47.904 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:47.904 -07 000000569 INF: MeasureProfile done
17-03-18 05:12:47.904 -07 000000569 INF: X=48  Z correction [um]=0.2069503
17-03-18 05:12:47.904 -07 000000569 INF: Autofocus finished
17-03-18 05:12:48.104 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:48.104 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:48.104 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.13792569327956. ----------
17-03-18 05:12:48.114 -07 000000610 INF: Cycle	134	Tile	6	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:48.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28688, sync = True, waitForSettling = True)
17-03-18 05:12:48.114 -07 000000610 INF: Z Motor: Moving to -0.131325 mm, started at -0.137926 mm, distance = 6.60 um
17-03-18 05:12:48.114 -07 000000610 INF: FPGA: Xmit ZDACW 28688\n [Z Motor]
17-03-18 05:12:48.114 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:12:48.124 -07 000000610 INF: FPGA: 'ZDACW 28688' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:12:48.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:48.124 -07 000000461 INF: FPGA: Recv ZDACR 28688
17-03-18 05:12:48.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:48.164 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.023489,
17-03-18 05:12:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.284 -07 000000569 INF: FPGA: Recv ZSGSRD 29731
17-03-18 05:12:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:12:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.304 -07 000000455 INF: FPGA: Recv ZSGSRD 29729
17-03-18 05:12:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.314 -07 000000467 INF: FPGA: Recv ZSGSRD 29728
17-03-18 05:12:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.324 -07 000000502 INF: FPGA: Recv ZSGSRD 29732
17-03-18 05:12:48.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.334 -07 000000480 INF: FPGA: Recv ZSGSRD 29736
17-03-18 05:12:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:12:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.354 -07 000000626 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:12:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29729
17-03-18 05:12:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:48.374 -07 000000382 INF: FPGA: Recv ZSGSRD 29728
17-03-18 05:12:48.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:48.384 -07 000000447 INF: FPGA: Recv ZPIEZORD 25178
17-03-18 05:12:48.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:48.394 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.0 V.
17-03-18 05:12:48.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29732 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29732 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29728 (-130.5 uncal um), Max = 29736 (-130.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:48.394 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29732, posNoise = 4, negNoise = 4
17-03-18 05:12:48.394 -07 000000610 INF: Z Motor: After move to -0.131325, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:48.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:12:48.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:48.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:48.394 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:48.394 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:48.394 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:48.394 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:48.394 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:48.394 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:48.394 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:48.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:48.394 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:48.394 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:48.404 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:48.404 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:48.404 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:12:48.404 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:48.414 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:12:48.414 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:12:48.414 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:12:48.414 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:12:48.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28865 150\n [Camera]
17-03-18 05:12:48.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:12:49.044 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:49.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:49.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:49.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:49.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:49.054 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:49.054 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:49.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:12:49.054 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:49.054 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:12:49.234 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28865 819
17-03-18 05:12:49.384 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:49.444 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:12:49.444 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:12:49.444 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:49.454 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:12:49.454 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:12:49.454 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:49.454 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:49.454 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:12:49.454 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:49.464 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:12:49.594 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:49.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:49.594 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:49.604 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:49.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:49.604 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:49.604 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:49.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:12:49.604 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:49.604 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:12:49.794 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1374
17-03-18 05:12:49.794 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:49.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28865 150' command took 2 ms to send, 1374 ms to get response, and 1381 ms overall
17-03-18 05:12:49.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:49.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.131328027409972. ------
17-03-18 05:12:49.794 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:49.794 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13779 mm
17-03-18 05:12:49.794 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:49.804 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:49.804 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 05:12:49.804 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:49.804 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:12:49.804 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:12:49.804 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30100, sync = True, waitForSettling = False)
17-03-18 05:12:49.804 -07 000000626 INF: Z Motor: Moving to -0.137789 mm, started at -0.131328 mm, distance = -6.46 um
17-03-18 05:12:49.814 -07 000000626 INF: FPGA: Xmit ZDACW 30100\n [Z Motor]
17-03-18 05:12:49.814 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:12:49.824 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:49.824 -07 000000626 INF: FPGA: 'ZDACW 30100' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:12:49.824 -07 000000569 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:12:49.834 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:12:49.834 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:49.834 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:49.834 -07 000000467 INF: FPGA: Recv ZDACR 30100
17-03-18 05:12:49.834 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:49.834 -07 000000447 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:12:49.844 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:49.844 -07 000000626 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 05:12:49.844 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:49.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:12:49.994 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:12:49.994 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:49.994 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:12:49.994 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:12:49.994 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:49.994 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:50.004 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:12:50.004 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:12:50.004 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:50.004 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:12:50.004 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 05:12:50.214 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:12:50.214 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 05:12:50.264 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:50.274 -07 000000626 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:12:50.274 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:50.274 -07 000000447 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:50.274 -07 000000447 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:12:50.274 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.836 mm, average velocity = 2.190 mm/sec
17-03-18 05:12:51.224 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:51.224 -07 000000461 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:12:51.234 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:51.234 -07 000000447 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:51.264 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:51.264 -07 000000447 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:51.264 -07 000000447 INF: Y Motor: Moved to 64.8779 after 1458 ms (table move)
17-03-18 05:12:51.264 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137789 mm (DAC = 30100)
17-03-18 05:12:51.264 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.264 -07 000000467 INF: FPGA: Recv ZSGSRD 30739
17-03-18 05:12:51.274 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:51.274 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.274 -07 000000480 INF: FPGA: Recv ZSGSRD 30740
17-03-18 05:12:51.284 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.284 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.284 -07 000000618 INF: FPGA: Recv ZSGSRD 30742
17-03-18 05:12:51.294 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.294 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.294 -07 000000501 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:12:51.304 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.304 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.304 -07 000000569 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:12:51.314 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.314 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.314 -07 000000626 INF: FPGA: Recv ZSGSRD 30741
17-03-18 05:12:51.324 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.324 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.324 -07 000000606 INF: FPGA: Recv ZSGSRD 30734
17-03-18 05:12:51.334 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.334 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.334 -07 000000474 INF: FPGA: Recv ZSGSRD 30738
17-03-18 05:12:51.344 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.344 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.344 -07 000000501 INF: FPGA: Recv ZSGSRD 30740
17-03-18 05:12:51.354 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.354 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:51.354 -07 000000569 INF: FPGA: Recv ZSGSRD 30739
17-03-18 05:12:51.364 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.364 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:51.364 -07 000000618 INF: FPGA: Recv ZPIEZORD 26518
17-03-18 05:12:51.374 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:51.374 -07 000000581 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.3 V.
17-03-18 05:12:51.374 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30740 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30740 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30734 (-137.0 uncal um), Max = 30748 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:12:51.374 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30740, posNoise = 8, negNoise = 6
17-03-18 05:12:51.374 -07 000000581 INF: Z Motor: After move to -0.137789, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:51.374 -07 000000581 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms
17-03-18 05:12:51.374 -07 000000581 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:51.424 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:12:51.424 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:51.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:51.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:51.424 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:51.424 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:51.424 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:51.424 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:51.434 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:12:51.434 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:51.434 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:51.434 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:51.444 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:12:51.444 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:12:51.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:51.484 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:51.744 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:51.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:51.784 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:51.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:51.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:51.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 05:12:51.824 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:51.824 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:51.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:12:51.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:12:51.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:51.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:12:51.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:12:51.924 -07 000000581 INF: Autofocus start
17-03-18 05:12:51.924 -07 000000581 INF: MeasureProfile start
17-03-18 05:12:51.924 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:51.924 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:51.934 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:51.934 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:51.934 -07 000000581 INF: MeasureProfile done
17-03-18 05:12:51.934 -07 000000581 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 05:12:51.934 -07 000000581 INF: Autofocus finished
17-03-18 05:12:52.134 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:52.134 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:52.134 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137803633248867. ----------
17-03-18 05:12:52.134 -07 000000610 INF: Cycle	134	Tile	7	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:52.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28527, sync = True, waitForSettling = True)
17-03-18 05:12:52.144 -07 000000610 INF: Z Motor: Moving to -0.130588 mm, started at -0.137804 mm, distance = 7.22 um
17-03-18 05:12:52.144 -07 000000610 INF: FPGA: Xmit ZDACW 28527\n [Z Motor]
17-03-18 05:12:52.144 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:12:52.154 -07 000000610 INF: FPGA: 'ZDACW 28527' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:52.154 -07 000000606 INF: FPGA: Recv ZDACR 28527
17-03-18 05:12:52.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:52.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.314 -07 000000382 INF: FPGA: Recv ZSGSRD 29609
17-03-18 05:12:52.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:52.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29617
17-03-18 05:12:52.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 05:12:52.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.334 -07 000000512 INF: FPGA: Recv ZSGSRD 29627
17-03-18 05:12:52.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:52.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.344 -07 000000474 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:12:52.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.354 -07 000000501 INF: FPGA: Recv ZSGSRD 29615
17-03-18 05:12:52.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.364 -07 000000467 INF: FPGA: Recv ZSGSRD 29613
17-03-18 05:12:52.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.374 -07 000000455 INF: FPGA: Recv ZSGSRD 29615
17-03-18 05:12:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.384 -07 000000447 INF: FPGA: Recv ZSGSRD 29621
17-03-18 05:12:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.394 -07 000000382 INF: FPGA: Recv ZSGSRD 29615
17-03-18 05:12:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:52.404 -07 000000424 INF: FPGA: Recv ZSGSRD 29615
17-03-18 05:12:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:52.414 -07 000000608 INF: FPGA: Recv ZPIEZORD 25059
17-03-18 05:12:52.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:52.424 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -10.0 V.
17-03-18 05:12:52.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29615 (-129.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29609 (-129.8 uncal um), Max = 29627 (-129.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:12:52.424 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 11, negNoise = 7
17-03-18 05:12:52.424 -07 000000610 INF: Z Motor: After move to -0.130588, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:52.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:12:52.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:52.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:52.424 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:52.424 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:52.424 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:52.424 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:52.424 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:52.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:52.424 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:52.424 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:52.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:52.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:52.434 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:52.434 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:52.434 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:52.434 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:52.434 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:12:52.434 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:12:52.444 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:12:52.444 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:12:52.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28703 150\n [Camera]
17-03-18 05:12:52.644 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:53.074 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:53.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:53.074 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:53.074 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:53.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:12:53.084 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:53.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:53.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:53.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:53.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:12:53.274 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28703 819
17-03-18 05:12:53.424 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:53.464 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:12:53.464 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:12:53.464 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:53.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:12:53.464 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:12:53.464 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:53.464 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:53.464 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:53.464 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:12:53.474 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:12:53.524 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.986717,
17-03-18 05:12:53.634 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:53.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:53.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:53.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:53.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:12:53.634 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:53.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:53.634 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:53.634 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:53.634 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:12:53.824 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:12:53.824 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:53.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28703 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-18 05:12:53.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:53.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130582818801528. ------
17-03-18 05:12:53.824 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:53.824 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13727 mm
17-03-18 05:12:53.824 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:53.834 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:12:53.834 -07 000000461 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:12:53.834 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:53.834 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:53.834 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:12:53.834 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29987, sync = True, waitForSettling = False)
17-03-18 05:12:53.834 -07 000000625 INF: Z Motor: Moving to -0.137272 mm, started at -0.130583 mm, distance = -6.69 um
17-03-18 05:12:53.834 -07 000000579 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:12:53.844 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:53.844 -07 000000461 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:53.844 -07 000000625 INF: FPGA: Xmit ZDACW 29987\n [Z Motor]
17-03-18 05:12:53.844 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:12:53.964 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:53.974 -07 000000625 INF: FPGA: 'ZDACW 29987' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 05:12:53.974 -07 000000461 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:53.974 -07 000000461 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:12:53.984 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:53.984 -07 000000474 INF: FPGA: Recv ZDACR 29987
17-03-18 05:12:53.994 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:53.994 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:53.994 -07 000000625 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-18 05:12:54.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:12:54.034 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:12:54.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:54.044 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:12:54.044 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:12:54.044 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:54.044 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:12:54.044 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:12:54.044 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:12:54.054 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:12:54.174 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:54.174 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 341 ms overall
17-03-18 05:12:54.364 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:12:54.364 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:12:54.414 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:54.424 -07 000000569 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:12:54.424 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:54.424 -07 000000461 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:54.424 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:12:54.424 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:12:55.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:55.374 -07 000000455 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:12:55.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:55.384 -07 000000461 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:55.414 -07 000000461 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:55.414 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:12:55.414 -07 000000461 INF: Y Motor: Moved to 65.7134 after 1587 ms (table move)
17-03-18 05:12:55.424 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137272 mm (DAC = 29987)
17-03-18 05:12:55.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30655
17-03-18 05:12:55.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:55.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.434 -07 000000608 INF: FPGA: Recv ZSGSRD 30656
17-03-18 05:12:55.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.444 -07 000000502 INF: FPGA: Recv ZSGSRD 30655
17-03-18 05:12:55.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.454 -07 000000447 INF: FPGA: Recv ZSGSRD 30655
17-03-18 05:12:55.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.464 -07 000000461 INF: FPGA: Recv ZSGSRD 30654
17-03-18 05:12:55.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.474 -07 000000512 INF: FPGA: Recv ZSGSRD 30656
17-03-18 05:12:55.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.484 -07 000000625 INF: FPGA: Recv ZSGSRD 30665
17-03-18 05:12:55.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.494 -07 000000606 INF: FPGA: Recv ZSGSRD 30656
17-03-18 05:12:55.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.504 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.504 -07 000000480 INF: FPGA: Recv ZSGSRD 30659
17-03-18 05:12:55.514 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.514 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:55.514 -07 000000608 INF: FPGA: Recv ZSGSRD 30655
17-03-18 05:12:55.524 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.524 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:55.524 -07 000000479 INF: FPGA: Recv ZPIEZORD 26415
17-03-18 05:12:55.534 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:55.534 -07 000000382 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.3 V.
17-03-18 05:12:55.534 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30657 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30665 (-136.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:12:55.534 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30657, posNoise = 8, negNoise = 3
17-03-18 05:12:55.534 -07 000000382 INF: Z Motor: After move to -0.137272, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:55.534 -07 000000382 INF: Z Motor: Settle wait time = 1590 ms, measure time = 109 ms (allowed 150 ms), total time = 1699 ms
17-03-18 05:12:55.534 -07 000000382 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:55.584 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1752 ms
17-03-18 05:12:55.584 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:55.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:55.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:55.584 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:55.584 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:55.584 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:55.584 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:55.584 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:55.584 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:55.594 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:55.594 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:55.604 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:12:55.604 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:12:55.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:55.654 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:12:55.954 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:12:55.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:12:55.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:12:55.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:12:55.984 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:12:55.994 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:12:55.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:12:56.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:12:56.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:56.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:12:56.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:12:56.094 -07 000000461 INF: Autofocus start
17-03-18 05:12:56.094 -07 000000461 INF: MeasureProfile start
17-03-18 05:12:56.094 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:56.094 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:56.104 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:12:56.104 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:12:56.104 -07 000000461 INF: MeasureProfile done
17-03-18 05:12:56.104 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:12:56.104 -07 000000461 INF: Autofocus finished
17-03-18 05:12:56.304 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:12:56.304 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:12:56.304 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137270423641101. ----------
17-03-18 05:12:56.304 -07 000000610 INF: Cycle	134	Tile	8	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:12:56.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28494, sync = True, waitForSettling = True)
17-03-18 05:12:56.314 -07 000000610 INF: Z Motor: Moving to -0.130437 mm, started at -0.137270 mm, distance = 6.83 um
17-03-18 05:12:56.314 -07 000000610 INF: FPGA: Xmit ZDACW 28494\n [Z Motor]
17-03-18 05:12:56.314 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:12:56.324 -07 000000610 INF: FPGA: 'ZDACW 28494' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:56.324 -07 000000480 INF: FPGA: Recv ZDACR 28494
17-03-18 05:12:56.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:12:56.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29594
17-03-18 05:12:56.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:56.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.494 -07 000000626 INF: FPGA: Recv ZSGSRD 29589
17-03-18 05:12:56.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.504 -07 000000424 INF: FPGA: Recv ZSGSRD 29593
17-03-18 05:12:56.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.514 -07 000000579 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:12:56.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.524 -07 000000502 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:12:56.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.534 -07 000000625 INF: FPGA: Recv ZSGSRD 29596
17-03-18 05:12:56.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.544 -07 000000581 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:12:56.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.554 -07 000000455 INF: FPGA: Recv ZSGSRD 29594
17-03-18 05:12:56.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.564 -07 000000467 INF: FPGA: Recv ZSGSRD 29589
17-03-18 05:12:56.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:56.574 -07 000000474 INF: FPGA: Recv ZSGSRD 29600
17-03-18 05:12:56.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:56.584 -07 000000512 INF: FPGA: Recv ZPIEZORD 25037
17-03-18 05:12:56.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:56.594 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 05:12:56.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29593 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29592 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29589 (-129.6 uncal um), Max = 29600 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:12:56.594 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29593, posNoise = 7, negNoise = 4
17-03-18 05:12:56.594 -07 000000610 INF: Z Motor: After move to -0.130437, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:56.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:12:56.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:56.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:56.594 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:56.594 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:12:56.594 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:12:56.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:12:56.594 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:56.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:56.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:12:56.594 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:12:56.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:12:56.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:12:56.604 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:12:56.604 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:12:56.604 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:12:56.604 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:12:56.614 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:12:56.614 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:12:56.614 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:12:56.614 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:12:56.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28671 150\n [Camera]
17-03-18 05:12:56.744 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:12:56.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:12:56.814 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:12:57.254 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:12:57.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:12:57.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:57.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:12:57.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:12:57.254 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:57.254 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:57.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:12:57.264 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:57.264 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:12:57.444 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28671 819
17-03-18 05:12:57.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:12:57.634 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 05:12:57.634 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 05:12:57.634 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:57.634 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:12:57.634 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:12:57.634 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:57.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:57.634 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:12:57.634 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:12:57.644 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:12:57.804 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:12:57.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:12:57.804 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:12:57.804 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:12:57.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:12:57.804 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:12:57.814 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:12:57.814 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:12:57.814 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:12:57.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:12:57.994 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:12:57.994 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:12:57.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28671 150' command took 2 ms to send, 1367 ms to get response, and 1377 ms overall
17-03-18 05:12:58.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:12:58.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130435061922267. ------
17-03-18 05:12:58.114 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:12:58.114 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13680 mm
17-03-18 05:12:58.124 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:12:58.124 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:12:58.124 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:12:58.124 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29884, sync = True, waitForSettling = False)
17-03-18 05:12:58.124 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:12:58.124 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:12:58.124 -07 000000579 INF: Z Motor: Moving to -0.136800 mm, started at -0.130435 mm, distance = -6.37 um
17-03-18 05:12:58.134 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:12:58.144 -07 000000579 INF: FPGA: Xmit ZDACW 29884\n [Z Motor]
17-03-18 05:12:58.144 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:12:58.154 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:58.154 -07 000000579 INF: FPGA: 'ZDACW 29884' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:12:58.154 -07 000000581 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:12:58.164 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 05:12:58.164 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:12:58.164 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:58.164 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:12:58.164 -07 000000625 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:12:58.164 -07 000000467 INF: FPGA: Recv ZDACR 29884
17-03-18 05:12:58.174 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:12:58.174 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:12:58.174 -07 000000579 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:12:58.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:12:58.204 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:12:58.204 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:58.204 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:12:58.204 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:12:58.204 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:12:58.204 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:12:58.214 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:12:58.214 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:12:58.214 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:12:58.334 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:12:58.334 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 05:12:58.544 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:12:58.544 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:12:58.604 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:58.604 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:12:58.614 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:58.614 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:58.614 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:12:58.614 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-18 05:12:58.884 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.008536,
17-03-18 05:12:59.564 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:12:59.564 -07 000000479 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:12:59.574 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:12:59.574 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:12:59.604 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:12:59.604 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:12:59.604 -07 000000625 INF: Y Motor: Moved to 66.5386 after 1480 ms (table move)
17-03-18 05:12:59.604 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136800 mm (DAC = 29884)
17-03-18 05:12:59.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.614 -07 000000606 INF: FPGA: Recv ZSGSRD 30584
17-03-18 05:12:59.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:12:59.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.614 -07 000000467 INF: FPGA: Recv ZSGSRD 30582
17-03-18 05:12:59.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:12:59.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.624 -07 000000512 INF: FPGA: Recv ZSGSRD 30585
17-03-18 05:12:59.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.634 -07 000000501 INF: FPGA: Recv ZSGSRD 30576
17-03-18 05:12:59.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.644 -07 000000455 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:12:59.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.654 -07 000000626 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:12:59.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.664 -07 000000447 INF: FPGA: Recv ZSGSRD 30586
17-03-18 05:12:59.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.674 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.674 -07 000000467 INF: FPGA: Recv ZSGSRD 30583
17-03-18 05:12:59.684 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.684 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.684 -07 000000382 INF: FPGA: Recv ZSGSRD 30588
17-03-18 05:12:59.694 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.694 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:12:59.694 -07 000000455 INF: FPGA: Recv ZSGSRD 30584
17-03-18 05:12:59.704 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.704 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:12:59.704 -07 000000479 INF: FPGA: Recv ZPIEZORD 26367
17-03-18 05:12:59.714 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:12:59.714 -07 000000569 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.3 V.
17-03-18 05:12:59.714 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30584 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30584 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30576 (-136.0 uncal um), Max = 30588 (-136.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:12:59.714 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30584, posNoise = 4, negNoise = 8
17-03-18 05:12:59.714 -07 000000569 INF: Z Motor: After move to -0.136800, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:12:59.714 -07 000000569 INF: Z Motor: Settle wait time = 1485 ms, measure time = 102 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:12:59.714 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:12:59.764 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 05:12:59.764 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:12:59.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:12:59.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:12:59.764 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:12:59.764 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:12:59.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:12:59.764 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:12:59.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:12:59.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:12:59.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:12:59.774 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:12:59.774 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:12:59.774 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:12:59.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:12:59.824 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:00.124 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:00.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:00.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:00.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:00.164 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:00.164 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:00.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:13:00.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:13:00.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:00.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:13:00.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:13:00.264 -07 000000579 INF: Autofocus start
17-03-18 05:13:00.264 -07 000000579 INF: MeasureProfile start
17-03-18 05:13:00.264 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:00.264 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:00.274 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:00.274 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:00.274 -07 000000579 INF: MeasureProfile done
17-03-18 05:13:00.274 -07 000000579 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:13:00.274 -07 000000579 INF: Autofocus finished
17-03-18 05:13:00.474 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:00.474 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:00.474 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136801456154752. ----------
17-03-18 05:13:00.474 -07 000000610 INF: Cycle	134	Tile	9	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:00.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28408, sync = True, waitForSettling = True)
17-03-18 05:13:00.484 -07 000000610 INF: Z Motor: Moving to -0.130043 mm, started at -0.136801 mm, distance = 6.76 um
17-03-18 05:13:00.484 -07 000000610 INF: FPGA: Xmit ZDACW 28408\n [Z Motor]
17-03-18 05:13:00.484 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:13:00.494 -07 000000610 INF: FPGA: 'ZDACW 28408' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:13:00.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:00.494 -07 000000502 INF: FPGA: Recv ZDACR 28408
17-03-18 05:13:00.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:00.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:13:00.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:00.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.664 -07 000000581 INF: FPGA: Recv ZSGSRD 29537
17-03-18 05:13:00.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.674 -07 000000382 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:13:00.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29529
17-03-18 05:13:00.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.694 -07 000000455 INF: FPGA: Recv ZSGSRD 29536
17-03-18 05:13:00.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.704 -07 000000606 INF: FPGA: Recv ZSGSRD 29534
17-03-18 05:13:00.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.714 -07 000000474 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:13:00.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.724 -07 000000424 INF: FPGA: Recv ZSGSRD 29537
17-03-18 05:13:00.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.734 -07 000000608 INF: FPGA: Recv ZSGSRD 29536
17-03-18 05:13:00.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:00.744 -07 000000502 INF: FPGA: Recv ZSGSRD 29534
17-03-18 05:13:00.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:00.754 -07 000000626 INF: FPGA: Recv ZPIEZORD 24993
17-03-18 05:13:00.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:00.764 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -10.0 V.
17-03-18 05:13:00.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29533 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29534 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29524 (-129.2 uncal um), Max = 29537 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:13:00.764 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29533, posNoise = 4, negNoise = 9
17-03-18 05:13:00.764 -07 000000610 INF: Z Motor: After move to -0.130043, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:00.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:13:00.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:00.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:00.764 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:00.764 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:00.764 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:00.764 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:00.764 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:00.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:00.764 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:00.764 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:00.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:00.764 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:00.774 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:13:00.774 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:00.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:00.774 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:00.784 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:13:00.784 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:13:00.784 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:13:00.784 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:00.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28585 150\n [Camera]
17-03-18 05:13:00.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:01.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:13:01.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:13:01.424 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:01.424 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:13:01.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:13:01.424 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:01.424 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:01.424 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:01.424 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:01.424 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:13:01.614 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28585 819
17-03-18 05:13:01.744 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:01.764 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:01.814 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:13:01.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:13:01.814 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:13:01.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:01.824 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:13:01.824 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:01.824 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:01.824 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:13:01.824 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:01.834 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:13:01.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:01.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:01.974 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:01.974 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:01.974 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:13:01.974 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:01.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:01.974 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:01.974 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:01.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:13:02.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:02.164 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:02.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28585 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-18 05:13:02.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:02.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130049609193761. ------
17-03-18 05:13:02.164 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13678 mm
17-03-18 05:13:02.164 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:02.164 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:02.174 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:13:02.174 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:13:02.174 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:02.174 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29881, sync = True, waitForSettling = False)
17-03-18 05:13:02.174 -07 000000512 INF: Z Motor: Moving to -0.136786 mm, started at -0.130050 mm, distance = -6.74 um
17-03-18 05:13:02.174 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:02.174 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:13:02.174 -07 000000479 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:13:02.184 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:02.184 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:13:02.184 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:02.184 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:02.184 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:13:02.194 -07 000000512 INF: FPGA: Xmit ZDACW 29881\n [Z Motor]
17-03-18 05:13:02.194 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:13:02.204 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:02.204 -07 000000512 INF: FPGA: 'ZDACW 29881' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:13:02.214 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:02.214 -07 000000455 INF: FPGA: Recv ZDACR 29881
17-03-18 05:13:02.224 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:13:02.224 -07 000000512 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:13:02.374 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:13:02.374 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:13:02.374 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:02.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:13:02.374 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:13:02.374 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:02.384 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:02.384 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:13:02.384 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:13:02.384 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:02.384 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 05:13:02.394 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:13:02.574 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:13:02.574 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:13:02.624 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:02.634 -07 000000474 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:13:02.634 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:13:02.634 -07 000000424 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:02.634 -07 000000424 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:13:02.634 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:13:03.584 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:03.584 -07 000000502 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:13:03.594 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:03.594 -07 000000424 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:03.624 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:03.624 -07 000000424 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:03.624 -07 000000424 INF: Y Motor: Moved to 67.3711 after 1451 ms (table move)
17-03-18 05:13:03.624 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136786 mm (DAC = 29881)
17-03-18 05:13:03.624 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.624 -07 000000608 INF: FPGA: Recv ZSGSRD 30586
17-03-18 05:13:03.634 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:13:03.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.634 -07 000000502 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:13:03.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.644 -07 000000461 INF: FPGA: Recv ZSGSRD 30581
17-03-18 05:13:03.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.654 -07 000000474 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:13:03.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.664 -07 000000479 INF: FPGA: Recv ZSGSRD 30576
17-03-18 05:13:03.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.674 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.674 -07 000000467 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:13:03.684 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.684 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.684 -07 000000579 INF: FPGA: Recv ZSGSRD 30587
17-03-18 05:13:03.694 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.694 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.694 -07 000000480 INF: FPGA: Recv ZSGSRD 30580
17-03-18 05:13:03.704 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.704 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.704 -07 000000382 INF: FPGA: Recv ZSGSRD 30589
17-03-18 05:13:03.714 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.714 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:03.714 -07 000000581 INF: FPGA: Recv ZSGSRD 30585
17-03-18 05:13:03.724 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.724 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:03.724 -07 000000467 INF: FPGA: Recv ZPIEZORD 26379
17-03-18 05:13:03.734 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:03.734 -07 000000501 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.2 V.
17-03-18 05:13:03.734 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30583 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30576 (-136.0 uncal um), Max = 30589 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:13:03.734 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 6, negNoise = 7
17-03-18 05:13:03.734 -07 000000501 INF: Z Motor: After move to -0.136786, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:03.734 -07 000000501 INF: Z Motor: Settle wait time = 1453 ms, measure time = 105 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:13:03.734 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:03.784 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:13:03.784 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:03.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:03.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:03.784 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:03.784 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:03.784 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:03.784 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:03.784 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:03.784 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:03.794 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:03.794 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:03.804 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:13:03.804 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:13:03.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:03.864 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:04.164 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:04.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:04.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:04.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 05:13:04.204 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:04.204 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:04.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 399 ms overall
17-03-18 05:13:04.244 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.000345,
17-03-18 05:13:04.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:13:04.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:04.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:13:04.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:13:04.304 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:04.304 -07 000000447 INF: Autofocus start
17-03-18 05:13:04.304 -07 000000447 INF: MeasureProfile start
17-03-18 05:13:04.304 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:04.314 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:04.314 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:04.314 -07 000000447 INF: MeasureProfile done
17-03-18 05:13:04.314 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:13:04.314 -07 000000447 INF: Autofocus finished
17-03-18 05:13:04.514 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:04.514 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:04.514 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13679503194261. ----------
17-03-18 05:13:04.514 -07 000000610 INF: Cycle	134	Tile	10	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:04.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = True)
17-03-18 05:13:04.524 -07 000000610 INF: Z Motor: Moving to -0.130030 mm, started at -0.136795 mm, distance = 6.77 um
17-03-18 05:13:04.524 -07 000000610 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-18 05:13:04.524 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:13:04.534 -07 000000610 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:04.534 -07 000000625 INF: FPGA: Recv ZDACR 28405
17-03-18 05:13:04.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:04.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.694 -07 000000581 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:13:04.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:04.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.704 -07 000000480 INF: FPGA: Recv ZSGSRD 29535
17-03-18 05:13:04.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.714 -07 000000479 INF: FPGA: Recv ZSGSRD 29526
17-03-18 05:13:04.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.724 -07 000000467 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:13:04.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.734 -07 000000625 INF: FPGA: Recv ZSGSRD 29529
17-03-18 05:13:04.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.744 -07 000000581 INF: FPGA: Recv ZSGSRD 29535
17-03-18 05:13:04.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.754 -07 000000501 INF: FPGA: Recv ZSGSRD 29529
17-03-18 05:13:04.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.764 -07 000000606 INF: FPGA: Recv ZSGSRD 29524
17-03-18 05:13:04.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.774 -07 000000382 INF: FPGA: Recv ZSGSRD 29534
17-03-18 05:13:04.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:04.784 -07 000000447 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:13:04.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:04.794 -07 000000455 INF: FPGA: Recv ZPIEZORD 25004
17-03-18 05:13:04.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:04.804 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 05:13:04.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29531 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29524 (-129.2 uncal um), Max = 29535 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:13:04.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 4, negNoise = 7
17-03-18 05:13:04.804 -07 000000610 INF: Z Motor: After move to -0.130030, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:04.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:13:04.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:04.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:04.804 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:04.804 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:04.804 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:04.804 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:04.804 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:04.804 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:04.804 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:04.804 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:04.804 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:13:04.804 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:04.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:13:04.814 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:04.814 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:04.814 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:04.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:13:04.824 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:04.824 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:13:04.824 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:04.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28581 150\n [Camera]
17-03-18 05:13:05.024 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:05.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:05.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:05.454 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:05.454 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:05.454 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1149253448, 0x0, 391868352) start.
17-03-18 05:13:05.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:05.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:05.464 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:05.464 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:05.464 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:13:05.654 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28581 819
17-03-18 05:13:05.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:05.834 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:13:05.834 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:13:05.834 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:05.834 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1149253448, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:13:05.834 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:13:05.834 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:05.834 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:05.844 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:05.844 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:13:05.844 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:13:06.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:06.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:06.014 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:06.014 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:06.014 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:06.014 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:13:06.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:06.014 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:06.014 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:06.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:13:06.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:06.204 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:06.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28581 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-18 05:13:06.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:06.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130036760769478. ------
17-03-18 05:13:06.204 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13650 mm
17-03-18 05:13:06.204 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:06.204 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:06.204 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29819, sync = True, waitForSettling = False)
17-03-18 05:13:06.204 -07 000000501 INF: Z Motor: Moving to -0.136503 mm, started at -0.130037 mm, distance = -6.47 um
17-03-18 05:13:06.204 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:06.214 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:13:06.214 -07 000000501 INF: FPGA: Xmit ZDACW 29819\n [Z Motor]
17-03-18 05:13:06.214 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:13:06.214 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:13:06.214 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:13:06.224 -07 000000501 INF: FPGA: 'ZDACW 29819' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:06.224 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:06.224 -07 000000455 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:13:06.234 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:06.234 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:13:06.234 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:06.344 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:06.354 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:06.354 -07 000000626 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:13:06.354 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:06.354 -07 000000569 INF: FPGA: Recv ZDACR 29819
17-03-18 05:13:06.354 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 131 ms overall
17-03-18 05:13:06.354 -07 000000501 INF: Z Motor: MoveAbsStepped took 142 ms (did NOT wait for settling yet))
17-03-18 05:13:06.404 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:13:06.404 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:13:06.404 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:06.404 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:13:06.404 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:13:06.404 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:06.404 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:06.414 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:13:06.414 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:13:06.414 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:13:06.434 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:06.434 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 84 ms to get response, and 222 ms overall
17-03-18 05:13:06.724 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:13:06.724 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 05:13:06.744 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:06.784 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:06.784 -07 000000579 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:13:06.794 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:06.794 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:06.794 -07 000000626 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 05:13:06.794 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.842 mm, average velocity = 2.226 mm/sec
17-03-18 05:13:07.744 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:07.744 -07 000000455 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:13:07.754 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.754 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:07.784 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:07.784 -07 000000626 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:07.784 -07 000000626 INF: Y Motor: Moved to 68.2046 after 1578 ms (table move)
17-03-18 05:13:07.794 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136503 mm (DAC = 29819)
17-03-18 05:13:07.794 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30532
17-03-18 05:13:07.804 -07 000000625 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:13:07.804 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.804 -07 000000467 INF: FPGA: Recv ZSGSRD 30534
17-03-18 05:13:07.814 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.814 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.814 -07 000000447 INF: FPGA: Recv ZSGSRD 30537
17-03-18 05:13:07.824 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.824 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.824 -07 000000512 INF: FPGA: Recv ZSGSRD 30542
17-03-18 05:13:07.834 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.834 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.834 -07 000000579 INF: FPGA: Recv ZSGSRD 30542
17-03-18 05:13:07.844 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.844 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.844 -07 000000626 INF: FPGA: Recv ZSGSRD 30539
17-03-18 05:13:07.854 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.854 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.854 -07 000000424 INF: FPGA: Recv ZSGSRD 30538
17-03-18 05:13:07.864 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.864 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.864 -07 000000382 INF: FPGA: Recv ZSGSRD 30531
17-03-18 05:13:07.874 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.874 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.874 -07 000000606 INF: FPGA: Recv ZSGSRD 30532
17-03-18 05:13:07.884 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.884 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:07.884 -07 000000618 INF: FPGA: Recv ZSGSRD 30533
17-03-18 05:13:07.894 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.894 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:07.894 -07 000000479 INF: FPGA: Recv ZPIEZORD 26333
17-03-18 05:13:07.904 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:07.904 -07 000000625 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.2 V.
17-03-18 05:13:07.904 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30536 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30536 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30531 (-135.7 uncal um), Max = 30542 (-135.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:13:07.904 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30536, posNoise = 6, negNoise = 5
17-03-18 05:13:07.904 -07 000000625 INF: Z Motor: After move to -0.136503, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:07.904 -07 000000625 INF: Z Motor: Settle wait time = 1582 ms, measure time = 109 ms (allowed 150 ms), total time = 1691 ms
17-03-18 05:13:07.904 -07 000000625 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:07.954 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1743 ms
17-03-18 05:13:07.954 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:07.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:07.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:07.954 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:07.954 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:07.954 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:07.954 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:07.954 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:13:07.954 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:07.964 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:07.964 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:07.964 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:13:07.964 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:13:07.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:08.014 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:13:08.314 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:13:08.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:13:08.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:08.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:08.354 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:08.354 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:08.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:13:08.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:13:08.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:08.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:13:08.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:13:08.454 -07 000000512 INF: Autofocus start
17-03-18 05:13:08.454 -07 000000512 INF: MeasureProfile start
17-03-18 05:13:08.454 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:08.454 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:08.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:13:08.464 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:08.464 -07 000000512 INF: MeasureProfile done
17-03-18 05:13:08.464 -07 000000512 INF: X=-6  Z correction [um]=-0.03260989
17-03-18 05:13:08.464 -07 000000512 INF: Autofocus finished
17-03-18 05:13:08.664 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:08.664 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:08.664 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136493093971948. ----------
17-03-18 05:13:08.664 -07 000000610 INF: Cycle	134	Tile	11	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:08.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28324, sync = True, waitForSettling = True)
17-03-18 05:13:08.674 -07 000000610 INF: Z Motor: Moving to -0.129659 mm, started at -0.136493 mm, distance = 6.83 um
17-03-18 05:13:08.674 -07 000000610 INF: FPGA: Xmit ZDACW 28324\n [Z Motor]
17-03-18 05:13:08.674 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:13:08.684 -07 000000610 INF: FPGA: 'ZDACW 28324' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:13:08.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:08.684 -07 000000579 INF: FPGA: Recv ZDACR 28324
17-03-18 05:13:08.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:08.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.844 -07 000000569 INF: FPGA: Recv ZSGSRD 29468
17-03-18 05:13:08.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:08.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29473
17-03-18 05:13:08.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:13:08.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29476
17-03-18 05:13:08.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.884 -07 000000501 INF: FPGA: Recv ZSGSRD 29469
17-03-18 05:13:08.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.894 -07 000000382 INF: FPGA: Recv ZSGSRD 29472
17-03-18 05:13:08.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.904 -07 000000501 INF: FPGA: Recv ZSGSRD 29474
17-03-18 05:13:08.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.914 -07 000000382 INF: FPGA: Recv ZSGSRD 29469
17-03-18 05:13:08.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.924 -07 000000501 INF: FPGA: Recv ZSGSRD 29470
17-03-18 05:13:08.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29474
17-03-18 05:13:08.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:08.944 -07 000000618 INF: FPGA: Recv ZSGSRD 29474
17-03-18 05:13:08.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:08.954 -07 000000455 INF: FPGA: Recv ZPIEZORD 24927
17-03-18 05:13:08.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:08.964 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.0 V.
17-03-18 05:13:08.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29472 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29476 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:08.964 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29472, posNoise = 4, negNoise = 4
17-03-18 05:13:08.964 -07 000000610 INF: Z Motor: After move to -0.129659, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:08.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:13:08.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:08.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:08.964 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:08.964 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:08.964 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:08.964 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:08.964 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:08.964 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:08.964 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:08.964 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:08.964 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:08.964 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:08.974 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:08.974 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:08.974 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:13:08.974 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:08.974 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:13:08.974 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:13:08.984 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:13:08.984 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:13:08.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28501 150\n [Camera]
17-03-18 05:13:09.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:09.604 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.008536,
17-03-18 05:13:09.614 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:09.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:09.624 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:09.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:09.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:09.624 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:09.624 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:09.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:09.634 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:09.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:13:09.804 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28501 819
17-03-18 05:13:09.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:10.024 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:13:10.024 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:13:10.024 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:10.024 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:10.024 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:13:10.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:13:10.024 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:13:10.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:10.034 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:10.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:13:10.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:10.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:10.174 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:10.174 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:10.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:10.174 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:10.174 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:10.174 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:13:10.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:10.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:13:10.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:10.364 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:10.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28501 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-18 05:13:10.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:10.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129657732253114. ------
17-03-18 05:13:10.494 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:10.494 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13633 mm
17-03-18 05:13:10.494 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:10.494 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:10.494 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:13:10.494 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:13:10.494 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29781, sync = True, waitForSettling = False)
17-03-18 05:13:10.494 -07 000000461 INF: Z Motor: Moving to -0.136329 mm, started at -0.129658 mm, distance = -6.67 um
17-03-18 05:13:10.504 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:10.504 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:10.504 -07 000000480 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:13:10.514 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:13:10.514 -07 000000569 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:10.514 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:10.514 -07 000000569 INF: Y Motor: Moving 1341 steps-16
17-03-18 05:13:10.514 -07 000000461 INF: FPGA: Xmit ZDACW 29781\n [Z Motor]
17-03-18 05:13:10.514 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:13:10.524 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:10.524 -07 000000461 INF: FPGA: 'ZDACW 29781' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:13:10.534 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:10.544 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:10.544 -07 000000626 INF: FPGA: Recv ZDACR 29781
17-03-18 05:13:10.554 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:13:10.554 -07 000000461 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:13:10.574 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:13:10.574 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:13:10.574 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:10.574 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:13:10.574 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:13:10.574 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:10.574 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:10.584 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:10.584 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:13:10.584 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:13:10.724 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:10.724 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 05:13:10.904 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:13:10.904 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 05:13:10.954 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:10.954 -07 000000424 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:13:10.964 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:13:10.964 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:10.964 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:13:10.964 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 05:13:11.744 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:11.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:11.914 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:11.914 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:13:11.924 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:11.924 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:11.954 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:11.954 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:11.954 -07 000000569 INF: Y Motor: Moved to 69.0264 after 1456 ms (table move)
17-03-18 05:13:11.954 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136329 mm (DAC = 29781)
17-03-18 05:13:11.954 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:11.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:13:11.964 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:11.964 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:11.964 -07 000000455 INF: FPGA: Recv ZSGSRD 30516
17-03-18 05:13:11.974 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:11.974 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:11.974 -07 000000626 INF: FPGA: Recv ZSGSRD 30504
17-03-18 05:13:11.984 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:11.984 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:11.984 -07 000000424 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:13:11.994 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:11.994 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:11.994 -07 000000569 INF: FPGA: Recv ZSGSRD 30504
17-03-18 05:13:12.004 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.004 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:12.004 -07 000000581 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:13:12.014 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:12.014 -07 000000606 INF: FPGA: Recv ZSGSRD 30510
17-03-18 05:13:12.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:12.024 -07 000000608 INF: FPGA: Recv ZSGSRD 30511
17-03-18 05:13:12.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.034 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:12.034 -07 000000502 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:13:12.044 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.044 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:12.044 -07 000000474 INF: FPGA: Recv ZSGSRD 30517
17-03-18 05:13:12.054 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.054 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:12.054 -07 000000501 INF: FPGA: Recv ZPIEZORD 26281
17-03-18 05:13:12.064 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.064 -07 000000479 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.3 V.
17-03-18 05:13:12.064 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30510 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30512 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30504 (-135.5 uncal um), Max = 30517 (-135.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:13:12.064 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30510, posNoise = 7, negNoise = 6
17-03-18 05:13:12.064 -07 000000479 INF: Z Motor: After move to -0.136329, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:12.064 -07 000000479 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:13:12.064 -07 000000479 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:12.114 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:13:12.114 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:12.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:12.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:12.114 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:12.114 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:12.114 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:12.114 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:12.114 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:12.114 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:12.124 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:12.124 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:12.134 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:13:12.134 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:13:12.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:12.184 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:12.484 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:12.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:12.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:12.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:12.514 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:12.524 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:12.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 05:13:12.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:13:12.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:12.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:13:12.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:13:12.624 -07 000000455 INF: Autofocus start
17-03-18 05:13:12.624 -07 000000455 INF: MeasureProfile start
17-03-18 05:13:12.624 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:12.624 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:12.634 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:12.634 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:12.634 -07 000000455 INF: MeasureProfile done
17-03-18 05:13:12.634 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:13:12.634 -07 000000455 INF: Autofocus finished
17-03-18 05:13:12.834 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:12.834 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:12.834 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136326064456262. ----------
17-03-18 05:13:12.834 -07 000000610 INF: Cycle	134	Tile	12	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:12.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28276, sync = True, waitForSettling = True)
17-03-18 05:13:12.844 -07 000000610 INF: Z Motor: Moving to -0.129439 mm, started at -0.136326 mm, distance = 6.89 um
17-03-18 05:13:12.844 -07 000000610 INF: FPGA: Xmit ZDACW 28276\n [Z Motor]
17-03-18 05:13:12.844 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:13:12.854 -07 000000610 INF: FPGA: 'ZDACW 28276' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:12.854 -07 000000608 INF: FPGA: Recv ZDACR 28276
17-03-18 05:13:12.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:12.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:13.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.014 -07 000000461 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:13:13.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:13.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.024 -07 000000455 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:13:13.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.034 -07 000000512 INF: FPGA: Recv ZSGSRD 29438
17-03-18 05:13:13.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.044 -07 000000447 INF: FPGA: Recv ZSGSRD 29433
17-03-18 05:13:13.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29438
17-03-18 05:13:13.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.064 -07 000000480 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:13:13.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.074 -07 000000606 INF: FPGA: Recv ZSGSRD 29443
17-03-18 05:13:13.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29438
17-03-18 05:13:13.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.094 -07 000000447 INF: FPGA: Recv ZSGSRD 29437
17-03-18 05:13:13.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:13.104 -07 000000479 INF: FPGA: Recv ZSGSRD 29441
17-03-18 05:13:13.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:13.114 -07 000000480 INF: FPGA: Recv ZPIEZORD 24878
17-03-18 05:13:13.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:13.124 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.315 V. Piezo Error = -10.0 V.
17-03-18 05:13:13.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29439 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29438 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29443 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:13:13.124 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29439, posNoise = 4, negNoise = 6
17-03-18 05:13:13.124 -07 000000610 INF: Z Motor: After move to -0.129439, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:13.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:13:13.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:13.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:13.124 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:13.124 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:13.124 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:13.124 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:13.124 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:13.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:13.124 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:13:13.124 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:13.124 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:13:13.124 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:13.134 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:13.134 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:13.134 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:13:13.134 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:13.144 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:13:13.144 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:13.144 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:13:13.144 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:13.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28452 150\n [Camera]
17-03-18 05:13:13.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:13.774 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:13.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:13.774 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:13.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:13.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:13.784 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:13.784 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:13.784 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:13.784 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:13.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:13:13.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28452 819
17-03-18 05:13:14.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972
17-03-18 05:13:14.164 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:13:14.164 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:13:14.164 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:14.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:13:14.164 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:13:14.164 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:14.164 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:14.164 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:13:14.164 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:14.174 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:13:14.324 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:14.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:14.334 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:14.334 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:14.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:14.334 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:14.334 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:14.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:13:14.334 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:14.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:13:14.524 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:13:14.524 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:14.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28452 150' command took 2 ms to send, 1372 ms to get response, and 1379 ms overall
17-03-18 05:13:14.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:14.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129445733252436. ------
17-03-18 05:13:14.524 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13593 mm
17-03-18 05:13:14.524 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:14.534 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:13:14.534 -07 000000479 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:13:14.534 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29695, sync = True, waitForSettling = False)
17-03-18 05:13:14.534 -07 000000447 INF: Z Motor: Moving to -0.135935 mm, started at -0.129446 mm, distance = -6.49 um
17-03-18 05:13:14.544 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:14.544 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:14.554 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:14.554 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:13:14.554 -07 000000606 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:13:14.564 -07 000000447 INF: FPGA: Xmit ZDACW 29695\n [Z Motor]
17-03-18 05:13:14.564 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:13:14.564 -07 000000479 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:14.564 -07 000000479 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:14.564 -07 000000479 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:13:14.564 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:13:14.574 -07 000000447 INF: FPGA: 'ZDACW 29695' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:13:14.584 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:14.594 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:14.604 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:14.604 -07 000000608 INF: FPGA: Recv ZDACR 29695
17-03-18 05:13:14.614 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:13:14.614 -07 000000447 INF: Z Motor: MoveAbsStepped took 79 ms (did NOT wait for settling yet))
17-03-18 05:13:14.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:13:14.724 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:13:14.724 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:14.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:13:14.724 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:13:14.724 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:14.734 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:14.744 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:13:14.744 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 14 ms.
17-03-18 05:13:14.744 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:13:14.784 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:14.784 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:13:14.964 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.023489,
17-03-18 05:13:14.964 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:13:14.964 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall
17-03-18 05:13:15.024 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:15.024 -07 000000461 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:13:15.034 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:15.034 -07 000000479 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:15.034 -07 000000479 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:13:15.034 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.846 mm, average velocity = 2.089 mm/sec
17-03-18 05:13:15.984 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:15.984 -07 000000581 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:13:15.994 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:15.994 -07 000000479 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:16.024 -07 000000479 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:16.024 -07 000000479 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:16.024 -07 000000479 INF: Y Motor: Moved to 69.8628 after 1492 ms (table move)
17-03-18 05:13:16.024 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135935 mm (DAC = 29695)
17-03-18 05:13:16.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.034 -07 000000382 INF: FPGA: Recv ZSGSRD 30442
17-03-18 05:13:16.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:13:16.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.034 -07 000000606 INF: FPGA: Recv ZSGSRD 30457
17-03-18 05:13:16.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.044 -07 000000579 INF: FPGA: Recv ZSGSRD 30446
17-03-18 05:13:16.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.054 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.054 -07 000000467 INF: FPGA: Recv ZSGSRD 30445
17-03-18 05:13:16.064 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.064 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.064 -07 000000569 INF: FPGA: Recv ZSGSRD 30455
17-03-18 05:13:16.074 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.074 -07 000000461 INF: FPGA: Recv ZSGSRD 30445
17-03-18 05:13:16.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.084 -07 000000447 INF: FPGA: Recv ZSGSRD 30458
17-03-18 05:13:16.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.094 -07 000000626 INF: FPGA: Recv ZSGSRD 30452
17-03-18 05:13:16.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.104 -07 000000467 INF: FPGA: Recv ZSGSRD 30452
17-03-18 05:13:16.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:16.114 -07 000000569 INF: FPGA: Recv ZSGSRD 30459
17-03-18 05:13:16.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:16.124 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:16.124 -07 000000618 INF: FPGA: Recv ZPIEZORD 26212
17-03-18 05:13:16.134 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:16.134 -07 000000424 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.3 V.
17-03-18 05:13:16.134 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30451 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30452 (-135.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30442 (-135.1 uncal um), Max = 30459 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:13:16.134 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30451, posNoise = 8, negNoise = 9
17-03-18 05:13:16.134 -07 000000424 INF: Z Motor: After move to -0.135935, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:16.134 -07 000000424 INF: Z Motor: Settle wait time = 1497 ms, measure time = 103 ms (allowed 150 ms), total time = 1600 ms
17-03-18 05:13:16.134 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:16.184 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1652 ms
17-03-18 05:13:16.184 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:16.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:16.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:16.184 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:16.184 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:16.184 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:16.184 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:16.184 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:16.184 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:16.194 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:16.194 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:16.204 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:13:16.204 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:13:16.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:16.254 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:16.554 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:16.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:16.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:16.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 05:13:16.594 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:16.594 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:16.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:13:16.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:13:16.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:16.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:13:16.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:13:16.694 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:16.694 -07 000000606 INF: Autofocus start
17-03-18 05:13:16.694 -07 000000606 INF: MeasureProfile start
17-03-18 05:13:16.694 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:16.704 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:16.704 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:16.704 -07 000000606 INF: MeasureProfile done
17-03-18 05:13:16.704 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:13:16.704 -07 000000606 INF: Autofocus finished
17-03-18 05:13:16.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:16.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:16.904 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:16.904 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:16.914 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135947035939898. ----------
17-03-18 05:13:16.914 -07 000000610 INF: Cycle	134	Tile	13	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:16.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28202, sync = True, waitForSettling = True)
17-03-18 05:13:16.914 -07 000000610 INF: Z Motor: Moving to -0.129100 mm, started at -0.135947 mm, distance = 6.85 um
17-03-18 05:13:16.914 -07 000000610 INF: FPGA: Xmit ZDACW 28202\n [Z Motor]
17-03-18 05:13:16.924 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:13:16.924 -07 000000610 INF: FPGA: 'ZDACW 28202' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:13:16.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:16.924 -07 000000581 INF: FPGA: Recv ZDACR 28202
17-03-18 05:13:16.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:13:16.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:17.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29386
17-03-18 05:13:17.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.094 -07 000000608 INF: FPGA: Recv ZSGSRD 29387
17-03-18 05:13:17.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.104 -07 000000455 INF: FPGA: Recv ZSGSRD 29389
17-03-18 05:13:17.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.114 -07 000000618 INF: FPGA: Recv ZSGSRD 29382
17-03-18 05:13:17.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.124 -07 000000626 INF: FPGA: Recv ZSGSRD 29389
17-03-18 05:13:17.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.134 -07 000000480 INF: FPGA: Recv ZSGSRD 29385
17-03-18 05:13:17.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.144 -07 000000501 INF: FPGA: Recv ZSGSRD 29389
17-03-18 05:13:17.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.154 -07 000000625 INF: FPGA: Recv ZSGSRD 29388
17-03-18 05:13:17.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29383
17-03-18 05:13:17.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:17.174 -07 000000581 INF: FPGA: Recv ZSGSRD 29391
17-03-18 05:13:17.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:17.184 -07 000000579 INF: FPGA: Recv ZPIEZORD 24829
17-03-18 05:13:17.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:17.194 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -10.0 V.
17-03-18 05:13:17.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29387 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29388 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29382 (-128.3 uncal um), Max = 29391 (-128.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:13:17.194 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29387, posNoise = 4, negNoise = 5
17-03-18 05:13:17.194 -07 000000610 INF: Z Motor: After move to -0.129100, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:17.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 05:13:17.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:17.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:17.194 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:17.194 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:17.194 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:17.194 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:17.194 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:17.194 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:17.194 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:17.194 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:13:17.194 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:17.194 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:17.204 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:13:17.204 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:17.204 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:17.204 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:17.214 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:13:17.214 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:13:17.214 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:13:17.214 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:17.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28379 150\n [Camera]
17-03-18 05:13:17.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:17.854 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:17.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:17.854 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:17.854 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:17.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:13:17.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:17.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:17.854 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:17.854 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:17.854 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:13:18.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28379 819
17-03-18 05:13:18.194 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:18.224 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:13:18.224 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:13:18.224 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:18.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:13:18.234 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:13:18.234 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:18.234 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:13:18.234 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:13:18.234 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:13:18.244 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:13:18.404 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1180
17-03-18 05:13:18.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1180
17-03-18 05:13:18.404 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:18.404 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:18.404 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:13:18.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1180
17-03-18 05:13:18.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1180
17-03-18 05:13:18.404 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:18.404 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:18.404 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:13:18.594 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:13:18.594 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:18.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28379 150' command took 2 ms to send, 1374 ms to get response, and 1380 ms overall
17-03-18 05:13:18.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:18.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129111674221064. ------
17-03-18 05:13:18.724 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:18.724 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13543 mm
17-03-18 05:13:18.724 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:18.724 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:18.724 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:13:18.724 -07 000000461 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:13:18.724 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29584, sync = True, waitForSettling = False)
17-03-18 05:13:18.724 -07 000000618 INF: Z Motor: Moving to -0.135427 mm, started at -0.129112 mm, distance = -6.32 um
17-03-18 05:13:18.734 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:18.734 -07 000000618 INF: FPGA: Xmit ZDACW 29584\n [Z Motor]
17-03-18 05:13:18.734 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:13:18.744 -07 000000618 INF: FPGA: 'ZDACW 29584' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:13:18.744 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:18.744 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:13:18.754 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:13:18.754 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:18.754 -07 000000461 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:18.754 -07 000000461 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:13:18.754 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:18.764 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:18.764 -07 000000474 INF: FPGA: Recv ZDACR 29584
17-03-18 05:13:18.774 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:13:18.774 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:18.774 -07 000000618 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:13:18.804 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:13:18.804 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:13:18.804 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:18.804 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:13:18.804 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:13:18.804 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:18.814 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:18.814 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:13:18.814 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:13:18.814 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:13:18.954 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:18.954 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 05:13:19.144 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:13:19.144 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:13:19.194 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:19.204 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:13:19.204 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:13:19.204 -07 000000461 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:19.204 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:13:19.204 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 05:13:20.154 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:20.154 -07 000000606 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:13:20.164 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:20.164 -07 000000461 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:20.194 -07 000000461 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:20.194 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:20.194 -07 000000461 INF: Y Motor: Moved to 70.6880 after 1462 ms (table move)
17-03-18 05:13:20.194 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135427 mm (DAC = 29584)
17-03-18 05:13:20.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.194 -07 000000382 INF: FPGA: Recv ZSGSRD 30374
17-03-18 05:13:20.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:20.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.204 -07 000000625 INF: FPGA: Recv ZSGSRD 30369
17-03-18 05:13:20.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.214 -07 000000479 INF: FPGA: Recv ZSGSRD 30368
17-03-18 05:13:20.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.224 -07 000000618 INF: FPGA: Recv ZSGSRD 30365
17-03-18 05:13:20.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.234 -07 000000474 INF: FPGA: Recv ZSGSRD 30365
17-03-18 05:13:20.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.244 -07 000000502 INF: FPGA: Recv ZSGSRD 30371
17-03-18 05:13:20.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30373
17-03-18 05:13:20.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.264 -07 000000382 INF: FPGA: Recv ZSGSRD 30370
17-03-18 05:13:20.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.274 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30374
17-03-18 05:13:20.284 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.284 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:20.284 -07 000000625 INF: FPGA: Recv ZSGSRD 30372
17-03-18 05:13:20.294 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.294 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:20.294 -07 000000461 INF: FPGA: Recv ZPIEZORD 26178
17-03-18 05:13:20.304 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:20.304 -07 000000447 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -9.2 V.
17-03-18 05:13:20.304 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30370 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30370 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30365 (-134.6 uncal um), Max = 30374 (-134.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:13:20.304 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30370, posNoise = 4, negNoise = 5
17-03-18 05:13:20.304 -07 000000447 INF: Z Motor: After move to -0.135427, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:20.304 -07 000000447 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:13:20.304 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:20.324 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.023489,
17-03-18 05:13:20.354 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:13:20.354 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:20.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:20.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:20.354 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:20.354 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:20.354 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:20.354 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:20.354 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:13:20.354 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:20.364 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:20.364 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:20.364 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:13:20.364 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:13:20.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:20.414 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:20.714 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:20.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:20.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:20.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:20.754 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:20.754 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:20.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:13:20.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:13:20.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:20.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:13:20.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:13:20.854 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:20.854 -07 000000455 INF: Autofocus start
17-03-18 05:13:20.854 -07 000000455 INF: MeasureProfile start
17-03-18 05:13:20.854 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:20.864 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:20.864 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:20.864 -07 000000455 INF: MeasureProfile done
17-03-18 05:13:20.864 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:13:20.864 -07 000000455 INF: Autofocus finished
17-03-18 05:13:21.064 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:21.064 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:13:21.064 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135426674756415. ----------
17-03-18 05:13:21.074 -07 000000610 INF: Cycle	134	Tile	14	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:21.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28108, sync = True, waitForSettling = True)
17-03-18 05:13:21.074 -07 000000610 INF: Z Motor: Moving to -0.128670 mm, started at -0.135427 mm, distance = 6.76 um
17-03-18 05:13:21.074 -07 000000610 INF: FPGA: Xmit ZDACW 28108\n [Z Motor]
17-03-18 05:13:21.074 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:13:21.084 -07 000000610 INF: FPGA: 'ZDACW 28108' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:21.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:21.084 -07 000000480 INF: FPGA: Recv ZDACR 28108
17-03-18 05:13:21.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:21.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.244 -07 000000618 INF: FPGA: Recv ZSGSRD 29320
17-03-18 05:13:21.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:21.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.254 -07 000000447 INF: FPGA: Recv ZSGSRD 29318
17-03-18 05:13:21.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.264 -07 000000479 INF: FPGA: Recv ZSGSRD 29315
17-03-18 05:13:21.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.274 -07 000000424 INF: FPGA: Recv ZSGSRD 29320
17-03-18 05:13:21.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.284 -07 000000569 INF: FPGA: Recv ZSGSRD 29319
17-03-18 05:13:21.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.294 -07 000000382 INF: FPGA: Recv ZSGSRD 29323
17-03-18 05:13:21.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.304 -07 000000447 INF: FPGA: Recv ZSGSRD 29320
17-03-18 05:13:21.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.314 -07 000000608 INF: FPGA: Recv ZSGSRD 29318
17-03-18 05:13:21.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.324 -07 000000626 INF: FPGA: Recv ZSGSRD 29316
17-03-18 05:13:21.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:21.334 -07 000000569 INF: FPGA: Recv ZSGSRD 29314
17-03-18 05:13:21.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:21.344 -07 000000625 INF: FPGA: Recv ZPIEZORD 24799
17-03-18 05:13:21.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:21.354 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.9 V.
17-03-18 05:13:21.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29314 (-127.9 uncal um), Max = 29323 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:21.354 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 5, negNoise = 4
17-03-18 05:13:21.354 -07 000000610 INF: Z Motor: After move to -0.128670, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:21.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:13:21.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:21.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:21.354 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:21.354 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:21.354 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:21.354 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:21.354 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:21.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:21.354 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:21.354 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:21.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:13:21.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:21.354 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:13:21.354 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:21.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:13:21.364 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:21.364 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:13:21.364 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:13:21.374 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:13:21.374 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:13:21.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28285 150\n [Camera]
17-03-18 05:13:21.574 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:21.744 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:21.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:22.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:22.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:22.004 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:22.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:22.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:22.014 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:22.014 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:22.014 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:22.014 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:22.014 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:13:22.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28285 819
17-03-18 05:13:22.344 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:22.394 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:13:22.394 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:13:22.394 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:22.394 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:13:22.394 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:13:22.394 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:22.394 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:22.394 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:13:22.394 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:22.404 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:13:22.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:22.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:22.564 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:22.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:22.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:22.564 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:22.564 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:22.564 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:13:22.574 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:22.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:13:22.744 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:13:22.754 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:22.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28285 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-18 05:13:22.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:22.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128668403583283. ------
17-03-18 05:13:22.754 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:22.754 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13552 mm
17-03-18 05:13:22.754 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:22.754 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:13:22.754 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:13:22.754 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:22.754 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29605, sync = True, waitForSettling = False)
17-03-18 05:13:22.754 -07 000000447 INF: Z Motor: Moving to -0.135523 mm, started at -0.128668 mm, distance = -6.85 um
17-03-18 05:13:22.764 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:13:22.764 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:22.774 -07 000000447 INF: FPGA: Xmit ZDACW 29605\n [Z Motor]
17-03-18 05:13:22.774 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:13:22.784 -07 000000447 INF: FPGA: 'ZDACW 29605' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:13:22.784 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:22.784 -07 000000382 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:13:22.794 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:13:22.794 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:22.794 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:22.794 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:22.904 -07 000000626 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:13:22.904 -07 000000625 INF: FPGA: Recv ZDACR 29605
17-03-18 05:13:22.904 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:22.904 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-18 05:13:22.904 -07 000000447 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-18 05:13:22.964 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:22.964 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:22.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:13:22.964 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:13:22.964 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:22.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:13:22.964 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:13:22.964 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:22.974 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:22.974 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:13:22.974 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:22.974 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:13:23.284 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:13:23.284 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-18 05:13:23.334 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:23.334 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:13:23.344 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:13:23.344 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:23.344 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:13:23.344 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.234 mm/sec
17-03-18 05:13:24.294 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:24.294 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:13:24.304 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:24.304 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:24.334 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:24.334 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:24.334 -07 000000626 INF: Y Motor: Moved to 71.5186 after 1574 ms (table move)
17-03-18 05:13:24.334 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135523 mm (DAC = 29605)
17-03-18 05:13:24.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.334 -07 000000480 INF: FPGA: Recv ZSGSRD 30392
17-03-18 05:13:24.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:13:24.344 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.344 -07 000000382 INF: FPGA: Recv ZSGSRD 30382
17-03-18 05:13:24.354 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.354 -07 000000608 INF: FPGA: Recv ZSGSRD 30388
17-03-18 05:13:24.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.364 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.364 -07 000000618 INF: FPGA: Recv ZSGSRD 30382
17-03-18 05:13:24.374 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.374 -07 000000474 INF: FPGA: Recv ZSGSRD 30391
17-03-18 05:13:24.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:13:24.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.394 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.394 -07 000000461 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:13:24.404 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.404 -07 000000608 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:13:24.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.414 -07 000000618 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:13:24.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:24.424 -07 000000480 INF: FPGA: Recv ZSGSRD 30388
17-03-18 05:13:24.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.434 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:24.434 -07 000000625 INF: FPGA: Recv ZPIEZORD 26148
17-03-18 05:13:24.444 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:24.444 -07 000000467 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.3 V.
17-03-18 05:13:24.444 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30387 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30382 (-134.7 uncal um), Max = 30392 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:24.444 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 6, negNoise = 4
17-03-18 05:13:24.444 -07 000000467 INF: Z Motor: After move to -0.135523, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:24.444 -07 000000467 INF: Z Motor: Settle wait time = 1576 ms, measure time = 105 ms (allowed 150 ms), total time = 1681 ms
17-03-18 05:13:24.444 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:24.494 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 05:13:24.494 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:24.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:24.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:24.494 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:24.494 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:24.494 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:24.494 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:24.494 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:24.494 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:24.504 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:24.504 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:24.514 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:13:24.514 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:13:24.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:24.564 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:24.864 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:24.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:24.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:24.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:24.904 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:24.904 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:24.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-18 05:13:24.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:13:24.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:24.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:13:24.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:13:25.004 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:25.004 -07 000000501 INF: Autofocus start
17-03-18 05:13:25.004 -07 000000501 INF: MeasureProfile start
17-03-18 05:13:25.004 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:25.014 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:13:25.014 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:25.014 -07 000000501 INF: MeasureProfile done
17-03-18 05:13:25.014 -07 000000501 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 05:13:25.014 -07 000000501 INF: Autofocus finished
17-03-18 05:13:25.214 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:25.214 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:25.214 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135529462150683. ----------
17-03-18 05:13:25.214 -07 000000610 INF: Cycle	134	Tile	15	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:25.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28082, sync = True, waitForSettling = True)
17-03-18 05:13:25.224 -07 000000610 INF: Z Motor: Moving to -0.128551 mm, started at -0.135529 mm, distance = 6.98 um
17-03-18 05:13:25.224 -07 000000610 INF: FPGA: Xmit ZDACW 28082\n [Z Motor]
17-03-18 05:13:25.224 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:13:25.234 -07 000000610 INF: FPGA: 'ZDACW 28082' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:13:25.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:25.234 -07 000000501 INF: FPGA: Recv ZDACR 28082
17-03-18 05:13:25.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:25.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29290
17-03-18 05:13:25.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:25.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.404 -07 000000502 INF: FPGA: Recv ZSGSRD 29298
17-03-18 05:13:25.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.414 -07 000000382 INF: FPGA: Recv ZSGSRD 29293
17-03-18 05:13:25.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:13:25.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.434 -07 000000479 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:13:25.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.444 -07 000000447 INF: FPGA: Recv ZSGSRD 29303
17-03-18 05:13:25.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.454 -07 000000608 INF: FPGA: Recv ZSGSRD 29301
17-03-18 05:13:25.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.464 -07 000000618 INF: FPGA: Recv ZSGSRD 29302
17-03-18 05:13:25.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.474 -07 000000606 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:13:25.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:25.484 -07 000000455 INF: FPGA: Recv ZSGSRD 29299
17-03-18 05:13:25.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:25.494 -07 000000447 INF: FPGA: Recv ZPIEZORD 24776
17-03-18 05:13:25.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:25.504 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.9 V.
17-03-18 05:13:25.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29302 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29290 (-127.7 uncal um), Max = 29306 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:13:25.504 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 6, negNoise = 10
17-03-18 05:13:25.504 -07 000000610 INF: Z Motor: After move to -0.128551, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:25.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:13:25.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:25.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:25.504 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:25.504 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:25.504 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:25.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:25.504 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:25.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:25.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:25.504 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:25.504 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:25.504 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:25.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:25.514 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:25.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:13:25.514 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:25.524 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:13:25.524 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:13:25.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:13:25.524 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:13:25.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28259 150\n [Camera]
17-03-18 05:13:25.684 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.003063,
17-03-18 05:13:25.724 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:13:26.154 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:26.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:26.154 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:26.154 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:26.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:26.164 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:26.164 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:26.164 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:26.164 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:26.164 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:13:26.344 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28259 819
17-03-18 05:13:26.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:26.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:13:26.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:13:26.544 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:13:26.544 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:26.544 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:13:26.544 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:26.544 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:26.544 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:26.544 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:13:26.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:13:26.704 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:26.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:26.714 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:26.714 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:26.714 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:13:26.714 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:26.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:26.714 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:26.714 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:26.714 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:13:26.744 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:26.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:26.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:26.904 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:26.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28259 150' command took 2 ms to send, 1373 ms to get response, and 1380 ms overall
17-03-18 05:13:26.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:26.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128552767764731. ------
17-03-18 05:13:26.904 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:26.904 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13487 mm
17-03-18 05:13:26.904 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:26.914 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:26.914 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:13:26.914 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:13:26.914 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:13:26.914 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:26.914 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29463, sync = True, waitForSettling = False)
17-03-18 05:13:26.914 -07 000000480 INF: Z Motor: Moving to -0.134873 mm, started at -0.128553 mm, distance = -6.32 um
17-03-18 05:13:26.914 -07 000000479 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:13:26.924 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:26.924 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:26.924 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:26.924 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:13:26.924 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:26.934 -07 000000480 INF: FPGA: Xmit ZDACW 29463\n [Z Motor]
17-03-18 05:13:26.934 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:13:26.944 -07 000000480 INF: FPGA: 'ZDACW 29463' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:13:26.944 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:26.954 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:26.954 -07 000000467 INF: FPGA: Recv ZDACR 29463
17-03-18 05:13:26.964 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:13:26.964 -07 000000480 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:13:27.114 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:13:27.114 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:13:27.114 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:27.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:13:27.114 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:13:27.114 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:27.114 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:27.114 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:13:27.124 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:13:27.124 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:27.124 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 05:13:27.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:13:27.314 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:13:27.314 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:13:27.364 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:27.374 -07 000000579 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:13:27.374 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:13:27.374 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:27.374 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 05:13:27.374 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 05:13:28.324 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:28.324 -07 000000608 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:13:28.334 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:28.334 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:28.364 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:28.364 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:28.364 -07 000000512 INF: Y Motor: Moved to 72.3491 after 1449 ms (table move)
17-03-18 05:13:28.364 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134873 mm (DAC = 29463)
17-03-18 05:13:28.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.364 -07 000000424 INF: FPGA: Recv ZSGSRD 30291
17-03-18 05:13:28.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:13:28.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.374 -07 000000581 INF: FPGA: Recv ZSGSRD 30282
17-03-18 05:13:28.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30282
17-03-18 05:13:28.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.394 -07 000000501 INF: FPGA: Recv ZSGSRD 30281
17-03-18 05:13:28.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.404 -07 000000502 INF: FPGA: Recv ZSGSRD 30288
17-03-18 05:13:28.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.414 -07 000000501 INF: FPGA: Recv ZSGSRD 30285
17-03-18 05:13:28.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.424 -07 000000474 INF: FPGA: Recv ZSGSRD 30282
17-03-18 05:13:28.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.434 -07 000000579 INF: FPGA: Recv ZSGSRD 30282
17-03-18 05:13:28.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.444 -07 000000467 INF: FPGA: Recv ZSGSRD 30286
17-03-18 05:13:28.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:28.454 -07 000000581 INF: FPGA: Recv ZSGSRD 30288
17-03-18 05:13:28.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.464 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:28.464 -07 000000512 INF: FPGA: Recv ZPIEZORD 26076
17-03-18 05:13:28.474 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:28.474 -07 000000382 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -9.3 V.
17-03-18 05:13:28.474 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30285 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30284 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30281 (-134.1 uncal um), Max = 30291 (-134.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:28.474 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30285, posNoise = 6, negNoise = 4
17-03-18 05:13:28.474 -07 000000382 INF: Z Motor: After move to -0.134873, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:28.474 -07 000000382 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 05:13:28.474 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:28.524 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 05:13:28.524 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:28.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:28.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:28.524 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:28.524 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:28.524 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:28.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:28.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:13:28.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:28.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:28.534 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:28.534 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:13:28.534 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:13:28.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:28.584 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:28.884 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:28.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:28.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:28.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 05:13:28.924 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:28.924 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:28.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:13:29.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:13:29.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:29.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:13:29.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:13:29.024 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:29.024 -07 000000618 INF: Autofocus start
17-03-18 05:13:29.024 -07 000000618 INF: MeasureProfile start
17-03-18 05:13:29.024 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:29.034 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:29.034 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:29.034 -07 000000618 INF: MeasureProfile done
17-03-18 05:13:29.034 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:13:29.034 -07 000000618 INF: Autofocus finished
17-03-18 05:13:29.234 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:29.234 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:29.234 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.134880616724366. ----------
17-03-18 05:13:29.234 -07 000000610 INF: Cycle	134	Tile	16	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:29.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27987, sync = True, waitForSettling = True)
17-03-18 05:13:29.244 -07 000000610 INF: Z Motor: Moving to -0.128116 mm, started at -0.134881 mm, distance = 6.76 um
17-03-18 05:13:29.244 -07 000000610 INF: FPGA: Xmit ZDACW 27987\n [Z Motor]
17-03-18 05:13:29.244 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:13:29.254 -07 000000610 INF: FPGA: 'ZDACW 27987' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:29.254 -07 000000608 INF: FPGA: Recv ZDACR 27987
17-03-18 05:13:29.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:29.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:13:29.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.424 -07 000000581 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:13:29.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.434 -07 000000447 INF: FPGA: Recv ZSGSRD 29235
17-03-18 05:13:29.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.444 -07 000000626 INF: FPGA: Recv ZSGSRD 29235
17-03-18 05:13:29.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.454 -07 000000455 INF: FPGA: Recv ZSGSRD 29242
17-03-18 05:13:29.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.464 -07 000000579 INF: FPGA: Recv ZSGSRD 29234
17-03-18 05:13:29.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.474 -07 000000569 INF: FPGA: Recv ZSGSRD 29230
17-03-18 05:13:29.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:13:29.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29233
17-03-18 05:13:29.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:29.504 -07 000000502 INF: FPGA: Recv ZSGSRD 29235
17-03-18 05:13:29.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:29.514 -07 000000461 INF: FPGA: Recv ZPIEZORD 24717
17-03-18 05:13:29.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:29.524 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.9 V.
17-03-18 05:13:29.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29234 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29230 (-127.3 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:29.524 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29234, posNoise = 8, negNoise = 4
17-03-18 05:13:29.524 -07 000000610 INF: Z Motor: After move to -0.128116, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:29.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:13:29.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:29.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:29.524 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:29.524 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:29.524 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:29.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:29.524 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:29.524 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:29.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:29.524 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:29.524 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:29.524 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:29.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:29.534 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:29.534 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:13:29.534 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:29.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:13:29.544 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:13:29.544 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:13:29.544 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:13:29.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28164 150\n [Camera]
17-03-18 05:13:29.744 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:30.184 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:30.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:30.184 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:30.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:30.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1149253448, 0x0, 391868352) start.
17-03-18 05:13:30.184 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:30.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:30.184 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:30.184 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:30.184 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:13:30.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28164 819
17-03-18 05:13:30.524 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:13:30.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:13:30.584 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:13:30.584 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:30.584 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1149253448, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:13:30.584 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:13:30.584 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:30.584 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:30.584 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:30.584 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:13:30.594 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:13:30.734 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:30.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:30.734 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:30.734 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:30.734 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:13:30.734 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:30.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:30.734 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:30.734 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:30.734 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:13:30.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:30.924 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:30.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28164 150' command took 4 ms to send, 1367 ms to get response, and 1378 ms overall
17-03-18 05:13:30.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:30.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128128769763375. ------
17-03-18 05:13:31.044 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13467 mm
17-03-18 05:13:31.044 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:31.054 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:31.054 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 3.999021,
17-03-18 05:13:31.054 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:13:31.054 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:13:31.054 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:31.054 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29418, sync = True, waitForSettling = False)
17-03-18 05:13:31.054 -07 000000447 INF: Z Motor: Moving to -0.134667 mm, started at -0.128129 mm, distance = -6.54 um
17-03-18 05:13:31.064 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:31.064 -07 000000447 INF: FPGA: Xmit ZDACW 29418\n [Z Motor]
17-03-18 05:13:31.064 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:13:31.074 -07 000000447 INF: FPGA: 'ZDACW 29418' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:13:31.084 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:31.084 -07 000000512 INF: FPGA: Recv YRDPOS 148172
17-03-18 05:13:31.094 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:31.094 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 05:13:31.094 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:31.094 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:31.094 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-18 05:13:31.104 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:31.104 -07 000000579 INF: FPGA: Recv ZDACR 29418
17-03-18 05:13:31.114 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:13:31.114 -07 000000447 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:13:31.124 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:31.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 05:13:31.124 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:13:31.124 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:31.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:13:31.124 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:13:31.124 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:31.134 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:31.134 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:13:31.134 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:13:31.134 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:13:31.294 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:31.294 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:13:31.494 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:13:31.504 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 404 ms overall
17-03-18 05:13:31.544 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:31.554 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:13:31.564 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:31.564 -07 000000626 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:31.564 -07 000000626 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:13:31.564 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.843 mm, average velocity = 2.088 mm/sec
17-03-18 05:13:31.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:32.514 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:32.514 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:13:32.524 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:32.524 -07 000000626 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:32.554 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:32.554 -07 000000626 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:32.554 -07 000000626 INF: Y Motor: Moved to 73.1753 after 1498 ms (table move)
17-03-18 05:13:32.554 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134667 mm (DAC = 29418)
17-03-18 05:13:32.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.554 -07 000000480 INF: FPGA: Recv ZSGSRD 30253
17-03-18 05:13:32.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:32.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.564 -07 000000479 INF: FPGA: Recv ZSGSRD 30247
17-03-18 05:13:32.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.574 -07 000000608 INF: FPGA: Recv ZSGSRD 30256
17-03-18 05:13:32.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30254
17-03-18 05:13:32.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.594 -07 000000502 INF: FPGA: Recv ZSGSRD 30247
17-03-18 05:13:32.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.604 -07 000000461 INF: FPGA: Recv ZSGSRD 30247
17-03-18 05:13:32.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.614 -07 000000501 INF: FPGA: Recv ZSGSRD 30254
17-03-18 05:13:32.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.624 -07 000000455 INF: FPGA: Recv ZSGSRD 30249
17-03-18 05:13:32.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.634 -07 000000569 INF: FPGA: Recv ZSGSRD 30253
17-03-18 05:13:32.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:32.644 -07 000000625 INF: FPGA: Recv ZSGSRD 30253
17-03-18 05:13:32.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.654 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:32.654 -07 000000382 INF: FPGA: Recv ZPIEZORD 26057
17-03-18 05:13:32.664 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:32.664 -07 000000467 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.489 V. Piezo Error = -9.2 V.
17-03-18 05:13:32.664 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30251 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30253 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30247 (-133.8 uncal um), Max = 30256 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:32.664 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30251, posNoise = 5, negNoise = 4
17-03-18 05:13:32.664 -07 000000467 INF: Z Motor: After move to -0.134667, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:32.664 -07 000000467 INF: Z Motor: Settle wait time = 1500 ms, measure time = 106 ms (allowed 150 ms), total time = 1606 ms
17-03-18 05:13:32.664 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:32.714 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1660 ms
17-03-18 05:13:32.714 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:32.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:32.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:32.714 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:32.714 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:32.714 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:32.714 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:32.714 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:32.714 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:32.724 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:32.724 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:32.734 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:13:32.734 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:13:32.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:32.774 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:33.074 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:33.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:33.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:33.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:33.114 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:33.114 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:33.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 05:13:33.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:13:33.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:33.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:13:33.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:13:33.214 -07 000000512 INF: Autofocus start
17-03-18 05:13:33.214 -07 000000512 INF: MeasureProfile start
17-03-18 05:13:33.214 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:33.214 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:33.224 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:33.224 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:33.224 -07 000000512 INF: MeasureProfile done
17-03-18 05:13:33.224 -07 000000512 INF: X=23  Z correction [um]=0.08669062
17-03-18 05:13:33.224 -07 000000512 INF: Autofocus finished
17-03-18 05:13:33.424 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:33.424 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:13:33.424 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134662193511546. ----------
17-03-18 05:13:33.434 -07 000000610 INF: Cycle	134	Tile	17	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:33.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27949, sync = True, waitForSettling = True)
17-03-18 05:13:33.434 -07 000000610 INF: Z Motor: Moving to -0.127942 mm, started at -0.134662 mm, distance = 6.72 um
17-03-18 05:13:33.434 -07 000000610 INF: FPGA: Xmit ZDACW 27949\n [Z Motor]
17-03-18 05:13:33.434 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:13:33.444 -07 000000610 INF: FPGA: 'ZDACW 27949' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:33.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:33.444 -07 000000606 INF: FPGA: Recv ZDACR 27949
17-03-18 05:13:33.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:33.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.604 -07 000000501 INF: FPGA: Recv ZSGSRD 29201
17-03-18 05:13:33.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:33.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.614 -07 000000479 INF: FPGA: Recv ZSGSRD 29207
17-03-18 05:13:33.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.624 -07 000000455 INF: FPGA: Recv ZSGSRD 29203
17-03-18 05:13:33.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.634 -07 000000474 INF: FPGA: Recv ZSGSRD 29202
17-03-18 05:13:33.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:13:33.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.654 -07 000000625 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:13:33.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.664 -07 000000512 INF: FPGA: Recv ZSGSRD 29204
17-03-18 05:13:33.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.674 -07 000000447 INF: FPGA: Recv ZSGSRD 29206
17-03-18 05:13:33.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.684 -07 000000581 INF: FPGA: Recv ZSGSRD 29203
17-03-18 05:13:33.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:33.694 -07 000000467 INF: FPGA: Recv ZSGSRD 29206
17-03-18 05:13:33.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:33.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 24661
17-03-18 05:13:33.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:33.714 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.265 V. Piezo Error = -10.0 V.
17-03-18 05:13:33.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29205 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29205 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29201 (-127.1 uncal um), Max = 29209 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:13:33.714 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29205, posNoise = 4, negNoise = 4
17-03-18 05:13:33.714 -07 000000610 INF: Z Motor: After move to -0.127942, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:33.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:13:33.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:33.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:33.714 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:33.714 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:33.714 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:33.714 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:33.714 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:33.714 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:33.714 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:33.714 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:33.714 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:33.714 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:33.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:13:33.724 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:33.724 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:33.724 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:33.734 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:13:33.734 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:13:33.734 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:13:33.734 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:13:33.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28126 150\n [Camera]
17-03-18 05:13:33.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:34.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:34.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:34.364 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:34.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:34.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:34.374 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:34.374 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:34.374 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:34.374 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:34.374 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:13:34.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28126 819
17-03-18 05:13:34.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:34.754 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:13:34.754 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:13:34.754 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:34.754 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:13:34.754 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:13:34.754 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:34.754 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:34.754 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:13:34.764 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:34.764 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:13:34.914 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:34.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:34.924 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:34.924 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:34.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:34.924 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:34.924 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:34.924 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:13:34.934 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:34.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 05:13:35.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:35.114 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:35.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28126 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-18 05:13:35.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:35.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127942467611264. ------
17-03-18 05:13:35.114 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:35.114 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13377 mm
17-03-18 05:13:35.114 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:35.114 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:13:35.114 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:13:35.114 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29223, sync = True, waitForSettling = False)
17-03-18 05:13:35.114 -07 000000608 INF: Z Motor: Moving to -0.133774 mm, started at -0.127942 mm, distance = -5.83 um
17-03-18 05:13:35.114 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:35.124 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:13:35.124 -07 000000608 INF: FPGA: Xmit ZDACW 29223\n [Z Motor]
17-03-18 05:13:35.244 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:35.244 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:13:35.244 -07 000000608 INF: FPGA: 'ZDACW 29223' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-18 05:13:35.254 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:35.254 -07 000000447 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:13:35.264 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-18 05:13:35.264 -07 000000382 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:35.264 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:35.264 -07 000000424 INF: FPGA: Recv ZDACR 29223
17-03-18 05:13:35.264 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:35.264 -07 000000382 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:13:35.274 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:13:35.274 -07 000000608 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 05:13:35.274 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:35.324 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:13:35.324 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:13:35.324 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:35.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:13:35.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:13:35.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:35.334 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:35.334 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:35.334 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:13:35.334 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:13:35.454 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:35.454 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 331 ms overall
17-03-18 05:13:35.644 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:13:35.644 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:13:35.684 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:35.694 -07 000000480 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:13:35.694 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:13:35.694 -07 000000382 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:35.694 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:13:35.694 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.847 mm, average velocity = 2.212 mm/sec
17-03-18 05:13:36.474 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.003063,
17-03-18 05:13:36.644 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:36.644 -07 000000581 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:13:36.654 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.654 -07 000000382 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:36.674 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:36.674 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:13:36.674 -07 000000382 INF: Y Motor: Moved to 74.0078 after 1555 ms (table move)
17-03-18 05:13:36.674 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133774 mm (DAC = 29223)
17-03-18 05:13:36.674 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.684 -07 000000501 INF: FPGA: Recv ZSGSRD 30115
17-03-18 05:13:36.684 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:13:36.684 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.684 -07 000000618 INF: FPGA: Recv ZSGSRD 30109
17-03-18 05:13:36.694 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:13:36.694 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.694 -07 000000502 INF: FPGA: Recv ZSGSRD 30118
17-03-18 05:13:36.704 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.704 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.704 -07 000000569 INF: FPGA: Recv ZSGSRD 30107
17-03-18 05:13:36.714 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.714 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.714 -07 000000479 INF: FPGA: Recv ZSGSRD 30109
17-03-18 05:13:36.724 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.724 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.724 -07 000000606 INF: FPGA: Recv ZSGSRD 30111
17-03-18 05:13:36.734 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.734 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.734 -07 000000455 INF: FPGA: Recv ZSGSRD 30111
17-03-18 05:13:36.744 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.744 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.744 -07 000000579 INF: FPGA: Recv ZSGSRD 30117
17-03-18 05:13:36.744 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:36.754 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.754 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.754 -07 000000512 INF: FPGA: Recv ZSGSRD 30110
17-03-18 05:13:36.764 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.764 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:36.764 -07 000000581 INF: FPGA: Recv ZSGSRD 30108
17-03-18 05:13:36.774 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.774 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:36.774 -07 000000480 INF: FPGA: Recv ZPIEZORD 25873
17-03-18 05:13:36.784 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:36.784 -07 000000474 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.459 V. Piezo Error = -9.3 V.
17-03-18 05:13:36.784 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30112 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30110 (-133.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30107 (-132.9 uncal um), Max = 30118 (-133.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:13:36.784 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30112, posNoise = 6, negNoise = 5
17-03-18 05:13:36.784 -07 000000474 INF: Z Motor: After move to -0.133774, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:36.784 -07 000000474 INF: Z Motor: Settle wait time = 1559 ms, measure time = 102 ms (allowed 150 ms), total time = 1661 ms
17-03-18 05:13:36.784 -07 000000474 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:36.834 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-18 05:13:36.834 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:36.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:36.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:36.834 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:36.834 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:36.834 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:36.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:36.834 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:36.834 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:36.844 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:36.844 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:36.844 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:13:36.844 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:13:36.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:36.894 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:37.194 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:37.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:37.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:37.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 05:13:37.234 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:37.234 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:37.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:13:37.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 05:13:37.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:37.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:13:37.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:13:37.344 -07 000000455 INF: Autofocus start
17-03-18 05:13:37.344 -07 000000455 INF: MeasureProfile start
17-03-18 05:13:37.344 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:37.354 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:37.354 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:13:37.354 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:37.364 -07 000000455 INF: MeasureProfile done
17-03-18 05:13:37.364 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:13:37.364 -07 000000455 INF: Autofocus finished
17-03-18 05:13:37.554 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:37.554 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 05:13:37.564 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133769228023841. ----------
17-03-18 05:13:37.564 -07 000000610 INF: Cycle	134	Tile	18	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:37.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27730, sync = True, waitForSettling = True)
17-03-18 05:13:37.564 -07 000000610 INF: Z Motor: Moving to -0.126940 mm, started at -0.133769 mm, distance = 6.83 um
17-03-18 05:13:37.564 -07 000000610 INF: FPGA: Xmit ZDACW 27730\n [Z Motor]
17-03-18 05:13:37.564 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:13:37.574 -07 000000610 INF: FPGA: 'ZDACW 27730' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:37.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:37.574 -07 000000581 INF: FPGA: Recv ZDACR 27730
17-03-18 05:13:37.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:37.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.734 -07 000000467 INF: FPGA: Recv ZSGSRD 29051
17-03-18 05:13:37.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:37.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.744 -07 000000606 INF: FPGA: Recv ZSGSRD 29052
17-03-18 05:13:37.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.754 -07 000000474 INF: FPGA: Recv ZSGSRD 29044
17-03-18 05:13:37.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.764 -07 000000479 INF: FPGA: Recv ZSGSRD 29047
17-03-18 05:13:37.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.774 -07 000000581 INF: FPGA: Recv ZSGSRD 29048
17-03-18 05:13:37.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.784 -07 000000455 INF: FPGA: Recv ZSGSRD 29055
17-03-18 05:13:37.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.794 -07 000000502 INF: FPGA: Recv ZSGSRD 29052
17-03-18 05:13:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.804 -07 000000424 INF: FPGA: Recv ZSGSRD 29046
17-03-18 05:13:37.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.814 -07 000000512 INF: FPGA: Recv ZSGSRD 29049
17-03-18 05:13:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:37.824 -07 000000581 INF: FPGA: Recv ZSGSRD 29044
17-03-18 05:13:37.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:37.834 -07 000000626 INF: FPGA: Recv ZPIEZORD 24523
17-03-18 05:13:37.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:37.844 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -9.9 V.
17-03-18 05:13:37.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29049 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29048 (-126.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29044 (-126.1 uncal um), Max = 29055 (-126.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:13:37.844 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29049, posNoise = 6, negNoise = 5
17-03-18 05:13:37.844 -07 000000610 INF: Z Motor: After move to -0.126940, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:37.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:13:37.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:37.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:37.844 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:37.844 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:37.844 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:37.844 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:37.844 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:37.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:37.844 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:37.844 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:37.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:13:37.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:37.854 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:37.854 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:37.854 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:13:37.854 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:37.864 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:13:37.864 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:13:37.864 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:13:37.864 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:13:37.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 27907 150\n [Camera]
17-03-18 05:13:38.064 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:38.494 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:38.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:38.504 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:38.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:38.504 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:38.504 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:38.504 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:38.504 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 05:13:38.504 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:38.504 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:13:38.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27907 819
17-03-18 05:13:38.834 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:38.904 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:13:38.904 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:13:38.904 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:38.904 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:13:38.904 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:13:38.904 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:38.904 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:38.904 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:13:38.904 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:38.914 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:13:39.044 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:39.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:39.054 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:39.054 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:39.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:39.054 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:39.054 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:39.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:13:39.054 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:39.054 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:13:39.244 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:13:39.244 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:39.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 27907 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-18 05:13:39.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:13:39.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126940290517149. ------
17-03-18 05:13:39.244 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:39.244 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13332 mm
17-03-18 05:13:39.244 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:13:39.254 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:13:39.254 -07 000000606 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 05:13:39.254 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:39.254 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:39.254 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:13:39.254 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29124, sync = True, waitForSettling = False)
17-03-18 05:13:39.254 -07 000000502 INF: Z Motor: Moving to -0.133321 mm, started at -0.126940 mm, distance = -6.38 um
17-03-18 05:13:39.254 -07 000000461 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:13:39.264 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:39.264 -07 000000606 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:39.264 -07 000000606 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:13:39.264 -07 000000606 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:13:39.264 -07 000000502 INF: FPGA: Xmit ZDACW 29124\n [Z Motor]
17-03-18 05:13:39.264 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:13:39.274 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:13:39.274 -07 000000502 INF: FPGA: 'ZDACW 29124' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:13:39.284 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:13:39.294 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:39.294 -07 000000501 INF: FPGA: Recv ZDACR 29124
17-03-18 05:13:39.304 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:13:39.304 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:13:39.444 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:13:39.444 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:13:39.444 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:39.444 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:13:39.444 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:13:39.444 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:39.444 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:39.454 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:13:39.454 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:13:39.454 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:13:39.474 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:13:39.474 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:13:39.654 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:13:39.654 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:13:39.684 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:39.694 -07 000000455 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:13:39.694 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:13:39.694 -07 000000606 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:39.694 -07 000000606 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:13:39.694 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:13:40.644 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:40.644 -07 000000474 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:13:40.654 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:40.654 -07 000000606 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:40.664 -07 000000606 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:40.674 -07 000000606 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:13:40.674 -07 000000606 INF: Y Motor: Moved to 74.8311 after 1419 ms (table move)
17-03-18 05:13:40.674 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133321 mm (DAC = 29124)
17-03-18 05:13:40.674 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.674 -07 000000512 INF: FPGA: Recv ZSGSRD 30043
17-03-18 05:13:40.684 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:40.684 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.684 -07 000000501 INF: FPGA: Recv ZSGSRD 30036
17-03-18 05:13:40.694 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.694 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.694 -07 000000382 INF: FPGA: Recv ZSGSRD 30042
17-03-18 05:13:40.704 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.704 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.704 -07 000000626 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:13:40.714 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.714 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.714 -07 000000618 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:13:40.724 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.724 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.724 -07 000000608 INF: FPGA: Recv ZSGSRD 30049
17-03-18 05:13:40.734 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.734 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.734 -07 000000625 INF: FPGA: Recv ZSGSRD 30045
17-03-18 05:13:40.744 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.744 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.744 -07 000000467 INF: FPGA: Recv ZSGSRD 30044
17-03-18 05:13:40.754 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.754 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.754 -07 000000626 INF: FPGA: Recv ZSGSRD 30037
17-03-18 05:13:40.764 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.764 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:40.764 -07 000000424 INF: FPGA: Recv ZSGSRD 30034
17-03-18 05:13:40.774 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.774 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:40.774 -07 000000569 INF: FPGA: Recv ZPIEZORD 25841
17-03-18 05:13:40.784 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:40.784 -07 000000479 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.2 V.
17-03-18 05:13:40.784 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30042 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30044 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30034 (-132.5 uncal um), Max = 30049 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:13:40.784 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30042, posNoise = 7, negNoise = 8
17-03-18 05:13:40.784 -07 000000479 INF: Z Motor: After move to -0.133321, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:40.784 -07 000000479 INF: Z Motor: Settle wait time = 1422 ms, measure time = 106 ms (allowed 150 ms), total time = 1528 ms
17-03-18 05:13:40.784 -07 000000479 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:13:40.834 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-18 05:13:40.834 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:13:40.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:40.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:40.834 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:40.834 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:40.834 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:13:40.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:40.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:13:40.834 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:13:40.844 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:40.844 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:13:40.844 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:13:40.844 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:13:40.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:13:40.894 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:13:41.194 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:13:41.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:13:41.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:13:41.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 05:13:41.234 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:13:41.234 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:13:41.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:13:41.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:13:41.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:41.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:13:41.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:13:41.334 -07 000000626 INF: Autofocus start
17-03-18 05:13:41.334 -07 000000626 INF: MeasureProfile start
17-03-18 05:13:41.334 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:13:41.334 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:13:41.344 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:13:41.344 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:13:41.344 -07 000000626 INF: MeasureProfile done
17-03-18 05:13:41.344 -07 000000626 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:13:41.344 -07 000000626 INF: Autofocus finished
17-03-18 05:13:41.544 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:13:41.544 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:13:41.544 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133319533173918. ----------
17-03-18 05:13:41.544 -07 000000610 INF: Cycle	134	Tile	19	Exposure Settings		A	434	G	209	T	209	C	434
17-03-18 05:13:41.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27664, sync = True, waitForSettling = True)
17-03-18 05:13:41.554 -07 000000610 INF: Z Motor: Moving to -0.126638 mm, started at -0.133320 mm, distance = 6.68 um
17-03-18 05:13:41.554 -07 000000610 INF: FPGA: Xmit ZDACW 27664\n [Z Motor]
17-03-18 05:13:41.554 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:13:41.564 -07 000000610 INF: FPGA: 'ZDACW 27664' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:13:41.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:13:41.564 -07 000000625 INF: FPGA: Recv ZDACR 27664
17-03-18 05:13:41.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:13:41.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.724 -07 000000626 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:13:41.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:13:41.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.734 -07 000000424 INF: FPGA: Recv ZSGSRD 29002
17-03-18 05:13:41.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.744 -07 000000479 INF: FPGA: Recv ZSGSRD 29006
17-03-18 05:13:41.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:41.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 133. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:41.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.754 -07 000000424 INF: FPGA: Recv ZSGSRD 28999
17-03-18 05:13:41.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.764 -07 000000479 INF: FPGA: Recv ZSGSRD 29006
17-03-18 05:13:41.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29001
17-03-18 05:13:41.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.784 -07 000000625 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:13:41.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.794 -07 000000618 INF: FPGA: Recv ZSGSRD 29008
17-03-18 05:13:41.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.804 -07 000000501 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:13:41.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:13:41.814 -07 000000461 INF: FPGA: Recv ZSGSRD 28999
17-03-18 05:13:41.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:41.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:13:41.834 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.009895,
17-03-18 05:13:41.834 -07 000000512 INF: FPGA: Recv ZPIEZORD 24464
17-03-18 05:13:41.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:13:41.844 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.221 V. Piezo Error = -10.0 V.
17-03-18 05:13:41.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 29002 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29000 (-125.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 28999 (-125.8 uncal um), Max = 29008 (-125.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:13:41.844 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29002, posNoise = 6, negNoise = 3
17-03-18 05:13:41.844 -07 000000610 INF: Z Motor: After move to -0.126638, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:13:41.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:13:41.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:13:41.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:13:41.844 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:13:41.844 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:13:41.844 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:13:41.844 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:13:41.844 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:13:41.844 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:13:41.844 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:13:41.844 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:13:41.844 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:13:41.844 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:13:41.844 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:13:41.844 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:13:41.854 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:13:41.854 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:13:41.864 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:13:41.864 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:13:41.864 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:13:41.864 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:13:41.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 27841 150\n [Camera]
17-03-18 05:13:42.064 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:13:42.504 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-18 05:13:42.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-18 05:13:42.504 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:42.504 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:42.504 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:13:42.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-18 05:13:42.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-18 05:13:42.514 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:42.514 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:42.514 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:13:42.694 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27841 819
17-03-18 05:13:42.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-18 05:13:42.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:13:42.894 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:13:42.894 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:42.894 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:13:42.894 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:13:42.894 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:42.894 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:42.894 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:13:42.894 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:13:42.904 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:13:43.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-18 05:13:43.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-18 05:13:43.054 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:13:43.054 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:13:43.054 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:13:43.054 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-18 05:13:43.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-18 05:13:43.054 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:13:43.054 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:13:43.054 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:13:43.244 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-18 05:13:43.244 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:13:43.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 27841 150' command took 2 ms to send, 1368 ms to get response, and 1379 ms overall
17-03-18 05:13:43.464 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:13:43.464 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:13:43.464 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:43.464 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 05:13:43.464 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:13:43.464 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:13:43.464 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:13:43.474 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:13:43.474 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:13:43.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:13:43.474 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:13:43.514 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:13:43.514 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:13:43.554 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:13:43.574 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 05:13:43.574 -07 000000610 INF: Imaging Cycle 134: ScanTilesCommand Cycle 134 time end. Duration was 163897 ms.
17-03-18 05:13:43.574 -07 000000610 INF: =================== Cycle #134 ===================
17-03-18 05:13:43.574 -07 000000610 INF: ===================  ===================
17-03-18 05:13:43.574 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:13:43.584 -07 000000455 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 05:13:43.584 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:13:43.584 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 05:13:43.584 -07 000000512 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 134, FrontChillerTemperature: 4.009895, FrontChillerHeatSinkTemperature: 0.472832, AmbientTemperature: 18.65673, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.3399, GreenLEDSensorTemperature: 27.46701, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 05:13:43.684 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.