17-03-18 05:13:43.734 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:13:43.734 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:13:43.734 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 05:13:43.734 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:43.744 -07 000000608 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:13:43.744 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:13:43.744 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:43.744 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:13:43.744 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:13:43.744 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:13:43.864 -07 000000480 INF: FPGA: Recv YMVTO 154378 873
17-03-18 05:13:43.864 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 115 ms to get response, and 116 ms overall
17-03-18 05:13:43.864 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:13:43.864 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 873 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 05:13:43.864 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 05:13:46.744 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:13:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1838, R2=1908, Total=3746. Warn if over 250 bubbles per interval.
17-03-18 05:13:46.864 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:13:46.864 -07 000000461 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:13:46.874 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:46.874 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:13:46.904 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:13:46.904 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:13:46.904 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3170 ms
17-03-18 05:13:46.914 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 60° ===================
17-03-18 05:13:46.914 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:13:46.914 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:13:46.914 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:13:46.924 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:13:46.924 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:13:46.924 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 05:13:46.934 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:13:46.934 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 60° ===================
17-03-18 05:13:46.934 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:13:46.934 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:13:46.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:13:46.964 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:13:46.964 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:13:46.964 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:13:47.214 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.001704,
17-03-18 05:13:47.264 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:13:47.284 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:13:47.284 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:13:47.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:13:47.354 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:13:47.354 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:13:47.454 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:13:47.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:13:47.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:47.484 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:13:47.484 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:13:47.484 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:13:47.614 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:13:47.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:13:50.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:50.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:13:51.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:51.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:13:51.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:51.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:51.714 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:13:51.714 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:13:51.744 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-18 05:13:51.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1841, R2=1909, Total=3750. Warn if over 250 bubbles per interval.
17-03-18 05:13:51.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:51.874 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:13:51.874 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:13:52.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:52.034 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:13:52.034 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:13:52.034 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:13:52.164 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:13:52.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:52.574 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.983999,
17-03-18 05:13:52.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:52.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:52.654 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:13:52.654 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:13:53.874 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:13:53.874 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:13:53.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:13:53.894 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:13:53.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:13:53.894 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:13:54.034 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:13:54.054 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:13:54.054 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:13:54.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:13:54.124 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:13:54.124 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:13:54.224 -07 000000610 INF: =================== Cycle #135, Pumping Reagent CMS (4) ===================
17-03-18 05:13:54.224 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:13:54.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:54.254 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:13:54.254 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:13:54.254 -07 000000610 INF: =================== Cycle #135, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:13:54.384 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:13:54.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:13:55.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:55.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:13:56.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:56.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:56.344 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 05:13:56.344 -07 000000610 INF: =================== Cycle #135, Pumping Reagent CMS (4) ===================
17-03-18 05:13:56.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:56.504 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:13:56.504 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:13:56.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:56.664 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:13:56.664 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:13:56.664 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:13:56.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:13:56.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1842, R2=1910, Total=3752. Warn if over 250 bubbles per interval.
17-03-18 05:13:56.794 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:13:56.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:57.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:57.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:57.284 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:13:57.284 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:13:57.934 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.983999,
17-03-18 05:13:58.504 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:13:58.504 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:13:58.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:13:58.524 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:13:58.524 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:13:58.524 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:13:58.674 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:13:58.694 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:13:58.694 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:13:58.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:13:58.764 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:13:58.764 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:13:58.864 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:13:58.864 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:13:58.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:13:58.894 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:13:58.894 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:13:58.894 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:13:59.024 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:13:59.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:13:59.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:13:59.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:13:59.964 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:13:59.964 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:00.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:00.124 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:14:00.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:14:00.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:00.284 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:14:00.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:14:00.284 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:14:00.414 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:14:00.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:00.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:00.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:00.904 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:14:00.904 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:14:00.904 -07 000000455 INF: WaitCommand(10000) start
17-03-18 05:14:00.904 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:14:00.904 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:14:01.744 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 05:14:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1845, R2=1913, Total=3758. Warn if over 250 bubbles per interval.
17-03-18 05:14:02.124 -07 000000502 INF: AsyncDelayTimer waited 1215ms
17-03-18 05:14:02.124 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-18 05:14:02.154 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:14:02.154 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:14:02.284 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:14:02.324 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:03.294 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.996267,
17-03-18 05:14:03.854 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:03.884 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:04.304 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:04.334 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:04.334 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:14:04.334 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:14:04.334 -07 000000502 INF: ===================  ===================
17-03-18 05:14:06.744 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1845, R2=1913, Total=3758. Warn if over 250 bubbles per interval.
17-03-18 05:14:08.654 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.014009,
17-03-18 05:14:10.914 -07 000000455 INF: WaitCommand(10000) end
17-03-18 05:14:10.914 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:10.914 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:14:10.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:10.954 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:14:10.954 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:14:10.954 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:14:11.084 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:14:11.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:11.744 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:14:11.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1845, R2=1914, Total=3759. Warn if over 250 bubbles per interval.
17-03-18 05:14:14.014 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.014009,
17-03-18 05:14:16.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 05:14:16.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:17.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:17.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:17.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:17.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:18.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:18.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:18.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:18.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:19.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:19.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:19.084 -07 000000610 INF: LanePump: Waited 7961 ms for pump motion to complete
17-03-18 05:14:19.084 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:19.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:19.244 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:14:19.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:14:19.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:19.374 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.003063,
17-03-18 05:14:19.404 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:14:19.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:14:19.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:14:19.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:14:19.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:19.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:20.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:20.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:14:20.024 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:14:21.244 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:14:21.244 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:14:21.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:14:21.264 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:14:21.264 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:14:21.264 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:14:21.474 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:14:21.494 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:14:21.494 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:14:21.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:14:21.564 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:14:21.564 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:14:21.664 -07 000000610 INF: =================== Cycle #135, Pumping Reagent IMT (1) ===================
17-03-18 05:14:21.664 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:14:21.664 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:21.694 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:14:21.694 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:14:21.694 -07 000000610 INF: =================== Cycle #135, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:14:21.744 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:21.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:21.824 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:14:21.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:23.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:23.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:23.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:23.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:23.784 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:14:23.784 -07 000000610 INF: =================== Cycle #135, Pumping Reagent IMT (1) ===================
17-03-18 05:14:23.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:23.944 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:14:23.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:14:24.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:24.104 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:14:24.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:14:24.104 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:14:24.234 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:14:24.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:24.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:24.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:24.724 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:14:24.724 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:14:24.734 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.014009,
17-03-18 05:14:25.944 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:14:25.944 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:14:25.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:14:25.964 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:14:25.964 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:14:25.964 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:14:26.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:14:26.214 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:14:26.214 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:14:26.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:14:26.284 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:14:26.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:14:26.384 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:26.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:14:26.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:26.414 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:14:26.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:14:26.414 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:14:26.544 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:14:26.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:26.744 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:26.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:27.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:27.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:27.484 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:14:27.484 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:27.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:27.644 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:14:27.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:14:27.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:27.804 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:14:27.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:14:27.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:14:27.934 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:14:27.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:28.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:28.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:28.424 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:14:28.424 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:14:28.424 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 65° ===================
17-03-18 05:14:28.424 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:14:28.424 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:14:28.424 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:14:28.434 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:14:28.434 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:14:28.434 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 05:14:28.444 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:14:28.444 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 65° ===================
17-03-18 05:14:28.444 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:14:28.444 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:14:30.094 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.009895,
17-03-18 05:14:31.744 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:35.454 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.024884,
17-03-18 05:14:36.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:40.814 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.004458,
17-03-18 05:14:41.744 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:46.174 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.993549,
17-03-18 05:14:46.744 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:51.534 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.99219,
17-03-18 05:14:51.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:51.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:56.744 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:14:56.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:14:56.894 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.98264,
17-03-18 05:14:58.454 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:14:58.454 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:58.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:14:58.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:58.584 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:14:58.584 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:14:58.584 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:14:58.714 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:14:58.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:14:59.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:14:59.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:14:59.324 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:14:59.324 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:14:59.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:59.484 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:14:59.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:14:59.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:14:59.644 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:14:59.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:14:59.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:14:59.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:14:59.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:00.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:00.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:00.264 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:15:00.264 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:15:00.264 -07 000000608 INF: WaitCommand(30000) start
17-03-18 05:15:00.264 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:15:00.264 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:15:01.484 -07 000000382 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:15:01.484 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-18 05:15:01.514 -07 000000382 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:15:01.514 -07 000000382 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:15:01.644 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:15:01.684 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:01.744 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:02.254 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.996267,
17-03-18 05:15:04.024 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:04.054 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:04.474 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:04.504 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:04.504 -07 000000382 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:15:04.504 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:15:04.504 -07 000000382 INF: ===================  ===================
17-03-18 05:15:06.744 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:07.614 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.005817,
17-03-18 05:15:11.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:11.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:12.974 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.975845,
17-03-18 05:15:16.744 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:16.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:18.334 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.999021,
17-03-18 05:15:21.744 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:21.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:23.694 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.007176,
17-03-18 05:15:26.744 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:26.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:29.054 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.005817,
17-03-18 05:15:30.274 -07 000000608 INF: WaitCommand(30000) end
17-03-18 05:15:30.274 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 22° ===================
17-03-18 05:15:30.274 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:15:30.274 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:15:30.274 -07 000000579 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:15:30.284 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:15:30.284 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:15:30.284 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 05:15:30.294 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:30.294 -07 000000610 INF: =================== Cycle #135, Flow Cell Temp 22° ===================
17-03-18 05:15:30.294 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:15:30.294 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:15:30.294 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:15:30.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:30.324 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:15:30.324 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:15:30.324 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:15:30.454 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:15:30.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:31.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1847, R2=1916, Total=3763. Warn if over 250 bubbles per interval.
17-03-18 05:15:33.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:33.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:34.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:34.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:34.414 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.977204,
17-03-18 05:15:34.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:34.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:34.554 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:15:34.554 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:15:34.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:34.714 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:15:34.714 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:15:34.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:34.874 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:15:34.874 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:15:34.874 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:15:35.004 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:15:35.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:35.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:35.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:35.494 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:15:35.494 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:15:36.714 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:15:36.714 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:15:36.714 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:15:36.734 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:15:36.734 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:15:36.734 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:15:36.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:15:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:15:36.884 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:15:36.904 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:15:36.904 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:15:36.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:15:36.974 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:15:36.974 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:15:37.074 -07 000000610 INF: =================== Cycle #135, Pumping Reagent USM (2) ===================
17-03-18 05:15:37.074 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:15:37.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:37.104 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:15:37.104 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:15:37.104 -07 000000610 INF: =================== Cycle #135, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:15:37.234 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:15:37.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:38.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:38.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:39.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:39.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:39.194 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:15:39.194 -07 000000610 INF: =================== Cycle #135, Pumping Reagent USM (2) ===================
17-03-18 05:15:39.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:39.354 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:15:39.354 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:15:39.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:39.514 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:15:39.514 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:15:39.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:15:39.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:15:39.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:39.774 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.955391,
17-03-18 05:15:40.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:40.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:40.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:15:40.134 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:15:41.354 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:15:41.354 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:15:41.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:15:41.374 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:15:41.374 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:15:41.374 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:15:41.524 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:15:41.544 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:15:41.544 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:15:41.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:15:41.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:15:41.614 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:15:41.714 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:15:41.714 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:15:41.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:41.744 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:15:41.744 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:15:41.744 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:15:41.744 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:41.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:15:41.874 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:15:41.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:42.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:42.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:42.814 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 05:15:42.814 -07 000000610 INF: =================== Cycle #135, Pumping Reagent PR2 (3) ===================
17-03-18 05:15:42.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:42.974 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:15:42.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:15:43.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:15:43.134 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:15:43.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:15:43.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:15:43.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:15:43.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:43.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:43.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:43.754 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:15:43.754 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:15:43.754 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:15:43.754 -07 000000382 INF: WaitCommand(10000) start
17-03-18 05:15:43.754 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:15:44.974 -07 000000501 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:15:44.974 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-18 05:15:45.004 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:15:45.004 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:15:45.134 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:15:45.134 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.98264,
17-03-18 05:15:45.174 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:46.704 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:46.734 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:15:46.744 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:46.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:15:47.154 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 05:15:47.184 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:15:47.184 -07 000000501 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-18 05:15:47.184 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:15:47.184 -07 000000501 INF: ===================  ===================
17-03-18 05:15:50.494 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.996267,
17-03-18 05:15:51.744 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:51.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:15:53.764 -07 000000382 INF: WaitCommand(10000) end
17-03-18 05:15:53.764 -07 000000610 INF: =================== Cycle #135, Imaging ===================
17-03-18 05:15:53.764 -07 000000610 INF: Imaging Cycle 135: ScanTilesCommand Cycle 135 time start.
17-03-18 05:15:53.764 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:15:53.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:15:53.794 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:15:53.794 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:15:53.794 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:15:54.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:15:54.114 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:15:54.114 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:15:54.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:15:54.184 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:15:54.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:15:54.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:15:54.184 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:15:54.184 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:15:54.184 -07 000000581 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:15:54.194 -07 000000382 INF: FPGA: Recv EXLED1ON 
17-03-18 05:15:54.194 -07 000000581 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:15:54.194 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:15:54.194 -07 000000606 INF: FPGA: Recv EXLED1ADCR 23159
17-03-18 05:15:54.204 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:54.204 -07 000000581 INF: RedLED: Using Red data: Photodiode ADC 23159 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-18 05:15:54.204 -07 000000581 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:15:54.204 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:15:54.214 -07 000000581 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:54.214 -07 000000581 INF: RedLED: LED was on for 19 ms
17-03-18 05:15:54.214 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 05:15:54.214 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:15:54.214 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:15:54.214 -07 000000581 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:15:54.214 -07 000000474 INF: FPGA: Recv EXLED2ON 
17-03-18 05:15:54.224 -07 000000581 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:15:54.224 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:15:54.224 -07 000000447 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 05:15:54.234 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:54.234 -07 000000581 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 05:15:54.234 -07 000000581 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:15:54.234 -07 000000579 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:15:54.244 -07 000000581 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:54.244 -07 000000581 INF: GreenLED: LED was on for 19 ms
17-03-18 05:15:54.244 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:15:54.244 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:15:54.244 -07 000000479 INF: FPGA: Recv EMCUR 
17-03-18 05:15:54.254 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:15:54.254 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:15:54.754 -07 000000626 INF: FPGA: Recv EMOUT
17-03-18 05:15:54.754 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:15:54.754 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:15:54.754 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 05:15:54.764 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:15:54.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:15:54.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126638352546486. ------
17-03-18 05:15:54.764 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:15:54.764 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17841 mm
17-03-18 05:15:54.764 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:15:54.764 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:15:54.764 -07 000000581 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 05:15:54.764 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38973, sync = True, waitForSettling = False)
17-03-18 05:15:54.764 -07 000000480 INF: Z Motor: Moving to -0.178407 mm, started at -0.126638 mm, distance = -51.77 um
17-03-18 05:15:54.774 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:15:54.774 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:15:54.774 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:15:54.774 -07 000000447 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:15:54.784 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:15:54.784 -07 000000581 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:15:54.784 -07 000000581 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:15:54.784 -07 000000581 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:15:54.784 -07 000000480 INF: FPGA: Xmit ZDACW 38973\n [Z Motor]
17-03-18 05:15:54.784 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:15:54.794 -07 000000480 INF: FPGA: 'ZDACW 38973' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:15:54.794 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:15:54.804 -07 000000581 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:15:54.814 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:15:54.814 -07 000000626 INF: FPGA: Recv ZDACR 38973
17-03-18 05:15:54.824 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:15:54.824 -07 000000480 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:15:54.994 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:15:54.994 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 05:15:55.854 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.997626,
17-03-18 05:15:56.484 -07 000000626 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 05:15:56.484 -07 000000581 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1707 ms overall
17-03-18 05:15:56.484 -07 000000581 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:15:56.484 -07 000000581 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24778 steps (15.486 mm). Slippage = 0.019 mm (0.00%).
17-03-18 05:15:56.484 -07 000000581 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1707 ms, distance = 15.468 mm, average velocity = 9.061 mm/sec
17-03-18 05:15:56.744 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:15:56.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:15:59.334 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:15:59.334 -07 000000625 INF: FPGA: Recv YRDPOS 122694
17-03-18 05:15:59.344 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:15:59.344 -07 000000581 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:15:59.374 -07 000000581 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:15:59.374 -07 000000581 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 05:15:59.374 -07 000000581 INF: Y Motor: Moved to 59.9092 after 4603 ms
17-03-18 05:15:59.374 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178407 mm (DAC = 38973)
17-03-18 05:15:59.374 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.374 -07 000000424 INF: FPGA: Recv ZSGSRD 37061
17-03-18 05:15:59.384 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:15:59.384 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.384 -07 000000512 INF: FPGA: Recv ZSGSRD 37065
17-03-18 05:15:59.394 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:15:59.394 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.394 -07 000000626 INF: FPGA: Recv ZSGSRD 37057
17-03-18 05:15:59.404 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.404 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.404 -07 000000447 INF: FPGA: Recv ZSGSRD 37061
17-03-18 05:15:59.414 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.414 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.414 -07 000000502 INF: FPGA: Recv ZSGSRD 37060
17-03-18 05:15:59.424 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.424 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.424 -07 000000479 INF: FPGA: Recv ZSGSRD 37059
17-03-18 05:15:59.434 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.434 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.434 -07 000000512 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:15:59.444 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.444 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.444 -07 000000626 INF: FPGA: Recv ZSGSRD 37059
17-03-18 05:15:59.454 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.454 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.454 -07 000000606 INF: FPGA: Recv ZSGSRD 37062
17-03-18 05:15:59.464 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.464 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:15:59.464 -07 000000618 INF: FPGA: Recv ZSGSRD 37063
17-03-18 05:15:59.474 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.474 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:15:59.474 -07 000000501 INF: FPGA: Recv ZPIEZORD 33262
17-03-18 05:15:59.484 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:15:59.484 -07 000000461 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V.
17-03-18 05:15:59.484 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37061 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37061 (-177.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37057 (-177.5 uncal um), Max = 37065 (-177.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:15:59.484 -07 000000461 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37061, posNoise = 4, negNoise = 4
17-03-18 05:15:59.484 -07 000000461 INF: Z Motor: After move to -0.178407, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:15:59.484 -07 000000461 INF: Z Motor: Settle wait time = 4608 ms, measure time = 104 ms (allowed 150 ms), total time = 4712 ms
17-03-18 05:15:59.484 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:15:59.534 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 05:15:59.534 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:15:59.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:15:59.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:15:59.534 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:15:59.534 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:15:59.534 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:15:59.534 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:15:59.534 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:15:59.534 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:15:59.564 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:15:59.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:15:59.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:15:59.564 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:15:59.574 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:15:59.574 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 05:15:59.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:15:59.624 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:15:59.924 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:15:59.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:15:59.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:15:59.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 577041648, 0x0, 559484976) start.
17-03-18 05:15:59.964 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:15:59.964 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:15:59.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:16:00.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 577041648, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:16:00.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:00.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:16:00.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:16:00.164 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:00.164 -07 000000618 INF: Image SNR check: start
17-03-18 05:16:00.164 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:00.174 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:00.174 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:16:00.174 -07 000000618 INF: Image SNR check: pass  [peak (Max-Min)=134.47]
17-03-18 05:16:00.174 -07 000000618 INF: Autofocus start
17-03-18 05:16:00.174 -07 000000618 INF: MeasureProfile start
17-03-18 05:16:00.184 -07 000000618 INF: MeasureProfile done
17-03-18 05:16:00.184 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:16:00.184 -07 000000618 INF: Autofocus finished
17-03-18 05:16:00.374 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:16:00.374 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:16:00.374 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178411078196938. ----------
17-03-18 05:16:00.374 -07 000000610 INF: Cycle	135	Tile	1	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:00.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37488, sync = True, waitForSettling = True)
17-03-18 05:16:00.384 -07 000000610 INF: Z Motor: Moving to -0.171609 mm, started at -0.178411 mm, distance = 6.80 um
17-03-18 05:16:00.384 -07 000000610 INF: FPGA: Xmit ZDACW 37488\n [Z Motor]
17-03-18 05:16:00.384 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:16:00.394 -07 000000610 INF: FPGA: 'ZDACW 37488' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:00.394 -07 000000626 INF: FPGA: Recv ZDACR 37488
17-03-18 05:16:00.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:00.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.554 -07 000000502 INF: FPGA: Recv ZSGSRD 35998
17-03-18 05:16:00.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:00.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.564 -07 000000480 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:16:00.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.574 -07 000000512 INF: FPGA: Recv ZSGSRD 36012
17-03-18 05:16:00.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.584 -07 000000606 INF: FPGA: Recv ZSGSRD 36003
17-03-18 05:16:00.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35998
17-03-18 05:16:00.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.604 -07 000000447 INF: FPGA: Recv ZSGSRD 36007
17-03-18 05:16:00.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:00.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.614 -07 000000606 INF: FPGA: Recv ZSGSRD 36009
17-03-18 05:16:00.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.624 -07 000000501 INF: FPGA: Recv ZSGSRD 36000
17-03-18 05:16:00.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.634 -07 000000382 INF: FPGA: Recv ZSGSRD 36004
17-03-18 05:16:00.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:00.644 -07 000000474 INF: FPGA: Recv ZSGSRD 36005
17-03-18 05:16:00.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:00.654 -07 000000569 INF: FPGA: Recv ZPIEZORD 31842
17-03-18 05:16:00.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:00.664 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.2 V.
17-03-18 05:16:00.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35998 (-170.7 uncal um), Max = 36012 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:00.664 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 8, negNoise = 6
17-03-18 05:16:00.664 -07 000000610 INF: Z Motor: After move to -0.171609, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:00.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:16:00.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:00.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:00.664 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:00.664 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:00.664 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:00.664 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:00.664 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:00.664 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:00.664 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:00.664 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:00.664 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:00.664 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:16:00.664 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:00.664 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:00.684 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:16:00.684 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:16:00.684 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:16:00.694 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:00.694 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:16:00.694 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:00.704 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:16:00.704 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 05:16:00.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37665 150\n [Camera]
17-03-18 05:16:00.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:01.214 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.039839,
17-03-18 05:16:01.344 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:01.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:01.344 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:01.344 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:01.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:01.344 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:01.354 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:01.354 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:16:01.354 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:01.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 05:16:01.534 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37665 820
17-03-18 05:16:01.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:01.744 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:01.744 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:16:01.744 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:16:01.744 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:01.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:01.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:16:01.754 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:16:01.754 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:01.754 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:01.754 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:16:01.754 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:01.764 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:16:01.894 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:01.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:01.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:01.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:01.894 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:01.894 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:02.034 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:02.034 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:16:02.034 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:02.034 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:16:02.084 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:16:02.084 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:02.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37665 150' command took 2 ms to send, 1367 ms to get response, and 1378 ms overall
17-03-18 05:16:02.084 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171839
17-03-18 05:16:02.084 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17184 mm
17-03-18 05:16:02.084 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:02.094 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:16:02.094 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 05:16:02.094 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:02.094 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37538, sync = True, waitForSettling = False)
17-03-18 05:16:02.094 -07 000000461 INF: Z Motor: Moving to -0.171838 mm, started at -0.171621 mm, distance = -0.22 um
17-03-18 05:16:02.094 -07 000000618 INF: FPGA: Recv YRDPOS 122694
17-03-18 05:16:02.104 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:16:02.104 -07 000000626 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:02.104 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:02.104 -07 000000626 INF: Y Motor: Moving 1333 steps0
17-03-18 05:16:02.104 -07 000000461 INF: FPGA: Xmit ZDACW 37538\n [Z Motor]
17-03-18 05:16:02.104 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:16:02.114 -07 000000461 INF: FPGA: 'ZDACW 37538' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:16:02.114 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:02.114 -07 000000480 INF: FPGA: Recv ZDACR 37538
17-03-18 05:16:02.124 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:02.124 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:02.124 -07 000000461 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 05:16:02.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:02.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:16:02.414 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:02.424 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:16:02.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:16:02.424 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:16:02.424 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:02.424 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 05:16:02.434 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:16:02.434 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 05:16:02.494 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:16:02.494 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:16:02.534 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:02.544 -07 000000461 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:16:02.544 -07 000000626 INF: FPGA: 'YRDPOS' command took 1 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:16:02.544 -07 000000626 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:02.544 -07 000000626 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:16:02.544 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.099 mm/sec
17-03-18 05:16:03.494 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:03.494 -07 000000618 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:16:03.504 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:03.504 -07 000000626 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:03.534 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:03.534 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:03.534 -07 000000626 INF: Y Motor: Moved to 60.7319 after 1440 ms (table move)
17-03-18 05:16:03.534 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171838 mm (DAC = 37538)
17-03-18 05:16:03.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.534 -07 000000474 INF: FPGA: Recv ZSGSRD 36041
17-03-18 05:16:03.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:03.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.544 -07 000000569 INF: FPGA: Recv ZSGSRD 36038
17-03-18 05:16:03.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.554 -07 000000424 INF: FPGA: Recv ZSGSRD 36047
17-03-18 05:16:03.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.564 -07 000000455 INF: FPGA: Recv ZSGSRD 36038
17-03-18 05:16:03.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.574 -07 000000447 INF: FPGA: Recv ZSGSRD 36042
17-03-18 05:16:03.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.584 -07 000000461 INF: FPGA: Recv ZSGSRD 36036
17-03-18 05:16:03.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.594 -07 000000382 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:16:03.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.604 -07 000000502 INF: FPGA: Recv ZSGSRD 36045
17-03-18 05:16:03.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.614 -07 000000606 INF: FPGA: Recv ZSGSRD 36035
17-03-18 05:16:03.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.624 -07 000000382 INF: FPGA: Recv ZSGSRD 36049
17-03-18 05:16:03.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:03.634 -07 000000424 INF: FPGA: Recv ZPIEZORD 31906
17-03-18 05:16:03.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.644 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.1 V.
17-03-18 05:16:03.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36041 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36040 (-171.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36035 (-170.9 uncal um), Max = 36049 (-171.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:03.644 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36041, posNoise = 8, negNoise = 6
17-03-18 05:16:03.644 -07 000000610 INF: Z Motor: After move to -0.171838, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:03.644 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-18 05:16:03.644 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:03.694 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 05:16:03.694 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:03.694 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.171858381812342. ----------
17-03-18 05:16:03.694 -07 000000610 INF: Cycle	135	Tile	2	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:03.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37362, sync = True, waitForSettling = True)
17-03-18 05:16:03.694 -07 000000610 INF: Z Motor: Moving to -0.171032 mm, started at -0.171858 mm, distance = 0.83 um
17-03-18 05:16:03.694 -07 000000610 INF: FPGA: Xmit ZDACW 37362\n [Z Motor]
17-03-18 05:16:03.694 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:16:03.704 -07 000000610 INF: FPGA: 'ZDACW 37362' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:03.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:03.704 -07 000000424 INF: FPGA: Recv ZDACR 37362
17-03-18 05:16:03.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:03.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:16:03.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:03.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.874 -07 000000581 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:16:03.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.884 -07 000000474 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:16:03.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.894 -07 000000579 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:16:03.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.904 -07 000000626 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:16:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.914 -07 000000480 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:16:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.924 -07 000000581 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:16:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:16:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.944 -07 000000512 INF: FPGA: Recv ZSGSRD 35912
17-03-18 05:16:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:03.954 -07 000000424 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:16:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:03.964 -07 000000606 INF: FPGA: Recv ZPIEZORD 31708
17-03-18 05:16:03.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:03.974 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.3 V.
17-03-18 05:16:03.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35915 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35910 (-170.1 uncal um), Max = 35919 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:03.974 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35915, posNoise = 4, negNoise = 5
17-03-18 05:16:03.974 -07 000000610 INF: Z Motor: After move to -0.171032, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:03.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:16:03.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:03.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:03.974 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:03.974 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:03.974 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:03.974 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:03.974 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:03.974 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:03.974 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:03.974 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:03.974 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:03.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:03.984 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:16:03.984 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:03.984 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:16:03.984 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:03.994 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:16:03.994 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:16:03.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:16:03.994 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:16:04.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37538 150\n [Camera]
17-03-18 05:16:04.204 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:04.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:04.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:04.634 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:04.634 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:04.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:16:04.634 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:04.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:04.644 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:04.644 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:04.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:16:04.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37538 820
17-03-18 05:16:04.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:05.014 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:05.024 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:16:05.024 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:05.024 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:05.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:16:05.024 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:16:05.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:05.034 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:16:05.034 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:05.034 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:16:05.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:05.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:05.184 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:05.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:05.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:16:05.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:05.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:05.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:05.194 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:05.194 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:16:05.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:05.384 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:05.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37538 150' command took 2 ms to send, 1370 ms to get response, and 1380 ms overall
17-03-18 05:16:05.384 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171835
17-03-18 05:16:05.384 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17184 mm
17-03-18 05:16:05.384 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:05.384 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:16:05.384 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:16:05.384 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37537, sync = True, waitForSettling = False)
17-03-18 05:16:05.384 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:05.384 -07 000000569 INF: Z Motor: Moving to -0.171833 mm, started at -0.171049 mm, distance = -0.78 um
17-03-18 05:16:05.384 -07 000000455 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:16:05.394 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:05.394 -07 000000424 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:05.394 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:05.394 -07 000000424 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:16:05.394 -07 000000569 INF: FPGA: Xmit ZDACW 37537\n [Z Motor]
17-03-18 05:16:05.394 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:16:05.404 -07 000000569 INF: FPGA: 'ZDACW 37537' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:16:05.404 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:05.404 -07 000000479 INF: FPGA: Recv ZDACR 37537
17-03-18 05:16:05.414 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:05.414 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:05.414 -07 000000569 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 05:16:05.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:16:05.594 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:16:05.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:05.594 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:16:05.594 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:16:05.594 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:05.594 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:05.594 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:16:05.604 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:05.604 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:16:05.784 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:16:05.784 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:16:05.834 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:05.844 -07 000000579 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:16:05.854 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:05.854 -07 000000424 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:05.854 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:16:05.854 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 05:16:06.574 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.050752,
17-03-18 05:16:06.744 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:06.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:06.804 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:06.804 -07 000000467 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:16:06.814 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:06.814 -07 000000424 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:06.844 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:06.844 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:06.844 -07 000000424 INF: Y Motor: Moved to 61.5625 after 1456 ms (table move)
17-03-18 05:16:06.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171833 mm (DAC = 37537)
17-03-18 05:16:06.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.844 -07 000000608 INF: FPGA: Recv ZSGSRD 36035
17-03-18 05:16:06.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:06.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.854 -07 000000474 INF: FPGA: Recv ZSGSRD 36042
17-03-18 05:16:06.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.864 -07 000000626 INF: FPGA: Recv ZSGSRD 36040
17-03-18 05:16:06.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.874 -07 000000579 INF: FPGA: Recv ZSGSRD 36032
17-03-18 05:16:06.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.884 -07 000000424 INF: FPGA: Recv ZSGSRD 36037
17-03-18 05:16:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.894 -07 000000512 INF: FPGA: Recv ZSGSRD 36035
17-03-18 05:16:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.904 -07 000000480 INF: FPGA: Recv ZSGSRD 36040
17-03-18 05:16:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.914 -07 000000382 INF: FPGA: Recv ZSGSRD 36037
17-03-18 05:16:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.924 -07 000000461 INF: FPGA: Recv ZSGSRD 36040
17-03-18 05:16:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:06.934 -07 000000569 INF: FPGA: Recv ZSGSRD 36039
17-03-18 05:16:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:06.944 -07 000000447 INF: FPGA: Recv ZPIEZORD 31890
17-03-18 05:16:06.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:06.954 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.2 V.
17-03-18 05:16:06.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36038 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36038 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36032 (-170.9 uncal um), Max = 36042 (-171.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:06.954 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36038, posNoise = 4, negNoise = 6
17-03-18 05:16:06.954 -07 000000610 INF: Z Motor: After move to -0.171833, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:06.954 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:16:06.954 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:07.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:16:07.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:07.004 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.171839109175916. ----------
17-03-18 05:16:07.004 -07 000000610 INF: Cycle	135	Tile	3	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:07.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37361, sync = True, waitForSettling = True)
17-03-18 05:16:07.004 -07 000000610 INF: Z Motor: Moving to -0.171028 mm, started at -0.171839 mm, distance = 0.81 um
17-03-18 05:16:07.004 -07 000000610 INF: FPGA: Xmit ZDACW 37361\n [Z Motor]
17-03-18 05:16:07.004 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:16:07.014 -07 000000610 INF: FPGA: 'ZDACW 37361' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:07.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:07.014 -07 000000424 INF: FPGA: Recv ZDACR 37361
17-03-18 05:16:07.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:07.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.174 -07 000000608 INF: FPGA: Recv ZSGSRD 35907
17-03-18 05:16:07.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:07.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.184 -07 000000569 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:16:07.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.194 -07 000000455 INF: FPGA: Recv ZSGSRD 35914
17-03-18 05:16:07.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.204 -07 000000461 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:16:07.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.214 -07 000000467 INF: FPGA: Recv ZSGSRD 35908
17-03-18 05:16:07.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.224 -07 000000579 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:16:07.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.234 -07 000000480 INF: FPGA: Recv ZSGSRD 35911
17-03-18 05:16:07.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35917
17-03-18 05:16:07.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35915
17-03-18 05:16:07.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:07.264 -07 000000618 INF: FPGA: Recv ZSGSRD 35913
17-03-18 05:16:07.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:07.274 -07 000000512 INF: FPGA: Recv ZPIEZORD 31714
17-03-18 05:16:07.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:07.284 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.3 V.
17-03-18 05:16:07.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35913 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35907 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:07.284 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 4, negNoise = 6
17-03-18 05:16:07.284 -07 000000610 INF: Z Motor: After move to -0.171028, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:07.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:16:07.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:07.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:07.284 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:07.284 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:07.284 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:07.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:07.284 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:07.284 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:07.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:16:07.284 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:07.284 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:07.284 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:07.294 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:07.294 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:07.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:16:07.294 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:07.304 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:16:07.304 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:16:07.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:16:07.304 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:16:07.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37537 150\n [Camera]
17-03-18 05:16:07.514 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:16:07.944 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:07.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:07.944 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:07.944 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:07.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:16:07.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:07.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:07.944 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:08.074 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:08.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:16:08.134 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37537 820
17-03-18 05:16:08.284 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:08.334 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:16:08.334 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:16:08.334 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:08.334 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:08.334 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:16:08.444 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:16:08.444 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:16:08.444 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:08.454 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:08.454 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 05:16:08.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:08.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:08.494 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:08.494 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:08.494 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:16:08.494 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:08.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:08.504 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:08.504 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:08.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:16:08.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:08.684 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:08.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37537 150' command took 2 ms to send, 1368 ms to get response, and 1378 ms overall
17-03-18 05:16:08.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:16:08.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171036082658196. ------
17-03-18 05:16:08.694 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:08.694 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17728 mm
17-03-18 05:16:08.694 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:08.694 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:08.694 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:16:08.694 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:16:08.704 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:08.704 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:08.704 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38726, sync = True, waitForSettling = False)
17-03-18 05:16:08.704 -07 000000608 INF: Z Motor: Moving to -0.177276 mm, started at -0.171036 mm, distance = -6.24 um
17-03-18 05:16:08.704 -07 000000474 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:16:08.714 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:08.714 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:16:08.714 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:08.714 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:08.714 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:16:08.724 -07 000000608 INF: FPGA: Xmit ZDACW 38726\n [Z Motor]
17-03-18 05:16:08.724 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:16:08.734 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:08.734 -07 000000608 INF: FPGA: 'ZDACW 38726' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:16:08.744 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:08.744 -07 000000382 INF: FPGA: Recv ZDACR 38726
17-03-18 05:16:08.754 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:08.754 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:16:08.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:16:08.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:16:08.884 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:08.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:16:08.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:08.884 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:08.884 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:08.884 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:08.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:16:08.894 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:16:08.914 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:16:08.914 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:16:09.104 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:16:09.104 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:16:09.154 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:09.164 -07 000000579 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:16:09.164 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:16:09.164 -07 000000501 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:09.164 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:16:09.164 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 05:16:10.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:10.114 -07 000000626 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:16:10.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:10.124 -07 000000501 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:10.154 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:10.154 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:10.154 -07 000000501 INF: Y Motor: Moved to 62.3945 after 1452 ms (table move)
17-03-18 05:16:10.154 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177276 mm (DAC = 38726)
17-03-18 05:16:10.154 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36891
17-03-18 05:16:10.164 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:10.164 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.164 -07 000000608 INF: FPGA: Recv ZSGSRD 36889
17-03-18 05:16:10.174 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.174 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.174 -07 000000474 INF: FPGA: Recv ZSGSRD 36883
17-03-18 05:16:10.184 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.184 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.184 -07 000000480 INF: FPGA: Recv ZSGSRD 36886
17-03-18 05:16:10.194 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.194 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.194 -07 000000501 INF: FPGA: Recv ZSGSRD 36883
17-03-18 05:16:10.204 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.204 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.204 -07 000000461 INF: FPGA: Recv ZSGSRD 36875
17-03-18 05:16:10.214 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.214 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36888
17-03-18 05:16:10.224 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.224 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.224 -07 000000626 INF: FPGA: Recv ZSGSRD 36889
17-03-18 05:16:10.234 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.234 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.234 -07 000000447 INF: FPGA: Recv ZSGSRD 36885
17-03-18 05:16:10.244 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.244 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:10.244 -07 000000501 INF: FPGA: Recv ZSGSRD 36885
17-03-18 05:16:10.254 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.254 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:10.254 -07 000000579 INF: FPGA: Recv ZPIEZORD 33045
17-03-18 05:16:10.264 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:10.264 -07 000000479 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.5 V.
17-03-18 05:16:10.264 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36885 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36886 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36875 (-176.3 uncal um), Max = 36891 (-176.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:16:10.264 -07 000000479 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36885, posNoise = 6, negNoise = 10
17-03-18 05:16:10.264 -07 000000479 INF: Z Motor: After move to -0.177276, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:10.264 -07 000000479 INF: Z Motor: Settle wait time = 1454 ms, measure time = 106 ms (allowed 150 ms), total time = 1560 ms
17-03-18 05:16:10.264 -07 000000479 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:10.314 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:16:10.314 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:10.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:10.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:10.314 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:10.314 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:16:10.314 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:10.314 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:10.314 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:10.314 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:16:10.324 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:10.324 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:16:10.334 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:16:10.334 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:16:10.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:16:10.374 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:16:10.674 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:16:10.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:16:10.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:16:10.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576623480, 0x0, 559484976) start.
17-03-18 05:16:10.714 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:16:10.714 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:16:10.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 05:16:10.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576623480, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:16:10.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:10.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:16:10.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:16:10.814 -07 000000569 INF: Autofocus start
17-03-18 05:16:10.814 -07 000000569 INF: MeasureProfile start
17-03-18 05:16:10.814 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:10.814 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:10.824 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:10.824 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:16:10.824 -07 000000569 INF: MeasureProfile done
17-03-18 05:16:10.824 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:16:10.824 -07 000000569 INF: Autofocus finished
17-03-18 05:16:11.024 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:16:11.024 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:16:11.024 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177280416859988. ----------
17-03-18 05:16:11.024 -07 000000610 INF: Cycle	135	Tile	4	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:11.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37223, sync = True, waitForSettling = True)
17-03-18 05:16:11.034 -07 000000610 INF: Z Motor: Moving to -0.170396 mm, started at -0.177280 mm, distance = 6.88 um
17-03-18 05:16:11.034 -07 000000610 INF: FPGA: Xmit ZDACW 37223\n [Z Motor]
17-03-18 05:16:11.034 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:16:11.044 -07 000000610 INF: FPGA: 'ZDACW 37223' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:16:11.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:11.044 -07 000000606 INF: FPGA: Recv ZDACR 37223
17-03-18 05:16:11.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:11.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.204 -07 000000581 INF: FPGA: Recv ZSGSRD 35816
17-03-18 05:16:11.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.214 -07 000000382 INF: FPGA: Recv ZSGSRD 35814
17-03-18 05:16:11.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.224 -07 000000461 INF: FPGA: Recv ZSGSRD 35813
17-03-18 05:16:11.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35813
17-03-18 05:16:11.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:16:11.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.254 -07 000000474 INF: FPGA: Recv ZSGSRD 35818
17-03-18 05:16:11.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.264 -07 000000382 INF: FPGA: Recv ZSGSRD 35814
17-03-18 05:16:11.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.274 -07 000000608 INF: FPGA: Recv ZSGSRD 35815
17-03-18 05:16:11.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.284 -07 000000447 INF: FPGA: Recv ZSGSRD 35815
17-03-18 05:16:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:11.294 -07 000000569 INF: FPGA: Recv ZSGSRD 35814
17-03-18 05:16:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:11.304 -07 000000461 INF: FPGA: Recv ZPIEZORD 31611
17-03-18 05:16:11.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:11.314 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.3 V.
17-03-18 05:16:11.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35813 (-169.5 uncal um), Max = 35819 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:16:11.314 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 4, negNoise = 2
17-03-18 05:16:11.314 -07 000000610 INF: Z Motor: After move to -0.170396, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:11.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:16:11.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:11.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:11.314 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:11.314 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:11.314 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:11.314 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:11.314 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:11.314 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:11.314 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:16:11.314 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:11.314 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:16:11.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:11.314 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:11.314 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:11.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:11.324 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:11.324 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:16:11.324 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:16:11.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:16:11.334 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:16:11.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37400 150\n [Camera]
17-03-18 05:16:11.534 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:11.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:11.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:11.934 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.02213,
17-03-18 05:16:11.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:11.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:11.974 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:11.974 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:11.974 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:16:11.974 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:11.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:11.974 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:11.974 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:11.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:16:12.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37400 820
17-03-18 05:16:12.314 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:12.344 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:16:12.344 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:16:12.344 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:12.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:16:12.344 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:16:12.344 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:12.354 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:12.354 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:12.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:16:12.354 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:16:12.524 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:12.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:12.524 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:12.644 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:12.644 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:16:12.644 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:12.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:12.644 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:12.644 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:12.644 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:16:12.714 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:16:12.714 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:12.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37400 150' command took 2 ms to send, 1373 ms to get response, and 1378 ms overall
17-03-18 05:16:12.714 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.170711
17-03-18 05:16:12.714 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17071 mm
17-03-18 05:16:12.714 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:12.714 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:16:12.714 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37292, sync = True, waitForSettling = False)
17-03-18 05:16:12.714 -07 000000479 INF: Z Motor: Moving to -0.170712 mm, started at -0.170407 mm, distance = -0.31 um
17-03-18 05:16:12.714 -07 000000479 INF: FPGA: Xmit ZDACW 37292\n [Z Motor]
17-03-18 05:16:12.714 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 05:16:12.724 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:16:12.724 -07 000000479 INF: FPGA: 'ZDACW 37292' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:16:12.724 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:12.724 -07 000000606 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:16:12.734 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:16:12.734 -07 000000581 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:12.734 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:12.734 -07 000000581 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:16:12.734 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:12.734 -07 000000608 INF: FPGA: Recv ZDACR 37292
17-03-18 05:16:12.744 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:12.744 -07 000000479 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 05:16:12.744 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:13.044 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:16:13.044 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:16:13.044 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:13.044 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:16:13.044 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:16:13.044 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:13.054 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:13.054 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:16:13.054 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 05:16:13.064 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:16:13.114 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:16:13.114 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:16:13.164 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:13.174 -07 000000569 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:16:13.174 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:16:13.174 -07 000000581 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:13.174 -07 000000581 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:16:13.174 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-18 05:16:14.124 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:14.124 -07 000000626 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:16:14.134 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:14.134 -07 000000581 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:14.164 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:14.164 -07 000000581 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:14.164 -07 000000581 INF: Y Motor: Moved to 63.2227 after 1443 ms (table move)
17-03-18 05:16:14.164 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170712 mm (DAC = 37292)
17-03-18 05:16:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.164 -07 000000382 INF: FPGA: Recv ZSGSRD 35868
17-03-18 05:16:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.174 -07 000000569 INF: FPGA: Recv ZSGSRD 35865
17-03-18 05:16:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.184 -07 000000618 INF: FPGA: Recv ZSGSRD 35867
17-03-18 05:16:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.194 -07 000000461 INF: FPGA: Recv ZSGSRD 35864
17-03-18 05:16:14.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.204 -07 000000467 INF: FPGA: Recv ZSGSRD 35864
17-03-18 05:16:14.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.214 -07 000000447 INF: FPGA: Recv ZSGSRD 35862
17-03-18 05:16:14.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.224 -07 000000608 INF: FPGA: Recv ZSGSRD 35865
17-03-18 05:16:14.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35862
17-03-18 05:16:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.244 -07 000000626 INF: FPGA: Recv ZSGSRD 35863
17-03-18 05:16:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.254 -07 000000502 INF: FPGA: Recv ZSGSRD 35867
17-03-18 05:16:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:14.264 -07 000000501 INF: FPGA: Recv ZPIEZORD 31713
17-03-18 05:16:14.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.274 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.2 V.
17-03-18 05:16:14.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35865 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35864 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35862 (-169.8 uncal um), Max = 35868 (-169.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:16:14.274 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35865, posNoise = 3, negNoise = 3
17-03-18 05:16:14.274 -07 000000610 INF: Z Motor: After move to -0.170712, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:14.274 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:16:14.274 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:14.324 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 05:16:14.324 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:14.334 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.170727720475392. ----------
17-03-18 05:16:14.334 -07 000000610 INF: Cycle	135	Tile	5	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:14.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37115, sync = True, waitForSettling = True)
17-03-18 05:16:14.334 -07 000000610 INF: Z Motor: Moving to -0.169902 mm, started at -0.170728 mm, distance = 0.83 um
17-03-18 05:16:14.334 -07 000000610 INF: FPGA: Xmit ZDACW 37115\n [Z Motor]
17-03-18 05:16:14.334 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:16:14.344 -07 000000610 INF: FPGA: 'ZDACW 37115' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:14.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:14.344 -07 000000479 INF: FPGA: Recv ZDACR 37115
17-03-18 05:16:14.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:14.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35747
17-03-18 05:16:14.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:14.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.514 -07 000000502 INF: FPGA: Recv ZSGSRD 35735
17-03-18 05:16:14.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.524 -07 000000501 INF: FPGA: Recv ZSGSRD 35742
17-03-18 05:16:14.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.534 -07 000000608 INF: FPGA: Recv ZSGSRD 35735
17-03-18 05:16:14.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.544 -07 000000480 INF: FPGA: Recv ZSGSRD 35732
17-03-18 05:16:14.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.554 -07 000000608 INF: FPGA: Recv ZSGSRD 35741
17-03-18 05:16:14.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.564 -07 000000502 INF: FPGA: Recv ZSGSRD 35739
17-03-18 05:16:14.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.574 -07 000000501 INF: FPGA: Recv ZSGSRD 35738
17-03-18 05:16:14.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.584 -07 000000479 INF: FPGA: Recv ZSGSRD 35738
17-03-18 05:16:14.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:14.594 -07 000000480 INF: FPGA: Recv ZSGSRD 35740
17-03-18 05:16:14.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:14.604 -07 000000461 INF: FPGA: Recv ZPIEZORD 31533
17-03-18 05:16:14.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:14.614 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.3 V.
17-03-18 05:16:14.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35739 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35732 (-169.0 uncal um), Max = 35747 (-169.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:14.614 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35739, posNoise = 8, negNoise = 7
17-03-18 05:16:14.614 -07 000000610 INF: Z Motor: After move to -0.169902, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:14.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:16:14.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:14.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:14.614 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:14.614 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:14.614 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:14.614 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:14.614 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:14.614 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:14.614 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:14.614 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:14.614 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:14.614 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:14.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:16:14.624 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:14.624 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:14.624 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:14.634 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:16:14.634 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:16:14.634 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:16:14.634 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:16:14.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37292 150\n [Camera]
17-03-18 05:16:14.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:15.264 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:15.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:15.274 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:15.274 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:15.274 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:16:15.274 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:15.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:15.274 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:15.274 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:15.274 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:16:15.464 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37292 820
17-03-18 05:16:15.614 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:15.644 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:16:15.644 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:16:15.644 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:15.654 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:16:15.654 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:16:15.654 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:15.654 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:15.654 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:16:15.654 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:15.664 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:16:15.824 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:15.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:15.824 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:15.824 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:15.824 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:16:15.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:15.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:15.824 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:15.824 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:15.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:16:16.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:16:16.014 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:16.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37292 150' command took 2 ms to send, 1373 ms to get response, and 1378 ms overall
17-03-18 05:16:16.014 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170270
17-03-18 05:16:16.014 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17027 mm
17-03-18 05:16:16.014 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:16.014 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:16:16.014 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37195, sync = True, waitForSettling = False)
17-03-18 05:16:16.014 -07 000000579 INF: Z Motor: Moving to -0.170268 mm, started at -0.169918 mm, distance = -0.35 um
17-03-18 05:16:16.014 -07 000000579 INF: FPGA: Xmit ZDACW 37195\n [Z Motor]
17-03-18 05:16:16.014 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:16:16.024 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:16.024 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:16:16.024 -07 000000579 INF: FPGA: 'ZDACW 37195' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:16:16.024 -07 000000382 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:16:16.034 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:16:16.034 -07 000000480 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:16.034 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:16.154 -07 000000480 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:16:16.154 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:16.154 -07 000000382 INF: FPGA: Recv ZDACR 37195
17-03-18 05:16:16.164 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:16.164 -07 000000579 INF: FPGA: 'ZDACR' command took 121 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 05:16:16.164 -07 000000579 INF: Z Motor: MoveAbsStepped took 142 ms (did NOT wait for settling yet))
17-03-18 05:16:16.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:16:16.214 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:16:16.214 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:16.224 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:16:16.224 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:16:16.224 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:16.224 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:16.224 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:16:16.224 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:16.234 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:16:16.534 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:16:16.534 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:16:16.584 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:16.594 -07 000000461 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:16:16.594 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:16:16.594 -07 000000480 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:16.594 -07 000000480 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:16:16.594 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-18 05:16:16.744 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:16.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:17.294 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.003063,
17-03-18 05:16:17.544 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:17.544 -07 000000382 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:16:17.554 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:17.554 -07 000000480 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:17.574 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:17.574 -07 000000480 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:17.574 -07 000000480 INF: Y Motor: Moved to 64.0557 after 1562 ms (table move)
17-03-18 05:16:17.584 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170268 mm (DAC = 37195)
17-03-18 05:16:17.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.584 -07 000000455 INF: FPGA: Recv ZSGSRD 35792
17-03-18 05:16:17.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:16:17.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.594 -07 000000501 INF: FPGA: Recv ZSGSRD 35795
17-03-18 05:16:17.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35792
17-03-18 05:16:17.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.614 -07 000000474 INF: FPGA: Recv ZSGSRD 35790
17-03-18 05:16:17.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.624 -07 000000625 INF: FPGA: Recv ZSGSRD 35795
17-03-18 05:16:17.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:17.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.634 -07 000000480 INF: FPGA: Recv ZSGSRD 35795
17-03-18 05:16:17.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.644 -07 000000501 INF: FPGA: Recv ZSGSRD 35793
17-03-18 05:16:17.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.654 -07 000000606 INF: FPGA: Recv ZSGSRD 35797
17-03-18 05:16:17.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.664 -07 000000479 INF: FPGA: Recv ZSGSRD 35793
17-03-18 05:16:17.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.674 -07 000000618 INF: FPGA: Recv ZSGSRD 35795
17-03-18 05:16:17.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:17.684 -07 000000608 INF: FPGA: Recv ZPIEZORD 31649
17-03-18 05:16:17.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.694 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.1 V.
17-03-18 05:16:17.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35794 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35794 (-169.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35790 (-169.4 uncal um), Max = 35797 (-169.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:16:17.694 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35794, posNoise = 3, negNoise = 4
17-03-18 05:16:17.694 -07 000000610 INF: Z Motor: After move to -0.170268, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:17.694 -07 000000610 INF: Z Motor: Settle wait time = 1564 ms, measure time = 108 ms (allowed 150 ms), total time = 1672 ms
17-03-18 05:16:17.694 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:17.744 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1724 ms
17-03-18 05:16:17.744 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:17.744 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.170271601413327. ----------
17-03-18 05:16:17.744 -07 000000610 INF: Cycle	135	Tile	6	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:17.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37019, sync = True, waitForSettling = True)
17-03-18 05:16:17.744 -07 000000610 INF: Z Motor: Moving to -0.169462 mm, started at -0.170272 mm, distance = 0.81 um
17-03-18 05:16:17.744 -07 000000610 INF: FPGA: Xmit ZDACW 37019\n [Z Motor]
17-03-18 05:16:17.744 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:16:17.754 -07 000000610 INF: FPGA: 'ZDACW 37019' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:17.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:17.754 -07 000000467 INF: FPGA: Recv ZDACR 37019
17-03-18 05:16:17.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:17.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.914 -07 000000455 INF: FPGA: Recv ZSGSRD 35669
17-03-18 05:16:17.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:17.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.924 -07 000000625 INF: FPGA: Recv ZSGSRD 35665
17-03-18 05:16:17.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:16:17.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.944 -07 000000474 INF: FPGA: Recv ZSGSRD 35665
17-03-18 05:16:17.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.954 -07 000000512 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:16:17.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.964 -07 000000608 INF: FPGA: Recv ZSGSRD 35673
17-03-18 05:16:17.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.974 -07 000000579 INF: FPGA: Recv ZSGSRD 35663
17-03-18 05:16:17.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.984 -07 000000606 INF: FPGA: Recv ZSGSRD 35671
17-03-18 05:16:17.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:17.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:17.994 -07 000000608 INF: FPGA: Recv ZSGSRD 35660
17-03-18 05:16:18.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:18.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:18.004 -07 000000479 INF: FPGA: Recv ZSGSRD 35667
17-03-18 05:16:18.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:18.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:18.014 -07 000000502 INF: FPGA: Recv ZPIEZORD 31472
17-03-18 05:16:18.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:18.024 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.3 V.
17-03-18 05:16:18.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35668 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35660 (-168.5 uncal um), Max = 35673 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:16:18.024 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35668, posNoise = 5, negNoise = 8
17-03-18 05:16:18.024 -07 000000610 INF: Z Motor: After move to -0.169462, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:18.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:16:18.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:18.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:18.024 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:18.024 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:18.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:18.024 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:18.024 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:18.024 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:18.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:18.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:18.024 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:18.024 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:18.034 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:18.034 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:18.034 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:16:18.034 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:18.044 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:16:18.044 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:18.044 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:16:18.044 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:18.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37195 150\n [Camera]
17-03-18 05:16:18.254 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:18.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:18.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:18.684 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:18.684 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:18.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:18.684 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:18.684 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:18.684 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:16:18.694 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:18.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:16:18.884 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37195 820
17-03-18 05:16:19.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:19.064 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:19.064 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:16:19.064 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:19.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:16:19.074 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 05:16:19.074 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:19.074 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:19.074 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:19.074 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:16:19.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:16:19.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:19.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:19.234 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:19.234 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:19.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:16:19.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:19.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:19.244 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:19.244 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:19.244 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:16:19.424 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:19.424 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:19.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37195 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:16:19.434 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.169816
17-03-18 05:16:19.434 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.16982 mm
17-03-18 05:16:19.434 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:19.434 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:16:19.434 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37096, sync = True, waitForSettling = False)
17-03-18 05:16:19.434 -07 000000382 INF: Z Motor: Moving to -0.169815 mm, started at -0.169462 mm, distance = -0.35 um
17-03-18 05:16:19.434 -07 000000382 INF: FPGA: Xmit ZDACW 37096\n [Z Motor]
17-03-18 05:16:19.434 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:16:19.434 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:16:19.444 -07 000000382 INF: FPGA: 'ZDACW 37096' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:19.444 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:19.444 -07 000000579 INF: FPGA: Recv ZDACR 37096
17-03-18 05:16:19.454 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:19.454 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:19.454 -07 000000382 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 05:16:19.454 -07 000000618 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:16:19.464 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:16:19.464 -07 000000569 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:19.464 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:19.464 -07 000000569 INF: Y Motor: Moving 1339 steps-14
17-03-18 05:16:19.464 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:19.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:16:19.614 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:16:19.614 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:19.624 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:19.624 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:16:19.624 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:19.624 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:19.624 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:19.624 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:19.634 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:16:19.834 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:16:19.834 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 05:16:19.884 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:19.894 -07 000000479 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:16:19.894 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:16:19.894 -07 000000569 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:19.894 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:16:19.894 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.214 mm/sec
17-03-18 05:16:20.844 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:20.844 -07 000000461 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:16:20.854 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:20.854 -07 000000569 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:20.884 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:20.884 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:20.884 -07 000000569 INF: Y Motor: Moved to 64.8774 after 1445 ms (table move)
17-03-18 05:16:20.884 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169815 mm (DAC = 37096)
17-03-18 05:16:20.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.884 -07 000000501 INF: FPGA: Recv ZSGSRD 35731
17-03-18 05:16:20.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:20.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.894 -07 000000479 INF: FPGA: Recv ZSGSRD 35730
17-03-18 05:16:20.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.904 -07 000000626 INF: FPGA: Recv ZSGSRD 35731
17-03-18 05:16:20.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.914 -07 000000581 INF: FPGA: Recv ZSGSRD 35725
17-03-18 05:16:20.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35722
17-03-18 05:16:20.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.934 -07 000000461 INF: FPGA: Recv ZSGSRD 35725
17-03-18 05:16:20.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.944 -07 000000569 INF: FPGA: Recv ZSGSRD 35721
17-03-18 05:16:20.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35723
17-03-18 05:16:20.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.964 -07 000000382 INF: FPGA: Recv ZSGSRD 35722
17-03-18 05:16:20.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:20.974 -07 000000608 INF: FPGA: Recv ZSGSRD 35728
17-03-18 05:16:20.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:20.984 -07 000000461 INF: FPGA: Recv ZPIEZORD 31563
17-03-18 05:16:20.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:20.994 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.2 V.
17-03-18 05:16:20.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35726 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35725 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35721 (-168.9 uncal um), Max = 35731 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:20.994 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35726, posNoise = 5, negNoise = 5
17-03-18 05:16:20.994 -07 000000610 INF: Z Motor: After move to -0.169815, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:20.994 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:16:20.994 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:21.044 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 05:16:21.044 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:21.044 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.169834754987687. ----------
17-03-18 05:16:21.044 -07 000000610 INF: Cycle	135	Tile	7	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:21.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36920, sync = True, waitForSettling = True)
17-03-18 05:16:21.044 -07 000000610 INF: Z Motor: Moving to -0.169009 mm, started at -0.169835 mm, distance = 0.83 um
17-03-18 05:16:21.044 -07 000000610 INF: FPGA: Xmit ZDACW 36920\n [Z Motor]
17-03-18 05:16:21.044 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:16:21.054 -07 000000610 INF: FPGA: 'ZDACW 36920' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:21.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:21.054 -07 000000625 INF: FPGA: Recv ZDACR 36920
17-03-18 05:16:21.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:21.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.214 -07 000000502 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:16:21.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:21.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.224 -07 000000606 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:16:21.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.234 -07 000000447 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:16:21.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.244 -07 000000581 INF: FPGA: Recv ZSGSRD 35592
17-03-18 05:16:21.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.254 -07 000000512 INF: FPGA: Recv ZSGSRD 35597
17-03-18 05:16:21.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.264 -07 000000461 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:16:21.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.274 -07 000000501 INF: FPGA: Recv ZSGSRD 35598
17-03-18 05:16:21.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.284 -07 000000479 INF: FPGA: Recv ZSGSRD 35595
17-03-18 05:16:21.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.294 -07 000000569 INF: FPGA: Recv ZSGSRD 35604
17-03-18 05:16:21.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:21.304 -07 000000474 INF: FPGA: Recv ZSGSRD 35602
17-03-18 05:16:21.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:21.314 -07 000000618 INF: FPGA: Recv ZPIEZORD 31378
17-03-18 05:16:21.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:21.324 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.3 V.
17-03-18 05:16:21.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35600 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35600 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35592 (-168.1 uncal um), Max = 35605 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:16:21.324 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35600, posNoise = 5, negNoise = 8
17-03-18 05:16:21.324 -07 000000610 INF: Z Motor: After move to -0.169009, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:21.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:16:21.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:21.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:21.324 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:21.324 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:21.324 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:21.324 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:21.324 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:21.324 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:21.324 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:21.324 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:21.324 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:21.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:21.334 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:16:21.334 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:21.334 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:21.334 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:21.344 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:16:21.344 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:16:21.344 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:16:21.344 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:21.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37096 150\n [Camera]
17-03-18 05:16:21.554 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:21.744 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:21.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:21.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:21.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:21.984 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:21.984 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:21.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:16:21.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:21.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:21.984 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:21.984 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:21.984 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:16:22.184 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37096 820
17-03-18 05:16:22.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:22.364 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:16:22.364 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:16:22.364 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:22.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:16:22.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:16:22.364 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:22.374 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:22.374 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:22.374 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:22.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:16:22.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:22.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:22.534 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:22.544 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:22.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:16:22.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:22.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:22.544 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:22.544 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:22.544 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:16:22.654 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.979922,
17-03-18 05:16:22.724 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:22.724 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:22.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37096 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:16:22.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:16:22.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169025304257825. ------
17-03-18 05:16:22.734 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:22.734 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17569 mm
17-03-18 05:16:22.734 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:22.734 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:22.734 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38379, sync = True, waitForSettling = False)
17-03-18 05:16:22.734 -07 000000626 INF: Z Motor: Moving to -0.175688 mm, started at -0.169025 mm, distance = -6.66 um
17-03-18 05:16:22.734 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:16:22.734 -07 000000608 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 05:16:22.744 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:22.744 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:22.744 -07 000000455 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:16:22.754 -07 000000608 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:16:22.754 -07 000000608 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:22.754 -07 000000608 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:22.754 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:16:22.754 -07 000000626 INF: FPGA: Xmit ZDACW 38379\n [Z Motor]
17-03-18 05:16:22.754 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:16:22.764 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:16:22.764 -07 000000626 INF: FPGA: 'ZDACW 38379' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:16:22.774 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:22.784 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:22.784 -07 000000461 INF: FPGA: Recv ZDACR 38379
17-03-18 05:16:22.794 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:16:22.794 -07 000000626 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:16:22.914 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:16:22.914 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:16:22.914 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:22.924 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:22.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:16:22.924 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:16:22.924 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:22.924 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:22.924 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:22.924 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:16:22.964 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:16:22.964 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 05:16:23.144 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:16:23.144 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:16:23.204 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:23.204 -07 000000382 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:16:23.214 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:23.214 -07 000000608 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:23.214 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:16:23.214 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:16:24.164 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:24.164 -07 000000626 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:16:24.174 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:24.174 -07 000000608 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:24.214 -07 000000608 INF: Y Motor: After move to 65.722610, error = -0.010208, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:24.214 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:24.214 -07 000000608 INF: Y Motor: Moved to 65.7124 after 1471 ms (table move)
17-03-18 05:16:24.214 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175688 mm (DAC = 38379)
17-03-18 05:16:24.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.214 -07 000000447 INF: FPGA: Recv ZSGSRD 36641
17-03-18 05:16:24.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:24.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.224 -07 000000581 INF: FPGA: Recv ZSGSRD 36634
17-03-18 05:16:24.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.234 -07 000000569 INF: FPGA: Recv ZSGSRD 36631
17-03-18 05:16:24.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.244 -07 000000625 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:16:24.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.254 -07 000000479 INF: FPGA: Recv ZSGSRD 36643
17-03-18 05:16:24.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.264 -07 000000447 INF: FPGA: Recv ZSGSRD 36628
17-03-18 05:16:24.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36646
17-03-18 05:16:24.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.284 -07 000000512 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:16:24.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.294 -07 000000467 INF: FPGA: Recv ZSGSRD 36639
17-03-18 05:16:24.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:24.304 -07 000000424 INF: FPGA: Recv ZSGSRD 36637
17-03-18 05:16:24.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.314 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:24.314 -07 000000626 INF: FPGA: Recv ZPIEZORD 32754
17-03-18 05:16:24.324 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:24.324 -07 000000480 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.6 V.
17-03-18 05:16:24.324 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36637 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36628 (-174.7 uncal um), Max = 36646 (-174.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:16:24.324 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 9, negNoise = 9
17-03-18 05:16:24.324 -07 000000480 INF: Z Motor: After move to -0.175688, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:24.324 -07 000000480 INF: Z Motor: Settle wait time = 1475 ms, measure time = 109 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:16:24.324 -07 000000480 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:24.374 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 05:16:24.374 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:24.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:24.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:24.374 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:24.374 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:16:24.374 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:24.374 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:24.374 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:24.374 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:16:24.374 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:24.374 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:16:24.394 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:16:24.394 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:16:24.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:16:24.444 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:16:24.744 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:16:24.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:16:24.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:16:24.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:16:24.784 -07 000000625 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:16:24.784 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:16:24.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 05:16:24.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:16:24.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:24.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:16:24.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:16:24.884 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:24.884 -07 000000480 INF: Autofocus start
17-03-18 05:16:24.884 -07 000000480 INF: MeasureProfile start
17-03-18 05:16:24.884 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:24.894 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:24.894 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:16:24.894 -07 000000480 INF: MeasureProfile done
17-03-18 05:16:24.894 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:16:24.894 -07 000000480 INF: Autofocus finished
17-03-18 05:16:25.094 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:16:25.094 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:16:25.094 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71240234375, Z-position -0.175687212248831. ----------
17-03-18 05:16:25.094 -07 000000610 INF: Cycle	135	Tile	8	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:25.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36912, sync = True, waitForSettling = True)
17-03-18 05:16:25.104 -07 000000610 INF: Z Motor: Moving to -0.168972 mm, started at -0.175687 mm, distance = 6.71 um
17-03-18 05:16:25.104 -07 000000610 INF: FPGA: Xmit ZDACW 36912\n [Z Motor]
17-03-18 05:16:25.104 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:16:25.114 -07 000000610 INF: FPGA: 'ZDACW 36912' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:25.114 -07 000000625 INF: FPGA: Recv ZDACR 36912
17-03-18 05:16:25.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:25.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.274 -07 000000467 INF: FPGA: Recv ZSGSRD 35585
17-03-18 05:16:25.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:25.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.284 -07 000000579 INF: FPGA: Recv ZSGSRD 35598
17-03-18 05:16:25.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:16:25.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35596
17-03-18 05:16:25.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:16:25.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.324 -07 000000480 INF: FPGA: Recv ZSGSRD 35589
17-03-18 05:16:25.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.334 -07 000000461 INF: FPGA: Recv ZSGSRD 35598
17-03-18 05:16:25.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.344 -07 000000382 INF: FPGA: Recv ZSGSRD 35595
17-03-18 05:16:25.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.354 -07 000000447 INF: FPGA: Recv ZSGSRD 35594
17-03-18 05:16:25.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:25.364 -07 000000382 INF: FPGA: Recv ZSGSRD 35593
17-03-18 05:16:25.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:25.374 -07 000000618 INF: FPGA: Recv ZPIEZORD 31415
17-03-18 05:16:25.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:25.384 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.2 V.
17-03-18 05:16:25.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35594 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35585 (-168.1 uncal um), Max = 35598 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:16:25.384 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35594, posNoise = 4, negNoise = 9
17-03-18 05:16:25.384 -07 000000610 INF: Z Motor: After move to -0.168972, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:25.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:16:25.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:25.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:25.384 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:25.384 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:25.384 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:25.384 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:25.384 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:25.384 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:25.384 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:16:25.384 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:25.384 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:16:25.384 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:25.384 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:25.384 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:25.394 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:25.394 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:25.394 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:16:25.394 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:16:25.394 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:16:25.394 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:16:25.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37089 150\n [Camera]
17-03-18 05:16:25.594 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:26.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:26.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:26.034 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:26.034 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:26.034 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:16:26.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:26.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:26.034 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:26.034 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:26.034 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:16:26.224 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37089 820
17-03-18 05:16:26.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:26.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:16:26.424 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:16:26.424 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:26.424 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:16:26.424 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:16:26.424 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:26.424 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:26.424 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:26.424 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:16:26.434 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:16:26.584 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:26.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:26.584 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:26.584 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:26.584 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:16:26.594 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:26.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:26.594 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:26.594 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:26.594 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:16:26.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:26.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:26.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:26.784 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:26.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37089 150' command took 2 ms to send, 1371 ms to get response, and 1381 ms overall
17-03-18 05:16:26.784 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169437
17-03-18 05:16:26.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16944 mm
17-03-18 05:16:26.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:26.784 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:16:26.784 -07 000000447 INF: Y Motor: Moving to 66.5526 mm, started at 65.7124 mm, delta = 0.8402 mm
17-03-18 05:16:26.784 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:26.784 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37013, sync = True, waitForSettling = False)
17-03-18 05:16:26.784 -07 000000569 INF: Z Motor: Moving to -0.169435 mm, started at -0.168987 mm, distance = -0.45 um
17-03-18 05:16:26.784 -07 000000579 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:16:26.794 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:26.794 -07 000000447 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:26.794 -07 000000569 INF: FPGA: Xmit ZDACW 37013\n [Z Motor]
17-03-18 05:16:26.794 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:16:26.794 -07 000000447 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:26.794 -07 000000447 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:16:26.804 -07 000000569 INF: FPGA: 'ZDACW 37013' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:16:26.804 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:26.804 -07 000000626 INF: FPGA: Recv ZDACR 37013
17-03-18 05:16:26.814 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:26.814 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:26.814 -07 000000569 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 05:16:26.974 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:16:26.974 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:16:26.974 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:26.974 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:16:26.974 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:16:26.974 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:26.974 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:26.974 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:16:26.974 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:16:27.114 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 05:16:27.184 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:16:27.184 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:16:27.244 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:27.244 -07 000000479 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:16:27.254 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:27.254 -07 000000447 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:27.254 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:16:27.254 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 05:16:28.014 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.975845,
17-03-18 05:16:28.204 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:28.204 -07 000000479 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:16:28.214 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:28.214 -07 000000447 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:28.244 -07 000000447 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:28.244 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:28.244 -07 000000447 INF: Y Motor: Moved to 66.5376 after 1456 ms (table move)
17-03-18 05:16:28.244 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169435 mm (DAC = 37013)
17-03-18 05:16:28.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.244 -07 000000606 INF: FPGA: Recv ZSGSRD 35672
17-03-18 05:16:28.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:28.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.254 -07 000000608 INF: FPGA: Recv ZSGSRD 35664
17-03-18 05:16:28.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.264 -07 000000569 INF: FPGA: Recv ZSGSRD 35660
17-03-18 05:16:28.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.274 -07 000000479 INF: FPGA: Recv ZSGSRD 35657
17-03-18 05:16:28.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.284 -07 000000618 INF: FPGA: Recv ZSGSRD 35659
17-03-18 05:16:28.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.294 -07 000000579 INF: FPGA: Recv ZSGSRD 35666
17-03-18 05:16:28.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:28.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.304 -07 000000382 INF: FPGA: Recv ZSGSRD 35663
17-03-18 05:16:28.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.314 -07 000000455 INF: FPGA: Recv ZSGSRD 35664
17-03-18 05:16:28.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.324 -07 000000502 INF: FPGA: Recv ZSGSRD 35668
17-03-18 05:16:28.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.334 -07 000000467 INF: FPGA: Recv ZSGSRD 35670
17-03-18 05:16:28.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:28.344 -07 000000579 INF: FPGA: Recv ZPIEZORD 31504
17-03-18 05:16:28.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.354 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.2 V.
17-03-18 05:16:28.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35664 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35664 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35657 (-168.5 uncal um), Max = 35672 (-168.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:28.354 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35664, posNoise = 8, negNoise = 7
17-03-18 05:16:28.354 -07 000000610 INF: Z Motor: After move to -0.169435, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:28.354 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:16:28.354 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:28.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 05:16:28.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:28.404 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.169436453834898. ----------
17-03-18 05:16:28.404 -07 000000610 INF: Cycle	135	Tile	9	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:28.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36837, sync = True, waitForSettling = True)
17-03-18 05:16:28.404 -07 000000610 INF: Z Motor: Moving to -0.168629 mm, started at -0.169436 mm, distance = 0.81 um
17-03-18 05:16:28.404 -07 000000610 INF: FPGA: Xmit ZDACW 36837\n [Z Motor]
17-03-18 05:16:28.414 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:16:28.414 -07 000000610 INF: FPGA: 'ZDACW 36837' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 05:16:28.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:28.414 -07 000000625 INF: FPGA: Recv ZDACR 36837
17-03-18 05:16:28.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:28.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:28.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.574 -07 000000581 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:16:28.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:28.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.584 -07 000000455 INF: FPGA: Recv ZSGSRD 35536
17-03-18 05:16:28.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.594 -07 000000502 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:16:28.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:16:28.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.614 -07 000000625 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:16:28.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.624 -07 000000479 INF: FPGA: Recv ZSGSRD 35544
17-03-18 05:16:28.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.634 -07 000000455 INF: FPGA: Recv ZSGSRD 35540
17-03-18 05:16:28.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:16:28.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.654 -07 000000474 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:16:28.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:28.664 -07 000000618 INF: FPGA: Recv ZSGSRD 35544
17-03-18 05:16:28.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:28.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:28.674 -07 000000626 INF: FPGA: Recv ZPIEZORD 31324
17-03-18 05:16:28.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:28.684 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 05:16:28.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35536 (-167.7 uncal um), Max = 35544 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:16:28.684 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 4, negNoise = 4
17-03-18 05:16:28.684 -07 000000610 INF: Z Motor: After move to -0.168629, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:28.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:16:28.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:28.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:28.684 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:28.684 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:28.684 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:28.684 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:28.684 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:28.684 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:28.684 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:28.684 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:28.684 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:28.684 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:28.694 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:28.694 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:28.694 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:28.694 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:28.694 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:16:28.694 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:16:28.704 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:16:28.704 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:16:28.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 37013 150\n [Camera]
17-03-18 05:16:28.904 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:29.344 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:29.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:29.344 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:29.344 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:29.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:16:29.344 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:29.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:29.344 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:29.344 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:29.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:16:29.534 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37013 820
17-03-18 05:16:29.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:29.724 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:16:29.724 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:16:29.724 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:29.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:16:29.724 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:16:29.724 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:29.724 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:29.724 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:16:29.724 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:29.734 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:16:29.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:29.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:29.894 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:29.894 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:29.894 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:16:29.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:29.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:29.894 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:29.894 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:29.894 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:16:30.084 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:30.084 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:30.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 37013 150' command took 2 ms to send, 1377 ms to get response, and 1380 ms overall
17-03-18 05:16:30.084 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169369
17-03-18 05:16:30.094 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16937 mm
17-03-18 05:16:30.094 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:30.094 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:16:30.094 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 36999, sync = True, waitForSettling = False)
17-03-18 05:16:30.094 -07 000000474 INF: Z Motor: Moving to -0.169371 mm, started at -0.168640 mm, distance = -0.73 um
17-03-18 05:16:30.094 -07 000000474 INF: FPGA: Xmit ZDACW 36999\n [Z Motor]
17-03-18 05:16:30.094 -07 000000479 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 05:16:30.094 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:16:30.104 -07 000000474 INF: FPGA: 'ZDACW 36999' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:30.104 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:30.104 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:16:30.114 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:16:30.114 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:30.114 -07 000000479 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:30.114 -07 000000479 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:30.114 -07 000000479 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:16:30.114 -07 000000626 INF: FPGA: Recv ZDACR 36999
17-03-18 05:16:30.124 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:30.124 -07 000000474 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 05:16:30.124 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:30.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:16:30.284 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:16:30.284 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:30.284 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:16:30.284 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:16:30.284 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:30.284 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:30.294 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:30.294 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:16:30.294 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:16:30.494 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:16:30.494 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 05:16:30.544 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:30.554 -07 000000467 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:16:30.554 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:16:30.554 -07 000000479 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:30.554 -07 000000479 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:16:30.554 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 05:16:31.504 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:31.504 -07 000000606 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:16:31.514 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:31.514 -07 000000479 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:31.544 -07 000000479 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:31.544 -07 000000479 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:31.544 -07 000000479 INF: Y Motor: Moved to 67.3706 after 1447 ms (table move)
17-03-18 05:16:31.544 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169371 mm (DAC = 36999)
17-03-18 05:16:31.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.544 -07 000000569 INF: FPGA: Recv ZSGSRD 35659
17-03-18 05:16:31.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:31.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.554 -07 000000474 INF: FPGA: Recv ZSGSRD 35659
17-03-18 05:16:31.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.564 -07 000000455 INF: FPGA: Recv ZSGSRD 35648
17-03-18 05:16:31.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.574 -07 000000467 INF: FPGA: Recv ZSGSRD 35654
17-03-18 05:16:31.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.584 -07 000000447 INF: FPGA: Recv ZSGSRD 35648
17-03-18 05:16:31.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.594 -07 000000502 INF: FPGA: Recv ZSGSRD 35654
17-03-18 05:16:31.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35662
17-03-18 05:16:31.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.614 -07 000000424 INF: FPGA: Recv ZSGSRD 35650
17-03-18 05:16:31.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35661
17-03-18 05:16:31.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.634 -07 000000455 INF: FPGA: Recv ZSGSRD 35653
17-03-18 05:16:31.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:31.644 -07 000000569 INF: FPGA: Recv ZPIEZORD 31476
17-03-18 05:16:31.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.654 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.2 V.
17-03-18 05:16:31.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35648 (-168.5 uncal um), Max = 35662 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:31.654 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 7, negNoise = 7
17-03-18 05:16:31.654 -07 000000610 INF: Z Motor: After move to -0.169371, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:31.654 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 106 ms (allowed 150 ms), total time = 1556 ms
17-03-18 05:16:31.654 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:31.704 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 05:16:31.704 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:31.704 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.169378635925622. ----------
17-03-18 05:16:31.704 -07 000000610 INF: Cycle	135	Tile	10	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:31.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36822, sync = True, waitForSettling = True)
17-03-18 05:16:31.704 -07 000000610 INF: Z Motor: Moving to -0.168560 mm, started at -0.169379 mm, distance = 0.82 um
17-03-18 05:16:31.704 -07 000000610 INF: FPGA: Xmit ZDACW 36822\n [Z Motor]
17-03-18 05:16:31.704 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:16:31.714 -07 000000610 INF: FPGA: 'ZDACW 36822' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:31.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:31.714 -07 000000512 INF: FPGA: Recv ZDACR 36822
17-03-18 05:16:31.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:31.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:31.744 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:31.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.874 -07 000000608 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:16:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:16:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.894 -07 000000502 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:16:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.904 -07 000000625 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:16:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.914 -07 000000581 INF: FPGA: Recv ZSGSRD 35526
17-03-18 05:16:31.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.924 -07 000000618 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:16:31.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.934 -07 000000480 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:16:31.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.944 -07 000000467 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:16:31.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.954 -07 000000625 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:16:31.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:31.964 -07 000000579 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:16:31.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:31.974 -07 000000501 INF: FPGA: Recv ZPIEZORD 31292
17-03-18 05:16:31.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:31.984 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.3 V.
17-03-18 05:16:31.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35529 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35526 (-167.7 uncal um), Max = 35533 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:16:31.984 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35529, posNoise = 4, negNoise = 3
17-03-18 05:16:31.984 -07 000000610 INF: Z Motor: After move to -0.168560, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:31.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:16:31.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:31.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:31.984 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:31.984 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:31.984 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:31.984 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:31.984 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:31.984 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:31.984 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:31.984 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:31.984 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:16:31.984 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:31.994 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:31.994 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:31.994 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:31.994 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:32.004 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:16:32.004 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:16:32.004 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:16:32.004 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:16:32.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36999 150\n [Camera]
17-03-18 05:16:32.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:32.644 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:32.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:32.644 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:32.644 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:32.644 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:16:32.644 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:32.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:32.644 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:32.774 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:32.774 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:16:32.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36999 820
17-03-18 05:16:32.984 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:33.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:16:33.024 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:16:33.024 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:33.034 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:33.034 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:16:33.144 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:16:33.144 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 05:16:33.144 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:33.154 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:33.154 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 05:16:33.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:33.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:33.194 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:33.194 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:33.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:16:33.194 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:33.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:33.194 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:33.204 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:33.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:16:33.374 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.983999,
17-03-18 05:16:33.384 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:16:33.384 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:33.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36999 150' command took 2 ms to send, 1377 ms to get response, and 1381 ms overall
17-03-18 05:16:33.384 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.168856
17-03-18 05:16:33.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16886 mm
17-03-18 05:16:33.394 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:33.394 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:16:33.394 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 05:16:33.394 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36887, sync = True, waitForSettling = False)
17-03-18 05:16:33.394 -07 000000608 INF: Z Motor: Moving to -0.168858 mm, started at -0.168569 mm, distance = -0.29 um
17-03-18 05:16:33.404 -07 000000608 INF: FPGA: Xmit ZDACW 36887\n [Z Motor]
17-03-18 05:16:33.404 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:16:33.414 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:33.414 -07 000000608 INF: FPGA: 'ZDACW 36887' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:16:33.414 -07 000000625 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:16:33.424 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:16:33.424 -07 000000618 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:33.424 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:33.424 -07 000000618 INF: Y Motor: Moving 1347 steps-25
17-03-18 05:16:33.434 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:33.434 -07 000000581 INF: FPGA: Recv ZDACR 36887
17-03-18 05:16:33.444 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:16:33.444 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:16:33.444 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:33.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:16:33.584 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:16:33.584 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:33.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:16:33.584 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:33.584 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:33.584 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:33.584 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:33.584 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:16:33.594 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:16:33.814 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:16:33.814 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:16:33.864 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:33.874 -07 000000467 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:16:33.884 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:33.884 -07 000000618 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:33.884 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:16:33.884 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.842 mm, average velocity = 2.116 mm/sec
17-03-18 05:16:34.834 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:34.834 -07 000000502 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:16:34.844 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:34.844 -07 000000618 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:34.874 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:34.874 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:34.874 -07 000000618 INF: Y Motor: Moved to 68.2036 after 1475 ms (table move)
17-03-18 05:16:34.874 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168858 mm (DAC = 36887)
17-03-18 05:16:34.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.874 -07 000000606 INF: FPGA: Recv ZSGSRD 35576
17-03-18 05:16:34.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:34.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.884 -07 000000474 INF: FPGA: Recv ZSGSRD 35578
17-03-18 05:16:34.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.894 -07 000000579 INF: FPGA: Recv ZSGSRD 35577
17-03-18 05:16:34.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:34.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.904 -07 000000626 INF: FPGA: Recv ZSGSRD 35568
17-03-18 05:16:34.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.914 -07 000000467 INF: FPGA: Recv ZSGSRD 35574
17-03-18 05:16:34.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.924 -07 000000608 INF: FPGA: Recv ZSGSRD 35578
17-03-18 05:16:34.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35575
17-03-18 05:16:34.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.944 -07 000000479 INF: FPGA: Recv ZSGSRD 35574
17-03-18 05:16:34.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35577
17-03-18 05:16:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:34.964 -07 000000461 INF: FPGA: Recv ZSGSRD 35575
17-03-18 05:16:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:34.974 -07 000000424 INF: FPGA: Recv ZPIEZORD 31368
17-03-18 05:16:34.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:34.984 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.3 V.
17-03-18 05:16:34.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35576 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35568 (-167.9 uncal um), Max = 35578 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:34.984 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 3, negNoise = 7
17-03-18 05:16:34.984 -07 000000610 INF: Z Motor: After move to -0.168858, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:34.984 -07 000000610 INF: Z Motor: Settle wait time = 1476 ms, measure time = 107 ms (allowed 150 ms), total time = 1583 ms
17-03-18 05:16:34.984 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:35.034 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 05:16:35.034 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:35.034 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.168864698954281. ----------
17-03-18 05:16:35.034 -07 000000610 INF: Cycle	135	Tile	11	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:35.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36710, sync = True, waitForSettling = True)
17-03-18 05:16:35.034 -07 000000610 INF: Z Motor: Moving to -0.168048 mm, started at -0.168865 mm, distance = 0.82 um
17-03-18 05:16:35.034 -07 000000610 INF: FPGA: Xmit ZDACW 36710\n [Z Motor]
17-03-18 05:16:35.034 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:16:35.044 -07 000000610 INF: FPGA: 'ZDACW 36710' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:35.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:35.044 -07 000000618 INF: FPGA: Recv ZDACR 36710
17-03-18 05:16:35.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.204 -07 000000502 INF: FPGA: Recv ZSGSRD 35449
17-03-18 05:16:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.214 -07 000000581 INF: FPGA: Recv ZSGSRD 35444
17-03-18 05:16:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.224 -07 000000424 INF: FPGA: Recv ZSGSRD 35446
17-03-18 05:16:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.234 -07 000000474 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:16:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:16:35.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.254 -07 000000424 INF: FPGA: Recv ZSGSRD 35451
17-03-18 05:16:35.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.264 -07 000000479 INF: FPGA: Recv ZSGSRD 35447
17-03-18 05:16:35.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.274 -07 000000502 INF: FPGA: Recv ZSGSRD 35452
17-03-18 05:16:35.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.284 -07 000000626 INF: FPGA: Recv ZSGSRD 35453
17-03-18 05:16:35.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:35.294 -07 000000461 INF: FPGA: Recv ZSGSRD 35447
17-03-18 05:16:35.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:35.304 -07 000000579 INF: FPGA: Recv ZPIEZORD 31186
17-03-18 05:16:35.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:35.314 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.4 V.
17-03-18 05:16:35.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35449 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35450 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35444 (-167.2 uncal um), Max = 35454 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:35.314 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35449, posNoise = 5, negNoise = 5
17-03-18 05:16:35.314 -07 000000610 INF: Z Motor: After move to -0.168048, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:35.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:16:35.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:35.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:35.314 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:35.314 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:35.314 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:35.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:35.314 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:35.314 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:35.314 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:35.314 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:35.314 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:35.314 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:35.324 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:35.324 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:35.324 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:35.324 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:35.334 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:16:35.334 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:35.334 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:16:35.334 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:35.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36887 150\n [Camera]
17-03-18 05:16:35.544 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:35.974 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:35.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:35.974 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:35.974 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:35.974 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:16:35.974 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:35.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:35.974 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:35.974 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:35.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:16:36.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36887 820
17-03-18 05:16:36.314 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:36.364 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:16:36.364 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:16:36.364 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:36.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:16:36.364 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:36.364 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:36.364 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:36.364 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:36.364 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:16:36.374 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:16:36.524 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:36.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:36.524 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:36.534 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:36.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:16:36.534 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:36.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:36.534 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:36.534 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:36.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:16:36.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:36.714 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:36.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36887 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:16:36.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:16:36.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168055248224419. ------
17-03-18 05:16:36.724 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17470 mm
17-03-18 05:16:36.724 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:36.724 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:36.734 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:16:36.734 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 05:16:36.734 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38162, sync = True, waitForSettling = False)
17-03-18 05:16:36.734 -07 000000606 INF: Z Motor: Moving to -0.174694 mm, started at -0.168055 mm, distance = -6.64 um
17-03-18 05:16:36.734 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:36.734 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:36.734 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:36.734 -07 000000502 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:16:36.744 -07 000000447 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:36.744 -07 000000447 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:36.744 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:16:36.744 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:36.744 -07 000000447 INF: Y Motor: Moving 1342 steps-18
17-03-18 05:16:36.744 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:36.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:36.754 -07 000000606 INF: FPGA: Xmit ZDACW 38162\n [Z Motor]
17-03-18 05:16:36.754 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:16:36.764 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:36.764 -07 000000606 INF: FPGA: 'ZDACW 38162' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:16:36.774 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:36.774 -07 000000474 INF: FPGA: Recv ZDACR 38162
17-03-18 05:16:36.784 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:36.784 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:16:36.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:16:36.914 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:16:36.914 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:16:36.914 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:36.914 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:16:36.914 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:36.914 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:36.914 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:16:36.924 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:36.924 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:16:36.944 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:16:36.944 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 05:16:37.134 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:16:37.134 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:16:37.184 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:37.194 -07 000000608 INF: FPGA: Recv YRDPOS 141364
17-03-18 05:16:37.204 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:37.204 -07 000000447 INF: Y Motor: Encoder = 141364 = motor step 110440.6 = 69.0254 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:37.204 -07 000000447 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:16:37.204 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 05:16:38.154 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:38.154 -07 000000424 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:16:38.164 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:38.164 -07 000000447 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:38.194 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:38.194 -07 000000447 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:38.194 -07 000000447 INF: Y Motor: Moved to 69.0259 after 1462 ms (table move)
17-03-18 05:16:38.194 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174694 mm (DAC = 38162)
17-03-18 05:16:38.194 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.194 -07 000000455 INF: FPGA: Recv ZSGSRD 36485
17-03-18 05:16:38.204 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:38.204 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.204 -07 000000608 INF: FPGA: Recv ZSGSRD 36476
17-03-18 05:16:38.214 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:38.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36478
17-03-18 05:16:38.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:38.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.224 -07 000000461 INF: FPGA: Recv ZSGSRD 36479
17-03-18 05:16:38.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:38.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.234 -07 000000474 INF: FPGA: Recv ZSGSRD 36484
17-03-18 05:16:38.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:38.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.244 -07 000000382 INF: FPGA: Recv ZSGSRD 36490
17-03-18 05:16:38.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:38.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.254 -07 000000581 INF: FPGA: Recv ZSGSRD 36484
17-03-18 05:16:38.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:38.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.274 -07 000000467 INF: FPGA: Recv ZSGSRD 36487
17-03-18 05:16:38.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:38.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.284 -07 000000581 INF: FPGA: Recv ZSGSRD 36478
17-03-18 05:16:38.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:38.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:38.304 -07 000000467 INF: FPGA: Recv ZSGSRD 36482
17-03-18 05:16:38.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:38.314 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:38.314 -07 000000502 INF: FPGA: Recv ZPIEZORD 32520
17-03-18 05:16:38.324 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:38.324 -07 000000480 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.8 V.
17-03-18 05:16:38.324 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36482 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36483 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36476 (-173.8 uncal um), Max = 36490 (-173.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:38.324 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36482, posNoise = 8, negNoise = 6
17-03-18 05:16:38.324 -07 000000480 INF: Z Motor: After move to -0.174694, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:38.324 -07 000000480 INF: Z Motor: Settle wait time = 1465 ms, measure time = 125 ms (allowed 150 ms), total time = 1590 ms
17-03-18 05:16:38.324 -07 000000480 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:38.354 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:16:38.354 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:38.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:38.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:38.354 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:38.354 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:38.354 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:16:38.354 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:38.354 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:16:38.354 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:16:38.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:38.364 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:16:38.374 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:16:38.374 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:16:38.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:16:38.424 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:16:38.724 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:16:38.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:16:38.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:16:38.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:16:38.754 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.004458,
17-03-18 05:16:38.754 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:16:38.764 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:16:38.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:16:38.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:16:38.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:38.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:16:38.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:16:38.864 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:38.864 -07 000000480 INF: Autofocus start
17-03-18 05:16:38.864 -07 000000480 INF: MeasureProfile start
17-03-18 05:16:38.864 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:38.874 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:38.874 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:16:38.874 -07 000000480 INF: MeasureProfile done
17-03-18 05:16:38.874 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:16:38.874 -07 000000480 INF: Autofocus finished
17-03-18 05:16:39.074 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:16:39.074 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:16:39.074 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174691459366858. ----------
17-03-18 05:16:39.074 -07 000000610 INF: Cycle	135	Tile	12	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:39.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36677, sync = True, waitForSettling = True)
17-03-18 05:16:39.084 -07 000000610 INF: Z Motor: Moving to -0.167897 mm, started at -0.174691 mm, distance = 6.79 um
17-03-18 05:16:39.084 -07 000000610 INF: FPGA: Xmit ZDACW 36677\n [Z Motor]
17-03-18 05:16:39.084 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:16:39.094 -07 000000610 INF: FPGA: 'ZDACW 36677' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:16:39.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:39.094 -07 000000569 INF: FPGA: Recv ZDACR 36677
17-03-18 05:16:39.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.254 -07 000000461 INF: FPGA: Recv ZSGSRD 35429
17-03-18 05:16:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.264 -07 000000479 INF: FPGA: Recv ZSGSRD 35428
17-03-18 05:16:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.274 -07 000000618 INF: FPGA: Recv ZSGSRD 35430
17-03-18 05:16:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.284 -07 000000382 INF: FPGA: Recv ZSGSRD 35422
17-03-18 05:16:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35428
17-03-18 05:16:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.304 -07 000000424 INF: FPGA: Recv ZSGSRD 35428
17-03-18 05:16:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.314 -07 000000480 INF: FPGA: Recv ZSGSRD 35425
17-03-18 05:16:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.324 -07 000000626 INF: FPGA: Recv ZSGSRD 35432
17-03-18 05:16:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35423
17-03-18 05:16:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:39.344 -07 000000569 INF: FPGA: Recv ZSGSRD 35424
17-03-18 05:16:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:39.354 -07 000000474 INF: FPGA: Recv ZPIEZORD 31134
17-03-18 05:16:39.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:39.364 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.5 V.
17-03-18 05:16:39.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35427 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35428 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35422 (-167.0 uncal um), Max = 35432 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:39.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35427, posNoise = 5, negNoise = 5
17-03-18 05:16:39.364 -07 000000610 INF: Z Motor: After move to -0.167897, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:39.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:16:39.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:39.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:39.364 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:39.364 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:39.364 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:39.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:39.364 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:39.364 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:39.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:39.364 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:39.364 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:39.364 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:39.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:39.374 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:39.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:16:39.374 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:39.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:16:39.384 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:16:39.384 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:16:39.384 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:39.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36854 150\n [Camera]
17-03-18 05:16:39.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:40.024 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:40.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:40.024 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:40.024 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:40.024 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:16:40.024 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:40.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:40.024 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:40.024 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:40.024 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:16:40.214 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36854 821
17-03-18 05:16:40.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:40.404 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:16:40.534 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 502 ms.
17-03-18 05:16:40.534 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 05:16:40.534 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:40.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 05:16:40.534 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:40.534 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:40.534 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:40.534 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 05:16:40.544 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-18 05:16:40.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:40.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:40.574 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:40.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:40.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:40.584 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:40.584 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:40.584 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:16:40.594 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:40.594 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:16:40.764 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:40.764 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:40.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36854 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:16:40.774 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168307
17-03-18 05:16:40.774 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16831 mm
17-03-18 05:16:40.774 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:40.774 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:16:40.774 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:16:40.774 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:40.774 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36767, sync = True, waitForSettling = False)
17-03-18 05:16:40.774 -07 000000382 INF: Z Motor: Moving to -0.168309 mm, started at -0.167914 mm, distance = -0.39 um
17-03-18 05:16:40.774 -07 000000608 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:16:40.784 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:40.784 -07 000000618 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:40.784 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:40.784 -07 000000618 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:16:40.784 -07 000000382 INF: FPGA: Xmit ZDACW 36767\n [Z Motor]
17-03-18 05:16:40.784 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:16:40.794 -07 000000382 INF: FPGA: 'ZDACW 36767' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:16:40.794 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:40.794 -07 000000479 INF: FPGA: Recv ZDACR 36767
17-03-18 05:16:40.804 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:40.804 -07 000000382 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 05:16:40.804 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:40.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:16:40.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:16:40.964 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:16:40.964 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:40.964 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:16:40.964 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:40.974 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:40.974 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:16:40.974 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:16:40.984 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:16:41.184 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:16:41.184 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 05:16:41.234 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:41.234 -07 000000479 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:16:41.244 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:41.244 -07 000000618 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:41.244 -07 000000618 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:16:41.244 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.847 mm, average velocity = 2.117 mm/sec
17-03-18 05:16:41.744 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:41.744 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:42.194 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:42.194 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:16:42.204 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:42.204 -07 000000618 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:42.234 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:42.234 -07 000000618 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:42.234 -07 000000618 INF: Y Motor: Moved to 69.8623 after 1458 ms (table move)
17-03-18 05:16:42.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168309 mm (DAC = 36767)
17-03-18 05:16:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.234 -07 000000581 INF: FPGA: Recv ZSGSRD 35486
17-03-18 05:16:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:42.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.244 -07 000000461 INF: FPGA: Recv ZSGSRD 35481
17-03-18 05:16:42.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.254 -07 000000474 INF: FPGA: Recv ZSGSRD 35491
17-03-18 05:16:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.264 -07 000000502 INF: FPGA: Recv ZSGSRD 35492
17-03-18 05:16:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.274 -07 000000480 INF: FPGA: Recv ZSGSRD 35496
17-03-18 05:16:42.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.284 -07 000000467 INF: FPGA: Recv ZSGSRD 35484
17-03-18 05:16:42.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.294 -07 000000626 INF: FPGA: Recv ZSGSRD 35487
17-03-18 05:16:42.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.304 -07 000000474 INF: FPGA: Recv ZSGSRD 35488
17-03-18 05:16:42.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.314 -07 000000502 INF: FPGA: Recv ZSGSRD 35488
17-03-18 05:16:42.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.324 -07 000000447 INF: FPGA: Recv ZSGSRD 35490
17-03-18 05:16:42.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:42.334 -07 000000625 INF: FPGA: Recv ZPIEZORD 31269
17-03-18 05:16:42.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.344 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.3 V.
17-03-18 05:16:42.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35488 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35488 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35481 (-167.4 uncal um), Max = 35496 (-167.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:42.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35488, posNoise = 8, negNoise = 7
17-03-18 05:16:42.344 -07 000000610 INF: Z Motor: After move to -0.168309, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:42.344 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:16:42.344 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:42.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 05:16:42.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:42.394 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.168305792497948. ----------
17-03-18 05:16:42.394 -07 000000610 INF: Cycle	135	Tile	13	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:42.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36590, sync = True, waitForSettling = True)
17-03-18 05:16:42.394 -07 000000610 INF: Z Motor: Moving to -0.167498 mm, started at -0.168306 mm, distance = 0.81 um
17-03-18 05:16:42.394 -07 000000610 INF: FPGA: Xmit ZDACW 36590\n [Z Motor]
17-03-18 05:16:42.394 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:16:42.404 -07 000000610 INF: FPGA: 'ZDACW 36590' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:42.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:42.404 -07 000000455 INF: FPGA: Recv ZDACR 36590
17-03-18 05:16:42.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:16:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:42.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.574 -07 000000447 INF: FPGA: Recv ZSGSRD 35369
17-03-18 05:16:42.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35364
17-03-18 05:16:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.594 -07 000000569 INF: FPGA: Recv ZSGSRD 35366
17-03-18 05:16:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.604 -07 000000501 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:16:42.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.614 -07 000000467 INF: FPGA: Recv ZSGSRD 35363
17-03-18 05:16:42.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.624 -07 000000581 INF: FPGA: Recv ZSGSRD 35363
17-03-18 05:16:42.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.634 -07 000000512 INF: FPGA: Recv ZSGSRD 35360
17-03-18 05:16:42.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35362
17-03-18 05:16:42.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:42.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35362
17-03-18 05:16:42.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:42.664 -07 000000424 INF: FPGA: Recv ZPIEZORD 31093
17-03-18 05:16:42.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:42.674 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.4 V.
17-03-18 05:16:42.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35363 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35362 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35360 (-166.6 uncal um), Max = 35369 (-166.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:16:42.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35363, posNoise = 6, negNoise = 3
17-03-18 05:16:42.674 -07 000000610 INF: Z Motor: After move to -0.167498, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:42.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 05:16:42.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:42.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:42.674 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:42.674 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:42.674 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:42.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:42.674 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:42.674 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:42.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:16:42.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:42.674 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:42.674 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:42.684 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:42.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:42.684 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:42.684 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:42.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:16:42.684 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:16:42.694 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:16:42.694 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:16:42.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36767 150\n [Camera]
17-03-18 05:16:42.894 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:43.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:43.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:43.324 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:43.324 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:43.324 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:16:43.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:43.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:43.334 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:43.334 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:43.334 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:16:43.514 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36767 820
17-03-18 05:16:43.664 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:43.714 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:16:43.714 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:16:43.714 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:43.714 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:16:43.714 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:16:43.714 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:43.724 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:43.724 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:16:43.724 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:43.724 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:16:43.874 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:43.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:43.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:43.884 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:43.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:16:43.884 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:43.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:43.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:44.004 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:44.004 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:16:44.074 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:16:44.074 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:44.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36767 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-18 05:16:44.074 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167859
17-03-18 05:16:44.074 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16786 mm
17-03-18 05:16:44.074 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:44.074 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:16:44.074 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:16:44.074 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:44.074 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36669, sync = True, waitForSettling = False)
17-03-18 05:16:44.074 -07 000000569 INF: Z Motor: Moving to -0.167860 mm, started at -0.167503 mm, distance = -0.36 um
17-03-18 05:16:44.074 -07 000000608 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:16:44.084 -07 000000569 INF: FPGA: Xmit ZDACW 36669\n [Z Motor]
17-03-18 05:16:44.084 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:44.084 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:44.084 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:44.084 -07 000000424 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:16:44.084 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:16:44.094 -07 000000569 INF: FPGA: 'ZDACW 36669' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:16:44.094 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:44.104 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:44.104 -07 000000455 INF: FPGA: Recv ZDACR 36669
17-03-18 05:16:44.114 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:44.114 -07 000000569 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:16:44.124 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.015368,
17-03-18 05:16:44.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:16:44.274 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:16:44.274 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:44.274 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:44.274 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:16:44.384 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:44.384 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:16:44.384 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:44.394 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:44.394 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 05:16:44.464 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:16:44.464 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:16:44.514 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:44.524 -07 000000512 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:16:44.524 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:16:44.524 -07 000000424 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:44.524 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:16:44.524 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.171 mm/sec
17-03-18 05:16:45.474 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:45.474 -07 000000461 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:16:45.484 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.484 -07 000000424 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:45.514 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:45.514 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:45.514 -07 000000424 INF: Y Motor: Moved to 70.6875 after 1436 ms (table move)
17-03-18 05:16:45.514 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167860 mm (DAC = 36669)
17-03-18 05:16:45.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.514 -07 000000382 INF: FPGA: Recv ZSGSRD 35422
17-03-18 05:16:45.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:45.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.524 -07 000000512 INF: FPGA: Recv ZSGSRD 35419
17-03-18 05:16:45.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.534 -07 000000625 INF: FPGA: Recv ZSGSRD 35420
17-03-18 05:16:45.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35414
17-03-18 05:16:45.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.554 -07 000000461 INF: FPGA: Recv ZSGSRD 35412
17-03-18 05:16:45.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.564 -07 000000618 INF: FPGA: Recv ZSGSRD 35424
17-03-18 05:16:45.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.574 -07 000000512 INF: FPGA: Recv ZSGSRD 35420
17-03-18 05:16:45.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.584 -07 000000579 INF: FPGA: Recv ZSGSRD 35425
17-03-18 05:16:45.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.594 -07 000000608 INF: FPGA: Recv ZSGSRD 35419
17-03-18 05:16:45.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.604 -07 000000480 INF: FPGA: Recv ZSGSRD 35423
17-03-18 05:16:45.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:45.614 -07 000000447 INF: FPGA: Recv ZPIEZORD 31199
17-03-18 05:16:45.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.624 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.3 V.
17-03-18 05:16:45.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35420 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35412 (-166.9 uncal um), Max = 35425 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:16:45.624 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35420, posNoise = 5, negNoise = 8
17-03-18 05:16:45.624 -07 000000610 INF: Z Motor: After move to -0.167860, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:45.624 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-18 05:16:45.624 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:45.674 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 05:16:45.674 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:45.674 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.167868946072308. ----------
17-03-18 05:16:45.674 -07 000000610 INF: Cycle	135	Tile	14	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:45.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36492, sync = True, waitForSettling = True)
17-03-18 05:16:45.674 -07 000000610 INF: Z Motor: Moving to -0.167050 mm, started at -0.167869 mm, distance = 0.82 um
17-03-18 05:16:45.674 -07 000000610 INF: FPGA: Xmit ZDACW 36492\n [Z Motor]
17-03-18 05:16:45.674 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:16:45.684 -07 000000610 INF: FPGA: 'ZDACW 36492' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:45.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:45.684 -07 000000455 INF: FPGA: Recv ZDACR 36492
17-03-18 05:16:45.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:45.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.844 -07 000000579 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:16:45.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:45.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.854 -07 000000480 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:16:45.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.864 -07 000000625 INF: FPGA: Recv ZSGSRD 35292
17-03-18 05:16:45.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.874 -07 000000618 INF: FPGA: Recv ZSGSRD 35292
17-03-18 05:16:45.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.884 -07 000000569 INF: FPGA: Recv ZSGSRD 35289
17-03-18 05:16:45.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.894 -07 000000382 INF: FPGA: Recv ZSGSRD 35298
17-03-18 05:16:45.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.904 -07 000000479 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:16:45.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.914 -07 000000424 INF: FPGA: Recv ZSGSRD 35295
17-03-18 05:16:45.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.924 -07 000000618 INF: FPGA: Recv ZSGSRD 35290
17-03-18 05:16:45.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:45.934 -07 000000447 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:16:45.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:45.944 -07 000000608 INF: FPGA: Recv ZPIEZORD 30992
17-03-18 05:16:45.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:45.954 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.5 V.
17-03-18 05:16:45.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35294 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35294 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35289 (-166.2 uncal um), Max = 35298 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:45.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35294, posNoise = 4, negNoise = 5
17-03-18 05:16:45.954 -07 000000610 INF: Z Motor: After move to -0.167050, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:45.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:16:45.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:45.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:45.954 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:45.954 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:45.954 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:45.954 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:45.954 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:45.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:45.954 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:45.954 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:45.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:45.954 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:45.964 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:16:45.964 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:45.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:45.964 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:45.974 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:16:45.974 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:16:45.974 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:16:45.974 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:16:45.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36669 150\n [Camera]
17-03-18 05:16:46.184 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:46.624 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:46.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:46.624 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:46.624 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:46.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:16:46.624 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:46.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:46.624 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:46.624 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:46.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:16:46.744 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:46.804 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36669 820
17-03-18 05:16:46.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:47.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:16:47.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:47.004 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:16:47.004 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:47.004 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:16:47.004 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:47.014 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:47.014 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:47.014 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:16:47.014 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:16:47.164 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:47.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:47.164 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:47.164 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:47.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:16:47.174 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:47.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:47.174 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:47.174 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:47.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:16:47.354 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:47.364 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:47.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36669 150' command took 2 ms to send, 1370 ms to get response, and 1379 ms overall
17-03-18 05:16:47.364 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167771
17-03-18 05:16:47.364 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16777 mm
17-03-18 05:16:47.364 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:47.364 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:16:47.364 -07 000000479 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:16:47.364 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:47.364 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36649, sync = True, waitForSettling = False)
17-03-18 05:16:47.364 -07 000000608 INF: Z Motor: Moving to -0.167768 mm, started at -0.167059 mm, distance = -0.71 um
17-03-18 05:16:47.364 -07 000000625 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:16:47.374 -07 000000608 INF: FPGA: Xmit ZDACW 36649\n [Z Motor]
17-03-18 05:16:47.374 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:16:47.374 -07 000000479 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:47.374 -07 000000479 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:47.374 -07 000000479 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:16:47.374 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:16:47.384 -07 000000608 INF: FPGA: 'ZDACW 36649' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:16:47.384 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:47.394 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:47.394 -07 000000618 INF: FPGA: Recv ZDACR 36649
17-03-18 05:16:47.404 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:47.404 -07 000000608 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:16:47.554 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:16:47.554 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:16:47.554 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:47.554 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:16:47.554 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:16:47.554 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:47.554 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:47.554 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:47.554 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:47.564 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:16:47.764 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:16:47.764 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-18 05:16:47.814 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:47.824 -07 000000579 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:16:47.824 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:16:47.824 -07 000000479 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:47.824 -07 000000479 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:16:47.824 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.161 mm/sec
17-03-18 05:16:48.774 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:48.774 -07 000000467 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:16:48.784 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:48.784 -07 000000479 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:48.814 -07 000000479 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:48.814 -07 000000479 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:48.814 -07 000000479 INF: Y Motor: Moved to 71.5181 after 1446 ms (table move)
17-03-18 05:16:48.814 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167768 mm (DAC = 36649)
17-03-18 05:16:48.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.814 -07 000000569 INF: FPGA: Recv ZSGSRD 35396
17-03-18 05:16:48.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:48.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.824 -07 000000455 INF: FPGA: Recv ZSGSRD 35411
17-03-18 05:16:48.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.834 -07 000000447 INF: FPGA: Recv ZSGSRD 35403
17-03-18 05:16:48.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35415
17-03-18 05:16:48.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.854 -07 000000479 INF: FPGA: Recv ZSGSRD 35408
17-03-18 05:16:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.864 -07 000000512 INF: FPGA: Recv ZSGSRD 35405
17-03-18 05:16:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.874 -07 000000618 INF: FPGA: Recv ZSGSRD 35403
17-03-18 05:16:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.884 -07 000000424 INF: FPGA: Recv ZSGSRD 35399
17-03-18 05:16:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.894 -07 000000382 INF: FPGA: Recv ZSGSRD 35403
17-03-18 05:16:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:48.904 -07 000000608 INF: FPGA: Recv ZSGSRD 35409
17-03-18 05:16:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:48.914 -07 000000512 INF: FPGA: Recv ZPIEZORD 31112
17-03-18 05:16:48.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.924 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.5 V.
17-03-18 05:16:48.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35405 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35404 (-166.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35396 (-166.8 uncal um), Max = 35415 (-167.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:16:48.924 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35405, posNoise = 10, negNoise = 9
17-03-18 05:16:48.924 -07 000000610 INF: Z Motor: After move to -0.167768, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:48.924 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-18 05:16:48.924 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:48.974 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 05:16:48.974 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:48.974 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.167772582890182. ----------
17-03-18 05:16:48.974 -07 000000610 INF: Cycle	135	Tile	15	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:48.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36473, sync = True, waitForSettling = True)
17-03-18 05:16:48.974 -07 000000610 INF: Z Motor: Moving to -0.166963 mm, started at -0.167773 mm, distance = 0.81 um
17-03-18 05:16:48.974 -07 000000610 INF: FPGA: Xmit ZDACW 36473\n [Z Motor]
17-03-18 05:16:48.974 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:16:48.984 -07 000000610 INF: FPGA: 'ZDACW 36473' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:48.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:48.984 -07 000000424 INF: FPGA: Recv ZDACR 36473
17-03-18 05:16:48.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:48.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:49.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35282
17-03-18 05:16:49.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:49.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.154 -07 000000512 INF: FPGA: Recv ZSGSRD 35278
17-03-18 05:16:49.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.174 -07 000000480 INF: FPGA: Recv ZSGSRD 35280
17-03-18 05:16:49.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:49.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.184 -07 000000502 INF: FPGA: Recv ZSGSRD 35282
17-03-18 05:16:49.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.194 -07 000000618 INF: FPGA: Recv ZSGSRD 35275
17-03-18 05:16:49.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.204 -07 000000447 INF: FPGA: Recv ZSGSRD 35274
17-03-18 05:16:49.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.214 -07 000000382 INF: FPGA: Recv ZSGSRD 35283
17-03-18 05:16:49.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.224 -07 000000501 INF: FPGA: Recv ZSGSRD 35278
17-03-18 05:16:49.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.234 -07 000000606 INF: FPGA: Recv ZSGSRD 35280
17-03-18 05:16:49.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:49.244 -07 000000455 INF: FPGA: Recv ZSGSRD 35282
17-03-18 05:16:49.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:49.254 -07 000000479 INF: FPGA: Recv ZPIEZORD 30971
17-03-18 05:16:49.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:49.264 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.5 V.
17-03-18 05:16:49.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35279 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35274 (-166.1 uncal um), Max = 35283 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:49.264 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35279, posNoise = 4, negNoise = 5
17-03-18 05:16:49.264 -07 000000610 INF: Z Motor: After move to -0.166963, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:49.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 05:16:49.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:49.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:49.264 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:49.264 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:49.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:49.264 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:49.264 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:49.264 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:49.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:49.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:49.264 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:49.264 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:49.274 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:49.274 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:49.274 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:49.274 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:49.284 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:16:49.284 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:49.284 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:16:49.284 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:49.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36649 150\n [Camera]
17-03-18 05:16:49.484 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.018051,
17-03-18 05:16:49.494 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:16:49.924 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:49.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:49.924 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:49.924 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:49.924 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:16:49.924 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:49.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:49.924 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:50.054 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:50.054 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:16:50.114 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36649 820
17-03-18 05:16:50.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:50.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:16:50.304 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:16:50.304 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:50.314 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:50.314 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:16:50.424 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:16:50.424 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:16:50.424 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:50.434 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:50.434 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 05:16:50.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:50.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:50.474 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:50.474 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:50.474 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:16:50.474 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:50.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:50.484 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:50.484 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:50.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:16:50.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:16:50.664 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:50.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36649 150' command took 2 ms to send, 1368 ms to get response, and 1378 ms overall
17-03-18 05:16:50.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:16:50.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.16696313216032. ------
17-03-18 05:16:50.674 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:50.674 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17344 mm
17-03-18 05:16:50.674 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:50.674 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:50.674 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37889, sync = True, waitForSettling = False)
17-03-18 05:16:50.674 -07 000000502 INF: Z Motor: Moving to -0.173445 mm, started at -0.166963 mm, distance = -6.48 um
17-03-18 05:16:50.674 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:16:50.674 -07 000000606 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:16:50.684 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:50.684 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:50.684 -07 000000480 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:16:50.694 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:50.694 -07 000000606 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:50.694 -07 000000606 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:50.694 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:16:50.694 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:16:50.704 -07 000000502 INF: FPGA: Xmit ZDACW 37889\n [Z Motor]
17-03-18 05:16:50.704 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:16:50.714 -07 000000502 INF: FPGA: 'ZDACW 37889' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:16:50.714 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:50.724 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:50.724 -07 000000467 INF: FPGA: Recv ZDACR 37889
17-03-18 05:16:50.734 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:50.734 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:16:50.864 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:16:50.864 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:16:50.864 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:50.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:16:50.864 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:16:50.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:50.864 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:50.864 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:16:50.864 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:50.874 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:16:50.894 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:16:50.894 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 05:16:51.084 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:16:51.084 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:16:51.134 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:51.144 -07 000000480 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:16:51.144 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:16:51.144 -07 000000606 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:51.144 -07 000000606 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:16:51.144 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 05:16:51.744 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:52.094 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:52.094 -07 000000512 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:16:52.104 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:52.104 -07 000000606 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:52.134 -07 000000606 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:52.134 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:16:52.134 -07 000000606 INF: Y Motor: Moved to 72.3486 after 1451 ms (table move)
17-03-18 05:16:52.134 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173445 mm (DAC = 37889)
17-03-18 05:16:52.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.134 -07 000000579 INF: FPGA: Recv ZSGSRD 36294
17-03-18 05:16:52.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:16:52.144 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.144 -07 000000455 INF: FPGA: Recv ZSGSRD 36287
17-03-18 05:16:52.154 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.154 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.154 -07 000000474 INF: FPGA: Recv ZSGSRD 36284
17-03-18 05:16:52.164 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.164 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36285
17-03-18 05:16:52.174 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.174 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.174 -07 000000501 INF: FPGA: Recv ZSGSRD 36286
17-03-18 05:16:52.184 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.184 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.184 -07 000000480 INF: FPGA: Recv ZSGSRD 36287
17-03-18 05:16:52.194 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.194 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.194 -07 000000618 INF: FPGA: Recv ZSGSRD 36296
17-03-18 05:16:52.204 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.204 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.204 -07 000000455 INF: FPGA: Recv ZSGSRD 36297
17-03-18 05:16:52.214 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.214 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.214 -07 000000479 INF: FPGA: Recv ZSGSRD 36291
17-03-18 05:16:52.224 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.224 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:52.224 -07 000000625 INF: FPGA: Recv ZSGSRD 36287
17-03-18 05:16:52.234 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.234 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:52.234 -07 000000474 INF: FPGA: Recv ZPIEZORD 32326
17-03-18 05:16:52.244 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:52.244 -07 000000581 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.8 V.
17-03-18 05:16:52.244 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36289 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36287 (-172.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36284 (-172.5 uncal um), Max = 36297 (-172.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:16:52.244 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36289, posNoise = 8, negNoise = 5
17-03-18 05:16:52.244 -07 000000581 INF: Z Motor: After move to -0.173445, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:52.244 -07 000000581 INF: Z Motor: Settle wait time = 1455 ms, measure time = 106 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:16:52.244 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:52.294 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:16:52.294 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:52.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:52.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:52.294 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:52.294 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:52.294 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:16:52.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:52.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:52.294 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:16:52.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:16:52.304 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:16:52.314 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:16:52.314 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:16:52.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:16:52.364 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:16:52.664 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:16:52.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:16:52.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:16:52.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:16:52.704 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:16:52.704 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:16:52.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 05:16:52.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:16:52.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:52.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:16:52.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:16:52.804 -07 000000608 INF: Autofocus start
17-03-18 05:16:52.804 -07 000000608 INF: MeasureProfile start
17-03-18 05:16:52.804 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:16:52.804 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:16:52.814 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:52.814 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:16:52.814 -07 000000608 INF: MeasureProfile done
17-03-18 05:16:52.814 -07 000000608 INF: X=-32  Z correction [um]=-0.2344
17-03-18 05:16:52.814 -07 000000608 INF: Autofocus finished
17-03-18 05:16:53.014 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:16:53.014 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:16:53.014 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173451586423498. ----------
17-03-18 05:16:53.014 -07 000000610 INF: Cycle	135	Tile	16	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:53.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36350, sync = True, waitForSettling = True)
17-03-18 05:16:53.024 -07 000000610 INF: Z Motor: Moving to -0.166400 mm, started at -0.173452 mm, distance = 7.05 um
17-03-18 05:16:53.024 -07 000000610 INF: FPGA: Xmit ZDACW 36350\n [Z Motor]
17-03-18 05:16:53.024 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:16:53.034 -07 000000610 INF: FPGA: 'ZDACW 36350' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:53.034 -07 000000618 INF: FPGA: Recv ZDACR 36350
17-03-18 05:16:53.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:53.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.194 -07 000000479 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:16:53.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.204 -07 000000512 INF: FPGA: Recv ZSGSRD 35195
17-03-18 05:16:53.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.214 -07 000000455 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:16:53.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.224 -07 000000461 INF: FPGA: Recv ZSGSRD 35190
17-03-18 05:16:53.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.234 -07 000000618 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:16:53.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.244 -07 000000479 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:16:53.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.254 -07 000000625 INF: FPGA: Recv ZSGSRD 35196
17-03-18 05:16:53.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.264 -07 000000455 INF: FPGA: Recv ZSGSRD 35190
17-03-18 05:16:53.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.274 -07 000000581 INF: FPGA: Recv ZSGSRD 35188
17-03-18 05:16:53.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:53.284 -07 000000608 INF: FPGA: Recv ZSGSRD 35193
17-03-18 05:16:53.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:53.294 -07 000000626 INF: FPGA: Recv ZPIEZORD 30859
17-03-18 05:16:53.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:53.304 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.5 V.
17-03-18 05:16:53.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35192 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35191 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35188 (-165.5 uncal um), Max = 35196 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:16:53.304 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35192, posNoise = 4, negNoise = 4
17-03-18 05:16:53.304 -07 000000610 INF: Z Motor: After move to -0.166400, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:53.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:16:53.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:53.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:53.304 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:53.304 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:53.304 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:53.304 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:53.304 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:53.304 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:53.304 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:16:53.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:53.304 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:16:53.304 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:53.314 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:53.314 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:53.314 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:16:53.314 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:53.314 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:16:53.314 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:16:53.324 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:16:53.324 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:16:53.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36527 150\n [Camera]
17-03-18 05:16:53.524 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:53.954 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:53.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:53.964 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:53.964 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:53.964 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:16:53.964 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:53.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:53.964 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:53.964 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:53.964 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:16:54.154 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36527 820
17-03-18 05:16:54.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:16:54.334 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:16:54.334 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:16:54.334 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:54.344 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:16:54.344 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:16:54.344 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:54.344 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:54.344 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:54.344 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:16:54.354 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:16:54.514 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:54.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:54.514 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:54.634 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:54.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:16:54.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:54.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:54.634 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:54.634 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:54.634 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:16:54.704 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:16:54.704 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:54.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36527 150' command took 2 ms to send, 1373 ms to get response, and 1379 ms overall
17-03-18 05:16:54.704 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.166831
17-03-18 05:16:54.704 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16683 mm
17-03-18 05:16:54.704 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:54.704 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:16:54.704 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:16:54.704 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:54.704 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 36444, sync = True, waitForSettling = False)
17-03-18 05:16:54.704 -07 000000581 INF: Z Motor: Moving to -0.166830 mm, started at -0.166404 mm, distance = -0.43 um
17-03-18 05:16:54.714 -07 000000581 INF: FPGA: Xmit ZDACW 36444\n [Z Motor]
17-03-18 05:16:54.714 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:16:54.714 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:54.714 -07 000000618 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:54.714 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:54.714 -07 000000618 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:16:54.714 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:16:54.724 -07 000000581 INF: FPGA: 'ZDACW 36444' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:16:54.724 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:54.734 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:54.734 -07 000000474 INF: FPGA: Recv ZDACR 36444
17-03-18 05:16:54.744 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:54.744 -07 000000581 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:16:54.954 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.039839,
17-03-18 05:16:55.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:16:55.034 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:16:55.034 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:16:55.034 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:55.034 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:16:55.034 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:55.044 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:16:55.044 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:16:55.044 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 05:16:55.044 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:16:55.094 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:16:55.094 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:16:55.144 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:55.154 -07 000000625 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:16:55.154 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:55.154 -07 000000618 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:55.154 -07 000000618 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:16:55.154 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 05:16:56.104 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:56.104 -07 000000480 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:16:56.114 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.114 -07 000000618 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:56.144 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:56.144 -07 000000618 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:56.144 -07 000000618 INF: Y Motor: Moved to 73.1748 after 1433 ms (table move)
17-03-18 05:16:56.144 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166830 mm (DAC = 36444)
17-03-18 05:16:56.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35257
17-03-18 05:16:56.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:16:56.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.154 -07 000000581 INF: FPGA: Recv ZSGSRD 35260
17-03-18 05:16:56.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.164 -07 000000455 INF: FPGA: Recv ZSGSRD 35268
17-03-18 05:16:56.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.174 -07 000000480 INF: FPGA: Recv ZSGSRD 35254
17-03-18 05:16:56.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.184 -07 000000618 INF: FPGA: Recv ZSGSRD 35263
17-03-18 05:16:56.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.194 -07 000000606 INF: FPGA: Recv ZSGSRD 35261
17-03-18 05:16:56.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.204 -07 000000467 INF: FPGA: Recv ZSGSRD 35259
17-03-18 05:16:56.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.214 -07 000000424 INF: FPGA: Recv ZSGSRD 35262
17-03-18 05:16:56.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.224 -07 000000479 INF: FPGA: Recv ZSGSRD 35253
17-03-18 05:16:56.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35265
17-03-18 05:16:56.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:56.244 -07 000000447 INF: FPGA: Recv ZPIEZORD 30976
17-03-18 05:16:56.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.254 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.4 V.
17-03-18 05:16:56.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35260 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35260 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35253 (-165.9 uncal um), Max = 35268 (-166.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:56.254 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35260, posNoise = 8, negNoise = 7
17-03-18 05:16:56.254 -07 000000610 INF: Z Motor: After move to -0.166830, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:56.254 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-18 05:16:56.254 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:56.304 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 05:16:56.304 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:56.304 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.166841072129626. ----------
17-03-18 05:16:56.304 -07 000000610 INF: Cycle	135	Tile	17	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:56.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36267, sync = True, waitForSettling = True)
17-03-18 05:16:56.304 -07 000000610 INF: Z Motor: Moving to -0.166020 mm, started at -0.166841 mm, distance = 0.82 um
17-03-18 05:16:56.304 -07 000000610 INF: FPGA: Xmit ZDACW 36267\n [Z Motor]
17-03-18 05:16:56.304 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:16:56.314 -07 000000610 INF: FPGA: 'ZDACW 36267' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:56.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:56.314 -07 000000424 INF: FPGA: Recv ZDACR 36267
17-03-18 05:16:56.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:56.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.474 -07 000000606 INF: FPGA: Recv ZSGSRD 35131
17-03-18 05:16:56.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:56.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.484 -07 000000625 INF: FPGA: Recv ZSGSRD 35138
17-03-18 05:16:56.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.494 -07 000000474 INF: FPGA: Recv ZSGSRD 35137
17-03-18 05:16:56.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.504 -07 000000608 INF: FPGA: Recv ZSGSRD 35136
17-03-18 05:16:56.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.514 -07 000000618 INF: FPGA: Recv ZSGSRD 35136
17-03-18 05:16:56.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35131
17-03-18 05:16:56.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.534 -07 000000467 INF: FPGA: Recv ZSGSRD 35132
17-03-18 05:16:56.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35127
17-03-18 05:16:56.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.554 -07 000000608 INF: FPGA: Recv ZSGSRD 35132
17-03-18 05:16:56.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:56.564 -07 000000501 INF: FPGA: Recv ZSGSRD 35137
17-03-18 05:16:56.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:56.574 -07 000000606 INF: FPGA: Recv ZPIEZORD 30792
17-03-18 05:16:56.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:56.584 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.6 V.
17-03-18 05:16:56.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35134 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35134 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35127 (-165.1 uncal um), Max = 35138 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:16:56.584 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35134, posNoise = 4, negNoise = 7
17-03-18 05:16:56.584 -07 000000610 INF: Z Motor: After move to -0.166020, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:56.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:16:56.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:56.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:56.584 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:56.584 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:56.584 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:56.584 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:56.584 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:56.584 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:56.584 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:56.584 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:56.584 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:56.584 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:56.594 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:56.594 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:56.594 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:16:56.594 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:16:56.604 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:16:56.604 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:56.604 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:16:56.604 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:16:56.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36444 150\n [Camera]
17-03-18 05:16:56.744 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:16:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:16:56.814 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:16:57.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:16:57.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:16:57.244 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:57.244 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:57.244 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:16:57.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:16:57.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:16:57.244 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:57.244 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:57.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:16:57.434 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36444 820
17-03-18 05:16:57.594 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:16:57.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:16:57.624 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:16:57.624 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:57.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:16:57.624 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:16:57.624 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:57.624 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:57.624 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:16:57.624 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:16:57.634 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:16:57.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:16:57.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:16:57.794 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:16:57.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:16:57.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:16:57.804 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:16:57.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:16:57.804 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:16:57.804 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:16:57.804 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:16:57.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1373
17-03-18 05:16:57.994 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:16:57.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36444 150' command took 2 ms to send, 1371 ms to get response, and 1380 ms overall
17-03-18 05:16:57.994 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.165793
17-03-18 05:16:57.994 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16579 mm
17-03-18 05:16:57.994 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:16:57.994 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:16:57.994 -07 000000512 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:16:57.994 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:57.994 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 36217, sync = True, waitForSettling = False)
17-03-18 05:16:57.994 -07 000000581 INF: Z Motor: Moving to -0.165791 mm, started at -0.166032 mm, distance = 0.24 um
17-03-18 05:16:57.994 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:16:58.004 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:58.004 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:58.004 -07 000000512 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:16:58.004 -07 000000512 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:16:58.124 -07 000000581 INF: FPGA: Xmit ZDACW 36217\n [Z Motor]
17-03-18 05:16:58.134 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:16:58.134 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:16:58.134 -07 000000581 INF: FPGA: 'ZDACW 36217' command took 127 ms to send, 0 ms to get response, and 134 ms overall
17-03-18 05:16:58.144 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:58.144 -07 000000625 INF: FPGA: Recv ZDACR 36217
17-03-18 05:16:58.154 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:16:58.154 -07 000000581 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-18 05:16:58.184 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:16:58.184 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:16:58.184 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:58.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:16:58.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:16:58.184 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:16:58.194 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:58.194 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:16:58.194 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:16:58.204 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:16:58.504 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:16:58.504 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 05:16:58.554 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:58.554 -07 000000581 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:16:58.564 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:58.564 -07 000000512 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:58.564 -07 000000512 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:16:58.564 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.848 mm, average velocity = 1.672 mm/sec
17-03-18 05:16:59.514 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:16:59.514 -07 000000608 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:16:59.524 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:59.524 -07 000000512 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:16:59.544 -07 000000512 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:16:59.544 -07 000000512 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:16:59.544 -07 000000512 INF: Y Motor: Moved to 74.0068 after 1548 ms (table move)
17-03-18 05:16:59.544 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165791 mm (DAC = 36217)
17-03-18 05:16:59.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35103
17-03-18 05:16:59.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.554 -07 000000461 INF: FPGA: Recv ZSGSRD 35105
17-03-18 05:16:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.564 -07 000000474 INF: FPGA: Recv ZSGSRD 35099
17-03-18 05:16:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.574 -07 000000581 INF: FPGA: Recv ZSGSRD 35093
17-03-18 05:16:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.584 -07 000000424 INF: FPGA: Recv ZSGSRD 35097
17-03-18 05:16:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.594 -07 000000480 INF: FPGA: Recv ZSGSRD 35096
17-03-18 05:16:59.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.604 -07 000000447 INF: FPGA: Recv ZSGSRD 35095
17-03-18 05:16:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.614 -07 000000382 INF: FPGA: Recv ZSGSRD 35102
17-03-18 05:16:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.624 -07 000000479 INF: FPGA: Recv ZSGSRD 35101
17-03-18 05:16:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.634 -07 000000625 INF: FPGA: Recv ZSGSRD 35100
17-03-18 05:16:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:59.644 -07 000000467 INF: FPGA: Recv ZPIEZORD 30766
17-03-18 05:16:59.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.654 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.526 V. Piezo Error = -9.5 V.
17-03-18 05:16:59.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35099 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35100 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35093 (-164.9 uncal um), Max = 35105 (-165.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:59.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35099, posNoise = 6, negNoise = 6
17-03-18 05:16:59.654 -07 000000610 INF: Z Motor: After move to -0.165791, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:59.654 -07 000000610 INF: Z Motor: Settle wait time = 1550 ms, measure time = 104 ms (allowed 150 ms), total time = 1654 ms
17-03-18 05:16:59.654 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:16:59.704 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-18 05:16:59.704 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:16:59.704 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.165806773974803. ----------
17-03-18 05:16:59.704 -07 000000610 INF: Cycle	135	Tile	18	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:16:59.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36041, sync = True, waitForSettling = True)
17-03-18 05:16:59.704 -07 000000610 INF: Z Motor: Moving to -0.164985 mm, started at -0.165807 mm, distance = 0.82 um
17-03-18 05:16:59.704 -07 000000610 INF: FPGA: Xmit ZDACW 36041\n [Z Motor]
17-03-18 05:16:59.704 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:16:59.714 -07 000000610 INF: FPGA: 'ZDACW 36041' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:16:59.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:16:59.714 -07 000000618 INF: FPGA: Recv ZDACR 36041
17-03-18 05:16:59.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:16:59.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.874 -07 000000569 INF: FPGA: Recv ZSGSRD 34980
17-03-18 05:16:59.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:16:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.884 -07 000000455 INF: FPGA: Recv ZSGSRD 34978
17-03-18 05:16:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.894 -07 000000480 INF: FPGA: Recv ZSGSRD 34968
17-03-18 05:16:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.904 -07 000000512 INF: FPGA: Recv ZSGSRD 34971
17-03-18 05:16:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.914 -07 000000626 INF: FPGA: Recv ZSGSRD 34971
17-03-18 05:16:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.924 -07 000000581 INF: FPGA: Recv ZSGSRD 34975
17-03-18 05:16:59.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.934 -07 000000501 INF: FPGA: Recv ZSGSRD 34977
17-03-18 05:16:59.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.944 -07 000000480 INF: FPGA: Recv ZSGSRD 34975
17-03-18 05:16:59.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.954 -07 000000608 INF: FPGA: Recv ZSGSRD 34974
17-03-18 05:16:59.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:16:59.964 -07 000000447 INF: FPGA: Recv ZSGSRD 34972
17-03-18 05:16:59.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:16:59.974 -07 000000461 INF: FPGA: Recv ZPIEZORD 30615
17-03-18 05:16:59.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:16:59.984 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.500 V. Piezo Error = -9.6 V.
17-03-18 05:16:59.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34974 (-164.1 uncal um), Error = 0.8 uncal um, Median = 34974 (-164.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34968 (-164.1 uncal um), Max = 34980 (-164.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:16:59.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34974, posNoise = 6, negNoise = 6
17-03-18 05:16:59.984 -07 000000610 INF: Z Motor: After move to -0.164985, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:16:59.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 05:16:59.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:16:59.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:16:59.984 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:16:59.984 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:16:59.984 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:16:59.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:16:59.984 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:16:59.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:16:59.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:16:59.984 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:16:59.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:16:59.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:16:59.994 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:16:59.994 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:16:59.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:16:59.994 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:00.004 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:17:00.004 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:17:00.004 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:17:00.004 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:17:00.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36217 150\n [Camera]
17-03-18 05:17:00.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:00.314 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.033041,
17-03-18 05:17:00.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:00.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:00.644 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:00.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:00.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:00.644 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:00.644 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:00.644 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:17:00.654 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:00.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:17:00.834 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36217 820
17-03-18 05:17:00.984 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:01.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:17:01.024 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:17:01.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:01.024 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:01.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:17:01.034 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:17:01.034 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:17:01.034 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:01.034 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:01.034 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:17:01.194 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:01.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:01.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:01.194 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:01.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:17:01.194 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:01.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:01.194 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:01.194 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:01.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:17:01.384 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:01.384 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:01.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36217 150' command took 2 ms to send, 1369 ms to get response, and 1381 ms overall
17-03-18 05:17:01.394 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165318
17-03-18 05:17:01.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16532 mm
17-03-18 05:17:01.394 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:01.394 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:17:01.394 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:17:01.394 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:01.394 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 36114, sync = True, waitForSettling = False)
17-03-18 05:17:01.394 -07 000000502 INF: Z Motor: Moving to -0.165319 mm, started at -0.165004 mm, distance = -0.32 um
17-03-18 05:17:01.394 -07 000000581 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:17:01.404 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:01.404 -07 000000512 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:01.404 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:01.404 -07 000000512 INF: Y Motor: Moving 1353 steps-32
17-03-18 05:17:01.404 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:01.414 -07 000000502 INF: FPGA: Xmit ZDACW 36114\n [Z Motor]
17-03-18 05:17:01.414 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:17:01.424 -07 000000502 INF: FPGA: 'ZDACW 36114' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:17:01.424 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:01.424 -07 000000626 INF: FPGA: Recv ZDACR 36114
17-03-18 05:17:01.434 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:01.434 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:17:01.574 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:17:01.574 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:17:01.574 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:01.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:17:01.574 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:17:01.574 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:01.584 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:01.584 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:01.584 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:17:01.584 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:17:01.744 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:01.774 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:17:01.774 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 05:17:01.814 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:01.814 -07 000000480 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:17:01.824 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:01.824 -07 000000512 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:01.824 -07 000000512 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:17:01.824 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.237 mm/sec
17-03-18 05:17:02.774 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:02.774 -07 000000461 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:17:02.784 -07 000000512 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:02.784 -07 000000512 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:02.794 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:02.804 -07 000000512 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:02.804 -07 000000512 INF: Y Motor: Moved to 74.8306 after 1405 ms (table move)
17-03-18 05:17:02.804 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165319 mm (DAC = 36114)
17-03-18 05:17:02.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.804 -07 000000581 INF: FPGA: Recv ZSGSRD 35028
17-03-18 05:17:02.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:17:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.814 -07 000000502 INF: FPGA: Recv ZSGSRD 35021
17-03-18 05:17:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:17:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.834 -07 000000608 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:17:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.844 -07 000000512 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:17:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.854 -07 000000480 INF: FPGA: Recv ZSGSRD 35018
17-03-18 05:17:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.864 -07 000000501 INF: FPGA: Recv ZSGSRD 35027
17-03-18 05:17:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35025
17-03-18 05:17:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.884 -07 000000382 INF: FPGA: Recv ZSGSRD 35022
17-03-18 05:17:02.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:02.894 -07 000000512 INF: FPGA: Recv ZSGSRD 35028
17-03-18 05:17:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:02.904 -07 000000447 INF: FPGA: Recv ZPIEZORD 30734
17-03-18 05:17:02.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.914 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.511 V. Piezo Error = -9.5 V.
17-03-18 05:17:02.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35025 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35027 (-164.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35018 (-164.4 uncal um), Max = 35030 (-164.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:17:02.914 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35025, posNoise = 5, negNoise = 7
17-03-18 05:17:02.914 -07 000000610 INF: Z Motor: After move to -0.165319, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:02.914 -07 000000610 INF: Z Motor: Settle wait time = 1405 ms, measure time = 110 ms (allowed 150 ms), total time = 1515 ms
17-03-18 05:17:02.914 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:02.954 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1558 ms
17-03-18 05:17:02.954 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:02.954 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.165331382276312. ----------
17-03-18 05:17:02.954 -07 000000610 INF: Cycle	135	Tile	19	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:02.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35937, sync = True, waitForSettling = True)
17-03-18 05:17:02.954 -07 000000610 INF: Z Motor: Moving to -0.164509 mm, started at -0.165331 mm, distance = 0.82 um
17-03-18 05:17:02.954 -07 000000610 INF: FPGA: Xmit ZDACW 35937\n [Z Motor]
17-03-18 05:17:02.954 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:17:02.964 -07 000000610 INF: FPGA: 'ZDACW 35937' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:02.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:02.964 -07 000000467 INF: FPGA: Recv ZDACR 35937
17-03-18 05:17:02.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:02.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:03.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.124 -07 000000480 INF: FPGA: Recv ZSGSRD 34897
17-03-18 05:17:03.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:03.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.134 -07 000000512 INF: FPGA: Recv ZSGSRD 34894
17-03-18 05:17:03.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.144 -07 000000461 INF: FPGA: Recv ZSGSRD 34902
17-03-18 05:17:03.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.154 -07 000000382 INF: FPGA: Recv ZSGSRD 34902
17-03-18 05:17:03.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.164 -07 000000479 INF: FPGA: Recv ZSGSRD 34897
17-03-18 05:17:03.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.174 -07 000000608 INF: FPGA: Recv ZSGSRD 34899
17-03-18 05:17:03.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.184 -07 000000455 INF: FPGA: Recv ZSGSRD 34892
17-03-18 05:17:03.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.194 -07 000000625 INF: FPGA: Recv ZSGSRD 34901
17-03-18 05:17:03.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.204 -07 000000579 INF: FPGA: Recv ZSGSRD 34895
17-03-18 05:17:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:03.214 -07 000000569 INF: FPGA: Recv ZSGSRD 34900
17-03-18 05:17:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:03.224 -07 000000382 INF: FPGA: Recv ZPIEZORD 30555
17-03-18 05:17:03.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:03.234 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.484 V. Piezo Error = -9.6 V.
17-03-18 05:17:03.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.5 um, Read 10 ADC samples: Avg = 34898 (-163.7 uncal um), Error = 0.9 uncal um, Median = 34898 (-163.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34892 (-163.6 uncal um), Max = 34902 (-163.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:17:03.234 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34898, posNoise = 4, negNoise = 6
17-03-18 05:17:03.234 -07 000000610 INF: Z Motor: After move to -0.164509, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:03.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:03.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:03.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:03.234 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:03.234 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:03.234 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:03.234 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:03.234 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:03.234 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:03.234 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:03.234 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:03.234 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:03.234 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:03.244 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:17:03.244 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:03.244 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:03.244 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:03.254 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:17:03.254 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:03.254 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:17:03.254 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:03.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 36114 150\n [Camera]
17-03-18 05:17:03.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:03.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:03.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:03.894 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:03.894 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:03.894 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:17:03.894 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:03.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:03.894 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:03.894 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:03.894 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:17:04.094 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36114 820
17-03-18 05:17:04.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:04.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:17:04.274 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:17:04.274 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:04.274 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:17:04.274 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:17:04.274 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:04.274 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:04.284 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:17:04.284 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:04.284 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:17:04.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:04.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:04.444 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:04.444 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:04.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:17:04.454 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:04.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:04.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:04.454 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:04.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:17:04.634 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:04.634 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:04.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 36114 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:17:04.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:17:04.834 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:17:04.834 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:04.834 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:17:04.834 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:17:04.834 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:04.844 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:17:04.844 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:17:04.844 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:17:04.844 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:04.854 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:17:04.884 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:17:04.884 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:17:04.924 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 05:17:04.924 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:17:04.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:17:04.934 -07 000000579 INF: FPGA: Recv EMCUR 
17-03-18 05:17:04.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:17:04.934 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:17:05.434 -07 000000625 INF: FPGA: Recv EMIN
17-03-18 05:17:05.434 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 05:17:05.434 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:17:05.434 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-18 05:17:05.444 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:05.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:17:05.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164515507334309. ------
17-03-18 05:17:05.444 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:05.444 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13930 mm
17-03-18 05:17:05.444 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:05.444 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:05.444 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:17:05.444 -07 000000606 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 05:17:05.444 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30430, sync = True, waitForSettling = False)
17-03-18 05:17:05.444 -07 000000618 INF: Z Motor: Moving to -0.139300 mm, started at -0.164516 mm, distance = 25.22 um
17-03-18 05:17:05.454 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:05.454 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:05.454 -07 000000455 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:17:05.464 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:05.464 -07 000000618 INF: FPGA: Xmit ZDACW 30430\n [Z Motor]
17-03-18 05:17:05.464 -07 000000606 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:05.464 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:17:05.464 -07 000000606 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:17:05.464 -07 000000606 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:17:05.474 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:17:05.474 -07 000000618 INF: FPGA: 'ZDACW 30430' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:17:05.484 -07 000000606 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:17:05.494 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:05.494 -07 000000625 INF: FPGA: Recv ZDACR 30430
17-03-18 05:17:05.504 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:17:05.504 -07 000000618 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:17:05.674 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.016692,
17-03-18 05:17:05.674 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:17:05.674 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:17:06.754 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:06.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:07.104 -07 000000581 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 05:17:07.104 -07 000000606 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-18 05:17:07.104 -07 000000606 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:17:07.104 -07 000000606 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:17:07.104 -07 000000606 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.918 mm, average velocity = 9.080 mm/sec
17-03-18 05:17:09.954 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:09.954 -07 000000512 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:17:09.964 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:09.964 -07 000000606 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:10.004 -07 000000606 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:10.004 -07 000000606 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:17:10.004 -07 000000606 INF: Y Motor: Moved to 59.9102 after 4552 ms
17-03-18 05:17:10.004 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139300 mm (DAC = 30430)
17-03-18 05:17:10.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30972
17-03-18 05:17:10.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:10.014 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.014 -07 000000579 INF: FPGA: Recv ZSGSRD 30971
17-03-18 05:17:10.024 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.024 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.024 -07 000000455 INF: FPGA: Recv ZSGSRD 30978
17-03-18 05:17:10.034 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.034 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30974
17-03-18 05:17:10.044 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.044 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.044 -07 000000625 INF: FPGA: Recv ZSGSRD 30971
17-03-18 05:17:10.054 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.054 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.054 -07 000000608 INF: FPGA: Recv ZSGSRD 30975
17-03-18 05:17:10.064 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.064 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.064 -07 000000579 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:17:10.074 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.074 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.074 -07 000000455 INF: FPGA: Recv ZSGSRD 30973
17-03-18 05:17:10.084 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.084 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.084 -07 000000467 INF: FPGA: Recv ZSGSRD 30978
17-03-18 05:17:10.094 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.094 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:10.094 -07 000000625 INF: FPGA: Recv ZSGSRD 30972
17-03-18 05:17:10.104 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.104 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:10.104 -07 000000608 INF: FPGA: Recv ZPIEZORD 26449
17-03-18 05:17:10.114 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.114 -07 000000382 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.9 V.
17-03-18 05:17:10.114 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30974 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30973 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30971 (-138.5 uncal um), Max = 30978 (-138.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:17:10.114 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30974, posNoise = 4, negNoise = 3
17-03-18 05:17:10.114 -07 000000382 INF: Z Motor: After move to -0.139300, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:10.114 -07 000000382 INF: Z Motor: Settle wait time = 4555 ms, measure time = 105 ms (allowed 150 ms), total time = 4660 ms
17-03-18 05:17:10.114 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:10.164 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-18 05:17:10.164 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:10.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:10.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:10.174 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:10.174 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:10.174 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:17:10.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:10.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:10.174 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:17:10.194 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 05:17:10.194 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:17:10.194 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:17:10.194 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:17:10.204 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:17:10.204 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 05:17:10.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:17:10.254 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:17:10.544 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:17:10.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:17:10.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:17:10.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:17:10.584 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:17:10.594 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:17:10.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 05:17:10.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:17:10.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:10.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:17:10.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:17:10.694 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:10.694 -07 000000618 INF: Image SNR check: start
17-03-18 05:17:10.694 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:10.704 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:10.704 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:17:10.704 -07 000000618 INF: Image SNR check: pass  [peak (Max-Min)=123.01]
17-03-18 05:17:10.704 -07 000000618 INF: Autofocus start
17-03-18 05:17:10.704 -07 000000618 INF: MeasureProfile start
17-03-18 05:17:10.724 -07 000000618 INF: MeasureProfile done
17-03-18 05:17:10.724 -07 000000618 INF: X=28  Z correction [um]=0.1107426
17-03-18 05:17:10.724 -07 000000618 INF: Autofocus finished
17-03-18 05:17:10.904 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:17:10.904 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:17:10.914 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139306898890039. ----------
17-03-18 05:17:10.914 -07 000000610 INF: Cycle	135	Tile	1	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:10.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28966, sync = True, waitForSettling = True)
17-03-18 05:17:10.914 -07 000000610 INF: Z Motor: Moving to -0.132598 mm, started at -0.139307 mm, distance = 6.71 um
17-03-18 05:17:10.914 -07 000000610 INF: FPGA: Xmit ZDACW 28966\n [Z Motor]
17-03-18 05:17:10.924 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:17:10.934 -07 000000610 INF: FPGA: 'ZDACW 28966' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:10.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:10.934 -07 000000618 INF: FPGA: Recv ZDACR 28966
17-03-18 05:17:10.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:10.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:11.034 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.997626,
17-03-18 05:17:11.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.094 -07 000000461 INF: FPGA: Recv ZSGSRD 29931
17-03-18 05:17:11.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:11.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.104 -07 000000424 INF: FPGA: Recv ZSGSRD 29932
17-03-18 05:17:11.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.114 -07 000000480 INF: FPGA: Recv ZSGSRD 29927
17-03-18 05:17:11.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.124 -07 000000625 INF: FPGA: Recv ZSGSRD 29925
17-03-18 05:17:11.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.134 -07 000000626 INF: FPGA: Recv ZSGSRD 29925
17-03-18 05:17:11.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.144 -07 000000479 INF: FPGA: Recv ZSGSRD 29934
17-03-18 05:17:11.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.154 -07 000000608 INF: FPGA: Recv ZSGSRD 29934
17-03-18 05:17:11.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.164 -07 000000512 INF: FPGA: Recv ZSGSRD 29933
17-03-18 05:17:11.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.174 -07 000000474 INF: FPGA: Recv ZSGSRD 29931
17-03-18 05:17:11.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:11.184 -07 000000467 INF: FPGA: Recv ZSGSRD 29933
17-03-18 05:17:11.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:11.194 -07 000000461 INF: FPGA: Recv ZPIEZORD 25326
17-03-18 05:17:11.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:11.204 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -10.1 V.
17-03-18 05:17:11.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29930 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29925 (-131.8 uncal um), Max = 29934 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:11.204 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29930, posNoise = 4, negNoise = 5
17-03-18 05:17:11.204 -07 000000610 INF: Z Motor: After move to -0.132598, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:11.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:17:11.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:11.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:11.204 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:11.204 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:11.204 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:11.204 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:11.204 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:11.204 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:17:11.204 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:17:11.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:11.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 05:17:11.214 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:11.214 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:17:11.214 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:11.224 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:17:11.224 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:17:11.234 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 05:17:11.234 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:11.234 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:17:11.234 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:11.244 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:17:11.244 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 05:17:11.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 29143 150\n [Camera]
17-03-18 05:17:11.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:11.754 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:11.874 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:11.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:11.874 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:11.884 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:11.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:17:11.884 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:11.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:11.884 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:11.884 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:11.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:17:12.074 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29143 820
17-03-18 05:17:12.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:12.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:17:12.254 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:17:12.254 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:12.264 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:12.264 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:17:12.264 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:17:12.264 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:12.264 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:17:12.274 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:12.274 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:17:12.434 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:12.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:12.434 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:12.434 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:12.434 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:17:12.434 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:12.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:12.434 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:12.434 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:12.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:17:12.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:12.624 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:12.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 29143 150' command took 2 ms to send, 1375 ms to get response, and 1381 ms overall
17-03-18 05:17:12.624 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.132983
17-03-18 05:17:12.624 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13298 mm
17-03-18 05:17:12.624 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:12.624 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:17:12.624 -07 000000455 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:17:12.624 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29050, sync = True, waitForSettling = False)
17-03-18 05:17:12.624 -07 000000424 INF: Z Motor: Moving to -0.132982 mm, started at -0.132600 mm, distance = -0.38 um
17-03-18 05:17:12.634 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:12.634 -07 000000512 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:17:12.644 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:12.644 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:12.644 -07 000000455 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:12.644 -07 000000455 INF: Y Motor: Moving 1332 steps1
17-03-18 05:17:12.644 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:12.654 -07 000000424 INF: FPGA: Xmit ZDACW 29050\n [Z Motor]
17-03-18 05:17:12.654 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:17:12.664 -07 000000424 INF: FPGA: 'ZDACW 29050' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:17:12.664 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:12.664 -07 000000608 INF: FPGA: Recv ZDACR 29050
17-03-18 05:17:12.674 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:12.674 -07 000000424 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:17:12.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 410 ms.
17-03-18 05:17:12.844 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:17:12.844 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:12.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 409 ms.
17-03-18 05:17:12.844 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:17:12.844 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:12.844 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:12.854 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:17:12.854 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 05:17:12.854 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 05:17:13.014 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:17:13.014 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 05:17:13.064 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:13.064 -07 000000474 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:17:13.074 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:13.074 -07 000000455 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:13.074 -07 000000455 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:17:13.074 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.202 mm/sec
17-03-18 05:17:14.024 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:14.024 -07 000000606 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:17:14.034 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:14.034 -07 000000455 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:14.064 -07 000000455 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:14.064 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:17:14.064 -07 000000455 INF: Y Motor: Moved to 60.7324 after 1433 ms (table move)
17-03-18 05:17:14.064 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132982 mm (DAC = 29050)
17-03-18 05:17:14.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.064 -07 000000424 INF: FPGA: Recv ZSGSRD 29995
17-03-18 05:17:14.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:17:14.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.074 -07 000000447 INF: FPGA: Recv ZSGSRD 29998
17-03-18 05:17:14.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.084 -07 000000608 INF: FPGA: Recv ZSGSRD 29981
17-03-18 05:17:14.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.094 -07 000000625 INF: FPGA: Recv ZSGSRD 29985
17-03-18 05:17:14.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.104 -07 000000467 INF: FPGA: Recv ZSGSRD 29986
17-03-18 05:17:14.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.114 -07 000000581 INF: FPGA: Recv ZSGSRD 29988
17-03-18 05:17:14.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.124 -07 000000480 INF: FPGA: Recv ZSGSRD 29987
17-03-18 05:17:14.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29997
17-03-18 05:17:14.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.144 -07 000000461 INF: FPGA: Recv ZSGSRD 29990
17-03-18 05:17:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.154 -07 000000455 INF: FPGA: Recv ZSGSRD 29991
17-03-18 05:17:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:14.164 -07 000000569 INF: FPGA: Recv ZPIEZORD 25429
17-03-18 05:17:14.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.174 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -10.0 V.
17-03-18 05:17:14.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29990 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29989 (-132.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29981 (-132.1 uncal um), Max = 29998 (-132.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:17:14.174 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29990, posNoise = 8, negNoise = 9
17-03-18 05:17:14.174 -07 000000610 INF: Z Motor: After move to -0.132982, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:14.174 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-18 05:17:14.174 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:14.224 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 05:17:14.224 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:14.224 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.132985474142546. ----------
17-03-18 05:17:14.224 -07 000000610 INF: Cycle	135	Tile	2	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:14.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28874, sync = True, waitForSettling = True)
17-03-18 05:17:14.224 -07 000000610 INF: Z Motor: Moving to -0.132177 mm, started at -0.132985 mm, distance = 0.81 um
17-03-18 05:17:14.224 -07 000000610 INF: FPGA: Xmit ZDACW 28874\n [Z Motor]
17-03-18 05:17:14.224 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:17:14.234 -07 000000610 INF: FPGA: 'ZDACW 28874' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:14.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:14.234 -07 000000608 INF: FPGA: Recv ZDACR 28874
17-03-18 05:17:14.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:14.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:14.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.394 -07 000000424 INF: FPGA: Recv ZSGSRD 29869
17-03-18 05:17:14.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:14.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.404 -07 000000480 INF: FPGA: Recv ZSGSRD 29861
17-03-18 05:17:14.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.414 -07 000000382 INF: FPGA: Recv ZSGSRD 29858
17-03-18 05:17:14.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.424 -07 000000626 INF: FPGA: Recv ZSGSRD 29859
17-03-18 05:17:14.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.434 -07 000000606 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:17:14.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29869
17-03-18 05:17:14.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.454 -07 000000474 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:17:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.464 -07 000000382 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:17:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29864
17-03-18 05:17:14.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:14.484 -07 000000608 INF: FPGA: Recv ZSGSRD 29860
17-03-18 05:17:14.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:14.494 -07 000000626 INF: FPGA: Recv ZPIEZORD 25291
17-03-18 05:17:14.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:14.504 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -10.0 V.
17-03-18 05:17:14.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29863 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29862 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29858 (-131.4 uncal um), Max = 29869 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:14.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29863, posNoise = 6, negNoise = 5
17-03-18 05:17:14.504 -07 000000610 INF: Z Motor: After move to -0.132177, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:14.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:14.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:14.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:14.504 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:14.504 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:14.504 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:14.504 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:14.504 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:14.504 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:14.504 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:14.504 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:14.504 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:14.504 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:14.504 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:17:14.504 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:14.514 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:17:14.514 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:14.524 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:17:14.524 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:17:14.524 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:17:14.524 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:17:14.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 29050 150\n [Camera]
17-03-18 05:17:14.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:15.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:15.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:15.164 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:15.164 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:15.164 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:17:15.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:15.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:15.164 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:15.164 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:15.164 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:17:15.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29050 820
17-03-18 05:17:15.504 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:15.544 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:17:15.544 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:17:15.544 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:15.554 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:15.554 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:17:15.554 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:17:15.554 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:15.554 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:17:15.554 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:15.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:17:15.714 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:15.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:15.714 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:15.714 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:15.714 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:17:15.714 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:15.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:15.714 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:15.714 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:15.714 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:17:15.904 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:15.904 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:15.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 29050 150' command took 2 ms to send, 1366 ms to get response, and 1378 ms overall
17-03-18 05:17:15.904 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.132976
17-03-18 05:17:15.904 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13298 mm
17-03-18 05:17:15.904 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:15.914 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:17:15.914 -07 000000474 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:17:15.914 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:15.914 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29049, sync = True, waitForSettling = False)
17-03-18 05:17:15.914 -07 000000502 INF: Z Motor: Moving to -0.132978 mm, started at -0.132170 mm, distance = -0.81 um
17-03-18 05:17:15.914 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:17:15.924 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:15.924 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:15.924 -07 000000474 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:15.924 -07 000000474 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:17:15.924 -07 000000502 INF: FPGA: Xmit ZDACW 29049\n [Z Motor]
17-03-18 05:17:15.924 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:17:15.934 -07 000000502 INF: FPGA: 'ZDACW 29049' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:17:15.934 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:15.934 -07 000000625 INF: FPGA: Recv ZDACR 29049
17-03-18 05:17:15.944 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:15.944 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:15.944 -07 000000502 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 05:17:16.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:17:16.124 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:17:16.124 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:16.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:17:16.124 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:17:16.124 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:16.124 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:16.124 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:17:16.124 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:16.134 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:17:16.314 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:17:16.314 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:17:16.364 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:16.374 -07 000000382 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:17:16.374 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:17:16.374 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:16.374 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:17:16.374 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:17:16.394 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.986717,
17-03-18 05:17:16.754 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:16.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:17.324 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:17.324 -07 000000479 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:17:17.334 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:17.334 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:17.364 -07 000000474 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:17.364 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:17.364 -07 000000474 INF: Y Motor: Moved to 61.5630 after 1450 ms (table move)
17-03-18 05:17:17.364 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132978 mm (DAC = 29049)
17-03-18 05:17:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.364 -07 000000512 INF: FPGA: Recv ZSGSRD 29991
17-03-18 05:17:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.374 -07 000000447 INF: FPGA: Recv ZSGSRD 29994
17-03-18 05:17:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.384 -07 000000467 INF: FPGA: Recv ZSGSRD 29996
17-03-18 05:17:17.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.394 -07 000000455 INF: FPGA: Recv ZSGSRD 29982
17-03-18 05:17:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.404 -07 000000625 INF: FPGA: Recv ZSGSRD 29989
17-03-18 05:17:17.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.414 -07 000000579 INF: FPGA: Recv ZSGSRD 29988
17-03-18 05:17:17.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.424 -07 000000581 INF: FPGA: Recv ZSGSRD 29997
17-03-18 05:17:17.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.434 -07 000000480 INF: FPGA: Recv ZSGSRD 29988
17-03-18 05:17:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.444 -07 000000608 INF: FPGA: Recv ZSGSRD 29990
17-03-18 05:17:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.454 -07 000000382 INF: FPGA: Recv ZSGSRD 29991
17-03-18 05:17:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:17.464 -07 000000502 INF: FPGA: Recv ZPIEZORD 25511
17-03-18 05:17:17.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.474 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.8 V.
17-03-18 05:17:17.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29991 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29990 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29982 (-132.1 uncal um), Max = 29997 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:17:17.474 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29991, posNoise = 6, negNoise = 9
17-03-18 05:17:17.474 -07 000000610 INF: Z Motor: After move to -0.132978, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:17.474 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 109 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:17:17.474 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:17.524 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:17:17.524 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:17.524 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.132991898354688. ----------
17-03-18 05:17:17.524 -07 000000610 INF: Cycle	135	Tile	3	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:17.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28872, sync = True, waitForSettling = True)
17-03-18 05:17:17.524 -07 000000610 INF: Z Motor: Moving to -0.132168 mm, started at -0.132992 mm, distance = 0.82 um
17-03-18 05:17:17.524 -07 000000610 INF: FPGA: Xmit ZDACW 28872\n [Z Motor]
17-03-18 05:17:17.524 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:17:17.534 -07 000000610 INF: FPGA: 'ZDACW 28872' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:17.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:17.534 -07 000000606 INF: FPGA: Recv ZDACR 28872
17-03-18 05:17:17.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:17.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.694 -07 000000579 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:17:17.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:17.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.704 -07 000000382 INF: FPGA: Recv ZSGSRD 29870
17-03-18 05:17:17.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.714 -07 000000461 INF: FPGA: Recv ZSGSRD 29859
17-03-18 05:17:17.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.724 -07 000000608 INF: FPGA: Recv ZSGSRD 29858
17-03-18 05:17:17.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.734 -07 000000480 INF: FPGA: Recv ZSGSRD 29860
17-03-18 05:17:17.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.744 -07 000000479 INF: FPGA: Recv ZSGSRD 29865
17-03-18 05:17:17.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.754 -07 000000626 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:17:17.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.764 -07 000000467 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:17:17.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.774 -07 000000618 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:17:17.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:17.784 -07 000000455 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:17:17.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:17.794 -07 000000447 INF: FPGA: Recv ZPIEZORD 25302
17-03-18 05:17:17.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:17.804 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -10.0 V.
17-03-18 05:17:17.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29863 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29863 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29858 (-131.4 uncal um), Max = 29870 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:17.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29863, posNoise = 7, negNoise = 5
17-03-18 05:17:17.804 -07 000000610 INF: Z Motor: After move to -0.132168, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:17.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:17.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:17.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:17.804 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:17.804 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:17.804 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:17.804 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:17.804 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:17.804 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:17.804 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:17.804 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:17.804 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:17.804 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:17.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:17.814 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:17.814 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:17:17.814 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:17.824 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:17:17.824 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:17:17.824 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:17:17.824 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:17:17.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 29049 150\n [Camera]
17-03-18 05:17:18.024 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:18.464 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:18.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:18.464 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:18.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:18.464 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:18.464 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:18.464 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:17:18.464 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:18.594 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:18.594 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:17:18.654 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29049 820
17-03-18 05:17:18.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:18.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:17:18.854 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:17:18.854 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:18.854 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:18.854 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:17:18.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:17:18.964 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:17:18.964 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:18.974 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:18.974 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 05:17:19.014 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:19.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:19.014 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:19.014 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:19.014 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:17:19.014 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:19.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:19.024 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:19.024 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:19.024 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:17:19.204 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:19.204 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:19.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 29049 150' command took 2 ms to send, 1368 ms to get response, and 1378 ms overall
17-03-18 05:17:19.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:17:19.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132169599200542. ------
17-03-18 05:17:19.214 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:19.214 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13862 mm
17-03-18 05:17:19.214 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:19.214 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:19.214 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:17:19.214 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:17:19.224 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:19.224 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30282, sync = True, waitForSettling = False)
17-03-18 05:17:19.224 -07 000000625 INF: Z Motor: Moving to -0.138622 mm, started at -0.132170 mm, distance = -6.45 um
17-03-18 05:17:19.224 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:17:19.234 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:19.234 -07 000000455 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:17:19.244 -07 000000625 INF: FPGA: Xmit ZDACW 30282\n [Z Motor]
17-03-18 05:17:19.244 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:17:19.244 -07 000000502 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:19.244 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:19.244 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:17:19.244 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:17:19.254 -07 000000625 INF: FPGA: 'ZDACW 30282' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:17:19.254 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:19.264 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:19.264 -07 000000501 INF: FPGA: Recv ZDACR 30282
17-03-18 05:17:19.274 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:17:19.274 -07 000000625 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:17:19.404 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:17:19.404 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:17:19.404 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:19.404 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:17:19.404 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:17:19.404 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:19.404 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:19.404 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:17:19.404 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:19.414 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:17:19.424 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:17:19.424 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 05:17:19.624 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 05:17:19.624 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:17:19.674 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:19.684 -07 000000569 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:17:19.684 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:17:19.684 -07 000000502 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:19.684 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:17:19.684 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 05:17:20.634 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:20.634 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:17:20.644 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:20.644 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:20.674 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:20.674 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:17:20.674 -07 000000502 INF: Y Motor: Moved to 62.3950 after 1451 ms (table move)
17-03-18 05:17:20.674 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138622 mm (DAC = 30282)
17-03-18 05:17:20.674 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.674 -07 000000447 INF: FPGA: Recv ZSGSRD 30876
17-03-18 05:17:20.684 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:20.684 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.684 -07 000000581 INF: FPGA: Recv ZSGSRD 30867
17-03-18 05:17:20.694 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.694 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.694 -07 000000512 INF: FPGA: Recv ZSGSRD 30863
17-03-18 05:17:20.704 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.704 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.704 -07 000000626 INF: FPGA: Recv ZSGSRD 30862
17-03-18 05:17:20.714 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.714 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.714 -07 000000569 INF: FPGA: Recv ZSGSRD 30865
17-03-18 05:17:20.724 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.724 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.724 -07 000000424 INF: FPGA: Recv ZSGSRD 30868
17-03-18 05:17:20.734 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.734 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.734 -07 000000382 INF: FPGA: Recv ZSGSRD 30873
17-03-18 05:17:20.744 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.744 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.744 -07 000000467 INF: FPGA: Recv ZSGSRD 30877
17-03-18 05:17:20.754 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.754 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.754 -07 000000480 INF: FPGA: Recv ZSGSRD 30866
17-03-18 05:17:20.764 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.764 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:20.764 -07 000000502 INF: FPGA: Recv ZSGSRD 30867
17-03-18 05:17:20.774 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.774 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:20.774 -07 000000461 INF: FPGA: Recv ZPIEZORD 26678
17-03-18 05:17:20.784 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:20.784 -07 000000474 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.2 V.
17-03-18 05:17:20.784 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30868 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30867 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30862 (-137.8 uncal um), Max = 30877 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:17:20.784 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30868, posNoise = 9, negNoise = 6
17-03-18 05:17:20.784 -07 000000474 INF: Z Motor: After move to -0.138622, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:20.784 -07 000000474 INF: Z Motor: Settle wait time = 1454 ms, measure time = 106 ms (allowed 150 ms), total time = 1560 ms
17-03-18 05:17:20.784 -07 000000474 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:20.834 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:17:20.834 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:20.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:20.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:20.834 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:20.834 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:20.834 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:17:20.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:20.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:20.834 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:17:20.844 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:20.844 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:17:20.854 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:17:20.854 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:17:20.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:17:20.904 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:17:21.204 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:17:21.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:17:21.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:17:21.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:17:21.244 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:17:21.244 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:17:21.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:17:21.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:17:21.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:21.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:17:21.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:17:21.344 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:21.344 -07 000000512 INF: Autofocus start
17-03-18 05:17:21.344 -07 000000512 INF: MeasureProfile start
17-03-18 05:17:21.344 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:21.354 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:21.354 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:17:21.354 -07 000000512 INF: MeasureProfile done
17-03-18 05:17:21.354 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:17:21.354 -07 000000512 INF: Autofocus finished
17-03-18 05:17:21.554 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:17:21.554 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:17:21.554 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138625932403012. ----------
17-03-18 05:17:21.554 -07 000000610 INF: Cycle	135	Tile	4	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:21.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28777, sync = True, waitForSettling = True)
17-03-18 05:17:21.564 -07 000000610 INF: Z Motor: Moving to -0.131733 mm, started at -0.138626 mm, distance = 6.89 um
17-03-18 05:17:21.564 -07 000000610 INF: FPGA: Xmit ZDACW 28777\n [Z Motor]
17-03-18 05:17:21.564 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:17:21.574 -07 000000610 INF: FPGA: 'ZDACW 28777' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:21.574 -07 000000606 INF: FPGA: Recv ZDACR 28777
17-03-18 05:17:21.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:21.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.734 -07 000000626 INF: FPGA: Recv ZSGSRD 29796
17-03-18 05:17:21.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:21.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.754 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:21.754 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.981281,
17-03-18 05:17:21.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:21.754 -07 000000608 INF: FPGA: Recv ZSGSRD 29802
17-03-18 05:17:21.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:17:21.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.764 -07 000000626 INF: FPGA: Recv ZSGSRD 29789
17-03-18 05:17:21.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29793
17-03-18 05:17:21.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:17:21.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.824 -07 000000512 INF: FPGA: Recv ZSGSRD 29797
17-03-18 05:17:21.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:17:21.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.834 -07 000000479 INF: FPGA: Recv ZSGSRD 29798
17-03-18 05:17:21.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.844 -07 000000461 INF: FPGA: Recv ZSGSRD 29792
17-03-18 05:17:21.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.854 -07 000000608 INF: FPGA: Recv ZSGSRD 29797
17-03-18 05:17:21.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.864 -07 000000447 INF: FPGA: Recv ZSGSRD 29796
17-03-18 05:17:21.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:21.874 -07 000000581 INF: FPGA: Recv ZSGSRD 29790
17-03-18 05:17:21.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:21.884 -07 000000455 INF: FPGA: Recv ZPIEZORD 25237
17-03-18 05:17:21.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:21.894 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -10.0 V.
17-03-18 05:17:21.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29795 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29802 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:17:21.894 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29795, posNoise = 7, negNoise = 6
17-03-18 05:17:21.894 -07 000000610 INF: Z Motor: After move to -0.131733, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:21.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 05:17:21.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:21.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:21.894 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:21.894 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:21.894 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:21.894 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:21.894 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:21.894 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:21.894 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:21.894 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:21.894 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:21.894 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:21.904 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:17:21.904 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:21.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:21.904 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:21.914 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:17:21.914 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 05:17:21.914 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:17:21.914 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:17:21.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28954 150\n [Camera]
17-03-18 05:17:22.124 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:22.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:22.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:22.554 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:22.554 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:22.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:17:22.564 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:22.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:22.564 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:22.564 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:22.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:17:22.754 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28954 820
17-03-18 05:17:22.894 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:22.954 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:17:22.954 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:17:22.954 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:22.954 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:17:22.954 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:17:22.954 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:22.964 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:17:22.964 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:17:22.964 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:17:22.974 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:17:23.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:23.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:23.114 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:23.234 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:23.234 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:17:23.234 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:23.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:23.234 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:23.234 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:23.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:17:23.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:23.304 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:23.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28954 150' command took 2 ms to send, 1371 ms to get response, and 1381 ms overall
17-03-18 05:17:23.304 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132217
17-03-18 05:17:23.304 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13222 mm
17-03-18 05:17:23.304 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:23.304 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:17:23.304 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 28883, sync = True, waitForSettling = False)
17-03-18 05:17:23.304 -07 000000608 INF: Z Motor: Moving to -0.132218 mm, started at -0.131733 mm, distance = -0.49 um
17-03-18 05:17:23.304 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:17:23.304 -07 000000608 INF: FPGA: Xmit ZDACW 28883\n [Z Motor]
17-03-18 05:17:23.304 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:17:23.314 -07 000000608 INF: FPGA: 'ZDACW 28883' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:17:23.314 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:23.314 -07 000000512 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:17:23.324 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:17:23.324 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:23.324 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:23.324 -07 000000581 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:17:23.324 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:23.324 -07 000000382 INF: FPGA: Recv ZDACR 28883
17-03-18 05:17:23.334 -07 000000608 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:17:23.334 -07 000000608 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 05:17:23.334 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:23.614 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:17:23.624 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:17:23.624 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:23.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:17:23.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:17:23.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:23.624 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:23.624 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:17:23.624 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 05:17:23.634 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:17:23.704 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:17:23.704 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:17:23.764 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:23.764 -07 000000501 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:17:23.774 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:23.774 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:23.774 -07 000000581 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:17:23.774 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 05:17:24.724 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:24.724 -07 000000626 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:17:24.734 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:24.734 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:24.764 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:24.764 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:24.764 -07 000000581 INF: Y Motor: Moved to 63.2231 after 1455 ms (table move)
17-03-18 05:17:24.764 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132218 mm (DAC = 28883)
17-03-18 05:17:24.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.764 -07 000000474 INF: FPGA: Recv ZSGSRD 29881
17-03-18 05:17:24.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:24.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.774 -07 000000501 INF: FPGA: Recv ZSGSRD 29874
17-03-18 05:17:24.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.784 -07 000000626 INF: FPGA: Recv ZSGSRD 29871
17-03-18 05:17:24.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.794 -07 000000625 INF: FPGA: Recv ZSGSRD 29866
17-03-18 05:17:24.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.804 -07 000000581 INF: FPGA: Recv ZSGSRD 29867
17-03-18 05:17:24.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.814 -07 000000382 INF: FPGA: Recv ZSGSRD 29875
17-03-18 05:17:24.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.824 -07 000000479 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:17:24.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.834 -07 000000569 INF: FPGA: Recv ZSGSRD 29876
17-03-18 05:17:24.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.844 -07 000000608 INF: FPGA: Recv ZSGSRD 29878
17-03-18 05:17:24.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:24.854 -07 000000512 INF: FPGA: Recv ZSGSRD 29877
17-03-18 05:17:24.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:24.864 -07 000000447 INF: FPGA: Recv ZPIEZORD 25373
17-03-18 05:17:24.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.874 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.9 V.
17-03-18 05:17:24.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29873 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29874 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29866 (-131.4 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:17:24.874 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29873, posNoise = 8, negNoise = 7
17-03-18 05:17:24.874 -07 000000610 INF: Z Motor: After move to -0.132218, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:24.874 -07 000000610 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:17:24.874 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:24.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 05:17:24.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:24.924 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.13223384132196. ----------
17-03-18 05:17:24.924 -07 000000610 INF: Cycle	135	Tile	5	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:24.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28706, sync = True, waitForSettling = True)
17-03-18 05:17:24.924 -07 000000610 INF: Z Motor: Moving to -0.131408 mm, started at -0.132234 mm, distance = 0.83 um
17-03-18 05:17:24.924 -07 000000610 INF: FPGA: Xmit ZDACW 28706\n [Z Motor]
17-03-18 05:17:24.924 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:17:24.934 -07 000000610 INF: FPGA: 'ZDACW 28706' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:17:24.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:24.934 -07 000000626 INF: FPGA: Recv ZDACR 28706
17-03-18 05:17:24.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:24.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:25.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.094 -07 000000625 INF: FPGA: Recv ZSGSRD 29745
17-03-18 05:17:25.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:25.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.104 -07 000000502 INF: FPGA: Recv ZSGSRD 29745
17-03-18 05:17:25.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.114 -07 000000424 INF: FPGA: Recv ZSGSRD 29739
17-03-18 05:17:25.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.124 -07 000000579 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:17:25.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29747
17-03-18 05:17:25.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.144 -07 000000474 INF: FPGA: Recv ZSGSRD 29747
17-03-18 05:17:25.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.154 -07 000000501 INF: FPGA: Recv ZSGSRD 29748
17-03-18 05:17:25.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.164 -07 000000447 INF: FPGA: Recv ZSGSRD 29746
17-03-18 05:17:25.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.174 -07 000000455 INF: FPGA: Recv ZSGSRD 29747
17-03-18 05:17:25.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:25.184 -07 000000467 INF: FPGA: Recv ZSGSRD 29744
17-03-18 05:17:25.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:25.194 -07 000000480 INF: FPGA: Recv ZPIEZORD 25206
17-03-18 05:17:25.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:25.204 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -10.0 V.
17-03-18 05:17:25.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29745 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29746 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29739 (-130.6 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:17:25.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29745, posNoise = 3, negNoise = 6
17-03-18 05:17:25.204 -07 000000610 INF: Z Motor: After move to -0.131408, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:25.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:17:25.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:25.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:25.204 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:25.204 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:25.204 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:25.204 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:25.204 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:25.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:25.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:17:25.204 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:25.204 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:25.204 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:25.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:17:25.214 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:25.214 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:25.214 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:25.224 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:17:25.224 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:17:25.224 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:17:25.224 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:17:25.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28883 150\n [Camera]
17-03-18 05:17:25.424 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:25.854 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:25.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:25.854 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:25.854 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:25.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:17:25.864 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:25.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:25.864 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:25.864 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:25.864 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:17:26.054 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28883 820
17-03-18 05:17:26.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:26.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:17:26.234 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:17:26.234 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:26.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:17:26.234 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:17:26.234 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:26.244 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:26.244 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:26.244 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:17:26.254 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:17:26.414 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:26.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:26.414 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:26.414 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:26.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:17:26.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:26.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:26.414 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:26.414 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:26.414 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:17:26.604 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:26.604 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:26.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28883 150' command took 2 ms to send, 1372 ms to get response, and 1379 ms overall
17-03-18 05:17:26.604 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.131757
17-03-18 05:17:26.604 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13176 mm
17-03-18 05:17:26.604 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:26.604 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:17:26.604 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:17:26.604 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:26.604 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28782, sync = True, waitForSettling = False)
17-03-18 05:17:26.604 -07 000000618 INF: Z Motor: Moving to -0.131756 mm, started at -0.131412 mm, distance = -0.34 um
17-03-18 05:17:26.604 -07 000000608 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:17:26.614 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:17:26.614 -07 000000447 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:26.614 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:26.614 -07 000000447 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:17:26.614 -07 000000618 INF: FPGA: Xmit ZDACW 28782\n [Z Motor]
17-03-18 05:17:26.614 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:17:26.624 -07 000000618 INF: FPGA: 'ZDACW 28782' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:17:26.624 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:26.634 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:26.634 -07 000000625 INF: FPGA: Recv ZDACR 28782
17-03-18 05:17:26.644 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:17:26.644 -07 000000618 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:17:26.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:26.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:17:26.794 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:17:26.794 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:26.794 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:17:26.794 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:17:26.794 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:26.804 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:26.804 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:17:26.804 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:26.814 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:17:26.994 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:17:26.994 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:17:27.054 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:27.054 -07 000000455 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:17:27.064 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:27.064 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:27.064 -07 000000447 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 05:17:27.064 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.164 mm/sec
17-03-18 05:17:27.144 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.996267,
17-03-18 05:17:28.014 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:28.014 -07 000000608 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:17:28.024 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:28.024 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:28.044 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:28.044 -07 000000447 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:28.044 -07 000000447 INF: Y Motor: Moved to 64.0566 after 1441 ms (table move)
17-03-18 05:17:28.054 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131756 mm (DAC = 28782)
17-03-18 05:17:28.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.054 -07 000000474 INF: FPGA: Recv ZSGSRD 29805
17-03-18 05:17:28.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.064 -07 000000626 INF: FPGA: Recv ZSGSRD 29795
17-03-18 05:17:28.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.074 -07 000000569 INF: FPGA: Recv ZSGSRD 29794
17-03-18 05:17:28.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.084 -07 000000626 INF: FPGA: Recv ZSGSRD 29796
17-03-18 05:17:28.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29797
17-03-18 05:17:28.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29804
17-03-18 05:17:28.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.114 -07 000000579 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:17:28.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:17:28.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.134 -07 000000581 INF: FPGA: Recv ZSGSRD 29802
17-03-18 05:17:28.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.144 -07 000000447 INF: FPGA: Recv ZSGSRD 29800
17-03-18 05:17:28.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:28.154 -07 000000479 INF: FPGA: Recv ZPIEZORD 25321
17-03-18 05:17:28.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.164 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.8 V.
17-03-18 05:17:28.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29801 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29794 (-130.9 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:17:28.164 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 5, negNoise = 6
17-03-18 05:17:28.164 -07 000000610 INF: Z Motor: After move to -0.131756, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:28.164 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:17:28.164 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:28.204 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 05:17:28.204 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:28.204 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.131764873835612. ----------
17-03-18 05:17:28.204 -07 000000610 INF: Cycle	135	Tile	6	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:28.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28606, sync = True, waitForSettling = True)
17-03-18 05:17:28.204 -07 000000610 INF: Z Motor: Moving to -0.130950 mm, started at -0.131765 mm, distance = 0.81 um
17-03-18 05:17:28.204 -07 000000610 INF: FPGA: Xmit ZDACW 28606\n [Z Motor]
17-03-18 05:17:28.204 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:17:28.214 -07 000000610 INF: FPGA: 'ZDACW 28606' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:17:28.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:28.214 -07 000000424 INF: FPGA: Recv ZDACR 28606
17-03-18 05:17:28.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:28.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.374 -07 000000618 INF: FPGA: Recv ZSGSRD 29677
17-03-18 05:17:28.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:28.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.384 -07 000000447 INF: FPGA: Recv ZSGSRD 29670
17-03-18 05:17:28.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.394 -07 000000382 INF: FPGA: Recv ZSGSRD 29667
17-03-18 05:17:28.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.404 -07 000000581 INF: FPGA: Recv ZSGSRD 29677
17-03-18 05:17:28.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.414 -07 000000501 INF: FPGA: Recv ZSGSRD 29676
17-03-18 05:17:28.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.424 -07 000000626 INF: FPGA: Recv ZSGSRD 29675
17-03-18 05:17:28.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.434 -07 000000461 INF: FPGA: Recv ZSGSRD 29673
17-03-18 05:17:28.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.444 -07 000000569 INF: FPGA: Recv ZSGSRD 29676
17-03-18 05:17:28.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:17:28.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:28.464 -07 000000501 INF: FPGA: Recv ZSGSRD 29668
17-03-18 05:17:28.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:28.474 -07 000000606 INF: FPGA: Recv ZPIEZORD 25123
17-03-18 05:17:28.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:28.484 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -10.0 V.
17-03-18 05:17:28.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29667 (-130.1 uncal um), Max = 29679 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:17:28.484 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 5, negNoise = 7
17-03-18 05:17:28.484 -07 000000610 INF: Z Motor: After move to -0.130950, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:28.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 05:17:28.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:28.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:28.484 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:28.484 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:28.484 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:28.484 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:28.484 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:28.484 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:28.484 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:28.484 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:28.484 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:28.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:28.494 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:28.494 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:28.494 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:28.494 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:28.504 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:17:28.504 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:17:28.504 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:17:28.504 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:17:28.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28782 150\n [Camera]
17-03-18 05:17:28.714 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:29.144 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:29.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:29.144 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:29.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:29.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:29.144 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:29.144 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:29.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:17:29.154 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:29.154 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:17:29.334 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28782 820
17-03-18 05:17:29.484 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:29.524 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:17:29.524 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:17:29.524 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:29.524 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:29.524 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:17:29.524 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:17:29.524 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:29.534 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:29.534 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:17:29.534 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:17:29.704 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182
17-03-18 05:17:29.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182
17-03-18 05:17:29.704 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:29.704 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:29.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:17:29.704 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182
17-03-18 05:17:29.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182
17-03-18 05:17:29.704 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:29.704 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:29.704 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:17:29.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:29.884 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:29.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28782 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-18 05:17:29.894 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131412
17-03-18 05:17:29.894 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13141 mm
17-03-18 05:17:29.894 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:29.894 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:17:29.894 -07 000000455 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 05:17:29.894 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:29.894 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28707, sync = True, waitForSettling = False)
17-03-18 05:17:29.894 -07 000000501 INF: Z Motor: Moving to -0.131412 mm, started at -0.130955 mm, distance = -0.46 um
17-03-18 05:17:29.894 -07 000000581 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:17:29.904 -07 000000501 INF: FPGA: Xmit ZDACW 28707\n [Z Motor]
17-03-18 05:17:29.904 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:29.904 -07 000000455 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:29.904 -07 000000455 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:29.904 -07 000000455 INF: Y Motor: Moving 1338 steps-12
17-03-18 05:17:29.904 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:17:29.914 -07 000000501 INF: FPGA: 'ZDACW 28707' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:17:29.914 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:29.914 -07 000000569 INF: FPGA: Recv ZDACR 28707
17-03-18 05:17:29.924 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:29.924 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:29.924 -07 000000501 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 05:17:30.084 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:17:30.084 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:17:30.084 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:30.084 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:17:30.084 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:17:30.084 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:30.084 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:30.084 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:17:30.084 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:30.094 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:17:30.294 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:17:30.294 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:17:30.384 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:30.384 -07 000000479 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:17:30.394 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:30.394 -07 000000455 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:30.394 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:17:30.394 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-18 05:17:31.344 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:31.344 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:17:31.354 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:31.354 -07 000000455 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:31.384 -07 000000455 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:31.384 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:31.384 -07 000000455 INF: Y Motor: Moved to 64.8784 after 1487 ms (table move)
17-03-18 05:17:31.384 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131412 mm (DAC = 28707)
17-03-18 05:17:31.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.384 -07 000000608 INF: FPGA: Recv ZSGSRD 29742
17-03-18 05:17:31.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:31.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.394 -07 000000626 INF: FPGA: Recv ZSGSRD 29740
17-03-18 05:17:31.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.404 -07 000000424 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:17:31.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.414 -07 000000502 INF: FPGA: Recv ZSGSRD 29739
17-03-18 05:17:31.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.424 -07 000000618 INF: FPGA: Recv ZSGSRD 29745
17-03-18 05:17:31.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.434 -07 000000424 INF: FPGA: Recv ZSGSRD 29749
17-03-18 05:17:31.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.444 -07 000000608 INF: FPGA: Recv ZSGSRD 29746
17-03-18 05:17:31.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.454 -07 000000626 INF: FPGA: Recv ZSGSRD 29749
17-03-18 05:17:31.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.464 -07 000000474 INF: FPGA: Recv ZSGSRD 29744
17-03-18 05:17:31.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.474 -07 000000479 INF: FPGA: Recv ZSGSRD 29747
17-03-18 05:17:31.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:31.484 -07 000000569 INF: FPGA: Recv ZPIEZORD 25257
17-03-18 05:17:31.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.494 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -9.8 V.
17-03-18 05:17:31.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29744 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29744 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29739 (-130.6 uncal um), Max = 29749 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:31.494 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29744, posNoise = 5, negNoise = 5
17-03-18 05:17:31.494 -07 000000610 INF: Z Motor: After move to -0.131412, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:31.494 -07 000000610 INF: Z Motor: Settle wait time = 1489 ms, measure time = 106 ms (allowed 150 ms), total time = 1595 ms
17-03-18 05:17:31.494 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:31.544 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1648 ms
17-03-18 05:17:31.544 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:31.544 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.131405117955673. ----------
17-03-18 05:17:31.544 -07 000000610 INF: Cycle	135	Tile	7	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:31.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28530, sync = True, waitForSettling = True)
17-03-18 05:17:31.544 -07 000000610 INF: Z Motor: Moving to -0.130602 mm, started at -0.131405 mm, distance = 0.80 um
17-03-18 05:17:31.544 -07 000000610 INF: FPGA: Xmit ZDACW 28530\n [Z Motor]
17-03-18 05:17:31.544 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:17:31.554 -07 000000610 INF: FPGA: 'ZDACW 28530' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:31.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:31.554 -07 000000467 INF: FPGA: Recv ZDACR 28530
17-03-18 05:17:31.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:31.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.714 -07 000000474 INF: FPGA: Recv ZSGSRD 29624
17-03-18 05:17:31.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.724 -07 000000501 INF: FPGA: Recv ZSGSRD 29627
17-03-18 05:17:31.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.734 -07 000000569 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:17:31.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.744 -07 000000581 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:17:31.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.754 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:31.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:31.754 -07 000000569 INF: FPGA: Recv ZSGSRD 29628
17-03-18 05:17:31.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.764 -07 000000581 INF: FPGA: Recv ZSGSRD 29620
17-03-18 05:17:31.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.774 -07 000000461 INF: FPGA: Recv ZSGSRD 29624
17-03-18 05:17:31.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:31.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.784 -07 000000625 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:17:31.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.794 -07 000000606 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:17:31.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:31.804 -07 000000579 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:17:31.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:31.814 -07 000000467 INF: FPGA: Recv ZPIEZORD 25074
17-03-18 05:17:31.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:31.824 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -10.0 V.
17-03-18 05:17:31.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29620 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29614 (-129.8 uncal um), Max = 29628 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:17:31.824 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 7, negNoise = 7
17-03-18 05:17:31.824 -07 000000610 INF: Z Motor: After move to -0.130602, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:31.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:31.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:31.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:31.824 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:31.824 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:31.824 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:31.824 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:31.824 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:31.824 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:31.824 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:31.824 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:31.824 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:31.824 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:31.824 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:31.824 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:31.834 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:31.834 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:31.844 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:17:31.844 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:31.844 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:17:31.844 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:31.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28707 150\n [Camera]
17-03-18 05:17:32.044 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:32.484 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:32.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:32.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:32.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:32.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:17:32.484 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:32.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:32.484 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:32.484 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:32.484 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:17:32.504 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 3.986717,
17-03-18 05:17:32.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28707 820
17-03-18 05:17:32.834 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:32.864 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:17:32.864 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:17:32.864 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:32.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:17:32.864 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:17:32.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:32.864 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:32.864 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:32.864 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:17:32.874 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:17:33.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:33.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:33.034 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:33.034 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:33.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:17:33.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:33.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:33.044 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:33.044 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:33.044 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:17:33.234 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1375
17-03-18 05:17:33.234 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:33.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28707 150' command took 2 ms to send, 1372 ms to get response, and 1382 ms overall
17-03-18 05:17:33.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:17:33.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130614939862236. ------
17-03-18 05:17:33.234 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:33.234 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13726 mm
17-03-18 05:17:33.234 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:33.244 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:17:33.244 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29985, sync = True, waitForSettling = False)
17-03-18 05:17:33.244 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 05:17:33.244 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:33.244 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:33.244 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:17:33.244 -07 000000502 INF: Z Motor: Moving to -0.137263 mm, started at -0.130615 mm, distance = -6.65 um
17-03-18 05:17:33.244 -07 000000461 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:17:33.254 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:33.254 -07 000000502 INF: FPGA: Xmit ZDACW 29985\n [Z Motor]
17-03-18 05:17:33.254 -07 000000579 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:33.254 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:33.254 -07 000000579 INF: Y Motor: Moving 1351 steps-29
17-03-18 05:17:33.254 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:17:33.264 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:17:33.264 -07 000000502 INF: FPGA: 'ZDACW 29985' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:17:33.274 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:33.284 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:33.284 -07 000000382 INF: FPGA: Recv ZDACR 29985
17-03-18 05:17:33.294 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:17:33.294 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:17:33.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:17:33.424 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:17:33.424 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:33.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:17:33.424 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:17:33.424 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:33.424 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:33.424 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:17:33.434 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:33.434 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:17:33.464 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:17:33.464 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:17:33.644 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:17:33.644 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:17:33.704 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:33.704 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:17:33.714 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:17:33.714 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:33.714 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:17:33.714 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:17:34.664 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:34.664 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:17:34.674 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.674 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:34.704 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:34.704 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:34.704 -07 000000579 INF: Y Motor: Moved to 65.7134 after 1469 ms (table move)
17-03-18 05:17:34.714 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137263 mm (DAC = 29985)
17-03-18 05:17:34.714 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.714 -07 000000608 INF: FPGA: Recv ZSGSRD 30654
17-03-18 05:17:34.724 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:17:34.724 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.724 -07 000000502 INF: FPGA: Recv ZSGSRD 30645
17-03-18 05:17:34.734 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.734 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.734 -07 000000461 INF: FPGA: Recv ZSGSRD 30651
17-03-18 05:17:34.744 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.744 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.744 -07 000000569 INF: FPGA: Recv ZSGSRD 30658
17-03-18 05:17:34.754 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.754 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.754 -07 000000479 INF: FPGA: Recv ZSGSRD 30654
17-03-18 05:17:34.764 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.764 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.764 -07 000000581 INF: FPGA: Recv ZSGSRD 30660
17-03-18 05:17:34.774 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.774 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.774 -07 000000502 INF: FPGA: Recv ZSGSRD 30659
17-03-18 05:17:34.784 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.784 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.784 -07 000000461 INF: FPGA: Recv ZSGSRD 30664
17-03-18 05:17:34.794 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.794 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.794 -07 000000569 INF: FPGA: Recv ZSGSRD 30653
17-03-18 05:17:34.804 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.804 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:34.804 -07 000000501 INF: FPGA: Recv ZSGSRD 30647
17-03-18 05:17:34.814 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.814 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:34.814 -07 000000480 INF: FPGA: Recv ZPIEZORD 26439
17-03-18 05:17:34.824 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:34.824 -07 000000447 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.575 V. Piezo Error = -9.3 V.
17-03-18 05:17:34.824 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30654 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30654 (-136.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30645 (-136.4 uncal um), Max = 30664 (-136.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:17:34.824 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30654, posNoise = 10, negNoise = 9
17-03-18 05:17:34.824 -07 000000447 INF: Z Motor: After move to -0.137263, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:34.824 -07 000000447 INF: Z Motor: Settle wait time = 1471 ms, measure time = 108 ms (allowed 150 ms), total time = 1579 ms
17-03-18 05:17:34.824 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:34.874 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 05:17:34.874 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:34.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:34.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:34.874 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:34.874 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:34.874 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:17:34.874 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:34.884 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:34.884 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:17:34.884 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:17:34.884 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:17:34.894 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:17:34.894 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:17:34.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:17:34.944 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:17:35.244 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:17:35.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:17:35.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:17:35.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:17:35.284 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:17:35.284 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 05:17:35.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:17:35.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:17:35.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:35.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:17:35.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:17:35.384 -07 000000461 INF: Autofocus start
17-03-18 05:17:35.384 -07 000000461 INF: MeasureProfile start
17-03-18 05:17:35.384 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:35.384 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:35.394 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:35.394 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:17:35.394 -07 000000461 INF: MeasureProfile done
17-03-18 05:17:35.394 -07 000000461 INF: X=80  Z correction [um]=0.3608828
17-03-18 05:17:35.394 -07 000000461 INF: Autofocus finished
17-03-18 05:17:35.594 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:17:35.594 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:17:35.594 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137251151004675. ----------
17-03-18 05:17:35.594 -07 000000610 INF: Cycle	135	Tile	8	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:35.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28577, sync = True, waitForSettling = True)
17-03-18 05:17:35.604 -07 000000610 INF: Z Motor: Moving to -0.130817 mm, started at -0.137251 mm, distance = 6.43 um
17-03-18 05:17:35.604 -07 000000610 INF: FPGA: Xmit ZDACW 28577\n [Z Motor]
17-03-18 05:17:35.604 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:17:35.614 -07 000000610 INF: FPGA: 'ZDACW 28577' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:35.614 -07 000000618 INF: FPGA: Recv ZDACR 28577
17-03-18 05:17:35.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:35.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.774 -07 000000581 INF: FPGA: Recv ZSGSRD 29654
17-03-18 05:17:35.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.784 -07 000000474 INF: FPGA: Recv ZSGSRD 29652
17-03-18 05:17:35.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.794 -07 000000625 INF: FPGA: Recv ZSGSRD 29657
17-03-18 05:17:35.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.804 -07 000000474 INF: FPGA: Recv ZSGSRD 29658
17-03-18 05:17:35.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:35.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.814 -07 000000461 INF: FPGA: Recv ZSGSRD 29661
17-03-18 05:17:35.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.824 -07 000000501 INF: FPGA: Recv ZSGSRD 29647
17-03-18 05:17:35.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29643
17-03-18 05:17:35.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.844 -07 000000480 INF: FPGA: Recv ZSGSRD 29656
17-03-18 05:17:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.854 -07 000000581 INF: FPGA: Recv ZSGSRD 29653
17-03-18 05:17:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:35.864 -07 000000618 INF: FPGA: Recv ZSGSRD 29651
17-03-18 05:17:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:35.874 -07 000000447 INF: FPGA: Recv ZPIEZORD 25121
17-03-18 05:17:35.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:35.884 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.9 V.
17-03-18 05:17:35.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29653 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29654 (-130.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29643 (-130.0 uncal um), Max = 29661 (-130.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:17:35.884 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29653, posNoise = 8, negNoise = 10
17-03-18 05:17:35.884 -07 000000610 INF: Z Motor: After move to -0.130817, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:35.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:17:35.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:35.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:35.884 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:35.884 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:35.884 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:35.884 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:35.884 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:35.884 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:35.894 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:35.894 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:35.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:35.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:35.894 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:17:35.894 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:35.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:17:35.894 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:35.914 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:17:35.914 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:17:35.914 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:17:35.914 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:17:35.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28754 150\n [Camera]
17-03-18 05:17:36.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:36.554 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:36.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:36.554 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:36.554 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:36.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:17:36.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:36.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:36.554 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:36.554 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:36.554 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:17:36.744 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28754 820
17-03-18 05:17:36.754 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:36.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:36.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:36.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:17:36.924 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:17:36.924 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:36.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:17:36.934 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:17:36.934 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:36.934 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:36.934 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:36.934 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:17:36.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:17:37.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:37.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:37.104 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:37.104 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:37.104 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:17:37.104 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:37.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:37.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:37.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:37.374 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:17:37.374 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:37.374 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:37.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28754 150' command took 2 ms to send, 1446 ms to get response, and 1459 ms overall
17-03-18 05:17:37.374 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131230
17-03-18 05:17:37.374 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13123 mm
17-03-18 05:17:37.374 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:37.384 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 28667, sync = True, waitForSettling = False)
17-03-18 05:17:37.384 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:17:37.384 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:17:37.384 -07 000000608 INF: Z Motor: Moving to -0.131229 mm, started at -0.130821 mm, distance = -0.41 um
17-03-18 05:17:37.394 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:37.394 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:17:37.404 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:17:37.404 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:37.404 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:37.404 -07 000000480 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:17:37.404 -07 000000608 INF: FPGA: Xmit ZDACW 28667\n [Z Motor]
17-03-18 05:17:37.404 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:17:37.414 -07 000000608 INF: FPGA: 'ZDACW 28667' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:17:37.424 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:37.434 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:37.434 -07 000000467 INF: FPGA: Recv ZDACR 28667
17-03-18 05:17:37.444 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:17:37.444 -07 000000608 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 05:17:37.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:17:37.504 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:17:37.504 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:37.504 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:37.504 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:17:37.774 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:17:37.774 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 662 ms.
17-03-18 05:17:37.774 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:37.774 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:17:37.774 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 671 ms.
17-03-18 05:17:37.804 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:17:37.804 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 05:17:37.844 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:37.854 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:17:37.854 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:17:37.854 -07 000000480 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:37.854 -07 000000480 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:17:37.854 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-18 05:17:37.864 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.030322,
17-03-18 05:17:38.804 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:38.804 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:17:38.814 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:38.814 -07 000000480 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:38.844 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:38.844 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:38.844 -07 000000480 INF: Y Motor: Moved to 66.5386 after 1459 ms (table move)
17-03-18 05:17:38.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131229 mm (DAC = 28667)
17-03-18 05:17:38.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.844 -07 000000501 INF: FPGA: Recv ZSGSRD 29720
17-03-18 05:17:38.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:38.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.854 -07 000000569 INF: FPGA: Recv ZSGSRD 29721
17-03-18 05:17:38.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.864 -07 000000606 INF: FPGA: Recv ZSGSRD 29727
17-03-18 05:17:38.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.874 -07 000000579 INF: FPGA: Recv ZSGSRD 29716
17-03-18 05:17:38.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.884 -07 000000581 INF: FPGA: Recv ZSGSRD 29714
17-03-18 05:17:38.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29715
17-03-18 05:17:38.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.904 -07 000000626 INF: FPGA: Recv ZSGSRD 29715
17-03-18 05:17:38.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29718
17-03-18 05:17:38.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29718
17-03-18 05:17:38.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:38.934 -07 000000608 INF: FPGA: Recv ZSGSRD 29722
17-03-18 05:17:38.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:38.944 -07 000000501 INF: FPGA: Recv ZPIEZORD 25212
17-03-18 05:17:38.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:38.954 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.9 V.
17-03-18 05:17:38.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29714 (-130.4 uncal um), Max = 29727 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:38.954 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 8, negNoise = 5
17-03-18 05:17:38.954 -07 000000610 INF: Z Motor: After move to -0.131229, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:38.954 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:17:38.954 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:39.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:17:39.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:39.004 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.131244512652129. ----------
17-03-18 05:17:39.004 -07 000000610 INF: Cycle	135	Tile	9	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:39.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28490, sync = True, waitForSettling = True)
17-03-18 05:17:39.004 -07 000000610 INF: Z Motor: Moving to -0.130419 mm, started at -0.131245 mm, distance = 0.83 um
17-03-18 05:17:39.004 -07 000000610 INF: FPGA: Xmit ZDACW 28490\n [Z Motor]
17-03-18 05:17:39.004 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:17:39.014 -07 000000610 INF: FPGA: 'ZDACW 28490' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:39.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:39.014 -07 000000606 INF: FPGA: Recv ZDACR 28490
17-03-18 05:17:39.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:39.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.174 -07 000000625 INF: FPGA: Recv ZSGSRD 29596
17-03-18 05:17:39.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:39.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29597
17-03-18 05:17:39.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.194 -07 000000461 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:17:39.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29588
17-03-18 05:17:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.214 -07 000000625 INF: FPGA: Recv ZSGSRD 29587
17-03-18 05:17:39.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.224 -07 000000606 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:17:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29591
17-03-18 05:17:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.244 -07 000000618 INF: FPGA: Recv ZSGSRD 29586
17-03-18 05:17:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.254 -07 000000502 INF: FPGA: Recv ZSGSRD 29589
17-03-18 05:17:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:39.264 -07 000000480 INF: FPGA: Recv ZSGSRD 29592
17-03-18 05:17:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:39.274 -07 000000608 INF: FPGA: Recv ZPIEZORD 25052
17-03-18 05:17:39.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:39.284 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -10.0 V.
17-03-18 05:17:39.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29591 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29592 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29586 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:39.284 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29591, posNoise = 6, negNoise = 5
17-03-18 05:17:39.284 -07 000000610 INF: Z Motor: After move to -0.130419, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:39.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:39.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:39.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:39.284 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:39.284 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:39.284 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:39.284 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:39.284 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:39.284 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:39.284 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:39.284 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:39.284 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:39.284 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:39.294 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:39.294 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:39.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:17:39.294 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:39.304 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:17:39.304 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:17:39.304 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:17:39.304 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:17:39.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28667 150\n [Camera]
17-03-18 05:17:39.504 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:17:39.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:39.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:39.944 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:39.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:39.944 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:39.944 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:39.944 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:17:39.944 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:39.944 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:39.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:17:40.134 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28667 820
17-03-18 05:17:40.274 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:40.314 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:17:40.314 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:17:40.314 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:40.324 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:40.324 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:17:40.324 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:17:40.324 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:40.324 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:40.324 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:17:40.324 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:17:40.484 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:40.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:40.494 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:40.494 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:40.494 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:17:40.494 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:40.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:40.494 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:40.494 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:40.494 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:17:40.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:40.684 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:40.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28667 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-18 05:17:40.684 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131162
17-03-18 05:17:40.684 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13116 mm
17-03-18 05:17:40.684 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:40.684 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:17:40.684 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:17:40.684 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:40.684 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 28652, sync = True, waitForSettling = False)
17-03-18 05:17:40.684 -07 000000579 INF: Z Motor: Moving to -0.131160 mm, started at -0.130422 mm, distance = -0.74 um
17-03-18 05:17:40.694 -07 000000626 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:17:40.694 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:40.694 -07 000000480 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:40.694 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:40.694 -07 000000480 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:17:40.694 -07 000000579 INF: FPGA: Xmit ZDACW 28652\n [Z Motor]
17-03-18 05:17:40.694 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:17:40.704 -07 000000579 INF: FPGA: 'ZDACW 28652' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:17:40.704 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:40.704 -07 000000606 INF: FPGA: Recv ZDACR 28652
17-03-18 05:17:40.714 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:40.714 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:40.714 -07 000000579 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 05:17:40.874 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:17:40.874 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:17:40.874 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:40.874 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:17:40.874 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:17:40.874 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:40.874 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:40.874 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:17:40.874 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:40.884 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:17:41.084 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:17:41.084 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:17:41.144 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:41.144 -07 000000455 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:17:41.154 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:41.154 -07 000000480 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:41.154 -07 000000480 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:17:41.154 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:17:41.754 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:42.104 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:42.104 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:17:42.114 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:42.114 -07 000000480 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:42.144 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:42.144 -07 000000480 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:42.144 -07 000000480 INF: Y Motor: Moved to 67.3716 after 1456 ms (table move)
17-03-18 05:17:42.144 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131160 mm (DAC = 28652)
17-03-18 05:17:42.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.144 -07 000000625 INF: FPGA: Recv ZSGSRD 29712
17-03-18 05:17:42.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:42.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.154 -07 000000447 INF: FPGA: Recv ZSGSRD 29706
17-03-18 05:17:42.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.164 -07 000000606 INF: FPGA: Recv ZSGSRD 29700
17-03-18 05:17:42.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.174 -07 000000626 INF: FPGA: Recv ZSGSRD 29702
17-03-18 05:17:42.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.184 -07 000000512 INF: FPGA: Recv ZSGSRD 29709
17-03-18 05:17:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.194 -07 000000579 INF: FPGA: Recv ZSGSRD 29701
17-03-18 05:17:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.204 -07 000000461 INF: FPGA: Recv ZSGSRD 29711
17-03-18 05:17:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.214 -07 000000608 INF: FPGA: Recv ZSGSRD 29713
17-03-18 05:17:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.224 -07 000000618 INF: FPGA: Recv ZSGSRD 29709
17-03-18 05:17:42.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.234 -07 000000382 INF: FPGA: Recv ZSGSRD 29711
17-03-18 05:17:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:42.244 -07 000000480 INF: FPGA: Recv ZPIEZORD 25199
17-03-18 05:17:42.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.254 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.9 V.
17-03-18 05:17:42.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29707 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29709 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29700 (-130.3 uncal um), Max = 29713 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:17:42.254 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29707, posNoise = 6, negNoise = 7
17-03-18 05:17:42.254 -07 000000610 INF: Z Motor: After move to -0.131160, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:42.254 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 05:17:42.254 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:42.304 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 05:17:42.304 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:42.304 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.131167422106428. ----------
17-03-18 05:17:42.304 -07 000000610 INF: Cycle	135	Tile	10	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:42.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28476, sync = True, waitForSettling = True)
17-03-18 05:17:42.304 -07 000000610 INF: Z Motor: Moving to -0.130355 mm, started at -0.131167 mm, distance = 0.81 um
17-03-18 05:17:42.304 -07 000000610 INF: FPGA: Xmit ZDACW 28476\n [Z Motor]
17-03-18 05:17:42.304 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:17:42.314 -07 000000610 INF: FPGA: 'ZDACW 28476' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:42.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:42.314 -07 000000579 INF: FPGA: Recv ZDACR 28476
17-03-18 05:17:42.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:42.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.474 -07 000000480 INF: FPGA: Recv ZSGSRD 29583
17-03-18 05:17:42.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:42.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.484 -07 000000455 INF: FPGA: Recv ZSGSRD 29581
17-03-18 05:17:42.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.494 -07 000000579 INF: FPGA: Recv ZSGSRD 29575
17-03-18 05:17:42.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.504 -07 000000618 INF: FPGA: Recv ZSGSRD 29580
17-03-18 05:17:42.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.514 -07 000000501 INF: FPGA: Recv ZSGSRD 29581
17-03-18 05:17:42.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.524 -07 000000474 INF: FPGA: Recv ZSGSRD 29583
17-03-18 05:17:42.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.534 -07 000000447 INF: FPGA: Recv ZSGSRD 29583
17-03-18 05:17:42.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.544 -07 000000382 INF: FPGA: Recv ZSGSRD 29585
17-03-18 05:17:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:42.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.554 -07 000000606 INF: FPGA: Recv ZSGSRD 29582
17-03-18 05:17:42.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:42.564 -07 000000626 INF: FPGA: Recv ZSGSRD 29578
17-03-18 05:17:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:42.574 -07 000000467 INF: FPGA: Recv ZPIEZORD 25043
17-03-18 05:17:42.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:42.584 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -10.0 V.
17-03-18 05:17:42.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29581 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29575 (-129.5 uncal um), Max = 29585 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:17:42.584 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29581, posNoise = 4, negNoise = 6
17-03-18 05:17:42.584 -07 000000610 INF: Z Motor: After move to -0.130355, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:42.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:42.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:42.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:42.584 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:42.584 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:42.584 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:42.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:42.584 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:42.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:42.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:42.584 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:42.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:42.584 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:42.584 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:42.594 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:42.594 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:42.594 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:42.604 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:17:42.604 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:17:42.604 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:17:42.604 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:42.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28652 150\n [Camera]
17-03-18 05:17:42.814 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:43.224 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.004458,
17-03-18 05:17:43.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:43.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:43.244 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:43.244 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:43.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:17:43.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:43.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:43.244 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:43.364 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:43.364 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:17:43.434 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28652 820
17-03-18 05:17:43.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:43.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:17:43.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:17:43.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:43.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:43.634 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:17:43.744 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:17:43.744 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:17:43.744 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:43.744 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:17:43.754 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 05:17:43.794 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:43.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:43.794 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:43.794 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:43.794 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:17:43.804 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:43.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:43.804 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:43.804 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:43.804 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:17:43.984 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:43.984 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:43.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28652 150' command took 2 ms to send, 1369 ms to get response, and 1379 ms overall
17-03-18 05:17:43.994 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130827
17-03-18 05:17:43.994 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13083 mm
17-03-18 05:17:43.994 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:43.994 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 28579, sync = True, waitForSettling = False)
17-03-18 05:17:43.994 -07 000000479 INF: Z Motor: Moving to -0.130826 mm, started at -0.130358 mm, distance = -0.47 um
17-03-18 05:17:43.994 -07 000000479 INF: FPGA: Xmit ZDACW 28579\n [Z Motor]
17-03-18 05:17:43.994 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:17:43.994 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 05:17:43.994 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:17:44.004 -07 000000479 INF: FPGA: 'ZDACW 28579' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:44.004 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:44.004 -07 000000626 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:17:44.014 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:17:44.014 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:44.014 -07 000000502 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:44.014 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:44.014 -07 000000502 INF: Y Motor: Moving 1346 steps-23
17-03-18 05:17:44.014 -07 000000606 INF: FPGA: Recv ZDACR 28579
17-03-18 05:17:44.024 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:17:44.024 -07 000000479 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 05:17:44.024 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:44.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:17:44.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:17:44.174 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:44.184 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:17:44.184 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:17:44.184 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:44.184 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:44.184 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:17:44.184 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:44.194 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:17:44.404 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:17:44.404 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-18 05:17:44.454 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:44.454 -07 000000579 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:17:44.464 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:44.464 -07 000000502 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:44.464 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:17:44.464 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.841 mm, average velocity = 2.145 mm/sec
17-03-18 05:17:45.414 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:45.414 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:17:45.424 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:45.424 -07 000000502 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:45.454 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:45.454 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:17:45.454 -07 000000502 INF: Y Motor: Moved to 68.2046 after 1454 ms (table move)
17-03-18 05:17:45.454 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130826 mm (DAC = 28579)
17-03-18 05:17:45.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.454 -07 000000618 INF: FPGA: Recv ZSGSRD 29654
17-03-18 05:17:45.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:45.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.464 -07 000000424 INF: FPGA: Recv ZSGSRD 29655
17-03-18 05:17:45.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.474 -07 000000461 INF: FPGA: Recv ZSGSRD 29646
17-03-18 05:17:45.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.484 -07 000000606 INF: FPGA: Recv ZSGSRD 29653
17-03-18 05:17:45.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29659
17-03-18 05:17:45.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.504 -07 000000447 INF: FPGA: Recv ZSGSRD 29657
17-03-18 05:17:45.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.514 -07 000000424 INF: FPGA: Recv ZSGSRD 29660
17-03-18 05:17:45.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.524 -07 000000626 INF: FPGA: Recv ZSGSRD 29655
17-03-18 05:17:45.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:45.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.534 -07 000000618 INF: FPGA: Recv ZSGSRD 29664
17-03-18 05:17:45.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.544 -07 000000382 INF: FPGA: Recv ZSGSRD 29656
17-03-18 05:17:45.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:45.554 -07 000000569 INF: FPGA: Recv ZPIEZORD 25154
17-03-18 05:17:45.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.564 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.9 V.
17-03-18 05:17:45.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29656 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29656 (-130.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29646 (-130.0 uncal um), Max = 29664 (-130.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:17:45.564 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29656, posNoise = 8, negNoise = 10
17-03-18 05:17:45.564 -07 000000610 INF: Z Motor: After move to -0.130826, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:45.564 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:17:45.564 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:45.614 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 05:17:45.614 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:45.614 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.130839787287198. ----------
17-03-18 05:17:45.614 -07 000000610 INF: Cycle	135	Tile	11	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:45.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28402, sync = True, waitForSettling = True)
17-03-18 05:17:45.614 -07 000000610 INF: Z Motor: Moving to -0.130016 mm, started at -0.130840 mm, distance = 0.82 um
17-03-18 05:17:45.614 -07 000000610 INF: FPGA: Xmit ZDACW 28402\n [Z Motor]
17-03-18 05:17:45.614 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:17:45.624 -07 000000610 INF: FPGA: 'ZDACW 28402' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:45.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:45.624 -07 000000512 INF: FPGA: Recv ZDACR 28402
17-03-18 05:17:45.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:45.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.784 -07 000000581 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:17:45.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:45.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.794 -07 000000626 INF: FPGA: Recv ZSGSRD 29526
17-03-18 05:17:45.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.804 -07 000000474 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:17:45.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.814 -07 000000606 INF: FPGA: Recv ZSGSRD 29533
17-03-18 05:17:45.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.824 -07 000000502 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:17:45.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.834 -07 000000467 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:17:45.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.844 -07 000000501 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:17:45.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.854 -07 000000447 INF: FPGA: Recv ZSGSRD 29529
17-03-18 05:17:45.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.864 -07 000000382 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:17:45.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:45.874 -07 000000512 INF: FPGA: Recv ZSGSRD 29525
17-03-18 05:17:45.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:45.884 -07 000000581 INF: FPGA: Recv ZPIEZORD 24985
17-03-18 05:17:45.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:45.894 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.0 V.
17-03-18 05:17:45.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29528 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29528 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29525 (-129.2 uncal um), Max = 29533 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:17:45.894 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29528, posNoise = 5, negNoise = 3
17-03-18 05:17:45.894 -07 000000610 INF: Z Motor: After move to -0.130016, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:45.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:17:45.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:45.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:45.894 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:45.894 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:45.894 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:45.894 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:45.894 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:45.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:45.894 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:45.894 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:45.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:45.894 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:45.904 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:45.904 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:45.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:17:45.904 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:45.924 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 05:17:45.924 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:17:45.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 05:17:45.924 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:17:45.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28579 150\n [Camera]
17-03-18 05:17:46.124 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:46.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:46.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:46.554 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:46.564 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:46.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:17:46.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:46.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:46.564 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:46.564 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:46.564 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:17:46.754 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28579 820
17-03-18 05:17:46.754 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:46.904 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:46.934 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:17:46.934 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:17:46.934 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:46.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:17:46.934 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:17:46.934 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:46.944 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:46.944 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:46.944 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:17:46.944 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:17:47.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:47.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:47.114 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:47.114 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:47.114 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:17:47.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:47.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:47.114 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:47.234 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:47.234 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:17:47.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1374
17-03-18 05:17:47.304 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:47.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28579 150' command took 2 ms to send, 1374 ms to get response, and 1381 ms overall
17-03-18 05:17:47.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:17:47.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130017488133053. ------
17-03-18 05:17:47.314 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:47.314 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13663 mm
17-03-18 05:17:47.314 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:47.314 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:47.314 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:17:47.314 -07 000000606 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:17:47.314 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29846, sync = True, waitForSettling = False)
17-03-18 05:17:47.314 -07 000000447 INF: Z Motor: Moving to -0.136626 mm, started at -0.130017 mm, distance = -6.61 um
17-03-18 05:17:47.324 -07 000000447 INF: FPGA: Xmit ZDACW 29846\n [Z Motor]
17-03-18 05:17:47.324 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:47.324 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:17:47.334 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:47.334 -07 000000447 INF: FPGA: 'ZDACW 29846' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:17:47.334 -07 000000479 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:17:47.344 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:17:47.344 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:17:47.344 -07 000000606 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:47.344 -07 000000606 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:47.344 -07 000000606 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:17:47.354 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:47.354 -07 000000479 INF: FPGA: Recv ZDACR 29846
17-03-18 05:17:47.364 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:47.364 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:17:47.364 -07 000000447 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:17:47.494 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:17:47.494 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:17:47.494 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:47.504 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:17:47.504 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:17:47.544 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:17:47.544 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:17:47.614 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:17:47.614 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:17:47.614 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:47.624 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:47.624 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-18 05:17:47.744 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:17:47.744 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 05:17:47.794 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:47.794 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:17:47.804 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:47.804 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:47.804 -07 000000606 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:17:47.804 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.095 mm/sec
17-03-18 05:17:48.694 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.004458,
17-03-18 05:17:48.754 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:48.754 -07 000000474 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:17:48.764 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:48.764 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:48.794 -07 000000606 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:48.794 -07 000000606 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:48.794 -07 000000606 INF: Y Motor: Moved to 69.0264 after 1477 ms (table move)
17-03-18 05:17:48.794 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136626 mm (DAC = 29846)
17-03-18 05:17:48.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.794 -07 000000618 INF: FPGA: Recv ZSGSRD 30557
17-03-18 05:17:48.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:48.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.804 -07 000000480 INF: FPGA: Recv ZSGSRD 30554
17-03-18 05:17:48.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.814 -07 000000579 INF: FPGA: Recv ZSGSRD 30559
17-03-18 05:17:48.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.824 -07 000000447 INF: FPGA: Recv ZSGSRD 30560
17-03-18 05:17:48.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.834 -07 000000608 INF: FPGA: Recv ZSGSRD 30556
17-03-18 05:17:48.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.844 -07 000000581 INF: FPGA: Recv ZSGSRD 30554
17-03-18 05:17:48.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.854 -07 000000461 INF: FPGA: Recv ZSGSRD 30553
17-03-18 05:17:48.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.864 -07 000000480 INF: FPGA: Recv ZSGSRD 30560
17-03-18 05:17:48.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.874 -07 000000467 INF: FPGA: Recv ZSGSRD 30560
17-03-18 05:17:48.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:48.884 -07 000000608 INF: FPGA: Recv ZSGSRD 30559
17-03-18 05:17:48.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.894 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:48.894 -07 000000382 INF: FPGA: Recv ZPIEZORD 26325
17-03-18 05:17:48.904 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:48.904 -07 000000424 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.3 V.
17-03-18 05:17:48.904 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30557 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30558 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30553 (-135.8 uncal um), Max = 30560 (-135.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:17:48.904 -07 000000424 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30557, posNoise = 3, negNoise = 4
17-03-18 05:17:48.904 -07 000000424 INF: Z Motor: After move to -0.136626, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:48.904 -07 000000424 INF: Z Motor: Settle wait time = 1480 ms, measure time = 105 ms (allowed 150 ms), total time = 1585 ms
17-03-18 05:17:48.904 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:48.954 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 05:17:48.954 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:48.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:48.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:48.954 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:48.954 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:17:48.954 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:48.954 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:48.954 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:48.954 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:17:48.964 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:17:48.964 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:17:48.974 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:17:48.974 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:17:48.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:17:49.024 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:17:49.324 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:17:49.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:17:49.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:17:49.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:17:49.364 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:17:49.364 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:17:49.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:17:49.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:17:49.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:49.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:17:49.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:17:49.464 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:17:49.464 -07 000000618 INF: Autofocus start
17-03-18 05:17:49.464 -07 000000618 INF: MeasureProfile start
17-03-18 05:17:49.464 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:17:49.474 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:49.474 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:17:49.474 -07 000000618 INF: MeasureProfile done
17-03-18 05:17:49.474 -07 000000618 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 05:17:49.474 -07 000000618 INF: Autofocus finished
17-03-18 05:17:49.674 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:17:49.674 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:17:49.674 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136628002426925. ----------
17-03-18 05:17:49.684 -07 000000610 INF: Cycle	135	Tile	12	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:49.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28273, sync = True, waitForSettling = True)
17-03-18 05:17:49.684 -07 000000610 INF: Z Motor: Moving to -0.129425 mm, started at -0.136628 mm, distance = 7.20 um
17-03-18 05:17:49.684 -07 000000610 INF: FPGA: Xmit ZDACW 28273\n [Z Motor]
17-03-18 05:17:49.684 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:17:49.694 -07 000000610 INF: FPGA: 'ZDACW 28273' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:17:49.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:49.694 -07 000000512 INF: FPGA: Recv ZDACR 28273
17-03-18 05:17:49.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:49.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.854 -07 000000455 INF: FPGA: Recv ZSGSRD 29441
17-03-18 05:17:49.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:49.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.864 -07 000000424 INF: FPGA: Recv ZSGSRD 29438
17-03-18 05:17:49.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.874 -07 000000474 INF: FPGA: Recv ZSGSRD 29435
17-03-18 05:17:49.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.884 -07 000000502 INF: FPGA: Recv ZSGSRD 29434
17-03-18 05:17:49.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.894 -07 000000479 INF: FPGA: Recv ZSGSRD 29435
17-03-18 05:17:49.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.904 -07 000000461 INF: FPGA: Recv ZSGSRD 29434
17-03-18 05:17:49.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.914 -07 000000569 INF: FPGA: Recv ZSGSRD 29434
17-03-18 05:17:49.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29434
17-03-18 05:17:49.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29435
17-03-18 05:17:49.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:49.944 -07 000000512 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:17:49.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:49.954 -07 000000606 INF: FPGA: Recv ZPIEZORD 24898
17-03-18 05:17:49.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:49.964 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -10.0 V.
17-03-18 05:17:49.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29436 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29435 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29434 (-128.6 uncal um), Max = 29441 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:17:49.964 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29436, posNoise = 5, negNoise = 2
17-03-18 05:17:49.964 -07 000000610 INF: Z Motor: After move to -0.129425, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:49.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:17:49.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:49.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:49.964 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:49.964 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:49.964 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:49.964 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:49.964 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:49.964 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:49.964 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:17:49.964 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:49.964 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:49.964 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:49.974 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:49.974 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:49.974 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:49.974 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:49.984 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:17:49.984 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:17:49.984 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:17:49.984 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:17:49.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28450 150\n [Camera]
17-03-18 05:17:50.184 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:50.614 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:50.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:50.614 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:50.614 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:50.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:17:50.624 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:50.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:50.624 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:50.624 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:50.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:17:50.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28450 820
17-03-18 05:17:50.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:50.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:17:50.994 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:17:50.994 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:50.994 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:17:50.994 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:17:50.994 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:50.994 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:50.994 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:17:51.004 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:51.014 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:17:51.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:51.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:51.174 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:51.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:51.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:51.174 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:51.174 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:17:51.174 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:51.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:51.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:17:51.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:51.364 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:51.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28450 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-18 05:17:51.364 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.129902
17-03-18 05:17:51.364 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.12990 mm
17-03-18 05:17:51.364 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:51.364 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:17:51.364 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:17:51.364 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 28377, sync = True, waitForSettling = False)
17-03-18 05:17:51.364 -07 000000581 INF: Z Motor: Moving to -0.129902 mm, started at -0.129426 mm, distance = -0.48 um
17-03-18 05:17:51.364 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:51.364 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:17:51.374 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:51.374 -07 000000424 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:51.374 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:51.374 -07 000000424 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:17:51.494 -07 000000581 INF: FPGA: Xmit ZDACW 28377\n [Z Motor]
17-03-18 05:17:51.494 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:17:51.504 -07 000000581 INF: FPGA: 'ZDACW 28377' command took 120 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 05:17:51.504 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:51.504 -07 000000579 INF: FPGA: Recv ZDACR 28377
17-03-18 05:17:51.514 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:51.514 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:51.514 -07 000000581 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-18 05:17:51.564 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:17:51.564 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:17:51.564 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:51.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:17:51.564 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:17:51.564 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:51.574 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:51.574 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:51.574 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:17:51.574 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:17:51.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:51.884 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:17:51.884 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:17:51.934 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:51.944 -07 000000447 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:17:51.944 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:17:51.944 -07 000000424 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:51.944 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:17:51.944 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 517 ms, distance = 0.846 mm, average velocity = 1.637 mm/sec
17-03-18 05:17:52.894 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:52.894 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:17:52.904 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:52.904 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:52.934 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:52.934 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:17:52.934 -07 000000424 INF: Y Motor: Moved to 69.8628 after 1565 ms (table move)
17-03-18 05:17:52.934 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129902 mm (DAC = 28377)
17-03-18 05:17:52.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:17:52.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:52.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.944 -07 000000569 INF: FPGA: Recv ZSGSRD 29515
17-03-18 05:17:52.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:52.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.954 -07 000000625 INF: FPGA: Recv ZSGSRD 29507
17-03-18 05:17:52.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:52.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.964 -07 000000501 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:17:52.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:52.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.974 -07 000000606 INF: FPGA: Recv ZSGSRD 29505
17-03-18 05:17:52.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:52.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.984 -07 000000608 INF: FPGA: Recv ZSGSRD 29508
17-03-18 05:17:52.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:52.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:52.994 -07 000000455 INF: FPGA: Recv ZSGSRD 29506
17-03-18 05:17:53.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.004 -07 000000569 INF: FPGA: Recv ZSGSRD 29507
17-03-18 05:17:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.014 -07 000000382 INF: FPGA: Recv ZSGSRD 29514
17-03-18 05:17:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.024 -07 000000579 INF: FPGA: Recv ZSGSRD 29516
17-03-18 05:17:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:53.034 -07 000000625 INF: FPGA: Recv ZPIEZORD 24986
17-03-18 05:17:53.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.044 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.9 V.
17-03-18 05:17:53.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29509 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29505 (-129.1 uncal um), Max = 29516 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:17:53.044 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29509, posNoise = 7, negNoise = 4
17-03-18 05:17:53.044 -07 000000610 INF: Z Motor: After move to -0.129902, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:53.044 -07 000000610 INF: Z Motor: Settle wait time = 1568 ms, measure time = 106 ms (allowed 150 ms), total time = 1674 ms
17-03-18 05:17:53.044 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:53.094 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 05:17:53.094 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:53.094 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.129895428102359. ----------
17-03-18 05:17:53.094 -07 000000610 INF: Cycle	135	Tile	13	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:53.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28200, sync = True, waitForSettling = True)
17-03-18 05:17:53.094 -07 000000610 INF: Z Motor: Moving to -0.129091 mm, started at -0.129895 mm, distance = 0.80 um
17-03-18 05:17:53.094 -07 000000610 INF: FPGA: Xmit ZDACW 28200\n [Z Motor]
17-03-18 05:17:53.094 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:17:53.104 -07 000000610 INF: FPGA: 'ZDACW 28200' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:53.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:53.104 -07 000000608 INF: FPGA: Recv ZDACR 28200
17-03-18 05:17:53.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:53.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.264 -07 000000382 INF: FPGA: Recv ZSGSRD 29387
17-03-18 05:17:53.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:53.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.274 -07 000000581 INF: FPGA: Recv ZSGSRD 29383
17-03-18 05:17:53.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29384
17-03-18 05:17:53.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.294 -07 000000502 INF: FPGA: Recv ZSGSRD 29382
17-03-18 05:17:53.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.304 -07 000000606 INF: FPGA: Recv ZSGSRD 29379
17-03-18 05:17:53.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.314 -07 000000447 INF: FPGA: Recv ZSGSRD 29381
17-03-18 05:17:53.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.324 -07 000000480 INF: FPGA: Recv ZSGSRD 29389
17-03-18 05:17:53.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.334 -07 000000461 INF: FPGA: Recv ZSGSRD 29384
17-03-18 05:17:53.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.344 -07 000000467 INF: FPGA: Recv ZSGSRD 29384
17-03-18 05:17:53.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:53.354 -07 000000581 INF: FPGA: Recv ZSGSRD 29386
17-03-18 05:17:53.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:53.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:53.364 -07 000000479 INF: FPGA: Recv ZPIEZORD 24861
17-03-18 05:17:53.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:53.374 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.9 V.
17-03-18 05:17:53.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29384 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29384 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29379 (-128.3 uncal um), Max = 29389 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:53.374 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29384, posNoise = 5, negNoise = 5
17-03-18 05:17:53.374 -07 000000610 INF: Z Motor: After move to -0.129091, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:53.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:53.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:53.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:53.374 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:53.374 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:53.374 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:53.374 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:53.374 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:53.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:53.374 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:53.374 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:53.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:53.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:53.384 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:17:53.384 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:53.384 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:53.384 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:53.394 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:17:53.394 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:17:53.394 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:17:53.394 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:53.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28377 150\n [Camera]
17-03-18 05:17:53.604 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:54.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:54.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:54.044 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:54.044 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:54.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:54.044 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:54.044 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:54.044 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:17:54.054 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.0344,
17-03-18 05:17:54.054 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:54.054 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:17:54.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28377 822
17-03-18 05:17:54.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:54.424 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:17:54.424 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:17:54.424 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:54.424 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:17:54.424 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 05:17:54.424 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:54.424 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:54.424 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:54.424 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:17:54.434 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:17:54.594 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:54.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:54.594 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:54.594 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:54.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:17:54.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:54.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:54.604 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:54.604 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:54.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:17:54.784 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:17:54.784 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:54.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28377 150' command took 2 ms to send, 1366 ms to get response, and 1379 ms overall
17-03-18 05:17:54.784 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129473
17-03-18 05:17:54.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12947 mm
17-03-18 05:17:54.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:54.794 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:17:54.794 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:17:54.794 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:54.794 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 28283, sync = True, waitForSettling = False)
17-03-18 05:17:54.794 -07 000000579 INF: Z Motor: Moving to -0.129471 mm, started at -0.129092 mm, distance = -0.38 um
17-03-18 05:17:54.794 -07 000000474 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:17:54.804 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:54.804 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:54.804 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:54.804 -07 000000424 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:17:54.804 -07 000000579 INF: FPGA: Xmit ZDACW 28283\n [Z Motor]
17-03-18 05:17:54.804 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:17:54.814 -07 000000579 INF: FPGA: 'ZDACW 28283' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:17:54.814 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:54.824 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:54.824 -07 000000608 INF: FPGA: Recv ZDACR 28283
17-03-18 05:17:54.834 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:17:54.834 -07 000000579 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:17:54.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:17:54.974 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:17:54.974 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:54.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:54.984 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:17:54.984 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:17:54.984 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:17:54.984 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:54.984 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:17:54.994 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:17:55.184 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:17:55.184 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:17:55.244 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:55.244 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:17:55.254 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:17:55.254 -07 000000424 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:55.254 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:17:55.254 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 05:17:56.204 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:56.204 -07 000000461 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:17:56.214 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.214 -07 000000424 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:56.244 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:56.244 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:56.244 -07 000000424 INF: Y Motor: Moved to 70.6875 after 1452 ms (table move)
17-03-18 05:17:56.244 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129471 mm (DAC = 28283)
17-03-18 05:17:56.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.244 -07 000000455 INF: FPGA: Recv ZSGSRD 29446
17-03-18 05:17:56.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:17:56.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.254 -07 000000606 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:17:56.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.264 -07 000000581 INF: FPGA: Recv ZSGSRD 29437
17-03-18 05:17:56.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.274 -07 000000625 INF: FPGA: Recv ZSGSRD 29444
17-03-18 05:17:56.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.284 -07 000000579 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:17:56.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.294 -07 000000455 INF: FPGA: Recv ZSGSRD 29443
17-03-18 05:17:56.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.304 -07 000000606 INF: FPGA: Recv ZSGSRD 29437
17-03-18 05:17:56.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.314 -07 000000581 INF: FPGA: Recv ZSGSRD 29448
17-03-18 05:17:56.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.324 -07 000000480 INF: FPGA: Recv ZSGSRD 29445
17-03-18 05:17:56.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.334 -07 000000512 INF: FPGA: Recv ZSGSRD 29443
17-03-18 05:17:56.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:56.344 -07 000000447 INF: FPGA: Recv ZPIEZORD 24940
17-03-18 05:17:56.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:17:56.354 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.9 V.
17-03-18 05:17:56.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29442 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29443 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29437 (-128.7 uncal um), Max = 29448 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:56.354 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29442, posNoise = 6, negNoise = 5
17-03-18 05:17:56.354 -07 000000610 INF: Z Motor: After move to -0.129471, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:56.354 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:17:56.354 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:56.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 05:17:56.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:56.404 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.129465005888861. ----------
17-03-18 05:17:56.404 -07 000000610 INF: Cycle	135	Tile	14	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:56.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28107, sync = True, waitForSettling = True)
17-03-18 05:17:56.404 -07 000000610 INF: Z Motor: Moving to -0.128666 mm, started at -0.129465 mm, distance = 0.80 um
17-03-18 05:17:56.404 -07 000000610 INF: FPGA: Xmit ZDACW 28107\n [Z Motor]
17-03-18 05:17:56.414 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:17:56.414 -07 000000610 INF: FPGA: 'ZDACW 28107' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:17:56.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:56.414 -07 000000467 INF: FPGA: Recv ZDACR 28107
17-03-18 05:17:56.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:56.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.574 -07 000000608 INF: FPGA: Recv ZSGSRD 29319
17-03-18 05:17:56.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:56.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.584 -07 000000461 INF: FPGA: Recv ZSGSRD 29316
17-03-18 05:17:56.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29318
17-03-18 05:17:56.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.604 -07 000000480 INF: FPGA: Recv ZSGSRD 29314
17-03-18 05:17:56.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.614 -07 000000382 INF: FPGA: Recv ZSGSRD 29318
17-03-18 05:17:56.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29323
17-03-18 05:17:56.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.634 -07 000000474 INF: FPGA: Recv ZSGSRD 29318
17-03-18 05:17:56.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.644 -07 000000447 INF: FPGA: Recv ZSGSRD 29320
17-03-18 05:17:56.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.654 -07 000000461 INF: FPGA: Recv ZSGSRD 29318
17-03-18 05:17:56.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:56.664 -07 000000467 INF: FPGA: Recv ZSGSRD 29316
17-03-18 05:17:56.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:56.674 -07 000000501 INF: FPGA: Recv ZPIEZORD 24752
17-03-18 05:17:56.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:56.684 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -10.0 V.
17-03-18 05:17:56.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29314 (-127.9 uncal um), Max = 29323 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:17:56.684 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 5, negNoise = 4
17-03-18 05:17:56.684 -07 000000610 INF: Z Motor: After move to -0.128666, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:56.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 05:17:56.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:56.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:56.684 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:56.684 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:56.684 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:56.684 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:56.684 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:56.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:56.684 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:56.684 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:56.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:56.684 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:56.694 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:17:56.694 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:17:56.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:17:56.694 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:17:56.704 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:17:56.704 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:17:56.704 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:17:56.704 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:17:56.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28283 150\n [Camera]
17-03-18 05:17:56.754 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:17:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:17:56.904 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:17:57.344 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:17:57.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:17:57.344 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:57.344 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:57.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:17:57.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:17:57.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:17:57.344 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:57.344 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:57.344 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:17:57.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28283 820
17-03-18 05:17:57.684 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:17:57.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:17:57.724 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:17:57.724 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:57.734 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:17:57.734 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:17:57.734 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:57.734 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:57.734 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:17:57.734 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:57.744 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:17:57.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:17:57.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:17:57.894 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:17:57.894 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:17:57.894 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:17:57.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:17:57.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:17:57.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:17:57.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:17:57.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:17:58.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:17:58.084 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:17:58.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28283 150' command took 2 ms to send, 1366 ms to get response, and 1378 ms overall
17-03-18 05:17:58.084 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129514
17-03-18 05:17:58.084 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12951 mm
17-03-18 05:17:58.084 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:17:58.094 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:17:58.094 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:17:58.094 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:58.094 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28292, sync = True, waitForSettling = False)
17-03-18 05:17:58.094 -07 000000382 INF: Z Motor: Moving to -0.129512 mm, started at -0.128668 mm, distance = -0.84 um
17-03-18 05:17:58.094 -07 000000625 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:17:58.104 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:58.104 -07 000000569 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:58.104 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:17:58.104 -07 000000569 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:17:58.104 -07 000000382 INF: FPGA: Xmit ZDACW 28292\n [Z Motor]
17-03-18 05:17:58.104 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:17:58.114 -07 000000382 INF: FPGA: 'ZDACW 28292' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:17:58.114 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:58.114 -07 000000581 INF: FPGA: Recv ZDACR 28292
17-03-18 05:17:58.124 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:58.124 -07 000000382 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 05:17:58.124 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:17:58.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:17:58.274 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:17:58.274 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:58.274 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:17:58.274 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:17:58.274 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:17:58.284 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:17:58.284 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:17:58.284 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:17:58.294 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:17:58.494 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:17:58.494 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:17:58.554 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:58.554 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:17:58.564 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:58.564 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:58.564 -07 000000569 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:17:58.564 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 05:17:59.414 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.065709,
17-03-18 05:17:59.514 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:17:59.514 -07 000000606 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:17:59.524 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.524 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:17:59.554 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:17:59.554 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:17:59.554 -07 000000569 INF: Y Motor: Moved to 71.5181 after 1460 ms (table move)
17-03-18 05:17:59.554 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129512 mm (DAC = 28292)
17-03-18 05:17:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.554 -07 000000501 INF: FPGA: Recv ZSGSRD 29448
17-03-18 05:17:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:17:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.564 -07 000000455 INF: FPGA: Recv ZSGSRD 29449
17-03-18 05:17:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.574 -07 000000618 INF: FPGA: Recv ZSGSRD 29453
17-03-18 05:17:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29447
17-03-18 05:17:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.594 -07 000000579 INF: FPGA: Recv ZSGSRD 29451
17-03-18 05:17:59.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.604 -07 000000501 INF: FPGA: Recv ZSGSRD 29452
17-03-18 05:17:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.614 -07 000000512 INF: FPGA: Recv ZSGSRD 29447
17-03-18 05:17:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.624 -07 000000579 INF: FPGA: Recv ZSGSRD 29450
17-03-18 05:17:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.634 -07 000000608 INF: FPGA: Recv ZSGSRD 29452
17-03-18 05:17:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.644 -07 000000581 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:17:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:59.654 -07 000000618 INF: FPGA: Recv ZPIEZORD 24944
17-03-18 05:17:59.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.664 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.9 V.
17-03-18 05:17:59.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29450 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29447 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:17:59.664 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29450, posNoise = 6, negNoise = 3
17-03-18 05:17:59.664 -07 000000610 INF: Z Motor: After move to -0.129512, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:59.664 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:17:59.664 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:17:59.714 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 05:17:59.714 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:17:59.714 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.129516399585995. ----------
17-03-18 05:17:59.714 -07 000000610 INF: Cycle	135	Tile	15	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:17:59.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28115, sync = True, waitForSettling = True)
17-03-18 05:17:59.714 -07 000000610 INF: Z Motor: Moving to -0.128702 mm, started at -0.129516 mm, distance = 0.81 um
17-03-18 05:17:59.714 -07 000000610 INF: FPGA: Xmit ZDACW 28115\n [Z Motor]
17-03-18 05:17:59.714 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:17:59.724 -07 000000610 INF: FPGA: 'ZDACW 28115' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:17:59.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:17:59.724 -07 000000618 INF: FPGA: Recv ZDACR 28115
17-03-18 05:17:59.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:17:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.884 -07 000000608 INF: FPGA: Recv ZSGSRD 29329
17-03-18 05:17:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:17:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.894 -07 000000474 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:17:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.904 -07 000000625 INF: FPGA: Recv ZSGSRD 29321
17-03-18 05:17:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.914 -07 000000479 INF: FPGA: Recv ZSGSRD 29325
17-03-18 05:17:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29331
17-03-18 05:17:59.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29324
17-03-18 05:17:59.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.944 -07 000000467 INF: FPGA: Recv ZSGSRD 29322
17-03-18 05:17:59.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.954 -07 000000424 INF: FPGA: Recv ZSGSRD 29328
17-03-18 05:17:59.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.964 -07 000000512 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:17:59.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:17:59.974 -07 000000579 INF: FPGA: Recv ZSGSRD 29324
17-03-18 05:17:59.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:17:59.984 -07 000000608 INF: FPGA: Recv ZPIEZORD 24768
17-03-18 05:17:59.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:17:59.994 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -10.0 V.
17-03-18 05:17:59.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29326 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29321 (-127.9 uncal um), Max = 29331 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:17:59.994 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29326, posNoise = 5, negNoise = 5
17-03-18 05:17:59.994 -07 000000610 INF: Z Motor: After move to -0.128702, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:17:59.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:17:59.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:17:59.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:17:59.994 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:17:59.994 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:17:59.994 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:17:59.994 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:17:59.994 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:17:59.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:17:59.994 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:17:59.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:17:59.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:17:59.994 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:17:59.994 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:17:59.994 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:18:00.004 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:18:00.004 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:18:00.014 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:18:00.014 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:18:00.014 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:18:00.014 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:18:00.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28292 150\n [Camera]
17-03-18 05:18:00.214 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:18:00.654 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:18:00.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:18:00.654 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:00.654 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:00.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:18:00.654 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:18:00.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:18:00.654 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:00.654 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:00.654 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:18:00.844 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28292 820
17-03-18 05:18:00.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:18:01.034 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:18:01.034 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:18:01.034 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:01.034 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:18:01.034 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:18:01.034 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:01.034 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:18:01.034 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:18:01.034 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:01.044 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:18:01.204 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:18:01.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:18:01.204 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:01.344 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:01.344 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:18:01.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:18:01.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:18:01.344 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:01.344 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:01.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:18:01.394 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:18:01.394 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:18:01.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28292 150' command took 4 ms to send, 1366 ms to get response, and 1378 ms overall
17-03-18 05:18:01.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:18:01.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128719797280417. ------
17-03-18 05:18:01.404 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13502 mm
17-03-18 05:18:01.404 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:18:01.404 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:01.404 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:18:01.404 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:18:01.404 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29496, sync = True, waitForSettling = False)
17-03-18 05:18:01.404 -07 000000579 INF: Z Motor: Moving to -0.135024 mm, started at -0.128720 mm, distance = -6.30 um
17-03-18 05:18:01.404 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:01.414 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:18:01.414 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:01.414 -07 000000461 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:18:01.424 -07 000000579 INF: FPGA: Xmit ZDACW 29496\n [Z Motor]
17-03-18 05:18:01.424 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:18:01.424 -07 000000424 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:01.424 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:18:01.424 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:18:01.424 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:18:01.434 -07 000000579 INF: FPGA: 'ZDACW 29496' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:18:01.434 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:18:01.444 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:18:01.454 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:01.454 -07 000000382 INF: FPGA: Recv ZDACR 29496
17-03-18 05:18:01.464 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:18:01.464 -07 000000579 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:18:01.634 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:18:01.634 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:18:01.714 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:18:01.724 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:18:01.724 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:01.724 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:01.724 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:18:01.724 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:18:01.724 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:01.724 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:01.724 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 05:18:01.734 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:18:01.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:18:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:18:01.814 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:18:01.814 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:18:01.874 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:01.874 -07 000000455 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:18:01.884 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:01.884 -07 000000424 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:01.884 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:18:01.884 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 05:18:02.834 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:02.834 -07 000000608 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:18:02.844 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:02.844 -07 000000424 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:02.874 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:18:02.874 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:18:02.874 -07 000000424 INF: Y Motor: Moved to 72.3486 after 1466 ms (table move)
17-03-18 05:18:02.874 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135024 mm (DAC = 29496)
17-03-18 05:18:02.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.874 -07 000000625 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:18:02.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:18:02.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.884 -07 000000626 INF: FPGA: Recv ZSGSRD 30309
17-03-18 05:18:02.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:02.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.894 -07 000000501 INF: FPGA: Recv ZSGSRD 30299
17-03-18 05:18:02.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30307
17-03-18 05:18:02.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.914 -07 000000480 INF: FPGA: Recv ZSGSRD 30307
17-03-18 05:18:02.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.924 -07 000000625 INF: FPGA: Recv ZSGSRD 30308
17-03-18 05:18:02.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.934 -07 000000569 INF: FPGA: Recv ZSGSRD 30311
17-03-18 05:18:02.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.944 -07 000000626 INF: FPGA: Recv ZSGSRD 30310
17-03-18 05:18:02.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.954 -07 000000502 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:18:02.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:02.964 -07 000000455 INF: FPGA: Recv ZSGSRD 30309
17-03-18 05:18:02.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.974 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:02.974 -07 000000424 INF: FPGA: Recv ZPIEZORD 26096
17-03-18 05:18:02.984 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:02.984 -07 000000512 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-18 05:18:02.984 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30309 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30309 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30299 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:18:02.984 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30309, posNoise = 7, negNoise = 10
17-03-18 05:18:02.984 -07 000000512 INF: Z Motor: After move to -0.135024, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:02.984 -07 000000512 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:18:02.984 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:18:03.034 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 05:18:03.034 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:18:03.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:03.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:03.034 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:03.034 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:18:03.034 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:03.034 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:03.034 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:03.034 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:18:03.044 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:18:03.044 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:18:03.054 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:18:03.054 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:18:03.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:18:03.104 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:18:03.404 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:18:03.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:18:03.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:18:03.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:18:03.444 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:18:03.444 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:18:03.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 05:18:03.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 05:18:03.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:03.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:18:03.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 05:18:03.544 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:03.544 -07 000000447 INF: Autofocus start
17-03-18 05:18:03.544 -07 000000447 INF: MeasureProfile start
17-03-18 05:18:03.544 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:03.554 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:18:03.554 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:18:03.564 -07 000000447 INF: MeasureProfile done
17-03-18 05:18:03.564 -07 000000447 INF: X=-112  Z correction [um]=-0.5485987
17-03-18 05:18:03.564 -07 000000447 INF: Autofocus finished
17-03-18 05:18:03.754 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:18:03.754 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:18:03.754 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-18 05:18:03.754 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.135034797815768. ----------
17-03-18 05:18:03.754 -07 000000610 INF: Cycle	135	Tile	16	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:18:03.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27889, sync = True, waitForSettling = True)
17-03-18 05:18:03.764 -07 000000610 INF: Z Motor: Moving to -0.127668 mm, started at -0.135035 mm, distance = 7.37 um
17-03-18 05:18:03.764 -07 000000610 INF: FPGA: Xmit ZDACW 27889\n [Z Motor]
17-03-18 05:18:03.764 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:18:03.774 -07 000000610 INF: FPGA: 'ZDACW 27889' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:18:03.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:03.774 -07 000000424 INF: FPGA: Recv ZDACR 27889
17-03-18 05:18:03.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:03.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:18:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.934 -07 000000501 INF: FPGA: Recv ZSGSRD 29164
17-03-18 05:18:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.944 -07 000000479 INF: FPGA: Recv ZSGSRD 29158
17-03-18 05:18:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.954 -07 000000461 INF: FPGA: Recv ZSGSRD 29165
17-03-18 05:18:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.964 -07 000000467 INF: FPGA: Recv ZSGSRD 29160
17-03-18 05:18:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:03.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.974 -07 000000447 INF: FPGA: Recv ZSGSRD 29164
17-03-18 05:18:03.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:03.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.984 -07 000000424 INF: FPGA: Recv ZSGSRD 29167
17-03-18 05:18:03.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:03.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:03.994 -07 000000608 INF: FPGA: Recv ZSGSRD 29160
17-03-18 05:18:04.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:04.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:04.004 -07 000000461 INF: FPGA: Recv ZSGSRD 29166
17-03-18 05:18:04.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:04.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:04.014 -07 000000608 INF: FPGA: Recv ZSGSRD 29163
17-03-18 05:18:04.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:04.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:04.024 -07 000000579 INF: FPGA: Recv ZSGSRD 29161
17-03-18 05:18:04.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:04.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:04.034 -07 000000625 INF: FPGA: Recv ZPIEZORD 24605
17-03-18 05:18:04.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:04.044 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.256 V. Piezo Error = -10.0 V.
17-03-18 05:18:04.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29164 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29158 (-126.9 uncal um), Max = 29167 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:18:04.044 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 4, negNoise = 5
17-03-18 05:18:04.044 -07 000000610 INF: Z Motor: After move to -0.127668, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:04.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:18:04.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:04.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:04.044 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:04.044 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:18:04.044 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:04.044 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:04.044 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:18:04.044 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:18:04.044 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:04.044 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:18:04.044 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:18:04.044 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:18:04.054 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:18:04.054 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:18:04.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:18:04.054 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:18:04.064 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:18:04.064 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:18:04.064 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:18:04.064 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:18:04.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28065 150\n [Camera]
17-03-18 05:18:04.264 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:18:04.704 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:18:04.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:18:04.704 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:04.704 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:04.704 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:18:04.704 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:18:04.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:18:04.704 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:04.704 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:04.704 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:18:04.774 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.026244,
17-03-18 05:18:04.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28065 820
17-03-18 05:18:05.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:18:05.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:18:05.084 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:18:05.084 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:05.084 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:18:05.084 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:18:05.084 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:05.084 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:05.084 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:18:05.094 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:05.094 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:18:05.254 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:18:05.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:18:05.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:05.364 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:05.364 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:18:05.364 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:18:05.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:18:05.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:05.374 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:05.374 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 05:18:05.444 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:18:05.444 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:18:05.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28065 150' command took 2 ms to send, 1374 ms to get response, and 1378 ms overall
17-03-18 05:18:05.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:18:05.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.12767265070131. ------
17-03-18 05:18:05.444 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:05.444 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13422 mm
17-03-18 05:18:05.444 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:18:05.454 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:05.454 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:18:05.454 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29320, sync = True, waitForSettling = False)
17-03-18 05:18:05.454 -07 000000424 INF: Z Motor: Moving to -0.134218 mm, started at -0.127673 mm, distance = -6.55 um
17-03-18 05:18:05.454 -07 000000424 INF: FPGA: Xmit ZDACW 29320\n [Z Motor]
17-03-18 05:18:05.454 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:18:05.454 -07 000000455 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:18:05.454 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:18:05.464 -07 000000424 INF: FPGA: 'ZDACW 29320' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:18:05.464 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:18:05.474 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:05.474 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:18:05.484 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:05.484 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:18:05.484 -07 000000455 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:05.484 -07 000000455 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:18:05.484 -07 000000455 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:18:05.484 -07 000000569 INF: FPGA: Recv ZDACR 29320
17-03-18 05:18:05.494 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:18:05.494 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:18:05.494 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:18:05.664 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:18:05.664 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 05:18:05.754 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:18:05.754 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:18:05.754 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:05.754 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:18:05.754 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:18:05.754 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:05.764 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:18:05.764 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:18:05.764 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 05:18:05.774 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:18:05.864 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:18:05.864 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 05:18:05.914 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:05.924 -07 000000625 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:18:05.924 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:18:05.924 -07 000000455 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:05.924 -07 000000455 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:18:05.924 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-18 05:18:06.754 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:18:06.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:18:06.874 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:06.874 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:18:06.884 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:06.884 -07 000000455 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:06.914 -07 000000455 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:18:06.914 -07 000000455 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:18:06.914 -07 000000455 INF: Y Motor: Moved to 73.1753 after 1458 ms (table move)
17-03-18 05:18:06.914 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134218 mm (DAC = 29320)
17-03-18 05:18:06.914 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.914 -07 000000474 INF: FPGA: Recv ZSGSRD 30184
17-03-18 05:18:06.924 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:18:06.924 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.924 -07 000000467 INF: FPGA: Recv ZSGSRD 30180
17-03-18 05:18:06.934 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.934 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.934 -07 000000626 INF: FPGA: Recv ZSGSRD 30185
17-03-18 05:18:06.944 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.944 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.944 -07 000000618 INF: FPGA: Recv ZSGSRD 30183
17-03-18 05:18:06.954 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.954 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.954 -07 000000447 INF: FPGA: Recv ZSGSRD 30186
17-03-18 05:18:06.964 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.964 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.964 -07 000000461 INF: FPGA: Recv ZSGSRD 30183
17-03-18 05:18:06.974 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30175
17-03-18 05:18:06.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.984 -07 000000606 INF: FPGA: Recv ZSGSRD 30182
17-03-18 05:18:06.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:06.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:06.994 -07 000000618 INF: FPGA: Recv ZSGSRD 30184
17-03-18 05:18:07.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:07.004 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:07.004 -07 000000447 INF: FPGA: Recv ZSGSRD 30180
17-03-18 05:18:07.014 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:07.014 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:07.014 -07 000000581 INF: FPGA: Recv ZPIEZORD 25977
17-03-18 05:18:07.024 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:07.024 -07 000000579 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.474 V. Piezo Error = -9.2 V.
17-03-18 05:18:07.024 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30182 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30183 (-133.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30175 (-133.4 uncal um), Max = 30186 (-133.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:18:07.024 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30182, posNoise = 4, negNoise = 7
17-03-18 05:18:07.024 -07 000000579 INF: Z Motor: After move to -0.134218, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:07.024 -07 000000579 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:18:07.024 -07 000000579 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:18:07.074 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:18:07.074 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:18:07.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:07.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:07.074 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:07.074 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:07.074 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:18:07.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:07.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:07.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:18:07.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:18:07.084 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:18:07.094 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:18:07.094 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:18:07.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:18:07.144 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:18:07.444 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:18:07.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:18:07.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:18:07.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:18:07.484 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:18:07.484 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:18:07.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:18:07.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:18:07.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:07.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:18:07.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:18:07.584 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:07.584 -07 000000502 INF: Autofocus start
17-03-18 05:18:07.584 -07 000000502 INF: MeasureProfile start
17-03-18 05:18:07.584 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:07.594 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:18:07.594 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:18:07.604 -07 000000502 INF: MeasureProfile done
17-03-18 05:18:07.604 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:18:07.604 -07 000000502 INF: Autofocus finished
17-03-18 05:18:07.794 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:18:07.794 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:18:07.794 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134218922873764. ----------
17-03-18 05:18:07.794 -07 000000610 INF: Cycle	135	Tile	17	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:18:07.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27861, sync = True, waitForSettling = True)
17-03-18 05:18:07.804 -07 000000610 INF: Z Motor: Moving to -0.127539 mm, started at -0.134219 mm, distance = 6.68 um
17-03-18 05:18:07.804 -07 000000610 INF: FPGA: Xmit ZDACW 27861\n [Z Motor]
17-03-18 05:18:07.804 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:18:07.814 -07 000000610 INF: FPGA: 'ZDACW 27861' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:18:07.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:07.814 -07 000000581 INF: FPGA: Recv ZDACR 27861
17-03-18 05:18:07.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:07.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:18:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:07.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29144
17-03-18 05:18:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:07.984 -07 000000447 INF: FPGA: Recv ZSGSRD 29143
17-03-18 05:18:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:07.994 -07 000000501 INF: FPGA: Recv ZSGSRD 29139
17-03-18 05:18:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.004 -07 000000569 INF: FPGA: Recv ZSGSRD 29144
17-03-18 05:18:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.014 -07 000000581 INF: FPGA: Recv ZSGSRD 29139
17-03-18 05:18:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.024 -07 000000382 INF: FPGA: Recv ZSGSRD 29146
17-03-18 05:18:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.034 -07 000000579 INF: FPGA: Recv ZSGSRD 29137
17-03-18 05:18:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.044 -07 000000480 INF: FPGA: Recv ZSGSRD 29147
17-03-18 05:18:08.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.054 -07 000000618 INF: FPGA: Recv ZSGSRD 29142
17-03-18 05:18:08.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:08.064 -07 000000608 INF: FPGA: Recv ZSGSRD 29143
17-03-18 05:18:08.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:08.074 -07 000000512 INF: FPGA: Recv ZPIEZORD 24609
17-03-18 05:18:08.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:08.084 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -9.9 V.
17-03-18 05:18:08.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29142 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29143 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29137 (-126.7 uncal um), Max = 29147 (-126.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:18:08.084 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29142, posNoise = 5, negNoise = 5
17-03-18 05:18:08.084 -07 000000610 INF: Z Motor: After move to -0.127539, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:08.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:18:08.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:08.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:08.084 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:08.084 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:08.084 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:18:08.084 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:18:08.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:08.084 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:18:08.084 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:18:08.084 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:18:08.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:08.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:18:08.094 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:18:08.094 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:18:08.094 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:18:08.094 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:18:08.104 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:18:08.104 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:18:08.104 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:18:08.104 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:18:08.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 28037 150\n [Camera]
17-03-18 05:18:08.304 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:18:08.744 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629
17-03-18 05:18:08.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629
17-03-18 05:18:08.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:08.744 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:08.744 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 05:18:08.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629
17-03-18 05:18:08.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629
17-03-18 05:18:08.744 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:08.744 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:08.744 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 05:18:08.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28037 820
17-03-18 05:18:09.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:18:09.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:18:09.124 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:18:09.124 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:09.124 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:09.244 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 499 ms.
17-03-18 05:18:09.244 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 05:18:09.244 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:09.244 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-18 05:18:09.254 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:09.254 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 05:18:09.294 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:18:09.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:18:09.294 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:09.294 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:18:09.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:18:09.294 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:09.304 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:09.304 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:18:09.304 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:09.304 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:18:09.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:18:09.484 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:18:09.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 28037 150' command took 2 ms to send, 1374 ms to get response, and 1381 ms overall
17-03-18 05:18:09.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:18:09.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127537742246333. ------
17-03-18 05:18:09.484 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13337 mm
17-03-18 05:18:09.484 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:18:09.484 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:09.494 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:09.494 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:18:09.494 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:18:09.494 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:18:09.494 -07 000000455 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:18:09.494 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29134, sync = True, waitForSettling = False)
17-03-18 05:18:09.494 -07 000000606 INF: Z Motor: Moving to -0.133367 mm, started at -0.127538 mm, distance = -5.83 um
17-03-18 05:18:09.504 -07 000000606 INF: FPGA: Xmit ZDACW 29134\n [Z Motor]
17-03-18 05:18:09.504 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:18:09.514 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:09.514 -07 000000606 INF: FPGA: 'ZDACW 29134' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:18:09.514 -07 000000581 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:18:09.524 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:18:09.524 -07 000000455 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:09.524 -07 000000455 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:18:09.524 -07 000000455 INF: Y Motor: Moving 1356 steps-35
17-03-18 05:18:09.524 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:09.524 -07 000000447 INF: FPGA: Recv ZDACR 29134
17-03-18 05:18:09.534 -07 000000606 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:18:09.534 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:18:09.534 -07 000000606 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:18:09.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:18:09.684 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:18:09.684 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:09.684 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:18:09.684 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:18:09.684 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:09.694 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:18:09.694 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:18:09.694 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:18:09.694 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:18:09.694 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:18:09.694 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:18:09.914 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:18:09.914 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 05:18:09.954 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:09.954 -07 000000382 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:18:09.964 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:09.964 -07 000000455 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:09.964 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:18:09.964 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.847 mm, average velocity = 2.173 mm/sec
17-03-18 05:18:10.134 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.020806,
17-03-18 05:18:10.914 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:10.914 -07 000000424 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:18:10.924 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:10.924 -07 000000455 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:10.944 -07 000000455 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:18:10.944 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:18:10.944 -07 000000455 INF: Y Motor: Moved to 74.0073 after 1450 ms (table move)
17-03-18 05:18:10.944 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133367 mm (DAC = 29134)
17-03-18 05:18:10.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:10.954 -07 000000447 INF: FPGA: Recv ZSGSRD 30050
17-03-18 05:18:10.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:18:10.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:10.954 -07 000000569 INF: FPGA: Recv ZSGSRD 30054
17-03-18 05:18:10.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:10.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:10.964 -07 000000608 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:18:10.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:10.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:10.974 -07 000000512 INF: FPGA: Recv ZSGSRD 30051
17-03-18 05:18:10.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:10.984 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:10.984 -07 000000480 INF: FPGA: Recv ZSGSRD 30043
17-03-18 05:18:10.994 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:10.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:10.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30046
17-03-18 05:18:11.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:11.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:11.004 -07 000000625 INF: FPGA: Recv ZSGSRD 30049
17-03-18 05:18:11.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:11.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:11.014 -07 000000608 INF: FPGA: Recv ZSGSRD 30049
17-03-18 05:18:11.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:11.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:11.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30051
17-03-18 05:18:11.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:11.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:11.034 -07 000000569 INF: FPGA: Recv ZSGSRD 30056
17-03-18 05:18:11.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:11.044 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:11.044 -07 000000502 INF: FPGA: Recv ZPIEZORD 25822
17-03-18 05:18:11.054 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:11.054 -07 000000474 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.3 V.
17-03-18 05:18:11.054 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30050 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30050 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30043 (-132.5 uncal um), Max = 30056 (-132.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:18:11.054 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30050, posNoise = 6, negNoise = 7
17-03-18 05:18:11.054 -07 000000474 INF: Z Motor: After move to -0.133367, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:11.054 -07 000000474 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms
17-03-18 05:18:11.054 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:18:11.104 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:18:11.104 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:18:11.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:11.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:11.104 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:11.104 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:18:11.104 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:11.104 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:11.104 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:11.104 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:18:11.114 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:18:11.114 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:18:11.124 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:18:11.124 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:18:11.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:18:11.174 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:18:11.464 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:18:11.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:18:11.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:18:11.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start.
17-03-18 05:18:11.514 -07 000000461 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:18:11.514 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:18:11.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 05:18:11.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:18:11.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:11.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:18:11.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:18:11.614 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:11.614 -07 000000608 INF: Autofocus start
17-03-18 05:18:11.614 -07 000000608 INF: MeasureProfile start
17-03-18 05:18:11.614 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:11.624 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:18:11.624 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:18:11.624 -07 000000608 INF: MeasureProfile done
17-03-18 05:18:11.624 -07 000000608 INF: X=112  Z correction [um]=0.5148152
17-03-18 05:18:11.624 -07 000000608 INF: Autofocus finished
17-03-18 05:18:11.754 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:18:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:18:11.824 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:18:11.824 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:18:11.824 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133370926871052. ----------
17-03-18 05:18:11.824 -07 000000610 INF: Cycle	135	Tile	18	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:18:11.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27759, sync = True, waitForSettling = True)
17-03-18 05:18:11.834 -07 000000610 INF: Z Motor: Moving to -0.127073 mm, started at -0.133371 mm, distance = 6.30 um
17-03-18 05:18:11.834 -07 000000610 INF: FPGA: Xmit ZDACW 27759\n [Z Motor]
17-03-18 05:18:11.834 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:18:11.844 -07 000000610 INF: FPGA: 'ZDACW 27759' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:18:11.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:11.844 -07 000000455 INF: FPGA: Recv ZDACR 27759
17-03-18 05:18:11.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:11.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:18:12.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.004 -07 000000606 INF: FPGA: Recv ZSGSRD 29072
17-03-18 05:18:12.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:12.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.014 -07 000000382 INF: FPGA: Recv ZSGSRD 29070
17-03-18 05:18:12.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.024 -07 000000512 INF: FPGA: Recv ZSGSRD 29065
17-03-18 05:18:12.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.034 -07 000000626 INF: FPGA: Recv ZSGSRD 29074
17-03-18 05:18:12.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.044 -07 000000569 INF: FPGA: Recv ZSGSRD 29069
17-03-18 05:18:12.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.054 -07 000000502 INF: FPGA: Recv ZSGSRD 29072
17-03-18 05:18:12.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.064 -07 000000501 INF: FPGA: Recv ZSGSRD 29071
17-03-18 05:18:12.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.074 -07 000000579 INF: FPGA: Recv ZSGSRD 29068
17-03-18 05:18:12.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.084 -07 000000581 INF: FPGA: Recv ZSGSRD 29075
17-03-18 05:18:12.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:12.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29066
17-03-18 05:18:12.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:12.104 -07 000000467 INF: FPGA: Recv ZPIEZORD 24491
17-03-18 05:18:12.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:12.114 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.236 V. Piezo Error = -10.0 V.
17-03-18 05:18:12.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29070 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29070 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29065 (-126.3 uncal um), Max = 29075 (-126.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:18:12.114 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29070, posNoise = 5, negNoise = 5
17-03-18 05:18:12.114 -07 000000610 INF: Z Motor: After move to -0.127073, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:12.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:18:12.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:12.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:12.114 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:12.114 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:12.114 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:18:12.114 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:12.114 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:18:12.114 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:18:12.114 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:12.114 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:18:12.114 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:18:12.114 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:18:12.124 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:18:12.124 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:18:12.124 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:18:12.124 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:18:12.134 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:18:12.134 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:18:12.134 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:18:12.134 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:18:12.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 27936 150\n [Camera]
17-03-18 05:18:12.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:18:12.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:18:12.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:18:12.774 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:12.774 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:12.774 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:18:12.774 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:18:12.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:18:12.774 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:12.774 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:12.774 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:18:12.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27936 820
17-03-18 05:18:13.114 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:18:13.154 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 05:18:13.154 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:18:13.154 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:13.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:18:13.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:18:13.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:13.164 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:13.164 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:18:13.164 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:13.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:18:13.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-18 05:18:13.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-18 05:18:13.324 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:13.324 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:13.324 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:18:13.324 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-18 05:18:13.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-18 05:18:13.324 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:13.324 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:13.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:18:13.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-18 05:18:13.514 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:18:13.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 27936 150' command took 2 ms to send, 1374 ms to get response, and 1381 ms overall
17-03-18 05:18:13.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:18:13.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.127075198972126. ------
17-03-18 05:18:13.524 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13348 mm
17-03-18 05:18:13.524 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:18:13.524 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:13.524 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:18:13.524 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:18:13.524 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29159, sync = True, waitForSettling = False)
17-03-18 05:18:13.524 -07 000000579 INF: Z Motor: Moving to -0.133481 mm, started at -0.127075 mm, distance = -6.41 um
17-03-18 05:18:13.524 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:13.534 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:18:13.534 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:13.534 -07 000000447 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:18:13.544 -07 000000579 INF: FPGA: Xmit ZDACW 29159\n [Z Motor]
17-03-18 05:18:13.544 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:18:13.544 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:13.544 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:18:13.544 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:18:13.544 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:18:13.554 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:18:13.554 -07 000000579 INF: FPGA: 'ZDACW 29159' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:18:13.564 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:18:13.574 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:13.574 -07 000000606 INF: FPGA: Recv ZDACR 29159
17-03-18 05:18:13.584 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:18:13.584 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:18:13.704 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:18:13.704 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:18:13.704 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:13.704 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:18:13.704 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:18:13.704 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:13.704 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:13.714 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:18:13.714 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:18:13.714 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:18:13.754 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:18:13.754 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:18:13.944 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:18:13.944 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-18 05:18:13.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:13.974 -07 000000581 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:18:13.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:18:13.984 -07 000000626 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:13.984 -07 000000626 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:18:13.984 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:18:14.934 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:18:14.934 -07 000000569 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:18:14.944 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:14.944 -07 000000626 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:18:14.974 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:18:14.974 -07 000000626 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:18:14.974 -07 000000626 INF: Y Motor: Moved to 74.8311 after 1448 ms (table move)
17-03-18 05:18:14.974 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133481 mm (DAC = 29159)
17-03-18 05:18:14.994 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:14.994 -07 000000461 INF: FPGA: Recv ZSGSRD 30077
17-03-18 05:18:15.004 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:18:15.004 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.004 -07 000000424 INF: FPGA: Recv ZSGSRD 30072
17-03-18 05:18:15.014 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.014 -07 000000618 INF: FPGA: Recv ZSGSRD 30070
17-03-18 05:18:15.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.024 -07 000000569 INF: FPGA: Recv ZSGSRD 30065
17-03-18 05:18:15.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.034 -07 000000455 INF: FPGA: Recv ZSGSRD 30063
17-03-18 05:18:15.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.044 -07 000000502 INF: FPGA: Recv ZSGSRD 30070
17-03-18 05:18:15.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.054 -07 000000625 INF: FPGA: Recv ZSGSRD 30063
17-03-18 05:18:15.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.064 -07 000000467 INF: FPGA: Recv ZSGSRD 30066
17-03-18 05:18:15.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.074 -07 000000382 INF: FPGA: Recv ZSGSRD 30075
17-03-18 05:18:15.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:15.084 -07 000000474 INF: FPGA: Recv ZSGSRD 30069
17-03-18 05:18:15.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.094 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:15.094 -07 000000618 INF: FPGA: Recv ZPIEZORD 25851
17-03-18 05:18:15.104 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.104 -07 000000501 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.449 V. Piezo Error = -9.3 V.
17-03-18 05:18:15.104 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30069 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30063 (-132.7 uncal um), Max = 30077 (-132.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:18:15.104 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30069, posNoise = 8, negNoise = 6
17-03-18 05:18:15.104 -07 000000501 INF: Z Motor: After move to -0.133481, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:15.104 -07 000000501 INF: Z Motor: Settle wait time = 1452 ms, measure time = 123 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:18:15.104 -07 000000501 INF: Z Motor: Waiting extra 27 ms after reading position to reach expected total of 150 ms
17-03-18 05:18:15.134 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 05:18:15.134 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:18:15.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:15.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:15.134 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:15.134 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:15.134 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:18:15.134 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:15.134 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:18:15.134 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:18:15.144 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:18:15.144 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:18:15.144 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:18:15.154 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:18:15.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:18:15.194 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:18:15.494 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.008536,
17-03-18 05:18:15.494 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:18:15.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:18:15.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:18:15.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:18:15.534 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:18:15.534 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:18:15.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:18:15.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:18:15.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:15.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:18:15.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:18:15.634 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:18:15.634 -07 000000626 INF: Autofocus start
17-03-18 05:18:15.634 -07 000000626 INF: MeasureProfile start
17-03-18 05:18:15.634 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:18:15.644 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:18:15.644 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:18:15.644 -07 000000626 INF: MeasureProfile done
17-03-18 05:18:15.644 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:18:15.644 -07 000000626 INF: Autofocus finished
17-03-18 05:18:15.844 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:18:15.844 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:18:15.844 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133492986901745. ----------
17-03-18 05:18:15.854 -07 000000610 INF: Cycle	135	Tile	19	Exposure Settings		A	435	G	209	T	209	C	435
17-03-18 05:18:15.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27683, sync = True, waitForSettling = True)
17-03-18 05:18:15.854 -07 000000610 INF: Z Motor: Moving to -0.126725 mm, started at -0.133493 mm, distance = 6.77 um
17-03-18 05:18:15.854 -07 000000610 INF: FPGA: Xmit ZDACW 27683\n [Z Motor]
17-03-18 05:18:15.854 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:18:15.864 -07 000000610 INF: FPGA: 'ZDACW 27683' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:18:15.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:18:15.864 -07 000000502 INF: FPGA: Recv ZDACR 27683
17-03-18 05:18:15.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:15.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:18:16.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.024 -07 000000579 INF: FPGA: Recv ZSGSRD 29017
17-03-18 05:18:16.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:18:16.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.034 -07 000000501 INF: FPGA: Recv ZSGSRD 29021
17-03-18 05:18:16.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:18:16.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.044 -07 000000581 INF: FPGA: Recv ZSGSRD 29025
17-03-18 05:18:16.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.054 -07 000000626 INF: FPGA: Recv ZSGSRD 29017
17-03-18 05:18:16.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29010
17-03-18 05:18:16.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.074 -07 000000581 INF: FPGA: Recv ZSGSRD 29021
17-03-18 05:18:16.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29018
17-03-18 05:18:16.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.094 -07 000000502 INF: FPGA: Recv ZSGSRD 29017
17-03-18 05:18:16.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.104 -07 000000625 INF: FPGA: Recv ZSGSRD 29010
17-03-18 05:18:16.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:18:16.114 -07 000000569 INF: FPGA: Recv ZSGSRD 29011
17-03-18 05:18:16.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:18:16.124 -07 000000581 INF: FPGA: Recv ZPIEZORD 24474
17-03-18 05:18:16.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:18:16.134 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.224 V. Piezo Error = -10.0 V.
17-03-18 05:18:16.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29017 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29017 (-126.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29010 (-125.9 uncal um), Max = 29025 (-126.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:18:16.134 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29017, posNoise = 8, negNoise = 7
17-03-18 05:18:16.134 -07 000000610 INF: Z Motor: After move to -0.126725, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:18:16.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:18:16.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:18:16.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:18:16.134 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:18:16.134 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:18:16.134 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:18:16.134 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:18:16.134 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:18:16.134 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:18:16.134 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:18:16.134 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:18:16.134 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:18:16.134 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:18:16.144 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:18:16.144 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:18:16.144 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:18:16.144 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:18:16.154 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:18:16.154 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:18:16.154 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:18:16.154 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:18:16.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 435 435 209 209 27860 150\n [Camera]
17-03-18 05:18:16.354 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:18:16.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:18:16.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 134. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval.
17-03-18 05:18:16.794 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-18 05:18:16.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-18 05:18:16.794 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:16.794 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:16.794 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2151893096, 0x0, 391868352) start.
17-03-18 05:18:16.794 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-18 05:18:16.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-18 05:18:16.794 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:16.924 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:16.924 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:18:16.984 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27860 820
17-03-18 05:18:17.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-18 05:18:17.174 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2151893096, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:18:17.174 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:18:17.174 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:17.174 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:18:17.184 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:18:17.294 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:18:17.294 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:18:17.294 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:17.294 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:18:17.304 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 05:18:17.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1181
17-03-18 05:18:17.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1181
17-03-18 05:18:17.344 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:18:17.344 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1181
17-03-18 05:18:17.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1181
17-03-18 05:18:17.344 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:18:17.354 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:18:17.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:18:17.354 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:18:17.354 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:18:17.534 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-18 05:18:17.534 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:18:17.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 435 435 209 209 27860 150' command took 2 ms to send, 1374 ms to get response, and 1378 ms overall
17-03-18 05:18:17.754 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:18:17.754 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:18:17.754 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:17.754 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:18:17.754 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:18:17.754 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:18:17.764 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:18:17.764 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:18:17.764 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:18:17.764 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:18:17.764 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 05:18:17.804 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:18:17.804 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:18:17.844 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:18:17.864 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-18 05:18:17.864 -07 000000610 INF: Imaging Cycle 135: ScanTilesCommand Cycle 135 time end. Duration was 144093 ms.
17-03-18 05:18:17.864 -07 000000610 INF: =================== Cycle #135 ===================
17-03-18 05:18:17.864 -07 000000610 INF: ===================  ===================
17-03-18 05:18:17.864 -07 000000474 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:18:17.864 -07 000000608 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 05:18:17.874 -07 000000474 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:18:17.874 -07 000000474 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 05:18:17.874 -07 000000474 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 135, FrontChillerTemperature: 4.008536, FrontChillerHeatSinkTemperature: 0.183037, AmbientTemperature: 18.75098, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.72292, GreenLEDSensorTemperature: 26.4567, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 05:18:17.984 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.