17-03-18 05:18:18.034 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:18:18.034 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True) 17-03-18 05:18:18.034 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm 17-03-18 05:18:18.034 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:18:18.044 -07 000000424 INF: FPGA: Recv YRDPOS 153255 17-03-18 05:18:18.044 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall 17-03-18 05:18:18.044 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:18:18.054 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False 17-03-18 05:18:18.054 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts 17-03-18 05:18:18.054 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor] 17-03-18 05:18:18.164 -07 000000569 INF: FPGA: Recv YMVTO 154378 872 17-03-18 05:18:18.164 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall 17-03-18 05:18:18.164 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm) 17-03-18 05:18:18.164 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%). 17-03-18 05:18:18.164 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec 17-03-18 05:18:20.854 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.98264, 17-03-18 05:18:21.164 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:18:21.164 -07 000000625 INF: FPGA: Recv YRDPOS 154378 17-03-18 05:18:21.174 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:18:21.174 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:18:21.194 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:18:21.194 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:18:21.194 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3159 ms 17-03-18 05:18:21.204 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 60° =================== 17-03-18 05:18:21.204 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 60°, FC temperature to 60° =================== 17-03-18 05:18:21.204 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl] 17-03-18 05:18:21.204 -07 000000625 INF: FPGA: Recv TEC2TEMP 17-03-18 05:18:21.214 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:18:21.214 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 05:18:21.214 -07 000000501 INF: FPGA: Recv TEC2EN 17-03-18 05:18:21.224 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:18:21.224 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 60° =================== 17-03-18 05:18:21.224 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:18:21.244 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 05:18:21.244 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:21.264 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-18 05:18:21.264 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions. 17-03-18 05:18:21.264 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 05:18:21.564 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:18:21.584 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-18 05:18:21.584 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-18 05:18:21.634 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:21.654 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:18:21.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:18:21.754 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:18:21.754 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-18 05:18:21.754 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:21.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:21.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:21.784 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 05:18:21.784 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 05:18:21.784 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:18:21.914 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-18 05:18:21.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:25.084 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:25.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:25.534 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:25.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:25.984 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:26.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:26.014 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-18 05:18:26.014 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:18:26.144 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:26.174 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 05:18:26.174 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 05:18:26.214 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.983999, 17-03-18 05:18:26.304 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:26.334 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 05:18:26.334 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 05:18:26.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:18:26.464 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:18:26.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:26.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:26.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:26.924 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:26.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:26.954 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 05:18:26.954 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:18:28.174 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-18 05:18:28.174 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start 17-03-18 05:18:28.174 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:28.194 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:18:28.194 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions. 17-03-18 05:18:28.194 -07 000000610 INF: ReagentValve: Xmit +04\r 17-03-18 05:18:28.324 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:18:28.344 -07 000000610 INF: ReagentValve: Recv 00CD\r 17-03-18 05:18:28.344 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%) 17-03-18 05:18:28.394 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:28.414 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-18 05:18:28.414 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:18:28.514 -07 000000610 INF: =================== Cycle #136, Pumping Reagent CMS (4) =================== 17-03-18 05:18:28.514 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 05:18:28.514 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:28.544 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 05:18:28.544 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 05:18:28.544 -07 000000610 INF: =================== Cycle #136, Pumping Reagent CMS (4), Aspirating port InputPort =================== 17-03-18 05:18:28.674 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 05:18:28.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:30.154 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:30.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:30.604 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:30.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:30.634 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 05:18:30.634 -07 000000610 INF: =================== Cycle #136, Pumping Reagent CMS (4) =================== 17-03-18 05:18:30.764 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:30.794 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 05:18:30.794 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 05:18:30.924 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:30.954 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 05:18:30.954 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 05:18:30.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:18:31.084 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:18:31.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:31.544 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:31.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:31.574 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 05:18:31.574 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:18:31.574 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.971733, 17-03-18 05:18:31.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:31.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:32.794 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-18 05:18:32.794 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 05:18:32.794 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:32.814 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-18 05:18:32.814 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions. 17-03-18 05:18:32.814 -07 000000610 INF: ReagentValve: Xmit -03\r 17-03-18 05:18:32.964 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:18:32.984 -07 000000610 INF: ReagentValve: Recv 00E1\r 17-03-18 05:18:32.984 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%) 17-03-18 05:18:33.034 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:33.054 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:18:33.054 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:18:33.154 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:18:33.154 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 05:18:33.154 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:33.184 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 05:18:33.184 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 05:18:33.184 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:18:33.314 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 05:18:33.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:34.224 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:34.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:34.254 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 05:18:34.254 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:18:34.384 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:34.414 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 05:18:34.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 05:18:34.544 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:34.574 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 05:18:34.574 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 05:18:34.574 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:18:34.704 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:18:34.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:35.164 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:35.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:35.194 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 05:18:35.194 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:18:35.194 -07 000000512 INF: WaitCommand(10000) start 17-03-18 05:18:35.194 -07 000000447 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 05:18:35.194 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 05:18:36.414 -07 000000447 INF: AsyncDelayTimer waited 1216ms 17-03-18 05:18:36.414 -07 000000447 INF: LanePump: Xmit /1?\r 17-03-18 05:18:36.444 -07 000000447 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 05:18:36.444 -07 000000447 INF: LanePump: Current Position of Pump is: 1110 17-03-18 05:18:36.574 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 05:18:36.614 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:36.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:36.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:36.934 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.001704, 17-03-18 05:18:38.144 -07 000000447 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:38.174 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:38.594 -07 000000447 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:38.624 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:38.624 -07 000000447 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-18 05:18:38.624 -07 000000447 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 05:18:38.624 -07 000000447 INF: =================== =================== 17-03-18 05:18:41.754 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:42.294 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.997626, 17-03-18 05:18:45.204 -07 000000512 INF: WaitCommand(10000) end 17-03-18 05:18:45.204 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:18:45.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1 17-03-18 05:18:45.204 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:45.234 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 05:18:45.234 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 05:18:45.234 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:18:45.364 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r 17-03-18 05:18:45.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:46.754 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:47.654 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.02213, 17-03-18 05:18:51.534 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:51.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:51.754 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:51.984 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:52.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:52.434 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:52.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:52.884 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:52.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:53.014 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.993549, 17-03-18 05:18:53.334 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:53.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:53.364 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete 17-03-18 05:18:53.364 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:18:53.494 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:53.524 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 05:18:53.524 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 05:18:53.654 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:53.684 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 05:18:53.684 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 05:18:53.684 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:18:53.814 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:18:53.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:54.274 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:54.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:54.304 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 05:18:54.304 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:18:55.524 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 05:18:55.524 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start 17-03-18 05:18:55.524 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:55.544 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:18:55.544 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions. 17-03-18 05:18:55.544 -07 000000610 INF: ReagentValve: Xmit -01\r 17-03-18 05:18:55.754 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:18:55.774 -07 000000610 INF: ReagentValve: Recv 0198\r 17-03-18 05:18:55.774 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%) 17-03-18 05:18:55.824 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:18:55.844 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-18 05:18:55.844 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:18:55.944 -07 000000610 INF: =================== Cycle #136, Pumping Reagent IMT (1) =================== 17-03-18 05:18:55.944 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 05:18:55.944 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:55.974 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 05:18:55.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 05:18:55.974 -07 000000610 INF: =================== Cycle #136, Pumping Reagent IMT (1), Aspirating port InputPort =================== 17-03-18 05:18:56.104 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 05:18:56.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:56.754 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:18:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1848, R2=1917, Total=3765. Warn if over 250 bubbles per interval. 17-03-18 05:18:57.584 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:57.614 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:18:58.034 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:58.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:58.064 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 05:18:58.064 -07 000000610 INF: =================== Cycle #136, Pumping Reagent IMT (1) =================== 17-03-18 05:18:58.194 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:58.224 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 05:18:58.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 05:18:58.354 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:18:58.374 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.981281, 17-03-18 05:18:58.384 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 05:18:58.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 05:18:58.384 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:18:58.514 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:18:58.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:58.974 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:18:59.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:18:59.004 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 05:18:59.004 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:19:00.224 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 05:19:00.224 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 05:19:00.224 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:19:00.244 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-18 05:19:00.244 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions. 17-03-18 05:19:00.244 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 05:19:00.474 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:19:00.494 -07 000000610 INF: ReagentValve: Recv 01AC\r 17-03-18 05:19:00.494 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%) 17-03-18 05:19:00.544 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:19:00.564 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:19:00.564 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:19:00.664 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:19:00.664 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 05:19:00.664 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:19:00.694 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 05:19:00.694 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 05:19:00.694 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:19:00.824 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 05:19:00.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:19:01.734 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:19:01.754 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-18 05:19:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:01.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:01.764 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 05:19:01.764 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:19:01.894 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:19:01.924 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 05:19:01.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 05:19:02.054 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:19:02.084 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 05:19:02.084 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 05:19:02.084 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:19:02.214 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:19:02.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:02.674 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:19:02.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:02.704 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 05:19:02.704 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:19:02.704 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 65° =================== 17-03-18 05:19:02.704 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 65°, FC temperature to 65° =================== 17-03-18 05:19:02.704 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl] 17-03-18 05:19:02.704 -07 000000474 INF: FPGA: Recv TEC2TEMP 17-03-18 05:19:02.714 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:19:02.714 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 05:19:02.714 -07 000000424 INF: FPGA: Recv TEC2EN 17-03-18 05:19:02.724 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:19:02.724 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 65° =================== 17-03-18 05:19:02.724 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:19:02.724 -07 000000610 INF: WaitCommand(30000) start 17-03-18 05:19:03.734 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.958108, 17-03-18 05:19:06.754 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:06.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:09.094 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.99219, 17-03-18 05:19:11.754 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:14.454 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.98264, 17-03-18 05:19:16.754 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:16.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:19.814 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.978563, 17-03-18 05:19:21.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:21.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:25.174 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.996267, 17-03-18 05:19:26.754 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:26.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:30.534 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.009895, 17-03-18 05:19:31.754 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:31.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:32.734 -07 000000610 INF: WaitCommand(30000) end 17-03-18 05:19:32.734 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:19:32.734 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1 17-03-18 05:19:32.834 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:19:32.864 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 05:19:32.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 05:19:32.864 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:19:32.994 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r 17-03-18 05:19:33.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:19:33.574 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:19:33.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:33.604 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete 17-03-18 05:19:33.604 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:19:33.734 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:19:33.764 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 05:19:33.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-18 05:19:33.894 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:19:33.924 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 05:19:33.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-18 05:19:33.924 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:19:34.054 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:19:34.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:34.514 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:19:34.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:34.544 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 05:19:34.544 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:19:34.544 -07 000000581 INF: WaitCommand(30000) start 17-03-18 05:19:34.544 -07 000000608 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 05:19:34.544 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 05:19:35.764 -07 000000608 INF: AsyncDelayTimer waited 1216ms 17-03-18 05:19:35.764 -07 000000608 INF: LanePump: Xmit /1?\r 17-03-18 05:19:35.794 -07 000000608 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 05:19:35.794 -07 000000608 INF: LanePump: Current Position of Pump is: 1920 17-03-18 05:19:35.894 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.996267, 17-03-18 05:19:35.924 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 05:19:35.964 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:19:36.754 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:36.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:38.304 -07 000000608 INF: LanePump: Xmit /1Q\r 17-03-18 05:19:38.334 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:19:38.754 -07 000000608 INF: LanePump: Xmit /1Q\r 17-03-18 05:19:38.784 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:19:38.784 -07 000000608 INF: LanePump: Waited 2819 ms for pump motion to complete 17-03-18 05:19:38.784 -07 000000608 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 05:19:38.784 -07 000000608 INF: =================== =================== 17-03-18 05:19:41.254 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.954032, 17-03-18 05:19:41.754 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:46.614 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.960826, 17-03-18 05:19:46.754 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:51.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:51.974 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.970374, 17-03-18 05:19:56.754 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:19:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:19:57.334 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.012614, 17-03-18 05:20:01.754 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:20:02.694 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.037119, 17-03-18 05:20:04.554 -07 000000581 INF: WaitCommand(30000) end 17-03-18 05:20:04.554 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 22° =================== 17-03-18 05:20:04.554 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 22°, FC temperature to 22° =================== 17-03-18 05:20:04.554 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl] 17-03-18 05:20:04.554 -07 000000512 INF: FPGA: Recv TEC2TEMP 17-03-18 05:20:04.564 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:04.564 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 05:20:04.564 -07 000000447 INF: FPGA: Recv TEC2EN 17-03-18 05:20:04.574 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:04.574 -07 000000610 INF: =================== Cycle #136, Flow Cell Temp 22° =================== 17-03-18 05:20:04.574 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:20:04.574 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:20:04.574 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-18 05:20:04.574 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:04.614 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 05:20:04.614 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 05:20:04.614 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:20:04.744 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-18 05:20:04.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:06.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:06.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1849, R2=1918, Total=3767. Warn if over 250 bubbles per interval. 17-03-18 05:20:07.914 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:07.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:08.054 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.02213, 17-03-18 05:20:08.364 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:08.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:08.814 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:08.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:08.844 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-18 05:20:08.844 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:20:08.974 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:09.004 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 05:20:09.004 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 05:20:09.134 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:09.164 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 05:20:09.164 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 05:20:09.164 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:20:09.294 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:20:09.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:09.754 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:09.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:09.784 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 05:20:09.784 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:20:11.004 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-18 05:20:11.004 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start 17-03-18 05:20:11.004 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:20:11.024 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:20:11.024 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions. 17-03-18 05:20:11.024 -07 000000610 INF: ReagentValve: Xmit -02\r 17-03-18 05:20:11.174 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:20:11.194 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-18 05:20:11.194 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-18 05:20:11.244 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:20:11.264 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-18 05:20:11.264 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:20:11.364 -07 000000610 INF: =================== Cycle #136, Pumping Reagent USM (2) =================== 17-03-18 05:20:11.364 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 05:20:11.364 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:11.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 05:20:11.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 05:20:11.394 -07 000000610 INF: =================== Cycle #136, Pumping Reagent USM (2), Aspirating port InputPort =================== 17-03-18 05:20:11.524 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 05:20:11.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:11.754 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-18 05:20:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:13.004 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:13.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:13.414 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.000345, 17-03-18 05:20:13.454 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:13.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:13.484 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 05:20:13.484 -07 000000610 INF: =================== Cycle #136, Pumping Reagent USM (2) =================== 17-03-18 05:20:13.614 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:13.644 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 05:20:13.644 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 05:20:13.774 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:13.804 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 05:20:13.804 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 05:20:13.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:20:13.934 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:20:13.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:14.394 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:14.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:14.424 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 05:20:14.424 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:20:15.644 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 05:20:15.644 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 05:20:15.644 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:20:15.664 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-18 05:20:15.664 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions. 17-03-18 05:20:15.664 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 05:20:15.814 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:20:15.834 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-18 05:20:15.834 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-18 05:20:15.884 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:20:15.904 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:20:15.904 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 05:20:16.004 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:20:16.004 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 05:20:16.004 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:16.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 05:20:16.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 05:20:16.034 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 05:20:16.164 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 05:20:16.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:16.754 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:16.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:17.074 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:17.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:17.104 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 05:20:17.104 -07 000000610 INF: =================== Cycle #136, Pumping Reagent PR2 (3) =================== 17-03-18 05:20:17.234 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:17.264 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 05:20:17.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 05:20:17.394 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 05:20:17.424 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 05:20:17.424 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 05:20:17.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 05:20:17.554 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 05:20:17.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:18.014 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:18.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:18.044 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 05:20:18.044 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:20:18.044 -07 000000608 INF: WaitCommand(10000) start 17-03-18 05:20:18.044 -07 000000474 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 05:20:18.044 -07 000000474 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 05:20:18.774 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.99219, 17-03-18 05:20:19.264 -07 000000474 INF: AsyncDelayTimer waited 1215ms 17-03-18 05:20:19.264 -07 000000474 INF: LanePump: Xmit /1?\r 17-03-18 05:20:19.294 -07 000000474 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 05:20:19.294 -07 000000474 INF: LanePump: Current Position of Pump is: 1110 17-03-18 05:20:19.424 -07 000000474 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 05:20:19.464 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:20.994 -07 000000474 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:21.024 -07 000000474 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 05:20:21.444 -07 000000474 INF: LanePump: Xmit /1Q\r 17-03-18 05:20:21.474 -07 000000474 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 05:20:21.474 -07 000000474 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-18 05:20:21.474 -07 000000474 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 05:20:21.474 -07 000000474 INF: =================== =================== 17-03-18 05:20:21.754 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:21.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:24.134 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.023489, 17-03-18 05:20:26.754 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:26.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:28.054 -07 000000608 INF: WaitCommand(10000) end 17-03-18 05:20:28.054 -07 000000610 INF: =================== Cycle #136, Imaging =================== 17-03-18 05:20:28.054 -07 000000610 INF: Imaging Cycle 136: ScanTilesCommand Cycle 136 time start. 17-03-18 05:20:28.054 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand 17-03-18 05:20:28.054 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:20:28.084 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 05:20:28.084 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions. 17-03-18 05:20:28.084 -07 000000610 INF: ReagentValve: Xmit -18\r 17-03-18 05:20:28.384 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 05:20:28.404 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-18 05:20:28.404 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-18 05:20:28.454 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 05:20:28.474 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-18 05:20:28.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:28.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:28.474 -07 000000455 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start. 17-03-18 05:20:28.474 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:28.474 -07 000000455 INF: FPGA: Xmit EXLED1ON\n [RedLED] 17-03-18 05:20:28.474 -07 000000579 INF: FPGA: Recv EXLED1ON 17-03-18 05:20:28.484 -07 000000455 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:20:28.484 -07 000000455 INF: FPGA: Xmit EXLED1ADCR\n [RedLED] 17-03-18 05:20:28.484 -07 000000502 INF: FPGA: Recv EXLED1ADCR 23068 17-03-18 05:20:28.494 -07 000000455 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:28.494 -07 000000455 INF: RedLED: Using Red data: Photodiode ADC 23068 --> 7.4 mW (old method), or 204.5 mW (new method). Difference = 197.1 mW 17-03-18 05:20:28.494 -07 000000455 INF: FPGA: Xmit EXLED1OFF\n [RedLED] 17-03-18 05:20:28.494 -07 000000569 INF: FPGA: Recv EXLED1OFF 17-03-18 05:20:28.504 -07 000000455 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:28.504 -07 000000455 INF: RedLED: LED was on for 20 ms 17-03-18 05:20:28.504 -07 000000455 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms. 17-03-18 05:20:28.504 -07 000000455 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start. 17-03-18 05:20:28.504 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:28.504 -07 000000455 INF: FPGA: Xmit EXLED2ON\n [GreenLED] 17-03-18 05:20:28.504 -07 000000579 INF: FPGA: Recv EXLED2ON 17-03-18 05:20:28.514 -07 000000455 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:20:28.514 -07 000000455 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-18 05:20:28.514 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2097 17-03-18 05:20:28.524 -07 000000455 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:28.524 -07 000000455 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW 17-03-18 05:20:28.524 -07 000000455 INF: FPGA: Xmit EXLED2OFF\n [GreenLED] 17-03-18 05:20:28.524 -07 000000447 INF: FPGA: Recv EXLED2OFF 17-03-18 05:20:28.534 -07 000000455 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:28.534 -07 000000455 INF: GreenLED: LED was on for 19 ms 17-03-18 05:20:28.534 -07 000000455 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 29 ms. 17-03-18 05:20:28.534 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-18 05:20:28.534 -07 000000479 INF: FPGA: Recv EMCUR 17-03-18 05:20:28.544 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:20:28.544 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator] 17-03-18 05:20:29.044 -07 000000569 INF: FPGA: Recv EMOUT 17-03-18 05:20:29.044 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-18 05:20:29.044 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator] 17-03-18 05:20:29.044 -07 000000467 INF: FPGA: Recv EMCUR 17-03-18 05:20:29.054 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:29.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:29.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126734715728613. ------ 17-03-18 05:20:29.054 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:29.054 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17841 mm 17-03-18 05:20:29.054 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:29.054 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:29.054 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-18 05:20:29.054 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38973, sync = True, waitForSettling = False) 17-03-18 05:20:29.064 -07 000000579 INF: Z Motor: Moving to -0.178407 mm, started at -0.126735 mm, distance = -51.67 um 17-03-18 05:20:29.064 -07 000000579 INF: FPGA: Xmit ZDACW 38973\n [Z Motor] 17-03-18 05:20:29.064 -07 000000474 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm 17-03-18 05:20:29.064 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:29.064 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 05:20:29.074 -07 000000579 INF: FPGA: 'ZDACW 38973' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:29.074 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:29.084 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:29.084 -07 000000581 INF: FPGA: Recv YRDPOS 154378 17-03-18 05:20:29.094 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:20:29.094 -07 000000474 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:29.094 -07 000000474 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False 17-03-18 05:20:29.094 -07 000000474 INF: Y Motor: Moving to 122701 encoder counts 17-03-18 05:20:29.094 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:29.094 -07 000000382 INF: FPGA: Recv ZDACR 38973 17-03-18 05:20:29.104 -07 000000579 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:20:29.104 -07 000000579 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-18 05:20:29.104 -07 000000474 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-18 05:20:29.274 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:29.274 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall 17-03-18 05:20:29.494 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.050752, 17-03-18 05:20:30.784 -07 000000467 INF: FPGA: Recv YMVTO 122701 24777 17-03-18 05:20:30.784 -07 000000474 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1698 ms overall 17-03-18 05:20:30.784 -07 000000474 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm) 17-03-18 05:20:30.784 -07 000000474 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%). 17-03-18 05:20:30.794 -07 000000474 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1698 ms, distance = 15.467 mm, average velocity = 9.109 mm/sec 17-03-18 05:20:31.754 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:31.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:33.644 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:33.644 -07 000000382 INF: FPGA: Recv YRDPOS 122694 17-03-18 05:20:33.654 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:33.654 -07 000000474 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:33.684 -07 000000474 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:33.684 -07 000000474 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm) 17-03-18 05:20:33.684 -07 000000474 INF: Y Motor: Moved to 59.9092 after 4622 ms 17-03-18 05:20:33.684 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178407 mm (DAC = 38973) 17-03-18 05:20:33.684 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.684 -07 000000626 INF: FPGA: Recv ZSGSRD 37065 17-03-18 05:20:33.694 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:33.694 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.694 -07 000000455 INF: FPGA: Recv ZSGSRD 37058 17-03-18 05:20:33.704 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.704 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.704 -07 000000618 INF: FPGA: Recv ZSGSRD 37060 17-03-18 05:20:33.714 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.714 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.714 -07 000000569 INF: FPGA: Recv ZSGSRD 37051 17-03-18 05:20:33.724 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.724 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.724 -07 000000479 INF: FPGA: Recv ZSGSRD 37063 17-03-18 05:20:33.734 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.734 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.734 -07 000000502 INF: FPGA: Recv ZSGSRD 37060 17-03-18 05:20:33.744 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.744 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.744 -07 000000424 INF: FPGA: Recv ZSGSRD 37059 17-03-18 05:20:33.754 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.754 -07 000000474 INF: FPGA: Recv ZSGSRD 37057 17-03-18 05:20:33.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.764 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.764 -07 000000606 INF: FPGA: Recv ZSGSRD 37057 17-03-18 05:20:33.774 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.774 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:33.774 -07 000000569 INF: FPGA: Recv ZSGSRD 37060 17-03-18 05:20:33.784 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.784 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:33.784 -07 000000447 INF: FPGA: Recv ZPIEZORD 33257 17-03-18 05:20:33.794 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:33.794 -07 000000461 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V. 17-03-18 05:20:33.794 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37059 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37060 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37051 (-177.5 uncal um), Max = 37065 (-177.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:20:33.794 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37059, posNoise = 6, negNoise = 8 17-03-18 05:20:33.794 -07 000000461 INF: Z Motor: After move to -0.178407, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:33.794 -07 000000461 INF: Z Motor: Settle wait time = 4625 ms, measure time = 106 ms (allowed 150 ms), total time = 4731 ms 17-03-18 05:20:33.794 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:33.844 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4784 ms 17-03-18 05:20:33.844 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:33.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:33.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:33.844 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:33.844 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:33.844 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:33.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:33.844 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:33.844 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-18 05:20:33.864 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms. 17-03-18 05:20:33.864 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:33.874 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-18 05:20:33.874 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:33.884 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 05:20:33.884 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms. 17-03-18 05:20:33.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:33.934 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:34.234 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:34.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:34.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:34.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) start. 17-03-18 05:20:34.274 -07 000000447 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:34.274 -07 000000606 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:34.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall 17-03-18 05:20:34.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576492352, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 05:20:34.364 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:34.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:20:34.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 05:20:34.374 -07 000000501 INF: Image SNR check: start 17-03-18 05:20:34.374 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:34.374 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:34.384 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:34.384 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:34.384 -07 000000501 INF: Image SNR check: pass [peak (Max-Min)=130.71] 17-03-18 05:20:34.384 -07 000000501 INF: Autofocus start 17-03-18 05:20:34.384 -07 000000501 INF: MeasureProfile start 17-03-18 05:20:34.394 -07 000000501 INF: MeasureProfile done 17-03-18 05:20:34.394 -07 000000501 INF: X=32 Z correction [um]=0.09220707 17-03-18 05:20:34.394 -07 000000501 INF: Autofocus finished 17-03-18 05:20:34.584 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:34.584 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall 17-03-18 05:20:34.584 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178398229772654. ---------- 17-03-18 05:20:34.714 -07 000000610 INF: Cycle 136 Tile 1 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:34.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37506, sync = True, waitForSettling = True) 17-03-18 05:20:34.714 -07 000000610 INF: Z Motor: Moving to -0.171691 mm, started at -0.178398 mm, distance = 6.71 um 17-03-18 05:20:34.714 -07 000000610 INF: FPGA: Xmit ZDACW 37506\n [Z Motor] 17-03-18 05:20:34.714 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:20:34.724 -07 000000610 INF: FPGA: 'ZDACW 37506' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:34.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:34.724 -07 000000455 INF: FPGA: Recv ZDACR 37506 17-03-18 05:20:34.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:34.854 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.02213, 17-03-18 05:20:34.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.884 -07 000000608 INF: FPGA: Recv ZSGSRD 36020 17-03-18 05:20:34.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:34.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.894 -07 000000424 INF: FPGA: Recv ZSGSRD 36015 17-03-18 05:20:34.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.914 -07 000000569 INF: FPGA: Recv ZSGSRD 36018 17-03-18 05:20:34.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:20:34.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.924 -07 000000424 INF: FPGA: Recv ZSGSRD 36010 17-03-18 05:20:34.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.934 -07 000000479 INF: FPGA: Recv ZSGSRD 36017 17-03-18 05:20:34.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.944 -07 000000480 INF: FPGA: Recv ZSGSRD 36016 17-03-18 05:20:34.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.954 -07 000000618 INF: FPGA: Recv ZSGSRD 36021 17-03-18 05:20:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.964 -07 000000569 INF: FPGA: Recv ZSGSRD 36021 17-03-18 05:20:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.974 -07 000000501 INF: FPGA: Recv ZSGSRD 36011 17-03-18 05:20:34.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:34.984 -07 000000512 INF: FPGA: Recv ZSGSRD 36021 17-03-18 05:20:34.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:34.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:34.994 -07 000000626 INF: FPGA: Recv ZPIEZORD 31884 17-03-18 05:20:35.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:35.004 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.1 V. 17-03-18 05:20:35.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36017 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36010 (-170.8 uncal um), Max = 36021 (-170.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:20:35.004 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36017, posNoise = 4, negNoise = 7 17-03-18 05:20:35.004 -07 000000610 INF: Z Motor: After move to -0.171691, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:35.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms) 17-03-18 05:20:35.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:35.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:35.004 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:35.004 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:35.004 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:35.004 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:35.004 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:35.004 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:35.004 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:20:35.004 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-18 05:20:35.004 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:35.004 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:35.014 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:35.014 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:35.024 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 05:20:35.024 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 05:20:35.034 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms. 17-03-18 05:20:35.034 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:35.034 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:20:35.034 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:35.044 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-18 05:20:35.044 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms. 17-03-18 05:20:35.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37683 150\n [Camera] 17-03-18 05:20:35.254 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:35.694 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632 17-03-18 05:20:35.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632 17-03-18 05:20:35.694 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:35.694 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632 17-03-18 05:20:35.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632 17-03-18 05:20:35.694 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:35.694 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:35.694 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591168432, 0x0, 391868352) start. 17-03-18 05:20:35.694 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:35.694 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start. 17-03-18 05:20:35.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37683 822 17-03-18 05:20:36.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:20:36.084 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 389 ms. 17-03-18 05:20:36.084 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 05:20:36.084 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:36.084 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591168432, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 05:20:36.084 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 05:20:36.084 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:36.094 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 05:20:36.094 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 05:20:36.094 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 05:20:36.104 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-18 05:20:36.244 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:20:36.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:20:36.244 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:36.244 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:36.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:20:36.244 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:20:36.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:20:36.244 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:36.364 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:36.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 576162112, 0x0, 418435064) start. 17-03-18 05:20:36.434 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:20:36.434 -07 000000461 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:20:36.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37683 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall 17-03-18 05:20:36.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:36.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171704200720939. ------ 17-03-18 05:20:36.434 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:36.434 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17792 mm 17-03-18 05:20:36.434 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:36.444 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-18 05:20:36.444 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm 17-03-18 05:20:36.444 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:36.444 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38867, sync = True, waitForSettling = False) 17-03-18 05:20:36.444 -07 000000455 INF: Z Motor: Moving to -0.177922 mm, started at -0.171704 mm, distance = -6.22 um 17-03-18 05:20:36.444 -07 000000447 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:36.444 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:20:36.444 -07 000000626 INF: FPGA: Recv YRDPOS 122694 17-03-18 05:20:36.454 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:20:36.454 -07 000000382 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:36.454 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:20:36.454 -07 000000382 INF: Y Motor: Moving 1333 steps0 17-03-18 05:20:36.454 -07 000000455 INF: FPGA: Xmit ZDACW 38867\n [Z Motor] 17-03-18 05:20:36.454 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 05:20:36.464 -07 000000455 INF: FPGA: 'ZDACW 38867' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 05:20:36.464 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:36.474 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:20:36.484 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:36.484 -07 000000467 INF: FPGA: Recv ZDACR 38867 17-03-18 05:20:36.494 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:20:36.494 -07 000000455 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet)) 17-03-18 05:20:36.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 05:20:36.634 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 05:20:36.634 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:36.644 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 05:20:36.644 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 05:20:36.664 -07 000000467 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:36.664 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall 17-03-18 05:20:36.754 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:36.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 576162112, 0x0, 418435064) end. Duration was 396 ms. 17-03-18 05:20:36.754 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 05:20:36.754 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:36.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:36.764 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 05:20:36.764 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms. 17-03-18 05:20:36.844 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 05:20:36.844 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:20:36.884 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:36.894 -07 000000581 INF: FPGA: Recv YRDPOS 124378 17-03-18 05:20:36.894 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:20:36.894 -07 000000382 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:36.894 -07 000000382 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm) 17-03-18 05:20:36.894 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.099 mm/sec 17-03-18 05:20:37.844 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:37.844 -07 000000625 INF: FPGA: Recv YRDPOS 124379 17-03-18 05:20:37.854 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.854 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:37.884 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:37.884 -07 000000382 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:20:37.884 -07 000000382 INF: Y Motor: Moved to 60.7319 after 1442 ms (table move) 17-03-18 05:20:37.884 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177922 mm (DAC = 38867) 17-03-18 05:20:37.884 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.894 -07 000000461 INF: FPGA: Recv ZSGSRD 36980 17-03-18 05:20:37.894 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 05:20:37.894 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.894 -07 000000447 INF: FPGA: Recv ZSGSRD 36998 17-03-18 05:20:37.904 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.904 -07 000000479 INF: FPGA: Recv ZSGSRD 36986 17-03-18 05:20:37.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.914 -07 000000606 INF: FPGA: Recv ZSGSRD 36982 17-03-18 05:20:37.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.924 -07 000000512 INF: FPGA: Recv ZSGSRD 36981 17-03-18 05:20:37.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.934 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.934 -07 000000461 INF: FPGA: Recv ZSGSRD 36984 17-03-18 05:20:37.944 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.944 -07 000000474 INF: FPGA: Recv ZSGSRD 36991 17-03-18 05:20:37.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.954 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.954 -07 000000502 INF: FPGA: Recv ZSGSRD 36987 17-03-18 05:20:37.964 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.964 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.964 -07 000000569 INF: FPGA: Recv ZSGSRD 36987 17-03-18 05:20:37.974 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.974 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:37.974 -07 000000501 INF: FPGA: Recv ZSGSRD 36994 17-03-18 05:20:37.984 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.984 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:37.984 -07 000000480 INF: FPGA: Recv ZPIEZORD 33200 17-03-18 05:20:37.994 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:37.994 -07 000000618 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V. 17-03-18 05:20:37.994 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36987 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36986 (-177.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36980 (-177.0 uncal um), Max = 36998 (-177.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:20:37.994 -07 000000618 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36987, posNoise = 11, negNoise = 7 17-03-18 05:20:37.994 -07 000000618 INF: Z Motor: After move to -0.177922, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:37.994 -07 000000618 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms 17-03-18 05:20:37.994 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:38.044 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-18 05:20:38.044 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:38.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:38.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:38.044 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:38.044 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:38.044 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:38.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:38.044 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:20:38.044 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:38.054 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:20:38.054 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:38.064 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-18 05:20:38.064 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 05:20:38.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:38.114 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:38.404 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:38.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:38.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:38.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start. 17-03-18 05:20:38.444 -07 000000579 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:38.444 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:38.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 05:20:38.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 05:20:38.534 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:38.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:20:38.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-18 05:20:38.554 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:38.554 -07 000000625 INF: Autofocus start 17-03-18 05:20:38.554 -07 000000625 INF: MeasureProfile start 17-03-18 05:20:38.554 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:38.564 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:38.564 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:38.564 -07 000000625 INF: MeasureProfile done 17-03-18 05:20:38.564 -07 000000625 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:20:38.564 -07 000000625 INF: Autofocus finished 17-03-18 05:20:38.764 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:38.764 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:20:38.764 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177935686498447. ---------- 17-03-18 05:20:38.764 -07 000000610 INF: Cycle 136 Tile 2 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:38.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37382, sync = True, waitForSettling = True) 17-03-18 05:20:38.774 -07 000000610 INF: Z Motor: Moving to -0.171124 mm, started at -0.177936 mm, distance = 6.81 um 17-03-18 05:20:38.774 -07 000000610 INF: FPGA: Xmit ZDACW 37382\n [Z Motor] 17-03-18 05:20:38.774 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 05:20:38.784 -07 000000610 INF: FPGA: 'ZDACW 37382' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:38.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:38.784 -07 000000618 INF: FPGA: Recv ZDACR 37382 17-03-18 05:20:38.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:38.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:38.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:38.944 -07 000000502 INF: FPGA: Recv ZSGSRD 35931 17-03-18 05:20:38.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:38.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:38.954 -07 000000467 INF: FPGA: Recv ZSGSRD 35931 17-03-18 05:20:38.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:38.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:38.964 -07 000000608 INF: FPGA: Recv ZSGSRD 35926 17-03-18 05:20:38.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:38.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:38.974 -07 000000455 INF: FPGA: Recv ZSGSRD 35924 17-03-18 05:20:38.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:38.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:38.984 -07 000000618 INF: FPGA: Recv ZSGSRD 35935 17-03-18 05:20:38.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:38.994 -07 000000424 INF: FPGA: Recv ZSGSRD 35929 17-03-18 05:20:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:39.004 -07 000000382 INF: FPGA: Recv ZSGSRD 35930 17-03-18 05:20:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:39.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:39.014 -07 000000625 INF: FPGA: Recv ZSGSRD 35924 17-03-18 05:20:39.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:39.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:39.024 -07 000000501 INF: FPGA: Recv ZSGSRD 35924 17-03-18 05:20:39.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:39.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:39.034 -07 000000382 INF: FPGA: Recv ZSGSRD 35929 17-03-18 05:20:39.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:39.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:39.044 -07 000000474 INF: FPGA: Recv ZPIEZORD 31767 17-03-18 05:20:39.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:39.054 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.2 V. 17-03-18 05:20:39.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35928 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35929 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35924 (-170.2 uncal um), Max = 35935 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:20:39.054 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35928, posNoise = 7, negNoise = 4 17-03-18 05:20:39.054 -07 000000610 INF: Z Motor: After move to -0.171124, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:39.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:20:39.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:39.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:39.054 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:39.054 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:39.054 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:39.054 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:39.054 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:39.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:39.054 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:20:39.054 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:39.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:39.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:39.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:20:39.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:39.064 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:20:39.064 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:39.074 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 05:20:39.074 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:20:39.074 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 05:20:39.074 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:20:39.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37558 150\n [Camera] 17-03-18 05:20:39.284 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:39.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:20:39.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:20:39.714 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:39.714 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:39.714 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start. 17-03-18 05:20:39.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:20:39.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:20:39.724 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:39.724 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:39.724 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 05:20:39.914 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37558 822 17-03-18 05:20:40.064 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973 17-03-18 05:20:40.114 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 05:20:40.114 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:20:40.114 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:40.124 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 05:20:40.124 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 05:20:40.124 -07 000000479 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:40.124 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:40.124 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:20:40.124 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:40.134 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 05:20:40.234 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.015368, 17-03-18 05:20:40.274 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:20:40.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:20:40.274 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:40.274 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:40.274 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 05:20:40.274 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:20:40.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:20:40.274 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:40.274 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:40.274 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 05:20:40.464 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:20:40.464 -07 000000581 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:20:40.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37558 150' command took 2 ms to send, 1372 ms to get response, and 1381 ms overall 17-03-18 05:20:40.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:40.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171132445840323. ------ 17-03-18 05:20:40.464 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:40.464 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17793 mm 17-03-18 05:20:40.464 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:40.474 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-18 05:20:40.474 -07 000000467 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm 17-03-18 05:20:40.474 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:40.474 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38868, sync = True, waitForSettling = False) 17-03-18 05:20:40.474 -07 000000455 INF: Z Motor: Moving to -0.177926 mm, started at -0.171132 mm, distance = -6.79 um 17-03-18 05:20:40.474 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:40.474 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:20:40.474 -07 000000569 INF: FPGA: Recv YRDPOS 124379 17-03-18 05:20:40.484 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:40.484 -07 000000467 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:40.484 -07 000000467 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:20:40.484 -07 000000467 INF: Y Motor: Moving 1345 steps-23 17-03-18 05:20:40.484 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:40.494 -07 000000455 INF: FPGA: Xmit ZDACW 38868\n [Z Motor] 17-03-18 05:20:40.494 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 05:20:40.504 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:20:40.504 -07 000000455 INF: FPGA: 'ZDACW 38868' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:20:40.514 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:40.514 -07 000000626 INF: FPGA: Recv ZDACR 38868 17-03-18 05:20:40.524 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:20:40.524 -07 000000455 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 05:20:40.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 05:20:40.664 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 05:20:40.664 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:40.664 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:40.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 05:20:40.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:20:40.664 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:40.674 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 05:20:40.674 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:20:40.674 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 05:20:40.684 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:40.684 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 05:20:40.874 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 05:20:40.874 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:20:40.924 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:40.934 -07 000000608 INF: FPGA: Recv YRDPOS 126080 17-03-18 05:20:40.934 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 05:20:40.934 -07 000000467 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:40.934 -07 000000467 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 05:20:40.934 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec 17-03-18 05:20:41.754 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:41.884 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:41.884 -07 000000502 INF: FPGA: Recv YRDPOS 126080 17-03-18 05:20:41.894 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.894 -07 000000467 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:41.924 -07 000000467 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:41.924 -07 000000467 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:20:41.924 -07 000000467 INF: Y Motor: Moved to 61.5625 after 1451 ms (table move) 17-03-18 05:20:41.924 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177926 mm (DAC = 38868) 17-03-18 05:20:41.924 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.924 -07 000000569 INF: FPGA: Recv ZSGSRD 36991 17-03-18 05:20:41.934 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:41.934 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.934 -07 000000480 INF: FPGA: Recv ZSGSRD 36993 17-03-18 05:20:41.944 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.944 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.944 -07 000000512 INF: FPGA: Recv ZSGSRD 36990 17-03-18 05:20:41.954 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.954 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.954 -07 000000424 INF: FPGA: Recv ZSGSRD 36985 17-03-18 05:20:41.964 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.964 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.964 -07 000000618 INF: FPGA: Recv ZSGSRD 36984 17-03-18 05:20:41.974 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.974 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.974 -07 000000479 INF: FPGA: Recv ZSGSRD 36986 17-03-18 05:20:41.984 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.984 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.984 -07 000000480 INF: FPGA: Recv ZSGSRD 36988 17-03-18 05:20:41.994 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:41.994 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:41.994 -07 000000512 INF: FPGA: Recv ZSGSRD 36980 17-03-18 05:20:42.004 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:42.004 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:42.004 -07 000000626 INF: FPGA: Recv ZSGSRD 36983 17-03-18 05:20:42.014 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:42.014 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:42.014 -07 000000618 INF: FPGA: Recv ZSGSRD 36993 17-03-18 05:20:42.024 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:42.024 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:42.024 -07 000000581 INF: FPGA: Recv ZPIEZORD 33239 17-03-18 05:20:42.034 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:42.034 -07 000000625 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.3 V. 17-03-18 05:20:42.034 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36987 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36987 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36980 (-177.0 uncal um), Max = 36993 (-177.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:20:42.034 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36987, posNoise = 6, negNoise = 7 17-03-18 05:20:42.034 -07 000000625 INF: Z Motor: After move to -0.177926, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:42.034 -07 000000625 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms 17-03-18 05:20:42.034 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:42.084 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-18 05:20:42.084 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:42.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:42.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:42.084 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:42.084 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:42.084 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:42.084 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:42.084 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 05:20:42.084 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:42.094 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:42.094 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:42.094 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:20:42.094 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 05:20:42.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:42.144 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:42.444 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:42.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:42.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:42.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start. 17-03-18 05:20:42.484 -07 000000618 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:42.484 -07 000000608 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:42.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-18 05:20:42.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:20:42.564 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:42.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:20:42.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:20:42.584 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:42.584 -07 000000579 INF: Autofocus start 17-03-18 05:20:42.584 -07 000000579 INF: MeasureProfile start 17-03-18 05:20:42.594 -07 000000479 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:42.594 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall 17-03-18 05:20:42.594 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:42.594 -07 000000579 INF: MeasureProfile done 17-03-18 05:20:42.594 -07 000000579 INF: X=0 Z correction [um]=-0.0713522 17-03-18 05:20:42.594 -07 000000579 INF: Autofocus finished 17-03-18 05:20:42.794 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:42.794 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 05:20:42.794 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177935686498447. ---------- 17-03-18 05:20:42.804 -07 000000610 INF: Cycle 136 Tile 3 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:42.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37365, sync = True, waitForSettling = True) 17-03-18 05:20:42.804 -07 000000610 INF: Z Motor: Moving to -0.171046 mm, started at -0.177936 mm, distance = 6.89 um 17-03-18 05:20:42.804 -07 000000610 INF: FPGA: Xmit ZDACW 37365\n [Z Motor] 17-03-18 05:20:42.804 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 05:20:42.814 -07 000000610 INF: FPGA: 'ZDACW 37365' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:20:42.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:42.814 -07 000000424 INF: FPGA: Recv ZDACR 37365 17-03-18 05:20:42.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:42.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:42.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:42.974 -07 000000618 INF: FPGA: Recv ZSGSRD 35919 17-03-18 05:20:42.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:42.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:42.984 -07 000000581 INF: FPGA: Recv ZSGSRD 35918 17-03-18 05:20:42.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:42.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:42.994 -07 000000479 INF: FPGA: Recv ZSGSRD 35914 17-03-18 05:20:43.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.004 -07 000000501 INF: FPGA: Recv ZSGSRD 35912 17-03-18 05:20:43.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.014 -07 000000424 INF: FPGA: Recv ZSGSRD 35914 17-03-18 05:20:43.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.024 -07 000000626 INF: FPGA: Recv ZSGSRD 35925 17-03-18 05:20:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.034 -07 000000467 INF: FPGA: Recv ZSGSRD 35917 17-03-18 05:20:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.044 -07 000000569 INF: FPGA: Recv ZSGSRD 35920 17-03-18 05:20:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35915 17-03-18 05:20:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:43.064 -07 000000479 INF: FPGA: Recv ZSGSRD 35913 17-03-18 05:20:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:43.074 -07 000000626 INF: FPGA: Recv ZPIEZORD 31770 17-03-18 05:20:43.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:43.084 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.1 V. 17-03-18 05:20:43.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35917 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35912 (-170.2 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:20:43.084 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35917, posNoise = 8, negNoise = 5 17-03-18 05:20:43.084 -07 000000610 INF: Z Motor: After move to -0.171046, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:43.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-18 05:20:43.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:43.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:43.084 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:43.084 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:43.084 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:43.084 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:43.084 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:43.084 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:43.094 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:20:43.094 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:43.094 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:20:43.094 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:43.094 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:43.094 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:43.094 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:20:43.094 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:43.104 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:20:43.104 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:20:43.104 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:20:43.104 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 05:20:43.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37542 150\n [Camera] 17-03-18 05:20:43.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:43.744 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:20:43.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:20:43.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:43.744 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:20:43.744 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:43.744 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:20:43.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:20:43.754 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:43.754 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:43.754 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:20:43.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37542 822 17-03-18 05:20:44.094 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:20:44.134 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms. 17-03-18 05:20:44.134 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 05:20:44.134 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:44.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:44.144 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 05:20:44.144 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 05:20:44.144 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:44.144 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 05:20:44.144 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:44.144 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:20:44.294 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:20:44.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:20:44.294 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:44.304 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:44.304 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-18 05:20:44.304 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:20:44.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:20:44.304 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:44.304 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:44.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:20:44.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1377 17-03-18 05:20:44.494 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:20:44.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37542 150' command took 2 ms to send, 1373 ms to get response, and 1384 ms overall 17-03-18 05:20:44.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:44.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171061779506763. ------ 17-03-18 05:20:44.494 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:44.494 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17723 mm 17-03-18 05:20:44.504 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:44.504 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-18 05:20:44.504 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm 17-03-18 05:20:44.504 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:44.504 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:20:44.504 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:44.504 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38715, sync = True, waitForSettling = False) 17-03-18 05:20:44.504 -07 000000579 INF: Z Motor: Moving to -0.177226 mm, started at -0.171062 mm, distance = -6.16 um 17-03-18 05:20:44.504 -07 000000618 INF: FPGA: Recv YRDPOS 126080 17-03-18 05:20:44.514 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:20:44.514 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:44.514 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:20:44.514 -07 000000382 INF: Y Motor: Moving 1344 steps-21 17-03-18 05:20:44.514 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:44.524 -07 000000579 INF: FPGA: Xmit ZDACW 38715\n [Z Motor] 17-03-18 05:20:44.524 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 05:20:44.534 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:20:44.534 -07 000000579 INF: FPGA: 'ZDACW 38715' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 05:20:44.544 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:44.544 -07 000000474 INF: FPGA: Recv ZDACR 38715 17-03-18 05:20:44.554 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:20:44.554 -07 000000579 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet)) 17-03-18 05:20:44.704 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 05:20:44.704 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 05:20:44.704 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:44.704 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 05:20:44.704 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 05:20:44.704 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:44.704 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:44.704 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:20:44.704 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 05:20:44.714 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 05:20:44.714 -07 000000608 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:44.714 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 215 ms overall 17-03-18 05:20:44.904 -07 000000474 INF: FPGA: Recv YMVTILE 17-03-18 05:20:44.904 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:20:44.954 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:44.964 -07 000000569 INF: FPGA: Recv YRDPOS 127784 17-03-18 05:20:44.964 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:20:44.964 -07 000000382 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:44.964 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-18 05:20:44.964 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec 17-03-18 05:20:45.594 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.996267, 17-03-18 05:20:45.914 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:45.914 -07 000000479 INF: FPGA: Recv YRDPOS 127784 17-03-18 05:20:45.924 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:45.924 -07 000000382 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:45.954 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:45.954 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:20:45.954 -07 000000382 INF: Y Motor: Moved to 62.3945 after 1448 ms (table move) 17-03-18 05:20:45.954 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177226 mm (DAC = 38715) 17-03-18 05:20:45.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:45.964 -07 000000625 INF: FPGA: Recv ZSGSRD 36870 17-03-18 05:20:45.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall 17-03-18 05:20:45.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:45.964 -07 000000479 INF: FPGA: Recv ZSGSRD 36883 17-03-18 05:20:45.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:20:45.974 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:45.974 -07 000000501 INF: FPGA: Recv ZSGSRD 36883 17-03-18 05:20:45.984 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:45.984 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:45.984 -07 000000581 INF: FPGA: Recv ZSGSRD 36873 17-03-18 05:20:45.994 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:45.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:45.994 -07 000000382 INF: FPGA: Recv ZSGSRD 36874 17-03-18 05:20:46.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:46.004 -07 000000467 INF: FPGA: Recv ZSGSRD 36876 17-03-18 05:20:46.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:46.014 -07 000000618 INF: FPGA: Recv ZSGSRD 36879 17-03-18 05:20:46.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:46.024 -07 000000480 INF: FPGA: Recv ZSGSRD 36880 17-03-18 05:20:46.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:46.034 -07 000000474 INF: FPGA: Recv ZSGSRD 36880 17-03-18 05:20:46.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:46.044 -07 000000569 INF: FPGA: Recv ZSGSRD 36875 17-03-18 05:20:46.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.054 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:46.054 -07 000000579 INF: FPGA: Recv ZPIEZORD 33080 17-03-18 05:20:46.064 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:20:46.064 -07 000000512 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.908 V. Piezo Error = -8.4 V. 17-03-18 05:20:46.064 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36877 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36878 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36870 (-176.3 uncal um), Max = 36883 (-176.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:20:46.064 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36877, posNoise = 6, negNoise = 7 17-03-18 05:20:46.064 -07 000000512 INF: Z Motor: After move to -0.177226, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:46.064 -07 000000512 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms 17-03-18 05:20:46.064 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:46.114 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms 17-03-18 05:20:46.114 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:46.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:46.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:46.114 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:46.114 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:46.114 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:46.114 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:46.114 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:20:46.114 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:46.124 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:46.124 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:46.124 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:20:46.124 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:20:46.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:46.174 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:46.474 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:46.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:46.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:46.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) start. 17-03-18 05:20:46.514 -07 000000474 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:46.514 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:46.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:20:46.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:20:46.594 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:46.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:20:46.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:20:46.614 -07 000000424 INF: Autofocus start 17-03-18 05:20:46.614 -07 000000424 INF: MeasureProfile start 17-03-18 05:20:46.614 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:46.614 -07 000000625 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:46.624 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:46.624 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:46.624 -07 000000424 INF: MeasureProfile done 17-03-18 05:20:46.624 -07 000000424 INF: X=32 Z correction [um]=0.09220707 17-03-18 05:20:46.624 -07 000000424 INF: Autofocus finished 17-03-18 05:20:46.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:46.824 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:46.824 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 05:20:46.824 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177229023162854. ---------- 17-03-18 05:20:46.824 -07 000000610 INF: Cycle 136 Tile 4 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:46.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37248, sync = True, waitForSettling = True) 17-03-18 05:20:46.834 -07 000000610 INF: Z Motor: Moving to -0.170510 mm, started at -0.177229 mm, distance = 6.72 um 17-03-18 05:20:46.834 -07 000000610 INF: FPGA: Xmit ZDACW 37248\n [Z Motor] 17-03-18 05:20:46.834 -07 000000502 INF: FPGA: Recv ZDACW 17-03-18 05:20:46.844 -07 000000610 INF: FPGA: 'ZDACW 37248' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:20:46.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:46.844 -07 000000474 INF: FPGA: Recv ZDACR 37248 17-03-18 05:20:46.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:46.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:47.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.004 -07 000000501 INF: FPGA: Recv ZSGSRD 35827 17-03-18 05:20:47.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:47.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.014 -07 000000502 INF: FPGA: Recv ZSGSRD 35832 17-03-18 05:20:47.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.024 -07 000000424 INF: FPGA: Recv ZSGSRD 35828 17-03-18 05:20:47.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.034 -07 000000579 INF: FPGA: Recv ZSGSRD 35834 17-03-18 05:20:47.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.044 -07 000000479 INF: FPGA: Recv ZSGSRD 35828 17-03-18 05:20:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.054 -07 000000461 INF: FPGA: Recv ZSGSRD 35837 17-03-18 05:20:47.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35833 17-03-18 05:20:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.074 -07 000000474 INF: FPGA: Recv ZSGSRD 35831 17-03-18 05:20:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.084 -07 000000579 INF: FPGA: Recv ZSGSRD 35831 17-03-18 05:20:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:47.094 -07 000000382 INF: FPGA: Recv ZSGSRD 35835 17-03-18 05:20:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:47.104 -07 000000455 INF: FPGA: Recv ZPIEZORD 31692 17-03-18 05:20:47.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:47.114 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.1 V. 17-03-18 05:20:47.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35832 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35827 (-169.6 uncal um), Max = 35837 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:20:47.114 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35832, posNoise = 5, negNoise = 5 17-03-18 05:20:47.114 -07 000000610 INF: Z Motor: After move to -0.170510, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:47.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:20:47.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:47.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:47.114 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:47.114 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:47.114 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:47.114 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:47.114 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:47.114 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:47.114 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 05:20:47.114 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:47.114 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-18 05:20:47.114 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:47.124 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:20:47.124 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:47.124 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:20:47.124 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:47.134 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:20:47.134 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:20:47.134 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:20:47.134 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 05:20:47.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37424 150\n [Camera] 17-03-18 05:20:47.334 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:47.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:20:47.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:20:47.774 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:47.774 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:47.774 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-18 05:20:47.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:20:47.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:20:47.774 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:47.774 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:47.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-18 05:20:47.964 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37424 822 17-03-18 05:20:48.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:20:48.154 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 386 ms. 17-03-18 05:20:48.154 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 05:20:48.154 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:48.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 386 ms. 17-03-18 05:20:48.164 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 05:20:48.164 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:48.164 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:48.164 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 05:20:48.164 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:48.174 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 05:20:48.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:20:48.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:20:48.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:20:48.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:20:48.334 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:48.334 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:48.334 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:48.334 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 05:20:48.334 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:48.334 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 05:20:48.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:20:48.514 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:20:48.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37424 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:20:48.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:48.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170515721474714. ------ 17-03-18 05:20:48.524 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:48.524 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17682 mm 17-03-18 05:20:48.524 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:48.524 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-18 05:20:48.524 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm 17-03-18 05:20:48.524 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38627, sync = True, waitForSettling = False) 17-03-18 05:20:48.524 -07 000000579 INF: Z Motor: Moving to -0.176823 mm, started at -0.170516 mm, distance = -6.31 um 17-03-18 05:20:48.524 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:48.534 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:20:48.534 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:48.534 -07 000000618 INF: FPGA: Recv YRDPOS 127784 17-03-18 05:20:48.544 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 05:20:48.544 -07 000000382 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:48.544 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:20:48.544 -07 000000382 INF: Y Motor: Moving 1341 steps-17 17-03-18 05:20:48.544 -07 000000579 INF: FPGA: Xmit ZDACW 38627\n [Z Motor] 17-03-18 05:20:48.544 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:20:48.554 -07 000000579 INF: FPGA: 'ZDACW 38627' command took 3 ms to send, 0 ms to get response, and 24 ms overall 17-03-18 05:20:48.554 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:48.564 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:20:48.574 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:48.574 -07 000000501 INF: FPGA: Recv ZDACR 38627 17-03-18 05:20:48.584 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:20:48.584 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-18 05:20:48.734 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 05:20:48.734 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:20:48.734 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:48.734 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms. 17-03-18 05:20:48.734 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:20:48.734 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:48.744 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:48.744 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:20:48.744 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-18 05:20:48.744 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 05:20:48.754 -07 000000461 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:48.754 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-18 05:20:48.934 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 05:20:48.934 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-18 05:20:48.984 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:48.994 -07 000000467 INF: FPGA: Recv YRDPOS 129480 17-03-18 05:20:48.994 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall 17-03-18 05:20:48.994 -07 000000382 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:48.994 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 05:20:48.994 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec 17-03-18 05:20:49.944 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:49.944 -07 000000608 INF: FPGA: Recv YRDPOS 129480 17-03-18 05:20:49.954 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:49.954 -07 000000382 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:49.984 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:49.984 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:20:49.984 -07 000000382 INF: Y Motor: Moved to 63.2227 after 1458 ms (table move) 17-03-18 05:20:49.984 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176823 mm (DAC = 38627) 17-03-18 05:20:49.984 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:49.994 -07 000000455 INF: FPGA: Recv ZSGSRD 36812 17-03-18 05:20:49.994 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall 17-03-18 05:20:49.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:49.994 -07 000000626 INF: FPGA: Recv ZSGSRD 36814 17-03-18 05:20:50.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:50.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.004 -07 000000608 INF: FPGA: Recv ZSGSRD 36812 17-03-18 05:20:50.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.014 -07 000000455 INF: FPGA: Recv ZSGSRD 36816 17-03-18 05:20:50.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.024 -07 000000626 INF: FPGA: Recv ZSGSRD 36813 17-03-18 05:20:50.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.034 -07 000000608 INF: FPGA: Recv ZSGSRD 36819 17-03-18 05:20:50.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.044 -07 000000606 INF: FPGA: Recv ZSGSRD 36807 17-03-18 05:20:50.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.054 -07 000000461 INF: FPGA: Recv ZSGSRD 36812 17-03-18 05:20:50.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.064 -07 000000455 INF: FPGA: Recv ZSGSRD 36813 17-03-18 05:20:50.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:50.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36824 17-03-18 05:20:50.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:20:50.094 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:50.094 -07 000000461 INF: FPGA: Recv ZPIEZORD 33015 17-03-18 05:20:50.104 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.104 -07 000000512 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.894 V. Piezo Error = -8.4 V. 17-03-18 05:20:50.104 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36814 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36813 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36807 (-175.9 uncal um), Max = 36824 (-176.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:20:50.104 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36814, posNoise = 10, negNoise = 7 17-03-18 05:20:50.104 -07 000000512 INF: Z Motor: After move to -0.176823, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:50.104 -07 000000512 INF: Z Motor: Settle wait time = 1461 ms, measure time = 114 ms (allowed 150 ms), total time = 1575 ms 17-03-18 05:20:50.104 -07 000000512 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:50.144 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms 17-03-18 05:20:50.144 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:50.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:50.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:50.144 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:50.144 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:50.144 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:50.144 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:50.144 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:50.154 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:50.154 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:50.154 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:50.164 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:20:50.164 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:20:50.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:50.204 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:50.504 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:50.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:50.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:50.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start. 17-03-18 05:20:50.544 -07 000000608 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:50.544 -07 000000461 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:50.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 05:20:50.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:20:50.624 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:50.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:20:50.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:20:50.644 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:50.644 -07 000000608 INF: Autofocus start 17-03-18 05:20:50.644 -07 000000608 INF: MeasureProfile start 17-03-18 05:20:50.644 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:50.654 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:50.654 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:50.654 -07 000000608 INF: MeasureProfile done 17-03-18 05:20:50.654 -07 000000608 INF: X=80 Z correction [um]=0.337546 17-03-18 05:20:50.654 -07 000000608 INF: Autofocus finished 17-03-18 05:20:50.854 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:50.854 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:20:50.854 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176824297797923. ---------- 17-03-18 05:20:50.854 -07 000000610 INF: Cycle 136 Tile 5 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:50.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37213, sync = True, waitForSettling = True) 17-03-18 05:20:50.864 -07 000000610 INF: Z Motor: Moving to -0.170350 mm, started at -0.176824 mm, distance = 6.47 um 17-03-18 05:20:50.864 -07 000000610 INF: FPGA: Xmit ZDACW 37213\n [Z Motor] 17-03-18 05:20:50.864 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:20:50.874 -07 000000610 INF: FPGA: 'ZDACW 37213' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:20:50.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:50.874 -07 000000447 INF: FPGA: Recv ZDACR 37213 17-03-18 05:20:50.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:50.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:50.954 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.978563, 17-03-18 05:20:51.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.034 -07 000000579 INF: FPGA: Recv ZSGSRD 35809 17-03-18 05:20:51.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:51.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.044 -07 000000480 INF: FPGA: Recv ZSGSRD 35810 17-03-18 05:20:51.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.054 -07 000000626 INF: FPGA: Recv ZSGSRD 35811 17-03-18 05:20:51.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.064 -07 000000502 INF: FPGA: Recv ZSGSRD 35805 17-03-18 05:20:51.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.074 -07 000000467 INF: FPGA: Recv ZSGSRD 35806 17-03-18 05:20:51.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.084 -07 000000618 INF: FPGA: Recv ZSGSRD 35807 17-03-18 05:20:51.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35807 17-03-18 05:20:51.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.104 -07 000000608 INF: FPGA: Recv ZSGSRD 35821 17-03-18 05:20:51.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.114 -07 000000447 INF: FPGA: Recv ZSGSRD 35811 17-03-18 05:20:51.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:51.124 -07 000000382 INF: FPGA: Recv ZSGSRD 35812 17-03-18 05:20:51.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:51.134 -07 000000618 INF: FPGA: Recv ZPIEZORD 31683 17-03-18 05:20:51.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:51.144 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.1 V. 17-03-18 05:20:51.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35810 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35810 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35805 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:20:51.144 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35810, posNoise = 11, negNoise = 5 17-03-18 05:20:51.144 -07 000000610 INF: Z Motor: After move to -0.170350, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:51.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:20:51.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:51.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:51.144 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:51.144 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:51.144 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:51.144 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:51.144 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:51.144 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:51.144 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:51.144 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:51.144 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:20:51.144 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:51.154 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:20:51.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:51.154 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:20:51.154 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:51.164 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 05:20:51.164 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:20:51.164 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 05:20:51.164 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:20:51.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37390 150\n [Camera] 17-03-18 05:20:51.364 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:51.754 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:51.804 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:20:51.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:20:51.804 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:51.804 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:51.804 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start. 17-03-18 05:20:51.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:20:51.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:20:51.814 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:51.814 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:51.814 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-18 05:20:51.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37390 822 17-03-18 05:20:52.144 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:20:52.204 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 05:20:52.204 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 05:20:52.204 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:52.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 05:20:52.204 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 05:20:52.204 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:52.204 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:52.204 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:20:52.204 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:52.214 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-18 05:20:52.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:20:52.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:20:52.364 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:52.364 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:52.364 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-18 05:20:52.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:20:52.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:20:52.364 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:52.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:52.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-18 05:20:52.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:20:52.554 -07 000000479 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:20:52.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37390 150' command took 2 ms to send, 1371 ms to get response, and 1382 ms overall 17-03-18 05:20:52.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:52.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170374388807595. ------ 17-03-18 05:20:52.554 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:52.554 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17672 mm 17-03-18 05:20:52.564 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:52.564 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:52.564 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall 17-03-18 05:20:52.564 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:52.564 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-18 05:20:52.564 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm 17-03-18 05:20:52.564 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38605, sync = True, waitForSettling = False) 17-03-18 05:20:52.564 -07 000000608 INF: Z Motor: Moving to -0.176722 mm, started at -0.170374 mm, distance = -6.35 um 17-03-18 05:20:52.574 -07 000000608 INF: FPGA: Xmit ZDACW 38605\n [Z Motor] 17-03-18 05:20:52.574 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:20:52.584 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:52.584 -07 000000608 INF: FPGA: 'ZDACW 38605' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:20:52.584 -07 000000618 INF: FPGA: Recv YRDPOS 129480 17-03-18 05:20:52.594 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 05:20:52.594 -07 000000447 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:52.594 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:20:52.594 -07 000000447 INF: Y Motor: Moving 1344 steps-20 17-03-18 05:20:52.594 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:52.594 -07 000000467 INF: FPGA: Recv ZDACR 38605 17-03-18 05:20:52.604 -07 000000608 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:20:52.604 -07 000000608 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-18 05:20:52.604 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:20:52.764 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 05:20:52.764 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 05:20:52.764 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:52.764 -07 000000579 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:52.764 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall 17-03-18 05:20:52.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 402 ms. 17-03-18 05:20:52.764 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:20:52.764 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:52.774 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 05:20:52.774 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 05:20:52.774 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:20:52.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 05:20:52.974 -07 000000474 INF: FPGA: Recv YMVTILE 17-03-18 05:20:52.974 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 05:20:53.024 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:53.034 -07 000000501 INF: FPGA: Recv YRDPOS 131186 17-03-18 05:20:53.034 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:20:53.034 -07 000000447 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:53.034 -07 000000447 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm) 17-03-18 05:20:53.034 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec 17-03-18 05:20:53.984 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:53.984 -07 000000606 INF: FPGA: Recv YRDPOS 131186 17-03-18 05:20:53.994 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:53.994 -07 000000447 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:54.024 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:54.024 -07 000000447 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:20:54.024 -07 000000447 INF: Y Motor: Moved to 64.0557 after 1457 ms (table move) 17-03-18 05:20:54.024 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176722 mm (DAC = 38605) 17-03-18 05:20:54.024 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.024 -07 000000512 INF: FPGA: Recv ZSGSRD 36798 17-03-18 05:20:54.034 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:20:54.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.034 -07 000000501 INF: FPGA: Recv ZSGSRD 36795 17-03-18 05:20:54.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.044 -07 000000461 INF: FPGA: Recv ZSGSRD 36797 17-03-18 05:20:54.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.054 -07 000000608 INF: FPGA: Recv ZSGSRD 36796 17-03-18 05:20:54.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36794 17-03-18 05:20:54.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.074 -07 000000606 INF: FPGA: Recv ZSGSRD 36798 17-03-18 05:20:54.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36801 17-03-18 05:20:54.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36806 17-03-18 05:20:54.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.104 -07 000000502 INF: FPGA: Recv ZSGSRD 36799 17-03-18 05:20:54.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:54.114 -07 000000447 INF: FPGA: Recv ZSGSRD 36795 17-03-18 05:20:54.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.124 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:54.124 -07 000000501 INF: FPGA: Recv ZPIEZORD 32998 17-03-18 05:20:54.134 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.134 -07 000000626 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.4 V. 17-03-18 05:20:54.134 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36798 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36798 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36794 (-175.8 uncal um), Max = 36806 (-175.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:20:54.134 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36798, posNoise = 8, negNoise = 4 17-03-18 05:20:54.134 -07 000000626 INF: Z Motor: After move to -0.176722, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:54.134 -07 000000626 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms 17-03-18 05:20:54.134 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:54.184 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms 17-03-18 05:20:54.184 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:54.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:54.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:54.184 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:54.184 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:54.184 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:54.184 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:54.184 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:20:54.184 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:54.194 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:54.194 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:54.194 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:20:54.194 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:20:54.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:54.244 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:54.544 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:54.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:54.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:54.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start. 17-03-18 05:20:54.584 -07 000000618 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:54.584 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:54.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall 17-03-18 05:20:54.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 117 ms. 17-03-18 05:20:54.664 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:54.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:20:54.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:20:54.684 -07 000000474 INF: Autofocus start 17-03-18 05:20:54.684 -07 000000474 INF: MeasureProfile start 17-03-18 05:20:54.684 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:54.684 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:54.694 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:20:54.694 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:54.694 -07 000000474 INF: MeasureProfile done 17-03-18 05:20:54.694 -07 000000474 INF: X=48 Z correction [um]=0.1739867 17-03-18 05:20:54.694 -07 000000474 INF: Autofocus finished 17-03-18 05:20:54.894 -07 000000479 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:54.894 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall 17-03-18 05:20:54.894 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176721510403655. ---------- 17-03-18 05:20:54.904 -07 000000610 INF: Cycle 136 Tile 6 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:54.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37155, sync = True, waitForSettling = True) 17-03-18 05:20:54.904 -07 000000610 INF: Z Motor: Moving to -0.170085 mm, started at -0.176722 mm, distance = 6.64 um 17-03-18 05:20:54.904 -07 000000610 INF: FPGA: Xmit ZDACW 37155\n [Z Motor] 17-03-18 05:20:54.904 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 05:20:54.914 -07 000000610 INF: FPGA: 'ZDACW 37155' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:20:54.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:54.914 -07 000000502 INF: FPGA: Recv ZDACR 37155 17-03-18 05:20:54.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:54.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.074 -07 000000424 INF: FPGA: Recv ZSGSRD 35770 17-03-18 05:20:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.084 -07 000000501 INF: FPGA: Recv ZSGSRD 35767 17-03-18 05:20:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.094 -07 000000579 INF: FPGA: Recv ZSGSRD 35763 17-03-18 05:20:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.104 -07 000000455 INF: FPGA: Recv ZSGSRD 35764 17-03-18 05:20:55.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.114 -07 000000569 INF: FPGA: Recv ZSGSRD 35770 17-03-18 05:20:55.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.124 -07 000000461 INF: FPGA: Recv ZSGSRD 35768 17-03-18 05:20:55.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.134 -07 000000625 INF: FPGA: Recv ZSGSRD 35768 17-03-18 05:20:55.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35764 17-03-18 05:20:55.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.154 -07 000000424 INF: FPGA: Recv ZSGSRD 35765 17-03-18 05:20:55.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:55.164 -07 000000512 INF: FPGA: Recv ZSGSRD 35769 17-03-18 05:20:55.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:55.174 -07 000000467 INF: FPGA: Recv ZPIEZORD 31604 17-03-18 05:20:55.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:55.184 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.2 V. 17-03-18 05:20:55.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35767 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35768 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35763 (-169.2 uncal um), Max = 35770 (-169.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:20:55.184 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35767, posNoise = 3, negNoise = 4 17-03-18 05:20:55.184 -07 000000610 INF: Z Motor: After move to -0.170085, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:55.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:20:55.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:55.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:55.184 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:55.184 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:55.184 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:55.184 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:55.184 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:55.184 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:55.184 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:55.184 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:55.184 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:20:55.184 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:55.194 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:20:55.194 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:55.194 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:20:55.194 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:55.204 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:20:55.204 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:20:55.204 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:20:55.204 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:20:55.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37332 150\n [Camera] 17-03-18 05:20:55.404 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:55.844 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:20:55.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:20:55.844 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:55.844 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:55.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start. 17-03-18 05:20:55.844 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:20:55.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:20:55.844 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:55.844 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:55.844 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start. 17-03-18 05:20:56.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37332 822 17-03-18 05:20:56.184 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:20:56.224 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 05:20:56.224 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 05:20:56.224 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:56.224 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:20:56.224 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 05:20:56.224 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 383 ms. 17-03-18 05:20:56.224 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-18 05:20:56.224 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:56.234 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:20:56.234 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 05:20:56.314 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.977204, 17-03-18 05:20:56.394 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1185 17-03-18 05:20:56.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1185 17-03-18 05:20:56.394 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:56.544 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1185 17-03-18 05:20:56.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1185 17-03-18 05:20:56.544 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:56.544 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:20:56.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 576162112, 0x0, 391868352) start. 17-03-18 05:20:56.554 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:56.554 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 05:20:56.584 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:20:56.584 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:20:56.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37332 150' command took 2 ms to send, 1375 ms to get response, and 1381 ms overall 17-03-18 05:20:56.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:20:56.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.170098147685499. ------ 17-03-18 05:20:56.594 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:56.594 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17644 mm 17-03-18 05:20:56.594 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:20:56.594 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-18 05:20:56.594 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38543, sync = True, waitForSettling = False) 17-03-18 05:20:56.594 -07 000000569 INF: Z Motor: Moving to -0.176439 mm, started at -0.170098 mm, distance = -6.34 um 17-03-18 05:20:56.594 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm 17-03-18 05:20:56.594 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:56.604 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:56.604 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:56.604 -07 000000625 INF: FPGA: Recv YRDPOS 131187 17-03-18 05:20:56.614 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 05:20:56.614 -07 000000447 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:56.614 -07 000000569 INF: FPGA: Xmit ZDACW 38543\n [Z Motor] 17-03-18 05:20:56.614 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 05:20:56.614 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:20:56.614 -07 000000447 INF: Y Motor: Moving 1338 steps-14 17-03-18 05:20:56.624 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:20:56.624 -07 000000569 INF: FPGA: 'ZDACW 38543' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-18 05:20:56.634 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:20:56.644 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:56.644 -07 000000382 INF: FPGA: Recv ZDACR 38543 17-03-18 05:20:56.654 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:20:56.654 -07 000000569 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet)) 17-03-18 05:20:56.754 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:20:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:20:56.824 -07 000000467 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:20:56.824 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:20:56.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 576162112, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 05:20:56.944 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 05:20:56.944 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:56.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms. 17-03-18 05:20:56.944 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 05:20:56.944 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:56.954 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:20:56.954 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 554 ms. 17-03-18 05:20:56.954 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:20:56.954 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 05:20:57.004 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 05:20:57.004 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall 17-03-18 05:20:57.054 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:57.064 -07 000000480 INF: FPGA: Recv YRDPOS 132869 17-03-18 05:20:57.064 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall 17-03-18 05:20:57.064 -07 000000447 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:57.064 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 05:20:57.064 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.135 mm/sec 17-03-18 05:20:58.014 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:20:58.014 -07 000000455 INF: FPGA: Recv YRDPOS 132870 17-03-18 05:20:58.024 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:58.024 -07 000000447 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:20:58.054 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:20:58.054 -07 000000447 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:20:58.054 -07 000000447 INF: Y Motor: Moved to 64.8779 after 1457 ms (table move) 17-03-18 05:20:58.054 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176439 mm (DAC = 38543) 17-03-18 05:20:58.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.054 -07 000000608 INF: FPGA: Recv ZSGSRD 36760 17-03-18 05:20:58.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:58.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.064 -07 000000480 INF: FPGA: Recv ZSGSRD 36751 17-03-18 05:20:58.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.074 -07 000000382 INF: FPGA: Recv ZSGSRD 36762 17-03-18 05:20:58.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.084 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.084 -07 000000626 INF: FPGA: Recv ZSGSRD 36759 17-03-18 05:20:58.094 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.094 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36756 17-03-18 05:20:58.104 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.104 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.104 -07 000000579 INF: FPGA: Recv ZSGSRD 36754 17-03-18 05:20:58.114 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.114 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.114 -07 000000569 INF: FPGA: Recv ZSGSRD 36751 17-03-18 05:20:58.124 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.124 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.124 -07 000000625 INF: FPGA: Recv ZSGSRD 36750 17-03-18 05:20:58.134 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.134 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.134 -07 000000447 INF: FPGA: Recv ZSGSRD 36758 17-03-18 05:20:58.144 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.144 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:58.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36758 17-03-18 05:20:58.154 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.154 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:58.154 -07 000000579 INF: FPGA: Recv ZPIEZORD 32934 17-03-18 05:20:58.164 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.164 -07 000000474 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.5 V. 17-03-18 05:20:58.164 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36756 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36757 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36750 (-175.5 uncal um), Max = 36762 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:20:58.164 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36756, posNoise = 6, negNoise = 6 17-03-18 05:20:58.164 -07 000000474 INF: Z Motor: After move to -0.176439, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:58.164 -07 000000474 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms 17-03-18 05:20:58.164 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:20:58.214 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms 17-03-18 05:20:58.214 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:20:58.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:58.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:58.214 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:58.214 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:58.214 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:20:58.214 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:58.214 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:20:58.214 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:20:58.224 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:58.224 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:20:58.224 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:20:58.224 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:20:58.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:20:58.274 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:20:58.574 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:20:58.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:20:58.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:20:58.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start. 17-03-18 05:20:58.614 -07 000000608 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:20:58.614 -07 000000455 INF: FPGA: Recv CAMSNAP 17-03-18 05:20:58.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:20:58.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:20:58.694 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:20:58.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:20:58.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms. 17-03-18 05:20:58.714 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:20:58.714 -07 000000424 INF: Autofocus start 17-03-18 05:20:58.714 -07 000000424 INF: MeasureProfile start 17-03-18 05:20:58.714 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:20:58.724 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:20:58.724 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:20:58.724 -07 000000424 INF: MeasureProfile done 17-03-18 05:20:58.724 -07 000000424 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:20:58.724 -07 000000424 INF: Autofocus finished 17-03-18 05:20:58.924 -07 000000479 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:20:58.924 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:20:58.924 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.176451693493701. ---------- 17-03-18 05:20:58.924 -07 000000610 INF: Cycle 136 Tile 7 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:20:58.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37058, sync = True, waitForSettling = True) 17-03-18 05:20:58.934 -07 000000610 INF: Z Motor: Moving to -0.169641 mm, started at -0.176452 mm, distance = 6.81 um 17-03-18 05:20:58.934 -07 000000610 INF: FPGA: Xmit ZDACW 37058\n [Z Motor] 17-03-18 05:20:58.934 -07 000000467 INF: FPGA: Recv ZDACW 17-03-18 05:20:58.944 -07 000000610 INF: FPGA: 'ZDACW 37058' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:20:58.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:20:58.944 -07 000000579 INF: FPGA: Recv ZDACR 37058 17-03-18 05:20:58.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:58.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:20:59.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.104 -07 000000569 INF: FPGA: Recv ZSGSRD 35698 17-03-18 05:20:59.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:20:59.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.114 -07 000000581 INF: FPGA: Recv ZSGSRD 35703 17-03-18 05:20:59.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.124 -07 000000461 INF: FPGA: Recv ZSGSRD 35692 17-03-18 05:20:59.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.134 -07 000000479 INF: FPGA: Recv ZSGSRD 35694 17-03-18 05:20:59.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.144 -07 000000424 INF: FPGA: Recv ZSGSRD 35697 17-03-18 05:20:59.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.154 -07 000000569 INF: FPGA: Recv ZSGSRD 35703 17-03-18 05:20:59.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.164 -07 000000467 INF: FPGA: Recv ZSGSRD 35691 17-03-18 05:20:59.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.174 -07 000000480 INF: FPGA: Recv ZSGSRD 35691 17-03-18 05:20:59.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35697 17-03-18 05:20:59.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:20:59.194 -07 000000618 INF: FPGA: Recv ZSGSRD 35701 17-03-18 05:20:59.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:20:59.204 -07 000000569 INF: FPGA: Recv ZPIEZORD 31487 17-03-18 05:20:59.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:20:59.214 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.3 V. 17-03-18 05:20:59.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35697 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35697 (-168.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35691 (-168.7 uncal um), Max = 35703 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:20:59.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35697, posNoise = 6, negNoise = 6 17-03-18 05:20:59.214 -07 000000610 INF: Z Motor: After move to -0.169641, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:20:59.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:20:59.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:20:59.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:20:59.214 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:20:59.214 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:20:59.214 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:20:59.214 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:20:59.214 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:20:59.214 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:20:59.214 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:20:59.214 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:20:59.214 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:20:59.214 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:20:59.224 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:20:59.224 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:20:59.224 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:20:59.224 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:20:59.234 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 05:20:59.234 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:20:59.234 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 05:20:59.234 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:20:59.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37235 150\n [Camera] 17-03-18 05:20:59.434 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:20:59.874 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:20:59.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:20:59.874 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:20:59.884 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:20:59.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:20:59.884 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:20:59.884 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:20:59.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start. 17-03-18 05:21:00.004 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:00.004 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2487301960, 0x0, 391868352) start. 17-03-18 05:21:00.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37235 822 17-03-18 05:21:00.214 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:00.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 501 ms. 17-03-18 05:21:00.384 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms. 17-03-18 05:21:00.384 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:00.384 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:00.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2487301960, 0x0, 391868352) end. Duration was 387 ms. 17-03-18 05:21:00.384 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 05:21:00.384 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:00.394 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:00.394 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms. 17-03-18 05:21:00.394 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms. 17-03-18 05:21:00.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:00.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:00.434 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:00.434 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:00.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:00.434 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:00.434 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:00.434 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 576162112, 0x0, 391868352) start. 17-03-18 05:21:00.444 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:00.444 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 05:21:00.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:00.624 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:00.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37235 150' command took 2 ms to send, 1372 ms to get response, and 1382 ms overall 17-03-18 05:21:00.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:00.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169648452835576. ------ 17-03-18 05:21:00.624 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:00.624 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17640 mm 17-03-18 05:21:00.624 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:00.634 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:00.634 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:00.634 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:00.634 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38536, sync = True, waitForSettling = False) 17-03-18 05:21:00.634 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-18 05:21:00.634 -07 000000626 INF: Z Motor: Moving to -0.176407 mm, started at -0.169648 mm, distance = -6.76 um 17-03-18 05:21:00.634 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm 17-03-18 05:21:00.644 -07 000000626 INF: FPGA: Xmit ZDACW 38536\n [Z Motor] 17-03-18 05:21:00.644 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:21:00.654 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:00.654 -07 000000626 INF: FPGA: 'ZDACW 38536' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 05:21:00.654 -07 000000581 INF: FPGA: Recv YRDPOS 132870 17-03-18 05:21:00.664 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-18 05:21:00.664 -07 000000579 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:00.664 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:00.664 -07 000000579 INF: Y Motor: Moving 1351 steps-31 17-03-18 05:21:00.664 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:00.664 -07 000000467 INF: FPGA: Recv ZDACR 38536 17-03-18 05:21:00.674 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:21:00.674 -07 000000626 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-18 05:21:00.674 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:00.834 -07 000000424 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:00.834 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-18 05:21:00.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 576162112, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 05:21:00.834 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 05:21:00.834 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:00.844 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 05:21:00.844 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 05:21:00.844 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:00.844 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:00.844 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-18 05:21:00.844 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:00.854 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 05:21:01.044 -07 000000608 INF: FPGA: Recv YMVTILE 17-03-18 05:21:01.044 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 05:21:01.094 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:01.094 -07 000000480 INF: FPGA: Recv YRDPOS 134580 17-03-18 05:21:01.104 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:01.104 -07 000000579 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:01.104 -07 000000579 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 05:21:01.104 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec 17-03-18 05:21:01.674 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.975845, 17-03-18 05:21:01.754 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:02.054 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:02.054 -07 000000569 INF: FPGA: Recv YRDPOS 134580 17-03-18 05:21:02.064 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:02.064 -07 000000579 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:02.094 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:02.094 -07 000000579 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:02.094 -07 000000579 INF: Y Motor: Moved to 65.7129 after 1463 ms (table move) 17-03-18 05:21:02.104 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176407 mm (DAC = 38536) 17-03-18 05:21:02.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.104 -07 000000569 INF: FPGA: Recv ZSGSRD 36748 17-03-18 05:21:02.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:02.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.114 -07 000000424 INF: FPGA: Recv ZSGSRD 36744 17-03-18 05:21:02.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36740 17-03-18 05:21:02.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.134 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.134 -07 000000608 INF: FPGA: Recv ZSGSRD 36745 17-03-18 05:21:02.144 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.144 -07 000000501 INF: FPGA: Recv ZSGSRD 36750 17-03-18 05:21:02.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.154 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.154 -07 000000479 INF: FPGA: Recv ZSGSRD 36751 17-03-18 05:21:02.164 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.164 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.164 -07 000000512 INF: FPGA: Recv ZSGSRD 36738 17-03-18 05:21:02.174 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.174 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.174 -07 000000626 INF: FPGA: Recv ZSGSRD 36756 17-03-18 05:21:02.184 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.184 -07 000000382 INF: FPGA: Recv ZSGSRD 36751 17-03-18 05:21:02.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.194 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:02.194 -07 000000581 INF: FPGA: Recv ZSGSRD 36745 17-03-18 05:21:02.204 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.204 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:02.204 -07 000000618 INF: FPGA: Recv ZPIEZORD 32905 17-03-18 05:21:02.214 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:02.214 -07 000000455 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.5 V. 17-03-18 05:21:02.214 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36747 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36746 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36738 (-175.4 uncal um), Max = 36756 (-175.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 05:21:02.214 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36747, posNoise = 9, negNoise = 9 17-03-18 05:21:02.214 -07 000000455 INF: Z Motor: After move to -0.176407, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:02.214 -07 000000455 INF: Z Motor: Settle wait time = 1467 ms, measure time = 109 ms (allowed 150 ms), total time = 1576 ms 17-03-18 05:21:02.214 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:02.264 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms 17-03-18 05:21:02.264 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:02.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:02.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:02.264 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:02.264 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:02.264 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:02.264 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:02.264 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:02.264 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:02.274 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:02.274 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:02.274 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:02.284 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:21:02.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:02.324 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:02.624 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:02.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:02.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:02.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start. 17-03-18 05:21:02.664 -07 000000512 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:02.664 -07 000000467 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:02.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 05:21:02.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:21:02.744 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:02.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:02.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:21:02.764 -07 000000569 INF: Autofocus start 17-03-18 05:21:02.764 -07 000000569 INF: MeasureProfile start 17-03-18 05:21:02.764 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:02.764 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:02.774 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:02.774 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:02.774 -07 000000569 INF: MeasureProfile done 17-03-18 05:21:02.774 -07 000000569 INF: X=-48 Z correction [um]=-0.3191189 17-03-18 05:21:02.774 -07 000000569 INF: Autofocus finished 17-03-18 05:21:02.974 -07 000000626 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:02.974 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:02.974 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.176393875584425. ---------- 17-03-18 05:21:02.984 -07 000000610 INF: Cycle 136 Tile 8 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:02.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36979, sync = True, waitForSettling = True) 17-03-18 05:21:02.984 -07 000000610 INF: Z Motor: Moving to -0.169279 mm, started at -0.176394 mm, distance = 7.11 um 17-03-18 05:21:02.984 -07 000000610 INF: FPGA: Xmit ZDACW 36979\n [Z Motor] 17-03-18 05:21:02.984 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 05:21:02.994 -07 000000610 INF: FPGA: 'ZDACW 36979' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:02.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:02.994 -07 000000512 INF: FPGA: Recv ZDACR 36979 17-03-18 05:21:03.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:03.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35636 17-03-18 05:21:03.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:03.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.164 -07 000000461 INF: FPGA: Recv ZSGSRD 35635 17-03-18 05:21:03.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.174 -07 000000502 INF: FPGA: Recv ZSGSRD 35640 17-03-18 05:21:03.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35640 17-03-18 05:21:03.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.194 -07 000000480 INF: FPGA: Recv ZSGSRD 35634 17-03-18 05:21:03.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.204 -07 000000474 INF: FPGA: Recv ZSGSRD 35638 17-03-18 05:21:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35645 17-03-18 05:21:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.224 -07 000000479 INF: FPGA: Recv ZSGSRD 35639 17-03-18 05:21:03.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.234 -07 000000455 INF: FPGA: Recv ZSGSRD 35638 17-03-18 05:21:03.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:03.244 -07 000000480 INF: FPGA: Recv ZSGSRD 35641 17-03-18 05:21:03.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:03.254 -07 000000502 INF: FPGA: Recv ZPIEZORD 31410 17-03-18 05:21:03.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:03.264 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.3 V. 17-03-18 05:21:03.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35639 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35638 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35634 (-168.4 uncal um), Max = 35645 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:03.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35639, posNoise = 6, negNoise = 5 17-03-18 05:21:03.264 -07 000000610 INF: Z Motor: After move to -0.169279, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:03.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:03.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:03.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:03.264 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:03.264 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:03.264 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:03.264 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:03.264 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:03.264 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:03.264 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:21:03.264 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:03.264 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 05:21:03.264 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:03.274 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:03.274 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:03.274 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:03.274 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:03.284 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:21:03.284 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:21:03.284 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:21:03.284 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:21:03.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37155 150\n [Camera] 17-03-18 05:21:03.484 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:03.924 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:03.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:03.924 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:03.924 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:03.924 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1099155104, 0x0, 391868352) start. 17-03-18 05:21:03.924 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:03.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:03.924 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:03.924 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:03.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1134577368, 0x0, 418435064) start. 17-03-18 05:21:04.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37155 822 17-03-18 05:21:04.264 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:04.304 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1134577368, 0x0, 418435064) end. Duration was 382 ms. 17-03-18 05:21:04.304 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 05:21:04.304 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:04.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1099155104, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 05:21:04.304 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 05:21:04.304 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:04.314 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:04.314 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:04.314 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 05:21:04.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 05:21:04.474 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:04.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:04.474 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:04.474 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:04.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1169999632, 0x0, 391868352) start. 17-03-18 05:21:04.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:04.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:04.474 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:04.474 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:04.474 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 05:21:04.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1376 17-03-18 05:21:04.664 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:04.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37155 150' command took 2 ms to send, 1377 ms to get response, and 1383 ms overall 17-03-18 05:21:04.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:04.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169275848531354. ------ 17-03-18 05:21:04.674 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17574 mm 17-03-18 05:21:04.674 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:04.674 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:04.674 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-18 05:21:04.674 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm 17-03-18 05:21:04.674 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38391, sync = True, waitForSettling = False) 17-03-18 05:21:04.674 -07 000000467 INF: Z Motor: Moving to -0.175743 mm, started at -0.169276 mm, distance = -6.47 um 17-03-18 05:21:04.674 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:04.684 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:04.684 -07 000000467 INF: FPGA: Xmit ZDACW 38391\n [Z Motor] 17-03-18 05:21:04.684 -07 000000501 INF: FPGA: Recv ZDACW 17-03-18 05:21:04.694 -07 000000467 INF: FPGA: 'ZDACW 38391' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 05:21:04.694 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:04.694 -07 000000479 INF: FPGA: Recv ZDACR 38391 17-03-18 05:21:04.704 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:04.704 -07 000000467 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet)) 17-03-18 05:21:04.704 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:04.704 -07 000000626 INF: FPGA: Recv YRDPOS 134580 17-03-18 05:21:04.714 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:04.714 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall 17-03-18 05:21:04.714 -07 000000424 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:04.714 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:04.714 -07 000000424 INF: Y Motor: Moving 1344 steps-20 17-03-18 05:21:04.724 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:04.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 05:21:04.854 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-18 05:21:04.854 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:04.864 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:04.864 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1169999632, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 05:21:04.864 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 05:21:04.864 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:04.864 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 05:21:04.874 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:21:04.874 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 05:21:04.914 -07 000000579 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:04.914 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 233 ms overall 17-03-18 05:21:05.094 -07 000000618 INF: FPGA: Recv YMVTILE 17-03-18 05:21:05.094 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 05:21:05.144 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:05.154 -07 000000447 INF: FPGA: Recv YRDPOS 136269 17-03-18 05:21:05.154 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 05:21:05.154 -07 000000424 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:05.154 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 05:21:05.154 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec 17-03-18 05:21:06.104 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:06.104 -07 000000618 INF: FPGA: Recv YRDPOS 136269 17-03-18 05:21:06.114 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.114 -07 000000424 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:06.144 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:06.144 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:06.144 -07 000000424 INF: Y Motor: Moved to 66.5376 after 1465 ms (table move) 17-03-18 05:21:06.144 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175743 mm (DAC = 38391) 17-03-18 05:21:06.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.144 -07 000000569 INF: FPGA: Recv ZSGSRD 36644 17-03-18 05:21:06.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 05:21:06.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.164 -07 000000474 INF: FPGA: Recv ZSGSRD 36637 17-03-18 05:21:06.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:21:06.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.174 -07 000000447 INF: FPGA: Recv ZSGSRD 36642 17-03-18 05:21:06.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.184 -07 000000479 INF: FPGA: Recv ZSGSRD 36647 17-03-18 05:21:06.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.194 -07 000000512 INF: FPGA: Recv ZSGSRD 36646 17-03-18 05:21:06.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.204 -07 000000626 INF: FPGA: Recv ZSGSRD 36646 17-03-18 05:21:06.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.214 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.214 -07 000000382 INF: FPGA: Recv ZSGSRD 36647 17-03-18 05:21:06.224 -07 000000625 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.224 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.224 -07 000000579 INF: FPGA: Recv ZSGSRD 36643 17-03-18 05:21:06.234 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.234 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36651 17-03-18 05:21:06.244 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.244 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:06.244 -07 000000480 INF: FPGA: Recv ZSGSRD 36650 17-03-18 05:21:06.254 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.254 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:06.254 -07 000000424 INF: FPGA: Recv ZPIEZORD 32772 17-03-18 05:21:06.264 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:06.264 -07 000000625 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.6 V. 17-03-18 05:21:06.264 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36645 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36646 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36637 (-174.8 uncal um), Max = 36651 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:21:06.264 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36645, posNoise = 6, negNoise = 8 17-03-18 05:21:06.264 -07 000000625 INF: Z Motor: After move to -0.175743, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:06.264 -07 000000625 INF: Z Motor: Settle wait time = 1468 ms, measure time = 114 ms (allowed 150 ms), total time = 1582 ms 17-03-18 05:21:06.264 -07 000000625 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:06.304 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms 17-03-18 05:21:06.304 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:06.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:06.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:06.304 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:06.304 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:06.304 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:06.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:06.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:06.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:06.314 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:06.314 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:06.314 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:06.314 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:21:06.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:06.364 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 42 17-03-18 05:21:06.664 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 343 17-03-18 05:21:06.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343 17-03-18 05:21:06.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:06.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539599288, 0x0, 559484976) start. 17-03-18 05:21:06.704 -07 000000502 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:06.704 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:06.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-18 05:21:06.754 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:06.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539599288, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:21:06.784 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:06.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:06.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:21:06.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:06.904 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:06.904 -07 000000424 INF: Autofocus start 17-03-18 05:21:06.904 -07 000000424 INF: MeasureProfile start 17-03-18 05:21:06.904 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:06.914 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:06.914 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:06.924 -07 000000424 INF: MeasureProfile done 17-03-18 05:21:06.924 -07 000000424 INF: X=32 Z correction [um]=0.09220707 17-03-18 05:21:06.924 -07 000000424 INF: Autofocus finished 17-03-18 05:21:07.034 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.004458, 17-03-18 05:21:07.114 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:07.114 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:07.114 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175738605945965. ---------- 17-03-18 05:21:07.114 -07 000000610 INF: Cycle 136 Tile 9 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:07.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36924, sync = True, waitForSettling = True) 17-03-18 05:21:07.124 -07 000000610 INF: Z Motor: Moving to -0.169027 mm, started at -0.175739 mm, distance = 6.71 um 17-03-18 05:21:07.124 -07 000000610 INF: FPGA: Xmit ZDACW 36924\n [Z Motor] 17-03-18 05:21:07.124 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:21:07.134 -07 000000610 INF: FPGA: 'ZDACW 36924' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:07.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:07.134 -07 000000474 INF: FPGA: Recv ZDACR 36924 17-03-18 05:21:07.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:07.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.294 -07 000000606 INF: FPGA: Recv ZSGSRD 35600 17-03-18 05:21:07.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35606 17-03-18 05:21:07.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.314 -07 000000455 INF: FPGA: Recv ZSGSRD 35603 17-03-18 05:21:07.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.324 -07 000000625 INF: FPGA: Recv ZSGSRD 35597 17-03-18 05:21:07.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.334 -07 000000382 INF: FPGA: Recv ZSGSRD 35603 17-03-18 05:21:07.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.344 -07 000000480 INF: FPGA: Recv ZSGSRD 35606 17-03-18 05:21:07.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.354 -07 000000608 INF: FPGA: Recv ZSGSRD 35605 17-03-18 05:21:07.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.364 -07 000000618 INF: FPGA: Recv ZSGSRD 35597 17-03-18 05:21:07.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.374 -07 000000467 INF: FPGA: Recv ZSGSRD 35599 17-03-18 05:21:07.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:07.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35601 17-03-18 05:21:07.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:07.394 -07 000000461 INF: FPGA: Recv ZPIEZORD 31345 17-03-18 05:21:07.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:07.404 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.4 V. 17-03-18 05:21:07.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35602 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35597 (-168.1 uncal um), Max = 35606 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:07.404 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35602, posNoise = 4, negNoise = 5 17-03-18 05:21:07.404 -07 000000610 INF: Z Motor: After move to -0.169027, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:07.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:07.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:07.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:07.404 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:07.404 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:07.404 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:07.404 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:07.404 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:07.404 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:07.404 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:07.404 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:07.404 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:07.404 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:07.414 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:07.414 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:07.414 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:07.414 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:07.424 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 05:21:07.424 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:21:07.424 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 05:21:07.424 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:21:07.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37100 150\n [Camera] 17-03-18 05:21:07.634 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:08.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 631 17-03-18 05:21:08.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 631 17-03-18 05:21:08.074 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:08.074 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:08.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start. 17-03-18 05:21:08.074 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 631 17-03-18 05:21:08.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 631 17-03-18 05:21:08.074 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:08.074 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:08.074 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start. 17-03-18 05:21:08.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37100 822 17-03-18 05:21:08.414 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:08.454 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 379 ms. 17-03-18 05:21:08.454 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms. 17-03-18 05:21:08.454 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:08.454 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 05:21:08.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:08.454 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 05:21:08.454 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:08.464 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:08.464 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 05:21:08.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 05:21:08.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:08.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:08.624 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:08.624 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:08.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:21:08.624 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:08.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:08.624 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:08.624 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:08.624 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:21:08.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:21:08.814 -07 000000626 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:08.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37100 150' command took 2 ms to send, 1373 ms to get response, and 1382 ms overall 17-03-18 05:21:08.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:08.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.169038152682109. ------ 17-03-18 05:21:08.814 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17577 mm 17-03-18 05:21:08.814 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:08.814 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:08.824 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:08.824 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-18 05:21:08.824 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38396, sync = True, waitForSettling = False) 17-03-18 05:21:08.824 -07 000000479 INF: Z Motor: Moving to -0.175766 mm, started at -0.169038 mm, distance = -6.73 um 17-03-18 05:21:08.824 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-18 05:21:08.824 -07 000000618 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm 17-03-18 05:21:08.824 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:08.834 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:08.834 -07 000000579 INF: FPGA: Recv YRDPOS 136270 17-03-18 05:21:08.844 -07 000000479 INF: FPGA: Xmit ZDACW 38396\n [Z Motor] 17-03-18 05:21:08.844 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:21:08.844 -07 000000618 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:08.844 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 05:21:08.844 -07 000000618 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:08.844 -07 000000618 INF: Y Motor: Moving 1351 steps-31 17-03-18 05:21:08.854 -07 000000479 INF: FPGA: 'ZDACW 38396' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 05:21:08.854 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:08.854 -07 000000447 INF: FPGA: Recv ZDACR 38396 17-03-18 05:21:08.864 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:08.864 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:08.864 -07 000000479 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-18 05:21:09.024 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:09.024 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall 17-03-18 05:21:09.024 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms. 17-03-18 05:21:09.024 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 05:21:09.024 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:09.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms. 17-03-18 05:21:09.034 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-18 05:21:09.034 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:09.034 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:09.034 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:21:09.034 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-18 05:21:09.044 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-18 05:21:09.234 -07 000000625 INF: FPGA: Recv YMVTILE 17-03-18 05:21:09.234 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 05:21:09.284 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:09.294 -07 000000626 INF: FPGA: Recv YRDPOS 137975 17-03-18 05:21:09.294 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:09.294 -07 000000618 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:09.294 -07 000000618 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm) 17-03-18 05:21:09.294 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec 17-03-18 05:21:10.244 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:10.244 -07 000000474 INF: FPGA: Recv YRDPOS 137975 17-03-18 05:21:10.254 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:10.254 -07 000000618 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:10.284 -07 000000618 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:10.284 -07 000000618 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:10.284 -07 000000618 INF: Y Motor: Moved to 67.3706 after 1458 ms (table move) 17-03-18 05:21:10.284 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175766 mm (DAC = 38396) 17-03-18 05:21:10.284 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.284 -07 000000480 INF: FPGA: Recv ZSGSRD 36659 17-03-18 05:21:10.294 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:10.294 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.294 -07 000000467 INF: FPGA: Recv ZSGSRD 36652 17-03-18 05:21:10.304 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.304 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.304 -07 000000382 INF: FPGA: Recv ZSGSRD 36644 17-03-18 05:21:10.314 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.314 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.314 -07 000000447 INF: FPGA: Recv ZSGSRD 36646 17-03-18 05:21:10.324 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.324 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.324 -07 000000618 INF: FPGA: Recv ZSGSRD 36644 17-03-18 05:21:10.334 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.334 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.334 -07 000000502 INF: FPGA: Recv ZSGSRD 36647 17-03-18 05:21:10.344 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.344 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.344 -07 000000625 INF: FPGA: Recv ZSGSRD 36655 17-03-18 05:21:10.354 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.354 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.354 -07 000000382 INF: FPGA: Recv ZSGSRD 36653 17-03-18 05:21:10.364 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.364 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36654 17-03-18 05:21:10.374 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.374 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:10.374 -07 000000618 INF: FPGA: Recv ZSGSRD 36658 17-03-18 05:21:10.384 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.384 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:10.384 -07 000000608 INF: FPGA: Recv ZPIEZORD 32789 17-03-18 05:21:10.394 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:10.394 -07 000000581 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.5 V. 17-03-18 05:21:10.394 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36651 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36644 (-174.8 uncal um), Max = 36659 (-174.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:21:10.394 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36651, posNoise = 8, negNoise = 7 17-03-18 05:21:10.394 -07 000000581 INF: Z Motor: After move to -0.175766, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:10.394 -07 000000581 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms 17-03-18 05:21:10.394 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:10.444 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms 17-03-18 05:21:10.444 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:10.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:10.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:10.444 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:10.444 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:10.444 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:10.444 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:10.444 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:10.444 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:10.454 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:10.454 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:10.464 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:10.464 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 05:21:10.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:10.514 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:10.814 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:10.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:10.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:10.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start. 17-03-18 05:21:10.844 -07 000000467 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:10.854 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:10.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 389 ms overall 17-03-18 05:21:10.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:21:10.924 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:10.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:10.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:21:10.954 -07 000000424 INF: Autofocus start 17-03-18 05:21:10.954 -07 000000424 INF: MeasureProfile start 17-03-18 05:21:10.954 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:10.954 -07 000000479 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:10.964 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:10.964 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:10.964 -07 000000424 INF: MeasureProfile done 17-03-18 05:21:10.964 -07 000000424 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:21:10.964 -07 000000424 INF: Autofocus finished 17-03-18 05:21:11.164 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:11.164 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:11.164 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175777151218816. ---------- 17-03-18 05:21:11.174 -07 000000610 INF: Cycle 136 Tile 10 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:11.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36911, sync = True, waitForSettling = True) 17-03-18 05:21:11.174 -07 000000610 INF: Z Motor: Moving to -0.168968 mm, started at -0.175777 mm, distance = 6.81 um 17-03-18 05:21:11.174 -07 000000610 INF: FPGA: Xmit ZDACW 36911\n [Z Motor] 17-03-18 05:21:11.174 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:21:11.184 -07 000000610 INF: FPGA: 'ZDACW 36911' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:11.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:11.184 -07 000000581 INF: FPGA: Recv ZDACR 36911 17-03-18 05:21:11.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:11.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.344 -07 000000467 INF: FPGA: Recv ZSGSRD 35591 17-03-18 05:21:11.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:11.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.354 -07 000000626 INF: FPGA: Recv ZSGSRD 35596 17-03-18 05:21:11.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.364 -07 000000480 INF: FPGA: Recv ZSGSRD 35590 17-03-18 05:21:11.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.374 -07 000000501 INF: FPGA: Recv ZSGSRD 35587 17-03-18 05:21:11.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.384 -07 000000606 INF: FPGA: Recv ZSGSRD 35597 17-03-18 05:21:11.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.394 -07 000000618 INF: FPGA: Recv ZSGSRD 35592 17-03-18 05:21:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.404 -07 000000608 INF: FPGA: Recv ZSGSRD 35593 17-03-18 05:21:11.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.414 -07 000000479 INF: FPGA: Recv ZSGSRD 35587 17-03-18 05:21:11.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.424 -07 000000455 INF: FPGA: Recv ZSGSRD 35594 17-03-18 05:21:11.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:11.434 -07 000000625 INF: FPGA: Recv ZSGSRD 35596 17-03-18 05:21:11.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:11.444 -07 000000618 INF: FPGA: Recv ZPIEZORD 31337 17-03-18 05:21:11.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:11.454 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.4 V. 17-03-18 05:21:11.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35587 (-168.1 uncal um), Max = 35597 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:11.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 5, negNoise = 5 17-03-18 05:21:11.454 -07 000000610 INF: Z Motor: After move to -0.168968, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:11.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:21:11.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:11.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:11.454 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:11.454 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:11.454 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:11.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:11.454 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:11.454 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:11.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:11.454 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:11.454 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:21:11.454 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:11.454 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:11.454 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:11.464 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:21:11.464 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:11.474 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms. 17-03-18 05:21:11.474 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-18 05:21:11.484 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 19 ms. 17-03-18 05:21:11.484 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-18 05:21:11.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 37088 150\n [Camera] 17-03-18 05:21:11.684 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:11.754 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:12.114 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:12.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:12.124 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:12.124 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:12.124 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start. 17-03-18 05:21:12.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:12.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:12.124 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:12.124 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:12.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:21:12.314 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37088 822 17-03-18 05:21:12.394 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.99219, 17-03-18 05:21:12.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:12.504 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 386 ms. 17-03-18 05:21:12.504 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 05:21:12.504 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:12.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 05:21:12.504 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 05:21:12.504 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:12.514 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:12.514 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 05:21:12.514 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:12.524 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 05:21:12.674 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:12.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:12.674 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:12.674 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:12.674 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-18 05:21:12.674 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:12.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:12.674 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:12.674 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:12.674 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start. 17-03-18 05:21:12.864 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:21:12.864 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:12.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 37088 150' command took 2 ms to send, 1374 ms to get response, and 1382 ms overall 17-03-18 05:21:12.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:12.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168973910560691. ------ 17-03-18 05:21:12.874 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17526 mm 17-03-18 05:21:12.874 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:12.874 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:12.874 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-18 05:21:12.874 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm 17-03-18 05:21:12.874 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38286, sync = True, waitForSettling = False) 17-03-18 05:21:12.874 -07 000000461 INF: Z Motor: Moving to -0.175262 mm, started at -0.168974 mm, distance = -6.29 um 17-03-18 05:21:12.874 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:12.884 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:12.884 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:12.884 -07 000000625 INF: FPGA: Recv YRDPOS 137976 17-03-18 05:21:12.894 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 05:21:12.894 -07 000000502 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:12.894 -07 000000461 INF: FPGA: Xmit ZDACW 38286\n [Z Motor] 17-03-18 05:21:12.894 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 05:21:12.894 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:12.894 -07 000000502 INF: Y Motor: Moving 1346 steps-25 17-03-18 05:21:12.904 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:12.904 -07 000000461 INF: FPGA: 'ZDACW 38286' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-18 05:21:12.914 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:12.924 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:12.924 -07 000000626 INF: FPGA: Recv ZDACR 38286 17-03-18 05:21:12.934 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:12.934 -07 000000461 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet)) 17-03-18 05:21:13.074 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms. 17-03-18 05:21:13.074 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:21:13.074 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:13.074 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 402 ms. 17-03-18 05:21:13.074 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:21:13.074 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:13.084 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:13.084 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:21:13.084 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-18 05:21:13.094 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 05:21:13.104 -07 000000512 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:13.104 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:21:13.284 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-18 05:21:13.284 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-18 05:21:13.344 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:13.344 -07 000000424 INF: FPGA: Recv YRDPOS 139681 17-03-18 05:21:13.354 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:13.354 -07 000000502 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:13.354 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-18 05:21:13.354 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.842 mm, average velocity = 2.148 mm/sec 17-03-18 05:21:14.304 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:14.304 -07 000000474 INF: FPGA: Recv YRDPOS 139681 17-03-18 05:21:14.314 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:14.314 -07 000000502 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:14.344 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:14.344 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:14.344 -07 000000502 INF: Y Motor: Moved to 68.2036 after 1466 ms (table move) 17-03-18 05:21:14.344 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175262 mm (DAC = 38286) 17-03-18 05:21:14.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.344 -07 000000581 INF: FPGA: Recv ZSGSRD 36572 17-03-18 05:21:14.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:14.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.354 -07 000000626 INF: FPGA: Recv ZSGSRD 36570 17-03-18 05:21:14.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.364 -07 000000474 INF: FPGA: Recv ZSGSRD 36563 17-03-18 05:21:14.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.374 -07 000000455 INF: FPGA: Recv ZSGSRD 36573 17-03-18 05:21:14.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36566 17-03-18 05:21:14.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.394 -07 000000480 INF: FPGA: Recv ZSGSRD 36571 17-03-18 05:21:14.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.404 -07 000000606 INF: FPGA: Recv ZSGSRD 36577 17-03-18 05:21:14.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.414 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.414 -07 000000382 INF: FPGA: Recv ZSGSRD 36581 17-03-18 05:21:14.424 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.424 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.424 -07 000000467 INF: FPGA: Recv ZSGSRD 36575 17-03-18 05:21:14.434 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:14.434 -07 000000502 INF: FPGA: Recv ZSGSRD 36568 17-03-18 05:21:14.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.444 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:14.444 -07 000000579 INF: FPGA: Recv ZPIEZORD 32710 17-03-18 05:21:14.454 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:14.454 -07 000000501 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.5 V. 17-03-18 05:21:14.454 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36572 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36563 (-174.3 uncal um), Max = 36581 (-174.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 05:21:14.454 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 9, negNoise = 9 17-03-18 05:21:14.454 -07 000000501 INF: Z Motor: After move to -0.175262, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:14.454 -07 000000501 INF: Z Motor: Settle wait time = 1471 ms, measure time = 104 ms (allowed 150 ms), total time = 1575 ms 17-03-18 05:21:14.454 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:14.504 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms 17-03-18 05:21:14.504 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:14.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:14.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:14.504 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:14.504 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:14.504 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:14.504 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:14.504 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:14.504 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:14.514 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:14.514 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:14.514 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:21:14.514 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:21:14.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:14.564 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:14.864 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:14.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:14.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:14.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start. 17-03-18 05:21:14.904 -07 000000502 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:14.904 -07 000000467 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:14.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-18 05:21:14.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 117 ms. 17-03-18 05:21:14.984 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:14.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:14.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:21:15.004 -07 000000455 INF: Autofocus start 17-03-18 05:21:15.004 -07 000000455 INF: MeasureProfile start 17-03-18 05:21:15.004 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:15.004 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:15.014 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:15.014 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:15.014 -07 000000455 INF: MeasureProfile done 17-03-18 05:21:15.014 -07 000000455 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:21:15.014 -07 000000455 INF: Autofocus finished 17-03-18 05:21:15.214 -07 000000625 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:15.214 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:15.214 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.175269638459617. ---------- 17-03-18 05:21:15.224 -07 000000610 INF: Cycle 136 Tile 11 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:15.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36801, sync = True, waitForSettling = True) 17-03-18 05:21:15.224 -07 000000610 INF: Z Motor: Moving to -0.168464 mm, started at -0.175270 mm, distance = 6.81 um 17-03-18 05:21:15.224 -07 000000610 INF: FPGA: Xmit ZDACW 36801\n [Z Motor] 17-03-18 05:21:15.224 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 05:21:15.234 -07 000000610 INF: FPGA: 'ZDACW 36801' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:15.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:15.234 -07 000000467 INF: FPGA: Recv ZDACR 36801 17-03-18 05:21:15.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:15.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35515 17-03-18 05:21:15.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:15.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.404 -07 000000608 INF: FPGA: Recv ZSGSRD 35520 17-03-18 05:21:15.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35511 17-03-18 05:21:15.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.424 -07 000000512 INF: FPGA: Recv ZSGSRD 35516 17-03-18 05:21:15.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.434 -07 000000502 INF: FPGA: Recv ZSGSRD 35509 17-03-18 05:21:15.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.444 -07 000000625 INF: FPGA: Recv ZSGSRD 35519 17-03-18 05:21:15.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.454 -07 000000382 INF: FPGA: Recv ZSGSRD 35511 17-03-18 05:21:15.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35512 17-03-18 05:21:15.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.474 -07 000000618 INF: FPGA: Recv ZSGSRD 35517 17-03-18 05:21:15.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:15.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35513 17-03-18 05:21:15.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:15.494 -07 000000625 INF: FPGA: Recv ZPIEZORD 31285 17-03-18 05:21:15.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:15.504 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.615 V. Piezo Error = -9.3 V. 17-03-18 05:21:15.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35514 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35514 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35509 (-167.6 uncal um), Max = 35520 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:15.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35514, posNoise = 6, negNoise = 5 17-03-18 05:21:15.504 -07 000000610 INF: Z Motor: After move to -0.168464, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:15.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:15.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:15.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:15.504 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:15.504 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:15.504 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:15.504 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:15.504 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:15.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:15.504 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:15.504 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:15.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:15.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:15.514 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:15.514 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:15.514 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:15.514 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:15.524 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 05:21:15.524 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:21:15.524 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 05:21:15.524 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:21:15.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36978 150\n [Camera] 17-03-18 05:21:15.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:16.164 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:16.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:16.174 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:16.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:16.174 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:16.174 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:16.174 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:16.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-18 05:21:16.174 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:16.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-18 05:21:16.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36978 822 17-03-18 05:21:16.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:16.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms. 17-03-18 05:21:16.564 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 05:21:16.564 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:16.564 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:16.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 389 ms. 17-03-18 05:21:16.564 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 05:21:16.564 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:16.564 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:16.564 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:21:16.574 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 05:21:16.724 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:16.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:16.724 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:16.724 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:16.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start. 17-03-18 05:21:16.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:16.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:16.724 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:16.874 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:16.874 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:16.874 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 576162112, 0x0, 418435064) start. 17-03-18 05:21:16.914 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:21:16.914 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:16.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36978 150' command took 2 ms to send, 1372 ms to get response, and 1381 ms overall 17-03-18 05:21:16.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:16.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168472822013634. ------ 17-03-18 05:21:16.914 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:16.914 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17511 mm 17-03-18 05:21:16.914 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:16.914 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:16.924 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:16.924 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-18 05:21:16.924 -07 000000502 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm 17-03-18 05:21:16.924 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:16.924 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38254, sync = True, waitForSettling = False) 17-03-18 05:21:16.924 -07 000000606 INF: Z Motor: Moving to -0.175116 mm, started at -0.168473 mm, distance = -6.64 um 17-03-18 05:21:16.934 -07 000000606 INF: FPGA: Xmit ZDACW 38254\n [Z Motor] 17-03-18 05:21:16.934 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:21:16.944 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:16.944 -07 000000606 INF: FPGA: 'ZDACW 38254' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 05:21:16.944 -07 000000382 INF: FPGA: Recv YRDPOS 139681 17-03-18 05:21:16.954 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:16.954 -07 000000502 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:16.954 -07 000000502 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:16.954 -07 000000502 INF: Y Motor: Moving 1342 steps-18 17-03-18 05:21:16.954 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:16.954 -07 000000447 INF: FPGA: Recv ZDACR 38254 17-03-18 05:21:16.964 -07 000000606 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:21:16.964 -07 000000606 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-18 05:21:16.964 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:17.124 -07 000000474 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:17.124 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:17.134 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 414 ms. 17-03-18 05:21:17.134 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-18 05:21:17.134 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:17.144 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:21:17.144 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms. 17-03-18 05:21:17.254 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 576162112, 0x0, 418435064) end. Duration was 380 ms. 17-03-18 05:21:17.254 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-18 05:21:17.254 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:17.264 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:17.264 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 542 ms. 17-03-18 05:21:17.334 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 05:21:17.334 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall 17-03-18 05:21:17.384 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:17.394 -07 000000501 INF: FPGA: Recv YRDPOS 141365 17-03-18 05:21:17.394 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:21:17.394 -07 000000502 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:17.394 -07 000000502 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm) 17-03-18 05:21:17.394 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.179 mm/sec 17-03-18 05:21:17.754 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.988112, 17-03-18 05:21:18.344 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:18.344 -07 000000467 INF: FPGA: Recv YRDPOS 141365 17-03-18 05:21:18.354 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:18.354 -07 000000502 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:18.384 -07 000000502 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:18.384 -07 000000502 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:18.384 -07 000000502 INF: Y Motor: Moved to 69.0259 after 1460 ms (table move) 17-03-18 05:21:18.384 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175116 mm (DAC = 38254) 17-03-18 05:21:18.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.384 -07 000000625 INF: FPGA: Recv ZSGSRD 36556 17-03-18 05:21:18.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:18.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.394 -07 000000474 INF: FPGA: Recv ZSGSRD 36546 17-03-18 05:21:18.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.404 -07 000000467 INF: FPGA: Recv ZSGSRD 36543 17-03-18 05:21:18.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36545 17-03-18 05:21:18.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36550 17-03-18 05:21:18.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.434 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.434 -07 000000626 INF: FPGA: Recv ZSGSRD 36556 17-03-18 05:21:18.444 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.444 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.444 -07 000000382 INF: FPGA: Recv ZSGSRD 36550 17-03-18 05:21:18.454 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.454 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.454 -07 000000479 INF: FPGA: Recv ZSGSRD 36556 17-03-18 05:21:18.464 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.464 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.464 -07 000000424 INF: FPGA: Recv ZSGSRD 36555 17-03-18 05:21:18.474 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.474 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:18.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36547 17-03-18 05:21:18.484 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.484 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:18.484 -07 000000606 INF: FPGA: Recv ZPIEZORD 32702 17-03-18 05:21:18.494 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:18.494 -07 000000618 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.837 V. Piezo Error = -8.5 V. 17-03-18 05:21:18.494 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36550 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36550 (-174.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36543 (-174.2 uncal um), Max = 36556 (-174.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:21:18.494 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36550, posNoise = 6, negNoise = 7 17-03-18 05:21:18.494 -07 000000618 INF: Z Motor: After move to -0.175116, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:18.494 -07 000000618 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms 17-03-18 05:21:18.494 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:18.544 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms 17-03-18 05:21:18.544 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:18.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:18.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:18.544 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:18.544 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:18.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:18.544 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:18.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:18.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:18.554 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:18.554 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:18.564 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 05:21:18.564 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 05:21:18.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:18.614 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:18.914 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:18.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:18.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:18.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start. 17-03-18 05:21:18.954 -07 000000512 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:18.954 -07 000000467 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:18.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall 17-03-18 05:21:19.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:21:19.024 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:19.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:19.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:21:19.054 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:19.054 -07 000000424 INF: Autofocus start 17-03-18 05:21:19.054 -07 000000424 INF: MeasureProfile start 17-03-18 05:21:19.054 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:19.064 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:19.064 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:19.064 -07 000000424 INF: MeasureProfile done 17-03-18 05:21:19.064 -07 000000424 INF: X=-32 Z correction [um]=-0.2344 17-03-18 05:21:19.064 -07 000000424 INF: Autofocus finished 17-03-18 05:21:19.264 -07 000000479 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:19.264 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:19.264 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.175128305792498. ---------- 17-03-18 05:21:19.264 -07 000000610 INF: Cycle 136 Tile 12 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:19.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36715, sync = True, waitForSettling = True) 17-03-18 05:21:19.274 -07 000000610 INF: Z Motor: Moving to -0.168070 mm, started at -0.175128 mm, distance = 7.06 um 17-03-18 05:21:19.274 -07 000000610 INF: FPGA: Xmit ZDACW 36715\n [Z Motor] 17-03-18 05:21:19.274 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 05:21:19.284 -07 000000610 INF: FPGA: 'ZDACW 36715' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:19.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:19.284 -07 000000626 INF: FPGA: Recv ZDACR 36715 17-03-18 05:21:19.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:19.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35452 17-03-18 05:21:19.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:19.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.454 -07 000000447 INF: FPGA: Recv ZSGSRD 35454 17-03-18 05:21:19.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.464 -07 000000474 INF: FPGA: Recv ZSGSRD 35451 17-03-18 05:21:19.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.474 -07 000000625 INF: FPGA: Recv ZSGSRD 35457 17-03-18 05:21:19.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.484 -07 000000626 INF: FPGA: Recv ZSGSRD 35450 17-03-18 05:21:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35456 17-03-18 05:21:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.504 -07 000000608 INF: FPGA: Recv ZSGSRD 35456 17-03-18 05:21:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.514 -07 000000467 INF: FPGA: Recv ZSGSRD 35452 17-03-18 05:21:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.524 -07 000000501 INF: FPGA: Recv ZSGSRD 35458 17-03-18 05:21:19.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:19.534 -07 000000461 INF: FPGA: Recv ZSGSRD 35450 17-03-18 05:21:19.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:19.544 -07 000000581 INF: FPGA: Recv ZPIEZORD 31189 17-03-18 05:21:19.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:19.554 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.4 V. 17-03-18 05:21:19.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35454 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35453 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35450 (-167.2 uncal um), Max = 35458 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:21:19.554 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35454, posNoise = 4, negNoise = 4 17-03-18 05:21:19.554 -07 000000610 INF: Z Motor: After move to -0.168070, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:19.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:19.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:19.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:19.554 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:19.554 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:19.554 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:19.554 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:19.554 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:19.554 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:19.554 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:19.554 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:19.554 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:19.554 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:19.564 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:19.564 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:19.564 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:19.564 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:19.574 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 05:21:19.574 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 05:21:19.574 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 05:21:19.574 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:21:19.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36892 150\n [Camera] 17-03-18 05:21:19.774 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:20.214 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:20.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:20.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:20.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:20.214 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:20.214 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:20.224 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:20.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start. 17-03-18 05:21:20.224 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:20.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start. 17-03-18 05:21:20.404 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36892 822 17-03-18 05:21:20.554 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:20.604 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 05:21:20.604 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 05:21:20.604 -07 000000479 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:20.604 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:20.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 382 ms. 17-03-18 05:21:20.604 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 05:21:20.604 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:20.614 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:20.614 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:21:20.614 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 05:21:20.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:20.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:20.774 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:20.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:20.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:20.894 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:20.894 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:21:20.894 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:20.894 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:20.894 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start. 17-03-18 05:21:20.964 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:20.964 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:20.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36892 150' command took 2 ms to send, 1371 ms to get response, and 1382 ms overall 17-03-18 05:21:20.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:20.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168087369285128. ------ 17-03-18 05:21:20.964 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:20.964 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17448 mm 17-03-18 05:21:20.964 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:20.964 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-18 05:21:20.964 -07 000000479 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm 17-03-18 05:21:20.964 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38115, sync = True, waitForSettling = False) 17-03-18 05:21:20.964 -07 000000480 INF: Z Motor: Moving to -0.174479 mm, started at -0.168087 mm, distance = -6.39 um 17-03-18 05:21:20.974 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:20.974 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:20.974 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall 17-03-18 05:21:20.974 -07 000000502 INF: FPGA: Recv YRDPOS 141365 17-03-18 05:21:20.984 -07 000000480 INF: FPGA: Xmit ZDACW 38115\n [Z Motor] 17-03-18 05:21:20.984 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 05:21:20.984 -07 000000479 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:20.984 -07 000000479 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:20.984 -07 000000479 INF: Y Motor: Moving 1355 steps-34 17-03-18 05:21:20.984 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 05:21:20.994 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:20.994 -07 000000480 INF: FPGA: 'ZDACW 38115' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 05:21:21.004 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:21.014 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:21.014 -07 000000461 INF: FPGA: Recv ZDACR 38115 17-03-18 05:21:21.024 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:21.024 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet)) 17-03-18 05:21:21.194 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:21.194 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall 17-03-18 05:21:21.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 05:21:21.294 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:21:21.294 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:21.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 405 ms. 17-03-18 05:21:21.294 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 05:21:21.294 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:21.294 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:21.304 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:21.304 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms. 17-03-18 05:21:21.304 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 05:21:21.374 -07 000000461 INF: FPGA: Recv YMVTILE 17-03-18 05:21:21.374 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-18 05:21:21.424 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:21.434 -07 000000474 INF: FPGA: Recv YRDPOS 143077 17-03-18 05:21:21.434 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:21.434 -07 000000479 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:21.434 -07 000000479 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm) 17-03-18 05:21:21.434 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.144 mm/sec 17-03-18 05:21:21.754 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:21.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:22.384 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:22.384 -07 000000480 INF: FPGA: Recv YRDPOS 143077 17-03-18 05:21:22.394 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:22.394 -07 000000479 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:22.424 -07 000000479 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:22.424 -07 000000479 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:22.424 -07 000000479 INF: Y Motor: Moved to 69.8618 after 1452 ms (table move) 17-03-18 05:21:22.424 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174479 mm (DAC = 38115) 17-03-18 05:21:22.424 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.424 -07 000000618 INF: FPGA: Recv ZSGSRD 36455 17-03-18 05:21:22.434 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:22.434 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.434 -07 000000461 INF: FPGA: Recv ZSGSRD 36454 17-03-18 05:21:22.444 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.444 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.444 -07 000000512 INF: FPGA: Recv ZSGSRD 36446 17-03-18 05:21:22.454 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.454 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36447 17-03-18 05:21:22.464 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.464 -07 000000579 INF: FPGA: Recv ZSGSRD 36446 17-03-18 05:21:22.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.474 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.474 -07 000000479 INF: FPGA: Recv ZSGSRD 36454 17-03-18 05:21:22.484 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.484 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.484 -07 000000461 INF: FPGA: Recv ZSGSRD 36451 17-03-18 05:21:22.494 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.494 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.494 -07 000000480 INF: FPGA: Recv ZSGSRD 36450 17-03-18 05:21:22.504 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.504 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.504 -07 000000569 INF: FPGA: Recv ZSGSRD 36455 17-03-18 05:21:22.514 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.514 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:22.514 -07 000000626 INF: FPGA: Recv ZSGSRD 36450 17-03-18 05:21:22.524 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.524 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:22.524 -07 000000618 INF: FPGA: Recv ZPIEZORD 32555 17-03-18 05:21:22.534 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:22.534 -07 000000625 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.6 V. 17-03-18 05:21:22.534 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36451 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36450 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36446 (-173.6 uncal um), Max = 36455 (-173.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:22.534 -07 000000625 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36451, posNoise = 4, negNoise = 5 17-03-18 05:21:22.534 -07 000000625 INF: Z Motor: After move to -0.174479, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:22.534 -07 000000625 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms 17-03-18 05:21:22.534 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:22.584 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-18 05:21:22.584 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:22.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:22.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:22.584 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:22.584 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:22.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:22.584 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:22.594 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:22.594 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:22.594 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:22.594 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:22.594 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:21:22.594 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:21:22.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:22.644 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:22.944 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:22.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:22.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:22.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593037176, 0x0, 559484976) start. 17-03-18 05:21:22.984 -07 000000467 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:22.984 -07 000000479 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:22.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 05:21:23.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593037176, 0x0, 559484976) end. Duration was 113 ms. 17-03-18 05:21:23.064 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:23.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:23.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms. 17-03-18 05:21:23.084 -07 000000608 INF: Autofocus start 17-03-18 05:21:23.084 -07 000000608 INF: MeasureProfile start 17-03-18 05:21:23.084 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:23.084 -07 000000479 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:23.094 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:23.094 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:23.094 -07 000000608 INF: MeasureProfile done 17-03-18 05:21:23.094 -07 000000608 INF: X=-64 Z correction [um]=-0.4038377 17-03-18 05:21:23.094 -07 000000608 INF: Autofocus finished 17-03-18 05:21:23.114 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.990831, 17-03-18 05:21:23.294 -07 000000608 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:23.294 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:23.304 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174492308790464. ---------- 17-03-18 05:21:23.304 -07 000000610 INF: Cycle 136 Tile 13 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:23.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36540, sync = True, waitForSettling = True) 17-03-18 05:21:23.304 -07 000000610 INF: Z Motor: Moving to -0.167269 mm, started at -0.174492 mm, distance = 7.22 um 17-03-18 05:21:23.304 -07 000000610 INF: FPGA: Xmit ZDACW 36540\n [Z Motor] 17-03-18 05:21:23.304 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:21:23.314 -07 000000610 INF: FPGA: 'ZDACW 36540' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:21:23.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:23.314 -07 000000424 INF: FPGA: Recv ZDACR 36540 17-03-18 05:21:23.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:23.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.474 -07 000000501 INF: FPGA: Recv ZSGSRD 35328 17-03-18 05:21:23.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:23.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.484 -07 000000512 INF: FPGA: Recv ZSGSRD 35323 17-03-18 05:21:23.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.494 -07 000000447 INF: FPGA: Recv ZSGSRD 35331 17-03-18 05:21:23.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.504 -07 000000461 INF: FPGA: Recv ZSGSRD 35331 17-03-18 05:21:23.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.514 -07 000000618 INF: FPGA: Recv ZSGSRD 35331 17-03-18 05:21:23.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.524 -07 000000581 INF: FPGA: Recv ZSGSRD 35326 17-03-18 05:21:23.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.534 -07 000000512 INF: FPGA: Recv ZSGSRD 35320 17-03-18 05:21:23.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.544 -07 000000424 INF: FPGA: Recv ZSGSRD 35332 17-03-18 05:21:23.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.554 -07 000000474 INF: FPGA: Recv ZSGSRD 35320 17-03-18 05:21:23.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:23.564 -07 000000569 INF: FPGA: Recv ZSGSRD 35318 17-03-18 05:21:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:23.574 -07 000000625 INF: FPGA: Recv ZPIEZORD 31079 17-03-18 05:21:23.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:23.584 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.4 V. 17-03-18 05:21:23.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35326 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35327 (-166.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35318 (-166.3 uncal um), Max = 35332 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:21:23.584 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35326, posNoise = 6, negNoise = 8 17-03-18 05:21:23.584 -07 000000610 INF: Z Motor: After move to -0.167269, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:23.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 05:21:23.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:23.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:23.584 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:23.584 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:23.584 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:23.584 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:23.584 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:23.584 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:23.584 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:23.584 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:23.584 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:23.584 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:23.584 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:23.584 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:23.594 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:23.594 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:23.594 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:21:23.594 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms. 17-03-18 05:21:23.594 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:21:23.604 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:21:23.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36716 150\n [Camera] 17-03-18 05:21:23.804 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:24.244 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:24.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:24.244 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:24.244 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:24.244 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-18 05:21:24.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:24.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:24.244 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:24.244 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:24.244 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-18 05:21:24.434 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36716 822 17-03-18 05:21:24.584 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:24.634 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 391 ms. 17-03-18 05:21:24.634 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 05:21:24.634 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:24.634 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 389 ms. 17-03-18 05:21:24.634 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 05:21:24.634 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:24.634 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:24.634 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 05:21:24.634 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:24.644 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 05:21:24.794 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:24.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:24.794 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:24.794 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:24.794 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2564817056, 0x0, 391868352) start. 17-03-18 05:21:24.794 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:24.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:24.794 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:24.794 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:24.794 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start. 17-03-18 05:21:24.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:24.984 -07 000000467 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:24.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36716 150' command took 2 ms to send, 1375 ms to get response, and 1382 ms overall 17-03-18 05:21:24.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:24.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167265070130983. ------ 17-03-18 05:21:24.994 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17363 mm 17-03-18 05:21:24.994 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:24.994 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:24.994 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-18 05:21:24.994 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm 17-03-18 05:21:24.994 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37929, sync = True, waitForSettling = False) 17-03-18 05:21:24.994 -07 000000502 INF: Z Motor: Moving to -0.173628 mm, started at -0.167265 mm, distance = -6.36 um 17-03-18 05:21:24.994 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:25.004 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:25.004 -07 000000502 INF: FPGA: Xmit ZDACW 37929\n [Z Motor] 17-03-18 05:21:25.004 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:21:25.014 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:25.014 -07 000000502 INF: FPGA: 'ZDACW 37929' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 05:21:25.014 -07 000000455 INF: FPGA: Recv YRDPOS 143078 17-03-18 05:21:25.024 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:25.024 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 05:21:25.024 -07 000000382 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:25.024 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:25.024 -07 000000382 INF: Y Motor: Moving 1344 steps-22 17-03-18 05:21:25.034 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:25.034 -07 000000455 INF: FPGA: Recv ZDACR 37929 17-03-18 05:21:25.044 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:25.044 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:25.044 -07 000000502 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet)) 17-03-18 05:21:25.194 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2564817056, 0x0, 391868352) end. Duration was 402 ms. 17-03-18 05:21:25.194 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 05:21:25.194 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:25.194 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 05:21:25.194 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 05:21:25.194 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:25.204 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:25.204 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:21:25.204 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-18 05:21:25.204 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 05:21:25.224 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:25.224 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:21:25.414 -07 000000479 INF: FPGA: Recv YMVTILE 17-03-18 05:21:25.414 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 05:21:25.464 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:25.474 -07 000000606 INF: FPGA: Recv YRDPOS 144767 17-03-18 05:21:25.474 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall 17-03-18 05:21:25.474 -07 000000382 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:25.474 -07 000000382 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-18 05:21:25.474 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec 17-03-18 05:21:26.424 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:26.424 -07 000000501 INF: FPGA: Recv YRDPOS 144767 17-03-18 05:21:26.434 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.434 -07 000000382 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:26.464 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:26.464 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:26.464 -07 000000382 INF: Y Motor: Moved to 70.6870 after 1466 ms (table move) 17-03-18 05:21:26.464 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173628 mm (DAC = 37929) 17-03-18 05:21:26.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.464 -07 000000455 INF: FPGA: Recv ZSGSRD 36322 17-03-18 05:21:26.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:26.474 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.474 -07 000000474 INF: FPGA: Recv ZSGSRD 36315 17-03-18 05:21:26.484 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.484 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.484 -07 000000382 INF: FPGA: Recv ZSGSRD 36317 17-03-18 05:21:26.494 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.494 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.494 -07 000000625 INF: FPGA: Recv ZSGSRD 36315 17-03-18 05:21:26.504 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.504 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.504 -07 000000618 INF: FPGA: Recv ZSGSRD 36319 17-03-18 05:21:26.514 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.514 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.514 -07 000000608 INF: FPGA: Recv ZSGSRD 36313 17-03-18 05:21:26.524 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.524 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.524 -07 000000606 INF: FPGA: Recv ZSGSRD 36319 17-03-18 05:21:26.534 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.534 -07 000000579 INF: FPGA: Recv ZSGSRD 36321 17-03-18 05:21:26.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.544 -07 000000502 INF: FPGA: Recv ZSGSRD 36318 17-03-18 05:21:26.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.554 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:26.554 -07 000000625 INF: FPGA: Recv ZSGSRD 36322 17-03-18 05:21:26.564 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.564 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:26.564 -07 000000467 INF: FPGA: Recv ZPIEZORD 32392 17-03-18 05:21:26.574 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:26.574 -07 000000626 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.7 V. 17-03-18 05:21:26.574 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36318 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36318 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36313 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:26.574 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36318, posNoise = 4, negNoise = 5 17-03-18 05:21:26.574 -07 000000626 INF: Z Motor: After move to -0.173628, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:26.574 -07 000000626 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms 17-03-18 05:21:26.574 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:26.624 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms 17-03-18 05:21:26.624 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:26.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:26.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:26.624 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:26.624 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:26.624 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:26.624 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:26.624 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:26.624 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:26.634 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:26.634 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:26.634 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:26.634 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:21:26.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:26.684 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:26.754 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:26.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:26.984 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:26.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:26.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:27.094 -07 000000579 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:27.094 -07 000000579 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:27.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-18 05:21:27.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 449 ms to get response, and 458 ms overall 17-03-18 05:21:27.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:21:27.214 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:27.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:27.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 229 ms. 17-03-18 05:21:27.304 -07 000000625 INF: Autofocus start 17-03-18 05:21:27.304 -07 000000625 INF: MeasureProfile start 17-03-18 05:21:27.304 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:27.304 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:27.314 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:27.314 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:27.314 -07 000000625 INF: MeasureProfile done 17-03-18 05:21:27.314 -07 000000625 INF: X=32 Z correction [um]=0.09220707 17-03-18 05:21:27.314 -07 000000625 INF: Autofocus finished 17-03-18 05:21:27.514 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:27.514 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall 17-03-18 05:21:27.514 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.173637888575609. ---------- 17-03-18 05:21:27.514 -07 000000610 INF: Cycle 136 Tile 14 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:27.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36462, sync = True, waitForSettling = True) 17-03-18 05:21:27.524 -07 000000610 INF: Z Motor: Moving to -0.166912 mm, started at -0.173638 mm, distance = 6.73 um 17-03-18 05:21:27.524 -07 000000610 INF: FPGA: Xmit ZDACW 36462\n [Z Motor] 17-03-18 05:21:27.524 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:21:27.534 -07 000000610 INF: FPGA: 'ZDACW 36462' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:27.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:27.534 -07 000000618 INF: FPGA: Recv ZDACR 36462 17-03-18 05:21:27.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:27.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.694 -07 000000382 INF: FPGA: Recv ZSGSRD 35269 17-03-18 05:21:27.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:27.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.704 -07 000000512 INF: FPGA: Recv ZSGSRD 35273 17-03-18 05:21:27.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.714 -07 000000625 INF: FPGA: Recv ZSGSRD 35272 17-03-18 05:21:27.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.724 -07 000000467 INF: FPGA: Recv ZSGSRD 35272 17-03-18 05:21:27.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.734 -07 000000461 INF: FPGA: Recv ZSGSRD 35270 17-03-18 05:21:27.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.744 -07 000000382 INF: FPGA: Recv ZSGSRD 35274 17-03-18 05:21:27.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.754 -07 000000512 INF: FPGA: Recv ZSGSRD 35280 17-03-18 05:21:27.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.764 -07 000000608 INF: FPGA: Recv ZSGSRD 35272 17-03-18 05:21:27.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.774 -07 000000569 INF: FPGA: Recv ZSGSRD 35274 17-03-18 05:21:27.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:27.784 -07 000000447 INF: FPGA: Recv ZSGSRD 35271 17-03-18 05:21:27.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:27.794 -07 000000502 INF: FPGA: Recv ZPIEZORD 30969 17-03-18 05:21:27.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:27.804 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.5 V. 17-03-18 05:21:27.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35273 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35272 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35269 (-166.0 uncal um), Max = 35280 (-166.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:21:27.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35273, posNoise = 7, negNoise = 4 17-03-18 05:21:27.804 -07 000000610 INF: Z Motor: After move to -0.166912, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:27.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:27.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:27.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:27.804 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:27.804 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:27.804 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:27.804 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:27.804 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:27.804 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:27.804 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:27.804 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:27.804 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-18 05:21:27.804 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:27.804 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:27.804 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:27.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:21:27.814 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:27.814 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:21:27.814 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:21:27.814 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 05:21:27.814 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:21:27.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36639 150\n [Camera] 17-03-18 05:21:28.024 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:28.464 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:28.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:28.464 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:28.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:28.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:28.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:28.474 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.993549, 17-03-18 05:21:28.474 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:28.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:21:28.474 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:28.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start. 17-03-18 05:21:28.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36639 822 17-03-18 05:21:28.804 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973 17-03-18 05:21:28.864 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 05:21:28.864 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 05:21:28.864 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:28.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 05:21:28.864 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 05:21:28.864 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:28.874 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:28.874 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-18 05:21:28.874 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:28.874 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 05:21:29.014 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:29.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:29.014 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:29.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:29.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:29.014 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:29.134 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:29.134 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-18 05:21:29.134 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:29.134 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 05:21:29.204 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:21:29.204 -07 000000467 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:29.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36639 150' command took 2 ms to send, 1375 ms to get response, and 1382 ms overall 17-03-18 05:21:29.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:29.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68701171875, Z-Position -0.166924586887469. ------ 17-03-18 05:21:29.214 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:29.214 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17363 mm 17-03-18 05:21:29.214 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:29.214 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-18 05:21:29.214 -07 000000474 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm 17-03-18 05:21:29.214 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37930, sync = True, waitForSettling = False) 17-03-18 05:21:29.214 -07 000000581 INF: Z Motor: Moving to -0.173632 mm, started at -0.166925 mm, distance = -6.71 um 17-03-18 05:21:29.214 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:29.224 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:29.224 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:29.224 -07 000000579 INF: FPGA: Recv YRDPOS 144768 17-03-18 05:21:29.234 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:21:29.234 -07 000000581 INF: FPGA: Xmit ZDACW 37930\n [Z Motor] 17-03-18 05:21:29.234 -07 000000474 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:29.234 -07 000000501 INF: FPGA: Recv ZDACW 17-03-18 05:21:29.234 -07 000000474 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:29.234 -07 000000474 INF: Y Motor: Moving 1352 steps-32 17-03-18 05:21:29.244 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:29.244 -07 000000581 INF: FPGA: 'ZDACW 37930' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-18 05:21:29.254 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:29.264 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:29.264 -07 000000625 INF: FPGA: Recv ZDACR 37930 17-03-18 05:21:29.274 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:29.274 -07 000000581 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet)) 17-03-18 05:21:29.444 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:29.444 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:21:29.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 05:21:29.514 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 05:21:29.514 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:29.524 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:29.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 391 ms. 17-03-18 05:21:29.524 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 05:21:29.524 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:29.524 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms. 17-03-18 05:21:29.534 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:29.534 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms. 17-03-18 05:21:29.624 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-18 05:21:29.624 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall 17-03-18 05:21:29.674 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:29.684 -07 000000512 INF: FPGA: Recv YRDPOS 146468 17-03-18 05:21:29.684 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:29.684 -07 000000474 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:29.684 -07 000000474 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 05:21:29.684 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.846 mm, average velocity = 2.163 mm/sec 17-03-18 05:21:30.634 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:30.634 -07 000000625 INF: FPGA: Recv YRDPOS 146468 17-03-18 05:21:30.644 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.644 -07 000000474 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:30.674 -07 000000474 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:30.674 -07 000000474 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:30.674 -07 000000474 INF: Y Motor: Moved to 71.5176 after 1460 ms (table move) 17-03-18 05:21:30.674 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173632 mm (DAC = 37930) 17-03-18 05:21:30.674 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.684 -07 000000502 INF: FPGA: Recv ZSGSRD 36322 17-03-18 05:21:30.684 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 1 ms to get response, and 4 ms overall 17-03-18 05:21:30.684 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.684 -07 000000455 INF: FPGA: Recv ZSGSRD 36320 17-03-18 05:21:30.694 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:30.694 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.694 -07 000000474 INF: FPGA: Recv ZSGSRD 36320 17-03-18 05:21:30.704 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.704 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.704 -07 000000467 INF: FPGA: Recv ZSGSRD 36319 17-03-18 05:21:30.714 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.714 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.714 -07 000000512 INF: FPGA: Recv ZSGSRD 36320 17-03-18 05:21:30.724 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.724 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.724 -07 000000625 INF: FPGA: Recv ZSGSRD 36313 17-03-18 05:21:30.734 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.734 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.734 -07 000000455 INF: FPGA: Recv ZSGSRD 36315 17-03-18 05:21:30.744 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.744 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.744 -07 000000606 INF: FPGA: Recv ZSGSRD 36320 17-03-18 05:21:30.754 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.754 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36317 17-03-18 05:21:30.764 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.764 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:30.764 -07 000000579 INF: FPGA: Recv ZSGSRD 36318 17-03-18 05:21:30.774 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.774 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:30.774 -07 000000502 INF: FPGA: Recv ZPIEZORD 32413 17-03-18 05:21:30.784 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:30.784 -07 000000447 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.6 V. 17-03-18 05:21:30.784 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36318 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36320 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36313 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:30.784 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36318, posNoise = 4, negNoise = 5 17-03-18 05:21:30.784 -07 000000447 INF: Z Motor: After move to -0.173632, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:30.784 -07 000000447 INF: Z Motor: Settle wait time = 1463 ms, measure time = 103 ms (allowed 150 ms), total time = 1566 ms 17-03-18 05:21:30.784 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:30.834 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms 17-03-18 05:21:30.834 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:30.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:30.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:30.834 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:30.834 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:30.834 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:30.834 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:30.834 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:30.834 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:30.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:30.844 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:30.844 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:21:30.844 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:21:30.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:30.894 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:31.194 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:31.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:31.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:31.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597442480, 0x0, 559484976) start. 17-03-18 05:21:31.234 -07 000000618 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:31.234 -07 000000625 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:31.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:21:31.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597442480, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:21:31.314 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:31.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:31.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:21:31.334 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:31.334 -07 000000455 INF: Autofocus start 17-03-18 05:21:31.334 -07 000000455 INF: MeasureProfile start 17-03-18 05:21:31.334 -07 000000625 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:31.344 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:31.344 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:31.344 -07 000000455 INF: MeasureProfile done 17-03-18 05:21:31.344 -07 000000455 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:21:31.344 -07 000000455 INF: Autofocus finished 17-03-18 05:21:31.544 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:31.544 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:31.544 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173637888575609. ---------- 17-03-18 05:21:31.544 -07 000000610 INF: Cycle 136 Tile 15 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:31.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36445, sync = True, waitForSettling = True) 17-03-18 05:21:31.554 -07 000000610 INF: Z Motor: Moving to -0.166835 mm, started at -0.173638 mm, distance = 6.80 um 17-03-18 05:21:31.554 -07 000000610 INF: FPGA: Xmit ZDACW 36445\n [Z Motor] 17-03-18 05:21:31.554 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:21:31.564 -07 000000610 INF: FPGA: 'ZDACW 36445' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:31.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:31.564 -07 000000382 INF: FPGA: Recv ZDACR 36445 17-03-18 05:21:31.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:31.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.724 -07 000000502 INF: FPGA: Recv ZSGSRD 35258 17-03-18 05:21:31.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:31.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.734 -07 000000474 INF: FPGA: Recv ZSGSRD 35260 17-03-18 05:21:31.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.744 -07 000000467 INF: FPGA: Recv ZSGSRD 35255 17-03-18 05:21:31.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.754 -07 000000581 INF: FPGA: Recv ZSGSRD 35259 17-03-18 05:21:31.754 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:31.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:31.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.764 -07 000000467 INF: FPGA: Recv ZSGSRD 35261 17-03-18 05:21:31.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.774 -07 000000581 INF: FPGA: Recv ZSGSRD 35253 17-03-18 05:21:31.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.784 -07 000000461 INF: FPGA: Recv ZSGSRD 35260 17-03-18 05:21:31.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.794 -07 000000502 INF: FPGA: Recv ZSGSRD 35258 17-03-18 05:21:31.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.804 -07 000000474 INF: FPGA: Recv ZSGSRD 35259 17-03-18 05:21:31.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:31.814 -07 000000447 INF: FPGA: Recv ZSGSRD 35260 17-03-18 05:21:31.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:31.824 -07 000000606 INF: FPGA: Recv ZPIEZORD 30969 17-03-18 05:21:31.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:31.834 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.5 V. 17-03-18 05:21:31.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35258 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35259 (-166.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35253 (-165.9 uncal um), Max = 35261 (-166.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:31.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35258, posNoise = 3, negNoise = 5 17-03-18 05:21:31.834 -07 000000610 INF: Z Motor: After move to -0.166835, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:31.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:31.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:31.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:31.834 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:31.834 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:31.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:31.834 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:31.834 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:31.834 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:31.834 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:31.834 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:31.844 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:31.844 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:31.844 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:31.844 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:31.844 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:31.844 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:31.854 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:21:31.854 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:21:31.854 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:21:31.854 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:21:31.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36622 150\n [Camera] 17-03-18 05:21:32.054 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:32.494 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:32.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:32.494 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:32.494 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:32.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:32.494 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:32.494 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:32.504 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start. 17-03-18 05:21:32.504 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:32.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1103560408, 0x0, 391868352) start. 17-03-18 05:21:32.684 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36622 822 17-03-18 05:21:32.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:32.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1103560408, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 05:21:32.894 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 05:21:32.894 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:32.904 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:32.904 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 05:21:32.904 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 05:21:32.904 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:21:32.904 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:32.904 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:32.914 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 05:21:33.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:33.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:33.044 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:33.044 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:33.044 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-18 05:21:33.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:33.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:33.054 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:33.054 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:33.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-18 05:21:33.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:33.234 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:33.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36622 150' command took 2 ms to send, 1378 ms to get response, and 1382 ms overall 17-03-18 05:21:33.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:33.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166828223705343. ------ 17-03-18 05:21:33.244 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:33.244 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17332 mm 17-03-18 05:21:33.244 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:33.244 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-18 05:21:33.244 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm 17-03-18 05:21:33.244 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37861, sync = True, waitForSettling = False) 17-03-18 05:21:33.244 -07 000000447 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:33.244 -07 000000501 INF: Z Motor: Moving to -0.173317 mm, started at -0.166828 mm, distance = -6.49 um 17-03-18 05:21:33.254 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:33.254 -07 000000501 INF: FPGA: Xmit ZDACW 37861\n [Z Motor] 17-03-18 05:21:33.254 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:21:33.264 -07 000000501 INF: FPGA: 'ZDACW 37861' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 05:21:33.264 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:33.264 -07 000000461 INF: FPGA: Recv YRDPOS 146468 17-03-18 05:21:33.274 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:33.274 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 05:21:33.274 -07 000000424 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:33.274 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:33.274 -07 000000424 INF: Y Motor: Moving 1352 steps-31 17-03-18 05:21:33.294 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:33.294 -07 000000479 INF: FPGA: Recv ZDACR 37861 17-03-18 05:21:33.304 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:33.304 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall 17-03-18 05:21:33.304 -07 000000501 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet)) 17-03-18 05:21:33.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 05:21:33.444 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:21:33.444 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:33.444 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 05:21:33.444 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 05:21:33.444 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:33.454 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:33.454 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 05:21:33.454 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:33.464 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 05:21:33.474 -07 000000461 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:33.474 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall 17-03-18 05:21:33.674 -07 000000479 INF: FPGA: Recv YMVTILE 17-03-18 05:21:33.674 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 408 ms overall 17-03-18 05:21:33.724 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:33.734 -07 000000625 INF: FPGA: Recv YRDPOS 148169 17-03-18 05:21:33.734 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-18 05:21:33.734 -07 000000424 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:33.734 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 05:21:33.734 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.845 mm, average velocity = 2.071 mm/sec 17-03-18 05:21:33.834 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.015368, 17-03-18 05:21:34.684 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:34.684 -07 000000569 INF: FPGA: Recv YRDPOS 148169 17-03-18 05:21:34.694 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:34.694 -07 000000424 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:34.724 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:34.724 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:34.724 -07 000000424 INF: Y Motor: Moved to 72.3481 after 1475 ms (table move) 17-03-18 05:21:34.724 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173317 mm (DAC = 37861) 17-03-18 05:21:34.724 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.724 -07 000000455 INF: FPGA: Recv ZSGSRD 36274 17-03-18 05:21:34.734 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 05:21:34.734 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.734 -07 000000424 INF: FPGA: Recv ZSGSRD 36274 17-03-18 05:21:34.744 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.744 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.744 -07 000000625 INF: FPGA: Recv ZSGSRD 36265 17-03-18 05:21:34.754 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.754 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.754 -07 000000606 INF: FPGA: Recv ZSGSRD 36267 17-03-18 05:21:34.764 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.764 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.764 -07 000000512 INF: FPGA: Recv ZSGSRD 36271 17-03-18 05:21:34.774 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.774 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36265 17-03-18 05:21:34.784 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.784 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.784 -07 000000579 INF: FPGA: Recv ZSGSRD 36278 17-03-18 05:21:34.794 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.794 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.794 -07 000000461 INF: FPGA: Recv ZSGSRD 36260 17-03-18 05:21:34.804 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.804 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.804 -07 000000455 INF: FPGA: Recv ZSGSRD 36273 17-03-18 05:21:34.814 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:34.814 -07 000000447 INF: FPGA: Recv ZSGSRD 36269 17-03-18 05:21:34.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.824 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:34.824 -07 000000480 INF: FPGA: Recv ZPIEZORD 32332 17-03-18 05:21:34.834 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:34.834 -07 000000502 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.7 V. 17-03-18 05:21:34.834 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36270 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36270 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36260 (-172.4 uncal um), Max = 36278 (-172.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 05:21:34.834 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36270, posNoise = 8, negNoise = 10 17-03-18 05:21:34.834 -07 000000502 INF: Z Motor: After move to -0.173317, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:34.834 -07 000000502 INF: Z Motor: Settle wait time = 1478 ms, measure time = 103 ms (allowed 150 ms), total time = 1581 ms 17-03-18 05:21:34.834 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:34.884 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms 17-03-18 05:21:34.884 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:34.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:34.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:34.884 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:34.884 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:34.884 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:34.884 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:34.884 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:34.884 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:34.894 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:34.894 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:34.894 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:34.894 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 05:21:34.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:34.944 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:35.244 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:35.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:35.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:35.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-18 05:21:35.284 -07 000000447 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:35.284 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:35.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 05:21:35.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:21:35.364 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:35.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:35.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:21:35.384 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:35.384 -07 000000626 INF: Autofocus start 17-03-18 05:21:35.384 -07 000000626 INF: MeasureProfile start 17-03-18 05:21:35.384 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:35.394 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:35.394 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:35.394 -07 000000626 INF: MeasureProfile done 17-03-18 05:21:35.394 -07 000000626 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:21:35.394 -07 000000626 INF: Autofocus finished 17-03-18 05:21:35.594 -07 000000625 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:35.594 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 05:21:35.594 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173329526392805. ---------- 17-03-18 05:21:35.594 -07 000000610 INF: Cycle 136 Tile 16 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:35.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36376, sync = True, waitForSettling = True) 17-03-18 05:21:35.604 -07 000000610 INF: Z Motor: Moving to -0.166519 mm, started at -0.173330 mm, distance = 6.81 um 17-03-18 05:21:35.604 -07 000000610 INF: FPGA: Xmit ZDACW 36376\n [Z Motor] 17-03-18 05:21:35.604 -07 000000467 INF: FPGA: Recv ZDACW 17-03-18 05:21:35.614 -07 000000610 INF: FPGA: 'ZDACW 36376' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:35.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:35.614 -07 000000424 INF: FPGA: Recv ZDACR 36376 17-03-18 05:21:35.624 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:35.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.774 -07 000000608 INF: FPGA: Recv ZSGSRD 35203 17-03-18 05:21:35.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.784 -07 000000501 INF: FPGA: Recv ZSGSRD 35210 17-03-18 05:21:35.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.794 -07 000000618 INF: FPGA: Recv ZSGSRD 35215 17-03-18 05:21:35.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.804 -07 000000625 INF: FPGA: Recv ZSGSRD 35203 17-03-18 05:21:35.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.814 -07 000000474 INF: FPGA: Recv ZSGSRD 35208 17-03-18 05:21:35.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35207 17-03-18 05:21:35.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.834 -07 000000502 INF: FPGA: Recv ZSGSRD 35215 17-03-18 05:21:35.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.844 -07 000000424 INF: FPGA: Recv ZSGSRD 35213 17-03-18 05:21:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.854 -07 000000579 INF: FPGA: Recv ZSGSRD 35208 17-03-18 05:21:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:35.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35211 17-03-18 05:21:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:35.874 -07 000000626 INF: FPGA: Recv ZPIEZORD 30937 17-03-18 05:21:35.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:35.884 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.4 V. 17-03-18 05:21:35.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35209 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35209 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35203 (-165.6 uncal um), Max = 35215 (-165.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:21:35.884 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35209, posNoise = 6, negNoise = 6 17-03-18 05:21:35.884 -07 000000610 INF: Z Motor: After move to -0.166519, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:35.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:21:35.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:35.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:35.884 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:35.884 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:35.884 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:35.884 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:35.884 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:35.884 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:35.884 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:35.884 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:35.884 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:35.894 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:35.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:35.894 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:35.894 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:21:35.894 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:35.904 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms. 17-03-18 05:21:35.904 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 05:21:35.904 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:21:35.904 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:21:35.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36552 150\n [Camera] 17-03-18 05:21:36.114 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:36.544 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:36.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:36.544 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:36.544 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:36.544 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:21:36.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:36.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:36.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:36.554 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:36.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:21:36.744 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36552 822 17-03-18 05:21:36.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:36.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:36.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:36.944 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 05:21:36.944 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 05:21:36.944 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:36.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 05:21:36.944 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 05:21:36.944 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:36.954 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:36.954 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 05:21:36.954 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:36.964 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-18 05:21:37.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:37.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:37.104 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:37.104 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:37.104 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 05:21:37.104 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:37.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:37.104 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:37.104 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:37.104 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 05:21:37.294 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:37.294 -07 000000474 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:37.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36552 150' command took 2 ms to send, 1373 ms to get response, and 1382 ms overall 17-03-18 05:21:37.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:37.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166513437310397. ------ 17-03-18 05:21:37.294 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:37.294 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17295 mm 17-03-18 05:21:37.294 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:37.304 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37781, sync = True, waitForSettling = False) 17-03-18 05:21:37.304 -07 000000501 INF: Z Motor: Moving to -0.172950 mm, started at -0.166513 mm, distance = -6.44 um 17-03-18 05:21:37.304 -07 000000501 INF: FPGA: Xmit ZDACW 37781\n [Z Motor] 17-03-18 05:21:37.304 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-18 05:21:37.304 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:37.304 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:21:37.304 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm 17-03-18 05:21:37.304 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:21:37.314 -07 000000501 INF: FPGA: 'ZDACW 37781' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:37.314 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:37.314 -07 000000626 INF: FPGA: Recv ZDACR 37781 17-03-18 05:21:37.324 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:37.324 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:37.324 -07 000000501 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet)) 17-03-18 05:21:37.334 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:37.334 -07 000000461 INF: FPGA: Recv YRDPOS 148169 17-03-18 05:21:37.344 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall 17-03-18 05:21:37.344 -07 000000424 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:37.344 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:37.344 -07 000000424 INF: Y Motor: Moving 1351 steps-30 17-03-18 05:21:37.344 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:37.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms. 17-03-18 05:21:37.504 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:21:37.504 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:37.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms. 17-03-18 05:21:37.514 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:21:37.514 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:37.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:37.514 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:21:37.514 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-18 05:21:37.524 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 05:21:37.524 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:37.524 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 224 ms overall 17-03-18 05:21:37.714 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 05:21:37.714 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall 17-03-18 05:21:37.764 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:37.774 -07 000000480 INF: FPGA: Recv YRDPOS 149861 17-03-18 05:21:37.774 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:21:37.774 -07 000000424 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:37.774 -07 000000424 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm) 17-03-18 05:21:37.774 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec 17-03-18 05:21:38.724 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:38.724 -07 000000455 INF: FPGA: Recv YRDPOS 149862 17-03-18 05:21:38.734 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:38.734 -07 000000424 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:38.764 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:38.764 -07 000000424 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:21:38.764 -07 000000424 INF: Y Motor: Moved to 73.1748 after 1461 ms (table move) 17-03-18 05:21:38.764 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172950 mm (DAC = 37781) 17-03-18 05:21:38.764 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.774 -07 000000501 INF: FPGA: Recv ZSGSRD 36211 17-03-18 05:21:38.774 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 05:21:38.774 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.774 -07 000000512 INF: FPGA: Recv ZSGSRD 36215 17-03-18 05:21:38.784 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.784 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.784 -07 000000480 INF: FPGA: Recv ZSGSRD 36214 17-03-18 05:21:38.794 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.794 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.794 -07 000000501 INF: FPGA: Recv ZSGSRD 36209 17-03-18 05:21:38.804 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.804 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.804 -07 000000608 INF: FPGA: Recv ZSGSRD 36208 17-03-18 05:21:38.814 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.814 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.814 -07 000000424 INF: FPGA: Recv ZSGSRD 36211 17-03-18 05:21:38.824 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.824 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.824 -07 000000581 INF: FPGA: Recv ZSGSRD 36213 17-03-18 05:21:38.834 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.834 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.834 -07 000000467 INF: FPGA: Recv ZSGSRD 36206 17-03-18 05:21:38.844 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.844 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.844 -07 000000618 INF: FPGA: Recv ZSGSRD 36211 17-03-18 05:21:38.854 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.854 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:38.854 -07 000000608 INF: FPGA: Recv ZSGSRD 36215 17-03-18 05:21:38.864 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.864 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:38.864 -07 000000569 INF: FPGA: Recv ZPIEZORD 32285 17-03-18 05:21:38.874 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:38.874 -07 000000606 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.765 V. Piezo Error = -8.7 V. 17-03-18 05:21:38.874 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36211 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36211 (-172.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36206 (-172.0 uncal um), Max = 36215 (-172.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:38.874 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36211, posNoise = 4, negNoise = 5 17-03-18 05:21:38.874 -07 000000606 INF: Z Motor: After move to -0.172950, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:38.874 -07 000000606 INF: Z Motor: Settle wait time = 1466 ms, measure time = 103 ms (allowed 150 ms), total time = 1569 ms 17-03-18 05:21:38.874 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:38.924 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms 17-03-18 05:21:38.924 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:38.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:38.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:38.934 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:38.934 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:38.934 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:38.944 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:38.944 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:38.944 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:38.944 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:38.944 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:38.954 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:38.954 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 05:21:38.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:39.004 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:39.194 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.986717, 17-03-18 05:21:39.304 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:39.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:39.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:39.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start. 17-03-18 05:21:39.344 -07 000000512 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:39.344 -07 000000467 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:39.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall 17-03-18 05:21:39.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:21:39.414 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:39.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:39.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:21:39.444 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:39.444 -07 000000424 INF: Autofocus start 17-03-18 05:21:39.444 -07 000000424 INF: MeasureProfile start 17-03-18 05:21:39.444 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:39.454 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:39.454 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:39.454 -07 000000424 INF: MeasureProfile done 17-03-18 05:21:39.454 -07 000000424 INF: X=48 Z correction [um]=0.1739867 17-03-18 05:21:39.454 -07 000000424 INF: Autofocus finished 17-03-18 05:21:39.654 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:39.654 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:39.654 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172950497876441. ---------- 17-03-18 05:21:39.654 -07 000000610 INF: Cycle 136 Tile 17 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:39.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36331, sync = True, waitForSettling = True) 17-03-18 05:21:39.664 -07 000000610 INF: Z Motor: Moving to -0.166313 mm, started at -0.172950 mm, distance = 6.64 um 17-03-18 05:21:39.664 -07 000000610 INF: FPGA: Xmit ZDACW 36331\n [Z Motor] 17-03-18 05:21:39.664 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 05:21:39.674 -07 000000610 INF: FPGA: 'ZDACW 36331' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:39.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:39.674 -07 000000447 INF: FPGA: Recv ZDACR 36331 17-03-18 05:21:39.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:39.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.834 -07 000000569 INF: FPGA: Recv ZSGSRD 35185 17-03-18 05:21:39.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:39.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.844 -07 000000467 INF: FPGA: Recv ZSGSRD 35186 17-03-18 05:21:39.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.854 -07 000000626 INF: FPGA: Recv ZSGSRD 35175 17-03-18 05:21:39.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.864 -07 000000618 INF: FPGA: Recv ZSGSRD 35178 17-03-18 05:21:39.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35178 17-03-18 05:21:39.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35178 17-03-18 05:21:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.894 -07 000000455 INF: FPGA: Recv ZSGSRD 35179 17-03-18 05:21:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35180 17-03-18 05:21:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.914 -07 000000502 INF: FPGA: Recv ZSGSRD 35182 17-03-18 05:21:39.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:39.924 -07 000000625 INF: FPGA: Recv ZSGSRD 35181 17-03-18 05:21:39.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:39.934 -07 000000569 INF: FPGA: Recv ZPIEZORD 30885 17-03-18 05:21:39.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:39.944 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.5 V. 17-03-18 05:21:39.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35180 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35180 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35175 (-165.4 uncal um), Max = 35186 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:39.944 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35180, posNoise = 6, negNoise = 5 17-03-18 05:21:39.944 -07 000000610 INF: Z Motor: After move to -0.166313, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:39.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 05:21:39.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:39.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:39.944 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:39.944 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:39.944 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:39.944 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:39.944 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:39.944 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:39.944 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:39.944 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:39.944 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:39.944 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:39.954 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:39.954 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:39.954 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:39.954 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:39.964 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:21:39.964 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:21:39.964 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:21:39.964 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:21:39.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36508 150\n [Camera] 17-03-18 05:21:40.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:40.604 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:40.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:40.604 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:40.604 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:40.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-18 05:21:40.604 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:40.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:40.604 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:40.604 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:40.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start. 17-03-18 05:21:40.794 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36508 822 17-03-18 05:21:40.944 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:41.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 05:21:41.004 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 05:21:41.004 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:41.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 05:21:41.004 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 05:21:41.004 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:41.004 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:41.004 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 05:21:41.014 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:41.014 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 05:21:41.154 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:41.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:41.154 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:41.154 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:41.154 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 05:21:41.154 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:41.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:41.154 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:41.154 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:41.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 05:21:41.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:41.344 -07 000000455 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:41.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36508 150' command took 2 ms to send, 1375 ms to get response, and 1382 ms overall 17-03-18 05:21:41.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:41.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166327135158285. ------ 17-03-18 05:21:41.354 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:41.354 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17208 mm 17-03-18 05:21:41.354 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:41.354 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-18 05:21:41.354 -07 000000474 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm 17-03-18 05:21:41.354 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:41.354 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37592, sync = True, waitForSettling = False) 17-03-18 05:21:41.354 -07 000000579 INF: Z Motor: Moving to -0.172085 mm, started at -0.166327 mm, distance = -5.76 um 17-03-18 05:21:41.364 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:21:41.364 -07 000000579 INF: FPGA: Xmit ZDACW 37592\n [Z Motor] 17-03-18 05:21:41.364 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 05:21:41.374 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:41.374 -07 000000579 INF: FPGA: 'ZDACW 37592' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 05:21:41.374 -07 000000569 INF: FPGA: Recv YRDPOS 149862 17-03-18 05:21:41.384 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:41.384 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 05:21:41.384 -07 000000474 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:41.384 -07 000000474 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:41.384 -07 000000474 INF: Y Motor: Moving 1356 steps-37 17-03-18 05:21:41.394 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:41.394 -07 000000625 INF: FPGA: Recv ZDACR 37592 17-03-18 05:21:41.404 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:41.404 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:41.404 -07 000000579 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet)) 17-03-18 05:21:41.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 05:21:41.554 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 05:21:41.554 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:41.554 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 05:21:41.554 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 05:21:41.554 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:41.564 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:41.564 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:21:41.564 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 05:21:41.564 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 05:21:41.584 -07 000000579 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:41.584 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:21:41.754 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:41.784 -07 000000608 INF: FPGA: Recv YMVTILE 17-03-18 05:21:41.784 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall 17-03-18 05:21:41.824 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:41.824 -07 000000382 INF: FPGA: Recv YRDPOS 151565 17-03-18 05:21:41.834 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:41.834 -07 000000474 INF: Y Motor: Encoder = 151565 = motor step 118410.2 = 74.0063 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:41.834 -07 000000474 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-18 05:21:41.834 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.848 mm, average velocity = 2.114 mm/sec 17-03-18 05:21:42.784 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:42.784 -07 000000579 INF: FPGA: Recv YRDPOS 151566 17-03-18 05:21:42.794 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:42.794 -07 000000474 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:42.814 -07 000000474 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:42.814 -07 000000474 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:21:42.814 -07 000000474 INF: Y Motor: Moved to 74.0068 after 1458 ms (table move) 17-03-18 05:21:42.814 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172085 mm (DAC = 37592) 17-03-18 05:21:42.814 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36086 17-03-18 05:21:42.834 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:42.834 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.834 -07 000000579 INF: FPGA: Recv ZSGSRD 36075 17-03-18 05:21:42.844 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.844 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.844 -07 000000501 INF: FPGA: Recv ZSGSRD 36081 17-03-18 05:21:42.854 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.854 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.854 -07 000000455 INF: FPGA: Recv ZSGSRD 36078 17-03-18 05:21:42.864 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.864 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.864 -07 000000474 INF: FPGA: Recv ZSGSRD 36076 17-03-18 05:21:42.874 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.874 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.874 -07 000000625 INF: FPGA: Recv ZSGSRD 36074 17-03-18 05:21:42.884 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.884 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.884 -07 000000480 INF: FPGA: Recv ZSGSRD 36075 17-03-18 05:21:42.894 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.894 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.894 -07 000000501 INF: FPGA: Recv ZSGSRD 36073 17-03-18 05:21:42.904 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.904 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.904 -07 000000606 INF: FPGA: Recv ZSGSRD 36079 17-03-18 05:21:42.914 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:42.914 -07 000000474 INF: FPGA: Recv ZSGSRD 36077 17-03-18 05:21:42.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.924 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:42.924 -07 000000625 INF: FPGA: Recv ZPIEZORD 32108 17-03-18 05:21:42.934 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:42.934 -07 000000461 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.8 V. 17-03-18 05:21:42.934 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36077 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36076 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36073 (-171.2 uncal um), Max = 36086 (-171.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:21:42.934 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36077, posNoise = 9, negNoise = 4 17-03-18 05:21:42.934 -07 000000461 INF: Z Motor: After move to -0.172085, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:42.934 -07 000000461 INF: Z Motor: Settle wait time = 1460 ms, measure time = 111 ms (allowed 150 ms), total time = 1571 ms 17-03-18 05:21:42.934 -07 000000461 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:42.974 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms 17-03-18 05:21:42.974 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:42.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:42.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:42.974 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:42.974 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:42.974 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:42.974 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:42.974 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:42.974 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:42.984 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:42.984 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:42.984 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:21:42.984 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:21:42.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:43.034 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:43.334 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:43.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:43.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:43.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start. 17-03-18 05:21:43.374 -07 000000569 INF: FPGA: Recv @CAMSNAP 382 17-03-18 05:21:43.374 -07 000000579 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:43.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall 17-03-18 05:21:43.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 117 ms. 17-03-18 05:21:43.454 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:43.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:43.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:21:43.474 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:43.474 -07 000000501 INF: Autofocus start 17-03-18 05:21:43.474 -07 000000501 INF: MeasureProfile start 17-03-18 05:21:43.474 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:43.484 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:43.484 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:43.494 -07 000000501 INF: MeasureProfile done 17-03-18 05:21:43.494 -07 000000501 INF: X=32 Z correction [um]=0.09220707 17-03-18 05:21:43.494 -07 000000501 INF: Autofocus finished 17-03-18 05:21:43.684 -07 000000581 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:43.684 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:43.684 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172089653449445. ---------- 17-03-18 05:21:43.694 -07 000000610 INF: Cycle 136 Tile 18 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:43.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36124, sync = True, waitForSettling = True) 17-03-18 05:21:43.694 -07 000000610 INF: Z Motor: Moving to -0.165365 mm, started at -0.172090 mm, distance = 6.72 um 17-03-18 05:21:43.694 -07 000000610 INF: FPGA: Xmit ZDACW 36124\n [Z Motor] 17-03-18 05:21:43.694 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:21:43.704 -07 000000610 INF: FPGA: 'ZDACW 36124' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:43.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:43.704 -07 000000569 INF: FPGA: Recv ZDACR 36124 17-03-18 05:21:43.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:43.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35031 17-03-18 05:21:43.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:43.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.874 -07 000000581 INF: FPGA: Recv ZSGSRD 35033 17-03-18 05:21:43.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.884 -07 000000625 INF: FPGA: Recv ZSGSRD 35033 17-03-18 05:21:43.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.894 -07 000000474 INF: FPGA: Recv ZSGSRD 35031 17-03-18 05:21:43.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.904 -07 000000447 INF: FPGA: Recv ZSGSRD 35037 17-03-18 05:21:43.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.914 -07 000000512 INF: FPGA: Recv ZSGSRD 35033 17-03-18 05:21:43.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.924 -07 000000502 INF: FPGA: Recv ZSGSRD 35031 17-03-18 05:21:43.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.934 -07 000000579 INF: FPGA: Recv ZSGSRD 35030 17-03-18 05:21:43.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.944 -07 000000474 INF: FPGA: Recv ZSGSRD 35037 17-03-18 05:21:43.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:43.954 -07 000000579 INF: FPGA: Recv ZSGSRD 35037 17-03-18 05:21:43.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:43.964 -07 000000606 INF: FPGA: Recv ZPIEZORD 30741 17-03-18 05:21:43.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:43.974 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.512 V. Piezo Error = -9.5 V. 17-03-18 05:21:43.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35033 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35033 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35030 (-164.5 uncal um), Max = 35037 (-164.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 05:21:43.974 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35033, posNoise = 4, negNoise = 3 17-03-18 05:21:43.974 -07 000000610 INF: Z Motor: After move to -0.165365, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:43.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:43.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:43.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:43.974 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:43.974 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:43.974 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:43.974 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:43.974 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:43.984 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:43.984 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:43.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:43.984 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:43.984 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:43.984 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:43.984 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:43.984 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:21:43.984 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:44.004 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 05:21:44.004 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:21:44.004 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 05:21:44.004 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:21:44.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36301 150\n [Camera] 17-03-18 05:21:44.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:44.554 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.977204, 17-03-18 05:21:44.644 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:44.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:44.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:44.644 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:44.644 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start. 17-03-18 05:21:44.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:44.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:44.644 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:44.644 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:44.644 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 05:21:44.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36301 822 17-03-18 05:21:44.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:45.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms. 17-03-18 05:21:45.034 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 05:21:45.034 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:45.034 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 05:21:45.034 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 05:21:45.034 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:45.034 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:45.034 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 05:21:45.044 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:45.044 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:21:45.194 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:45.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:45.194 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:45.194 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:45.194 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 05:21:45.194 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:45.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:45.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:45.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:45.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start. 17-03-18 05:21:45.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:21:45.384 -07 000000626 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:45.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36301 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:21:45.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 05:21:45.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165382775973447. ------ 17-03-18 05:21:45.394 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:45.394 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17170 mm 17-03-18 05:21:45.394 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:45.394 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-18 05:21:45.394 -07 000000579 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm 17-03-18 05:21:45.394 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:45.394 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37508, sync = True, waitForSettling = False) 17-03-18 05:21:45.394 -07 000000625 INF: Z Motor: Moving to -0.171701 mm, started at -0.165383 mm, distance = -6.32 um 17-03-18 05:21:45.404 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:21:45.404 -07 000000625 INF: FPGA: Xmit ZDACW 37508\n [Z Motor] 17-03-18 05:21:45.404 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 05:21:45.414 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:45.414 -07 000000625 INF: FPGA: 'ZDACW 37508' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 05:21:45.414 -07 000000618 INF: FPGA: Recv YRDPOS 151566 17-03-18 05:21:45.424 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:45.424 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 05:21:45.424 -07 000000579 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:45.424 -07 000000579 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:45.424 -07 000000579 INF: Y Motor: Moving 1353 steps-33 17-03-18 05:21:45.434 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:45.434 -07 000000618 INF: FPGA: Recv ZDACR 37508 17-03-18 05:21:45.444 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:45.444 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:45.444 -07 000000625 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet)) 17-03-18 05:21:45.594 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms. 17-03-18 05:21:45.594 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:21:45.594 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:45.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 05:21:45.604 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 05:21:45.604 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:45.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:45.604 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:21:45.604 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-18 05:21:45.614 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 05:21:45.624 -07 000000512 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:45.624 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:21:45.814 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 05:21:45.814 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:21:45.844 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:45.854 -07 000000447 INF: FPGA: Recv YRDPOS 153253 17-03-18 05:21:45.854 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:21:45.854 -07 000000579 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:45.854 -07 000000579 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm) 17-03-18 05:21:45.854 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec 17-03-18 05:21:46.754 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:46.804 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:46.804 -07 000000569 INF: FPGA: Recv YRDPOS 153253 17-03-18 05:21:46.814 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.814 -07 000000579 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:46.844 -07 000000579 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:46.844 -07 000000579 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:46.844 -07 000000579 INF: Y Motor: Moved to 74.8306 after 1447 ms (table move) 17-03-18 05:21:46.844 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171701 mm (DAC = 37508) 17-03-18 05:21:46.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36028 17-03-18 05:21:46.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 05:21:46.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.854 -07 000000480 INF: FPGA: Recv ZSGSRD 36013 17-03-18 05:21:46.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:46.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.864 -07 000000447 INF: FPGA: Recv ZSGSRD 36020 17-03-18 05:21:46.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.874 -07 000000467 INF: FPGA: Recv ZSGSRD 36020 17-03-18 05:21:46.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.884 -07 000000625 INF: FPGA: Recv ZSGSRD 36019 17-03-18 05:21:46.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.894 -07 000000502 INF: FPGA: Recv ZSGSRD 36021 17-03-18 05:21:46.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.904 -07 000000626 INF: FPGA: Recv ZSGSRD 36019 17-03-18 05:21:46.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.914 -07 000000447 INF: FPGA: Recv ZSGSRD 36014 17-03-18 05:21:46.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.924 -07 000000618 INF: FPGA: Recv ZSGSRD 36017 17-03-18 05:21:46.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.934 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:46.934 -07 000000512 INF: FPGA: Recv ZSGSRD 36013 17-03-18 05:21:46.944 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.944 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:46.944 -07 000000474 INF: FPGA: Recv ZPIEZORD 32054 17-03-18 05:21:46.954 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:46.954 -07 000000501 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -8.8 V. 17-03-18 05:21:46.954 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36018 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36019 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36013 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:46.954 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36018, posNoise = 10, negNoise = 5 17-03-18 05:21:46.954 -07 000000501 INF: Z Motor: After move to -0.171701, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:46.954 -07 000000501 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms 17-03-18 05:21:46.954 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:47.004 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms 17-03-18 05:21:47.004 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:47.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:47.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:47.004 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:47.004 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:47.004 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:47.004 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:47.004 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:47.004 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:47.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:21:47.014 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:47.014 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:21:47.014 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:21:47.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:47.064 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:47.364 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:47.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:47.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:47.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start. 17-03-18 05:21:47.404 -07 000000626 INF: FPGA: Recv @CAMSNAP 382 17-03-18 05:21:47.404 -07 000000455 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:47.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall 17-03-18 05:21:47.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 119 ms. 17-03-18 05:21:47.494 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:47.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:21:47.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms. 17-03-18 05:21:47.504 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:47.504 -07 000000474 INF: Autofocus start 17-03-18 05:21:47.504 -07 000000474 INF: MeasureProfile start 17-03-18 05:21:47.504 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:47.514 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:47.514 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:47.514 -07 000000474 INF: MeasureProfile done 17-03-18 05:21:47.514 -07 000000474 INF: X=16 Z correction [um]=0.01042744 17-03-18 05:21:47.514 -07 000000474 INF: Autofocus finished 17-03-18 05:21:47.714 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:47.714 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall 17-03-18 05:21:47.714 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171710624933081. ---------- 17-03-18 05:21:47.724 -07 000000610 INF: Cycle 136 Tile 19 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:47.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36023, sync = True, waitForSettling = True) 17-03-18 05:21:47.724 -07 000000610 INF: Z Motor: Moving to -0.164903 mm, started at -0.171711 mm, distance = 6.81 um 17-03-18 05:21:47.724 -07 000000610 INF: FPGA: Xmit ZDACW 36023\n [Z Motor] 17-03-18 05:21:47.724 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:21:47.734 -07 000000610 INF: FPGA: 'ZDACW 36023' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:47.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:47.734 -07 000000606 INF: FPGA: Recv ZDACR 36023 17-03-18 05:21:47.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.894 -07 000000424 INF: FPGA: Recv ZSGSRD 34960 17-03-18 05:21:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:47.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.904 -07 000000579 INF: FPGA: Recv ZSGSRD 34960 17-03-18 05:21:47.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.914 -07 000000447 INF: FPGA: Recv ZSGSRD 34960 17-03-18 05:21:47.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.924 -07 000000581 INF: FPGA: Recv ZSGSRD 34958 17-03-18 05:21:47.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.934 -07 000000625 INF: FPGA: Recv ZSGSRD 34962 17-03-18 05:21:47.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.944 -07 000000467 INF: FPGA: Recv ZSGSRD 34948 17-03-18 05:21:47.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.954 -07 000000512 INF: FPGA: Recv ZSGSRD 34965 17-03-18 05:21:47.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.964 -07 000000382 INF: FPGA: Recv ZSGSRD 34963 17-03-18 05:21:47.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.974 -07 000000461 INF: FPGA: Recv ZSGSRD 34956 17-03-18 05:21:47.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:47.984 -07 000000502 INF: FPGA: Recv ZSGSRD 34964 17-03-18 05:21:47.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:47.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:47.994 -07 000000424 INF: FPGA: Recv ZPIEZORD 30607 17-03-18 05:21:48.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:48.004 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.497 V. Piezo Error = -9.6 V. 17-03-18 05:21:48.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34960 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34960 (-164.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 34948 (-164.0 uncal um), Max = 34965 (-164.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-18 05:21:48.004 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34960, posNoise = 5, negNoise = 12 17-03-18 05:21:48.004 -07 000000610 INF: Z Motor: After move to -0.164903, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:48.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:48.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:48.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:48.004 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:48.004 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:48.004 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:48.004 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:48.004 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:48.004 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:48.004 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:48.004 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:48.004 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:21:48.004 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:48.014 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:48.014 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:48.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:21:48.014 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:48.024 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:21:48.024 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:21:48.024 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 05:21:48.024 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:21:48.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 36200 150\n [Camera] 17-03-18 05:21:48.224 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:48.654 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:48.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:48.664 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:48.664 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:48.664 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start. 17-03-18 05:21:48.664 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:48.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:48.664 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:48.664 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:48.664 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start. 17-03-18 05:21:48.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36200 822 17-03-18 05:21:49.004 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:49.054 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 05:21:49.064 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:21:49.064 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:49.064 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 05:21:49.064 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 05:21:49.064 -07 000000479 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:49.064 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:49.064 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:21:49.064 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:49.074 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 05:21:49.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:49.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:49.214 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:49.354 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:49.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:49.354 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:49.354 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:49.354 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start. 17-03-18 05:21:49.354 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:49.354 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start. 17-03-18 05:21:49.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:21:49.404 -07 000000447 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:49.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 36200 150' command took 4 ms to send, 1374 ms to get response, and 1381 ms overall 17-03-18 05:21:49.744 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 05:21:49.744 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 05:21:49.744 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:49.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 05:21:49.754 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:21:49.754 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:49.754 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:49.754 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:21:49.754 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 541 ms. 17-03-18 05:21:49.754 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-18 05:21:49.754 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-18 05:21:49.794 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-18 05:21:49.794 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-18 05:21:49.844 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-18 05:21:49.844 -07 000000610 INF: Move compensator for Bottom-surface imaging. 17-03-18 05:21:49.844 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-18 05:21:49.844 -07 000000424 INF: FPGA: Recv EMCUR 17-03-18 05:21:49.854 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:49.854 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator] 17-03-18 05:21:49.914 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.997626, 17-03-18 05:21:50.354 -07 000000625 INF: FPGA: Recv EMIN 17-03-18 05:21:50.354 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-18 05:21:50.354 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator] 17-03-18 05:21:50.354 -07 000000618 INF: FPGA: Recv EMCUR 17-03-18 05:21:50.364 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:50.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:21:50.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164913808487098. ------ 17-03-18 05:21:50.364 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:50.364 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13934 mm 17-03-18 05:21:50.364 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:50.364 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-18 05:21:50.364 -07 000000625 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm 17-03-18 05:21:50.364 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30438, sync = True, waitForSettling = False) 17-03-18 05:21:50.364 -07 000000581 INF: Z Motor: Moving to -0.139336 mm, started at -0.164914 mm, distance = 25.58 um 17-03-18 05:21:50.364 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:50.374 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:21:50.374 -07 000000581 INF: FPGA: Xmit ZDACW 30438\n [Z Motor] 17-03-18 05:21:50.374 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:21:50.384 -07 000000581 INF: FPGA: 'ZDACW 30438' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:50.384 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:50.384 -07 000000579 INF: FPGA: Recv YRDPOS 153254 17-03-18 05:21:50.394 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 05:21:50.394 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:50.394 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:50.394 -07 000000625 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False 17-03-18 05:21:50.394 -07 000000625 INF: Y Motor: Moving to 122701 encoder counts 17-03-18 05:21:50.404 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:50.404 -07 000000606 INF: FPGA: Recv ZDACR 30438 17-03-18 05:21:50.414 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:50.414 -07 000000625 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-18 05:21:50.414 -07 000000581 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet)) 17-03-18 05:21:50.594 -07 000000608 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:50.594 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall 17-03-18 05:21:51.754 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:52.034 -07 000000479 INF: FPGA: Recv YMVTO 122702 23903 17-03-18 05:21:52.034 -07 000000625 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall 17-03-18 05:21:52.034 -07 000000625 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm) 17-03-18 05:21:52.034 -07 000000625 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%). 17-03-18 05:21:52.034 -07 000000625 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.918 mm, average velocity = 9.074 mm/sec 17-03-18 05:21:54.884 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:54.884 -07 000000512 INF: FPGA: Recv YRDPOS 122696 17-03-18 05:21:54.894 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:54.894 -07 000000625 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:54.934 -07 000000625 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:54.934 -07 000000625 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm) 17-03-18 05:21:54.934 -07 000000625 INF: Y Motor: Moved to 59.9102 after 4562 ms 17-03-18 05:21:54.934 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139336 mm (DAC = 30438) 17-03-18 05:21:54.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:54.934 -07 000000502 INF: FPGA: Recv ZSGSRD 30983 17-03-18 05:21:54.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:54.944 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:54.944 -07 000000608 INF: FPGA: Recv ZSGSRD 30981 17-03-18 05:21:54.954 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:54.964 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:54.964 -07 000000579 INF: FPGA: Recv ZSGSRD 30975 17-03-18 05:21:54.974 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:21:54.974 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:54.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30979 17-03-18 05:21:54.984 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:54.984 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:54.984 -07 000000502 INF: FPGA: Recv ZSGSRD 30981 17-03-18 05:21:54.994 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:54.994 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:54.994 -07 000000501 INF: FPGA: Recv ZSGSRD 30981 17-03-18 05:21:55.004 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.004 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:55.004 -07 000000512 INF: FPGA: Recv ZSGSRD 30982 17-03-18 05:21:55.014 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.014 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:55.014 -07 000000608 INF: FPGA: Recv ZSGSRD 30977 17-03-18 05:21:55.024 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.024 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:55.024 -07 000000424 INF: FPGA: Recv ZSGSRD 30986 17-03-18 05:21:55.034 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.034 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:55.034 -07 000000502 INF: FPGA: Recv ZSGSRD 30978 17-03-18 05:21:55.044 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.044 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:55.044 -07 000000501 INF: FPGA: Recv ZPIEZORD 26459 17-03-18 05:21:55.054 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.054 -07 000000447 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.645 V. Piezo Error = -9.9 V. 17-03-18 05:21:55.054 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30980 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30981 (-138.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30975 (-138.5 uncal um), Max = 30986 (-138.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:55.054 -07 000000447 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30980, posNoise = 6, negNoise = 5 17-03-18 05:21:55.054 -07 000000447 INF: Z Motor: After move to -0.139336, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:55.054 -07 000000447 INF: Z Motor: Settle wait time = 4565 ms, measure time = 116 ms (allowed 150 ms), total time = 4681 ms 17-03-18 05:21:55.054 -07 000000447 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:55.094 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms 17-03-18 05:21:55.094 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:55.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:55.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:55.094 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:55.094 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:55.094 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:55.094 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:55.094 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:55.094 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-18 05:21:55.124 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms. 17-03-18 05:21:55.124 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:55.124 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-18 05:21:55.124 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:55.134 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 05:21:55.134 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms. 17-03-18 05:21:55.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:55.184 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:55.274 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.971733, 17-03-18 05:21:55.484 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:55.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:55.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:55.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start. 17-03-18 05:21:55.524 -07 000000424 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:55.524 -07 000000467 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:55.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:21:55.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 125 ms. 17-03-18 05:21:55.614 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:55.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:55.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-18 05:21:55.624 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:55.624 -07 000000579 INF: Image SNR check: start 17-03-18 05:21:55.624 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:55.634 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:21:55.634 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:55.634 -07 000000579 INF: Image SNR check: pass [peak (Max-Min)=113.33] 17-03-18 05:21:55.634 -07 000000579 INF: Autofocus start 17-03-18 05:21:55.634 -07 000000579 INF: MeasureProfile start 17-03-18 05:21:55.644 -07 000000579 INF: MeasureProfile done 17-03-18 05:21:55.654 -07 000000579 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:21:55.654 -07 000000579 INF: Autofocus finished 17-03-18 05:21:55.834 -07 000000479 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:55.834 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:55.834 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139345444162889. ---------- 17-03-18 05:21:55.834 -07 000000610 INF: Cycle 136 Tile 1 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:55.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28962, sync = True, waitForSettling = True) 17-03-18 05:21:55.844 -07 000000610 INF: Z Motor: Moving to -0.132580 mm, started at -0.139345 mm, distance = 6.77 um 17-03-18 05:21:55.844 -07 000000610 INF: FPGA: Xmit ZDACW 28962\n [Z Motor] 17-03-18 05:21:55.844 -07 000000502 INF: FPGA: Recv ZDACW 17-03-18 05:21:55.854 -07 000000610 INF: FPGA: 'ZDACW 28962' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:21:55.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:55.854 -07 000000424 INF: FPGA: Recv ZDACR 28962 17-03-18 05:21:55.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:55.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:21:56.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.014 -07 000000608 INF: FPGA: Recv ZSGSRD 29928 17-03-18 05:21:56.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.024 -07 000000382 INF: FPGA: Recv ZSGSRD 29928 17-03-18 05:21:56.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.034 -07 000000447 INF: FPGA: Recv ZSGSRD 29925 17-03-18 05:21:56.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.044 -07 000000626 INF: FPGA: Recv ZSGSRD 29925 17-03-18 05:21:56.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.054 -07 000000606 INF: FPGA: Recv ZSGSRD 29929 17-03-18 05:21:56.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29926 17-03-18 05:21:56.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.074 -07 000000512 INF: FPGA: Recv ZSGSRD 29929 17-03-18 05:21:56.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.084 -07 000000625 INF: FPGA: Recv ZSGSRD 29927 17-03-18 05:21:56.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.094 -07 000000479 INF: FPGA: Recv ZSGSRD 29921 17-03-18 05:21:56.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:56.104 -07 000000569 INF: FPGA: Recv ZSGSRD 29922 17-03-18 05:21:56.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:56.114 -07 000000467 INF: FPGA: Recv ZPIEZORD 25348 17-03-18 05:21:56.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:56.124 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -10.0 V. 17-03-18 05:21:56.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29926 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29926 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29921 (-131.8 uncal um), Max = 29929 (-131.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:21:56.124 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29926, posNoise = 3, negNoise = 5 17-03-18 05:21:56.124 -07 000000610 INF: Z Motor: After move to -0.132580, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:56.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:21:56.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:56.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:56.124 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:56.124 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:56.124 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:21:56.124 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:56.124 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:21:56.124 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:21:56.124 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:21:56.124 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:21:56.124 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:21:56.124 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-18 05:21:56.134 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:56.134 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:21:56.144 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 05:21:56.144 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:21:56.144 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms. 17-03-18 05:21:56.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:21:56.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:21:56.154 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:21:56.164 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 05:21:56.164 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms. 17-03-18 05:21:56.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 29139 150\n [Camera] 17-03-18 05:21:56.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:21:56.754 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:21:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:21:56.794 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:21:56.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:21:56.804 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:56.804 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:21:56.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:21:56.804 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:56.814 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:56.814 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:21:56.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:56.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:21:56.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29139 822 17-03-18 05:21:57.144 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:21:57.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms. 17-03-18 05:21:57.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-18 05:21:57.194 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms. 17-03-18 05:21:57.194 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 05:21:57.194 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:57.194 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:57.204 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:21:57.204 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 05:21:57.204 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 05:21:57.214 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 05:21:57.354 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:21:57.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:21:57.354 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:21:57.354 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:21:57.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:21:57.354 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:21:57.484 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:21:57.484 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-18 05:21:57.484 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:21:57.484 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 576162112, 0x0, 418435064) start. 17-03-18 05:21:57.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:21:57.544 -07 000000447 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:21:57.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 29139 150' command took 2 ms to send, 1374 ms to get response, and 1381 ms overall 17-03-18 05:21:57.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:21:57.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132574324565473. ------ 17-03-18 05:21:57.544 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:57.544 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13897 mm 17-03-18 05:21:57.544 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:21:57.554 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-18 05:21:57.554 -07 000000479 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm 17-03-18 05:21:57.554 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30357, sync = True, waitForSettling = False) 17-03-18 05:21:57.554 -07 000000625 INF: Z Motor: Moving to -0.138965 mm, started at -0.132574 mm, distance = -6.39 um 17-03-18 05:21:57.554 -07 000000447 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:57.554 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall 17-03-18 05:21:57.554 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:57.554 -07 000000467 INF: FPGA: Recv YRDPOS 122696 17-03-18 05:21:57.564 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:21:57.564 -07 000000479 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:57.564 -07 000000479 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:21:57.564 -07 000000479 INF: Y Motor: Moving 1332 steps1 17-03-18 05:21:57.564 -07 000000625 INF: FPGA: Xmit ZDACW 30357\n [Z Motor] 17-03-18 05:21:57.564 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 05:21:57.574 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:21:57.574 -07 000000625 INF: FPGA: 'ZDACW 30357' command took 1 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:21:57.584 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:21:57.594 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:57.594 -07 000000581 INF: FPGA: Recv ZDACR 30357 17-03-18 05:21:57.604 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:21:57.604 -07 000000625 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 05:21:57.774 -07 000000447 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:21:57.774 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall 17-03-18 05:21:57.854 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 576162112, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 05:21:57.854 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-18 05:21:57.854 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:57.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms. 17-03-18 05:21:57.864 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 05:21:57.864 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:57.864 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:57.864 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:21:57.864 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms. 17-03-18 05:21:57.874 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms. 17-03-18 05:21:57.954 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-18 05:21:57.954 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:21:57.994 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:58.004 -07 000000501 INF: FPGA: Recv YRDPOS 124380 17-03-18 05:21:58.004 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:21:58.004 -07 000000479 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:58.004 -07 000000479 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 05:21:58.004 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec 17-03-18 05:21:58.954 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:21:58.954 -07 000000455 INF: FPGA: Recv YRDPOS 124380 17-03-18 05:21:58.964 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:21:58.964 -07 000000479 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:21:58.994 -07 000000479 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:21:58.994 -07 000000479 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:21:58.994 -07 000000479 INF: Y Motor: Moved to 60.7324 after 1441 ms (table move) 17-03-18 05:21:58.994 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138965 mm (DAC = 30357) 17-03-18 05:21:58.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.004 -07 000000626 INF: FPGA: Recv ZSGSRD 30919 17-03-18 05:21:59.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 05:21:59.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.004 -07 000000606 INF: FPGA: Recv ZSGSRD 30931 17-03-18 05:21:59.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.014 -07 000000455 INF: FPGA: Recv ZSGSRD 30922 17-03-18 05:21:59.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.024 -07 000000424 INF: FPGA: Recv ZSGSRD 30921 17-03-18 05:21:59.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.034 -07 000000502 INF: FPGA: Recv ZSGSRD 30910 17-03-18 05:21:59.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.044 -07 000000608 INF: FPGA: Recv ZSGSRD 30918 17-03-18 05:21:59.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.054 -07 000000625 INF: FPGA: Recv ZSGSRD 30923 17-03-18 05:21:59.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.064 -07 000000501 INF: FPGA: Recv ZSGSRD 30926 17-03-18 05:21:59.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.074 -07 000000474 INF: FPGA: Recv ZSGSRD 30928 17-03-18 05:21:59.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:21:59.084 -07 000000461 INF: FPGA: Recv ZSGSRD 30921 17-03-18 05:21:59.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.094 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:21:59.094 -07 000000608 INF: FPGA: Recv ZPIEZORD 26678 17-03-18 05:21:59.104 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.104 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.3 V. 17-03-18 05:21:59.104 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30922 (-138.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30910 (-138.1 uncal um), Max = 30931 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-18 05:21:59.104 -07 000000512 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 9, negNoise = 12 17-03-18 05:21:59.104 -07 000000512 INF: Z Motor: After move to -0.138965, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:21:59.104 -07 000000512 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms 17-03-18 05:21:59.104 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 05:21:59.154 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms 17-03-18 05:21:59.154 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:21:59.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:21:59.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:21:59.154 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:21:59.154 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:21:59.154 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:21:59.154 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:21:59.154 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:21:59.154 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:21:59.164 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:21:59.164 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:21:59.174 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 05:21:59.174 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 05:21:59.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:21:59.224 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:21:59.524 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:21:59.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:21:59.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:21:59.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start. 17-03-18 05:21:59.564 -07 000000479 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:21:59.564 -07 000000455 INF: FPGA: Recv CAMSNAP 17-03-18 05:21:59.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall 17-03-18 05:21:59.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 05:21:59.654 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:21:59.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:21:59.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 05:21:59.664 -07 000000618 INF: Autofocus start 17-03-18 05:21:59.664 -07 000000618 INF: MeasureProfile start 17-03-18 05:21:59.664 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:21:59.664 -07 000000447 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:21:59.674 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:21:59.674 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:21:59.674 -07 000000618 INF: MeasureProfile done 17-03-18 05:21:59.674 -07 000000618 INF: X=0 Z correction [um]=-0.02394831 17-03-18 05:21:59.674 -07 000000618 INF: Autofocus finished 17-03-18 05:21:59.874 -07 000000479 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:21:59.874 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:21:59.874 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138972839858667. ---------- 17-03-18 05:21:59.874 -07 000000610 INF: Cycle 136 Tile 2 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:21:59.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28864, sync = True, waitForSettling = True) 17-03-18 05:21:59.884 -07 000000610 INF: Z Motor: Moving to -0.132131 mm, started at -0.138973 mm, distance = 6.84 um 17-03-18 05:21:59.884 -07 000000610 INF: FPGA: Xmit ZDACW 28864\n [Z Motor] 17-03-18 05:21:59.884 -07 000000461 INF: FPGA: Recv ZDACW 17-03-18 05:21:59.894 -07 000000610 INF: FPGA: 'ZDACW 28864' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:21:59.894 -07 000000618 INF: FPGA: Recv ZDACR 28864 17-03-18 05:21:59.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:21:59.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:00.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29856 17-03-18 05:22:00.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:00.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.064 -07 000000382 INF: FPGA: Recv ZSGSRD 29854 17-03-18 05:22:00.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:00.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.074 -07 000000502 INF: FPGA: Recv ZSGSRD 29859 17-03-18 05:22:00.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:00.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.084 -07 000000501 INF: FPGA: Recv ZSGSRD 29860 17-03-18 05:22:00.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:00.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.094 -07 000000618 INF: FPGA: Recv ZSGSRD 29857 17-03-18 05:22:00.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:00.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.114 -07 000000501 INF: FPGA: Recv ZSGSRD 29861 17-03-18 05:22:00.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:00.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.124 -07 000000618 INF: FPGA: Recv ZSGSRD 29859 17-03-18 05:22:00.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:00.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29858 17-03-18 05:22:00.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-18 05:22:00.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.174 -07 000000579 INF: FPGA: Recv ZSGSRD 29856 17-03-18 05:22:00.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:00.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:00.184 -07 000000382 INF: FPGA: Recv ZSGSRD 29857 17-03-18 05:22:00.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:00.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:00.204 -07 000000579 INF: FPGA: Recv ZPIEZORD 25275 17-03-18 05:22:00.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:00.214 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V. 17-03-18 05:22:00.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29858 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29854 (-131.3 uncal um), Max = 29861 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:22:00.214 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29858, posNoise = 3, negNoise = 4 17-03-18 05:22:00.214 -07 000000610 INF: Z Motor: After move to -0.132131, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:00.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms) 17-03-18 05:22:00.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:00.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:00.214 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:00.214 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:00.214 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:00.214 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:00.214 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:00.214 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:00.214 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:00.214 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:00.214 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:00.214 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:00.214 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:00.224 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:00.224 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:00.224 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:00.234 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms. 17-03-18 05:22:00.234 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-18 05:22:00.234 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms. 17-03-18 05:22:00.234 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-18 05:22:00.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 29041 150\n [Camera] 17-03-18 05:22:00.444 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:00.634 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.997626, 17-03-18 05:22:00.884 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:00.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:00.884 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:00.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:00.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:00.884 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:00.884 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:00.884 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:22:00.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:00.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:22:01.074 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29041 822 17-03-18 05:22:01.224 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:01.274 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 05:22:01.274 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 05:22:01.274 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:01.274 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 05:22:01.274 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 05:22:01.274 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:01.284 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:01.284 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:01.284 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:22:01.284 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:22:01.434 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:01.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:01.434 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:01.434 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:01.434 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start. 17-03-18 05:22:01.434 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:01.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:01.434 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:01.434 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:01.434 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1161723208, 0x0, 418435064) start. 17-03-18 05:22:01.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:22:01.624 -07 000000579 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:01.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 29041 150' command took 2 ms to send, 1374 ms to get response, and 1381 ms overall 17-03-18 05:22:01.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:01.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132137478139834. ------ 17-03-18 05:22:01.634 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:01.634 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13893 mm 17-03-18 05:22:01.634 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:01.634 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-18 05:22:01.634 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm 17-03-18 05:22:01.634 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:01.634 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30350, sync = True, waitForSettling = False) 17-03-18 05:22:01.634 -07 000000467 INF: Z Motor: Moving to -0.138933 mm, started at -0.132137 mm, distance = -6.80 um 17-03-18 05:22:01.644 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:01.644 -07 000000467 INF: FPGA: Xmit ZDACW 30350\n [Z Motor] 17-03-18 05:22:01.644 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 05:22:01.654 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:01.654 -07 000000467 INF: FPGA: 'ZDACW 30350' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 05:22:01.654 -07 000000474 INF: FPGA: Recv YRDPOS 124380 17-03-18 05:22:01.664 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 05:22:01.664 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:01.664 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:01.664 -07 000000626 INF: Y Motor: Moving 1344 steps-21 17-03-18 05:22:01.664 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:01.674 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:01.674 -07 000000474 INF: FPGA: Recv ZDACR 30350 17-03-18 05:22:01.684 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:01.684 -07 000000467 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-18 05:22:01.684 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:01.754 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:01.834 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 05:22:01.834 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 05:22:01.834 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:01.834 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1161723208, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 05:22:01.834 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 05:22:01.834 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:01.844 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:01.844 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:01.844 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 05:22:01.844 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 05:22:01.864 -07 000000455 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:01.864 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall 17-03-18 05:22:02.054 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-18 05:22:02.054 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:22:02.104 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:02.114 -07 000000569 INF: FPGA: Recv YRDPOS 126081 17-03-18 05:22:02.114 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:02.114 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:02.114 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 05:22:02.114 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec 17-03-18 05:22:03.064 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:03.064 -07 000000424 INF: FPGA: Recv YRDPOS 126081 17-03-18 05:22:03.074 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:03.074 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:03.104 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:03.104 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:03.104 -07 000000626 INF: Y Motor: Moved to 61.5630 after 1468 ms (table move) 17-03-18 05:22:03.104 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138933 mm (DAC = 30350) 17-03-18 05:22:03.104 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.114 -07 000000625 INF: FPGA: Recv ZSGSRD 30920 17-03-18 05:22:03.114 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall 17-03-18 05:22:03.114 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.114 -07 000000461 INF: FPGA: Recv ZSGSRD 30909 17-03-18 05:22:03.124 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:03.124 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.124 -07 000000606 INF: FPGA: Recv ZSGSRD 30912 17-03-18 05:22:03.134 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.134 -07 000000608 INF: FPGA: Recv ZSGSRD 30916 17-03-18 05:22:03.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.144 -07 000000474 INF: FPGA: Recv ZSGSRD 30914 17-03-18 05:22:03.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.154 -07 000000581 INF: FPGA: Recv ZSGSRD 30915 17-03-18 05:22:03.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.164 -07 000000579 INF: FPGA: Recv ZSGSRD 30909 17-03-18 05:22:03.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.174 -07 000000447 INF: FPGA: Recv ZSGSRD 30919 17-03-18 05:22:03.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30924 17-03-18 05:22:03.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:03.194 -07 000000474 INF: FPGA: Recv ZSGSRD 30915 17-03-18 05:22:03.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.204 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:03.204 -07 000000581 INF: FPGA: Recv ZPIEZORD 26682 17-03-18 05:22:03.214 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:03.214 -07 000000618 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.3 V. 17-03-18 05:22:03.214 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30915 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30915 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30909 (-138.1 uncal um), Max = 30924 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:22:03.214 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30915, posNoise = 9, negNoise = 6 17-03-18 05:22:03.214 -07 000000618 INF: Z Motor: After move to -0.138933, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:03.214 -07 000000618 INF: Z Motor: Settle wait time = 1470 ms, measure time = 105 ms (allowed 150 ms), total time = 1575 ms 17-03-18 05:22:03.214 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:03.264 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms 17-03-18 05:22:03.264 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:03.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:03.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:03.284 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:03.284 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:03.304 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:03.304 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:03.304 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:03.304 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:03.314 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:03.314 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:03.314 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:22:03.314 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:22:03.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:03.364 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:03.664 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:03.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:03.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:03.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:03.704 -07 000000474 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:03.704 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:03.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:22:03.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:03.784 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:03.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:22:03.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:22:03.804 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:03.804 -07 000000467 INF: Autofocus start 17-03-18 05:22:03.804 -07 000000467 INF: MeasureProfile start 17-03-18 05:22:03.814 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:03.814 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall 17-03-18 05:22:03.814 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:03.814 -07 000000467 INF: MeasureProfile done 17-03-18 05:22:03.814 -07 000000467 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:03.814 -07 000000467 INF: Autofocus finished 17-03-18 05:22:04.014 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:04.014 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-18 05:22:04.014 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138927870373675. ---------- 17-03-18 05:22:04.024 -07 000000610 INF: Cycle 136 Tile 3 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:04.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28874, sync = True, waitForSettling = True) 17-03-18 05:22:04.024 -07 000000610 INF: Z Motor: Moving to -0.132177 mm, started at -0.138928 mm, distance = 6.75 um 17-03-18 05:22:04.024 -07 000000610 INF: FPGA: Xmit ZDACW 28874\n [Z Motor] 17-03-18 05:22:04.024 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 05:22:04.034 -07 000000610 INF: FPGA: 'ZDACW 28874' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:04.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:04.034 -07 000000512 INF: FPGA: Recv ZDACR 28874 17-03-18 05:22:04.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:04.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.194 -07 000000569 INF: FPGA: Recv ZSGSRD 29870 17-03-18 05:22:04.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:04.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.204 -07 000000474 INF: FPGA: Recv ZSGSRD 29866 17-03-18 05:22:04.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.214 -07 000000502 INF: FPGA: Recv ZSGSRD 29868 17-03-18 05:22:04.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29867 17-03-18 05:22:04.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.234 -07 000000461 INF: FPGA: Recv ZSGSRD 29860 17-03-18 05:22:04.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.244 -07 000000480 INF: FPGA: Recv ZSGSRD 29865 17-03-18 05:22:04.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.254 -07 000000382 INF: FPGA: Recv ZSGSRD 29866 17-03-18 05:22:04.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.264 -07 000000606 INF: FPGA: Recv ZSGSRD 29866 17-03-18 05:22:04.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.274 -07 000000501 INF: FPGA: Recv ZSGSRD 29861 17-03-18 05:22:04.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:04.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29863 17-03-18 05:22:04.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:04.294 -07 000000618 INF: FPGA: Recv ZPIEZORD 25344 17-03-18 05:22:04.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:04.304 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.9 V. 17-03-18 05:22:04.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29865 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29860 (-131.4 uncal um), Max = 29870 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:22:04.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29865, posNoise = 5, negNoise = 5 17-03-18 05:22:04.304 -07 000000610 INF: Z Motor: After move to -0.132177, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:04.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-18 05:22:04.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:04.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:04.304 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:04.304 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:04.304 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:04.304 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:04.304 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:04.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:04.304 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:04.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:04.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:04.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:04.314 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:04.314 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:04.314 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:04.314 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:04.324 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:22:04.324 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:22:04.324 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:22:04.324 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:22:04.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 29051 150\n [Camera] 17-03-18 05:22:04.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:04.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:04.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:04.964 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:04.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:04.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:04.964 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:04.964 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:04.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 05:22:04.964 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:04.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:22:05.154 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29051 822 17-03-18 05:22:05.304 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:05.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 05:22:05.364 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 05:22:05.364 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:05.364 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 05:22:05.364 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 05:22:05.364 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:05.364 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:22:05.364 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-18 05:22:05.364 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:05.374 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 05:22:05.514 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1183 17-03-18 05:22:05.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1183 17-03-18 05:22:05.514 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:05.514 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:05.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 05:22:05.514 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1183 17-03-18 05:22:05.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1183 17-03-18 05:22:05.514 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:05.514 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:05.514 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start. 17-03-18 05:22:05.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:22:05.704 -07 000000479 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:05.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 29051 150' command took 2 ms to send, 1375 ms to get response, and 1382 ms overall 17-03-18 05:22:05.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:05.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132182447624826. ------ 17-03-18 05:22:05.714 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:05.714 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13858 mm 17-03-18 05:22:05.714 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:05.714 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:05.714 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-18 05:22:05.714 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30273, sync = True, waitForSettling = False) 17-03-18 05:22:05.714 -07 000000480 INF: Z Motor: Moving to -0.138581 mm, started at -0.132182 mm, distance = -6.40 um 17-03-18 05:22:05.714 -07 000000467 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm 17-03-18 05:22:05.724 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:05.724 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:05.724 -07 000000512 INF: FPGA: Recv YRDPOS 126081 17-03-18 05:22:05.734 -07 000000480 INF: FPGA: Xmit ZDACW 30273\n [Z Motor] 17-03-18 05:22:05.734 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 05:22:05.734 -07 000000467 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:05.734 -07 000000467 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:05.734 -07 000000467 INF: Y Motor: Moving 1343 steps-20 17-03-18 05:22:05.734 -07 000000382 INF: FPGA: Recv ZDACW 17-03-18 05:22:05.744 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:05.744 -07 000000480 INF: FPGA: 'ZDACW 30273' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-18 05:22:05.754 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:05.764 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:05.764 -07 000000626 INF: FPGA: Recv ZDACR 30273 17-03-18 05:22:05.774 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:05.774 -07 000000480 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-18 05:22:05.904 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 388 ms. 17-03-18 05:22:05.904 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 05:22:05.904 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:05.904 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 05:22:05.904 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 05:22:05.904 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:05.914 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:05.914 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:22:05.914 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 05:22:05.914 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 05:22:05.944 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:05.944 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:22:05.994 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.000345, 17-03-18 05:22:06.124 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 05:22:06.124 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall 17-03-18 05:22:06.174 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:06.184 -07 000000479 INF: FPGA: Recv YRDPOS 127784 17-03-18 05:22:06.184 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall 17-03-18 05:22:06.184 -07 000000467 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:06.184 -07 000000467 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-18 05:22:06.184 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec 17-03-18 05:22:06.754 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:06.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:07.134 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:07.134 -07 000000461 INF: FPGA: Recv YRDPOS 127784 17-03-18 05:22:07.144 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:07.144 -07 000000467 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:07.174 -07 000000467 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:07.174 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:07.174 -07 000000467 INF: Y Motor: Moved to 62.3945 after 1458 ms (table move) 17-03-18 05:22:07.174 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138581 mm (DAC = 30273) 17-03-18 05:22:07.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.174 -07 000000424 INF: FPGA: Recv ZSGSRD 30867 17-03-18 05:22:07.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 05:22:07.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.184 -07 000000569 INF: FPGA: Recv ZSGSRD 30872 17-03-18 05:22:07.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.194 -07 000000447 INF: FPGA: Recv ZSGSRD 30858 17-03-18 05:22:07.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.204 -07 000000608 INF: FPGA: Recv ZSGSRD 30855 17-03-18 05:22:07.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.214 -07 000000569 INF: FPGA: Recv ZSGSRD 30856 17-03-18 05:22:07.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.224 -07 000000447 INF: FPGA: Recv ZSGSRD 30865 17-03-18 05:22:07.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.234 -07 000000581 INF: FPGA: Recv ZSGSRD 30864 17-03-18 05:22:07.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.244 -07 000000618 INF: FPGA: Recv ZSGSRD 30865 17-03-18 05:22:07.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.254 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30864 17-03-18 05:22:07.264 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.264 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:07.264 -07 000000424 INF: FPGA: Recv ZSGSRD 30863 17-03-18 05:22:07.274 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.274 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:07.274 -07 000000382 INF: FPGA: Recv ZPIEZORD 26660 17-03-18 05:22:07.284 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:07.284 -07 000000501 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.2 V. 17-03-18 05:22:07.284 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30863 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30864 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30855 (-137.7 uncal um), Max = 30872 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:22:07.284 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30863, posNoise = 9, negNoise = 8 17-03-18 05:22:07.284 -07 000000501 INF: Z Motor: After move to -0.138581, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:07.284 -07 000000501 INF: Z Motor: Settle wait time = 1461 ms, measure time = 103 ms (allowed 150 ms), total time = 1564 ms 17-03-18 05:22:07.284 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:07.334 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms 17-03-18 05:22:07.334 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:07.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:07.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:07.334 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:07.334 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:07.334 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:07.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:07.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:07.334 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:07.344 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:07.344 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:07.344 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:22:07.344 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:22:07.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:07.394 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:07.694 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:07.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:07.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:07.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start. 17-03-18 05:22:07.734 -07 000000479 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:07.734 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:07.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:22:07.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:22:07.814 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:07.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:07.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:22:07.834 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:07.834 -07 000000502 INF: Autofocus start 17-03-18 05:22:07.834 -07 000000502 INF: MeasureProfile start 17-03-18 05:22:07.844 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:07.844 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:07.844 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:07.854 -07 000000502 INF: MeasureProfile done 17-03-18 05:22:07.854 -07 000000502 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:07.864 -07 000000502 INF: Autofocus finished 17-03-18 05:22:08.044 -07 000000608 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:08.044 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 05:22:08.054 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138593811342303. ---------- 17-03-18 05:22:08.054 -07 000000610 INF: Cycle 136 Tile 4 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:08.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28797, sync = True, waitForSettling = True) 17-03-18 05:22:08.054 -07 000000610 INF: Z Motor: Moving to -0.131824 mm, started at -0.138594 mm, distance = 6.77 um 17-03-18 05:22:08.054 -07 000000610 INF: FPGA: Xmit ZDACW 28797\n [Z Motor] 17-03-18 05:22:08.054 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 05:22:08.064 -07 000000610 INF: FPGA: 'ZDACW 28797' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:08.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:08.064 -07 000000474 INF: FPGA: Recv ZDACR 28797 17-03-18 05:22:08.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:08.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29810 17-03-18 05:22:08.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.234 -07 000000447 INF: FPGA: Recv ZSGSRD 29812 17-03-18 05:22:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.244 -07 000000480 INF: FPGA: Recv ZSGSRD 29808 17-03-18 05:22:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29806 17-03-18 05:22:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.264 -07 000000626 INF: FPGA: Recv ZSGSRD 29812 17-03-18 05:22:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.274 -07 000000512 INF: FPGA: Recv ZSGSRD 29810 17-03-18 05:22:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.284 -07 000000618 INF: FPGA: Recv ZSGSRD 29806 17-03-18 05:22:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.294 -07 000000479 INF: FPGA: Recv ZSGSRD 29800 17-03-18 05:22:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.304 -07 000000382 INF: FPGA: Recv ZSGSRD 29816 17-03-18 05:22:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:08.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29816 17-03-18 05:22:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:08.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:08.324 -07 000000502 INF: FPGA: Recv ZPIEZORD 25293 17-03-18 05:22:08.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:08.334 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.9 V. 17-03-18 05:22:08.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29810 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29800 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 05:22:08.334 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29810, posNoise = 6, negNoise = 10 17-03-18 05:22:08.334 -07 000000610 INF: Z Motor: After move to -0.131824, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:08.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 05:22:08.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:08.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:08.334 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:08.334 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:08.344 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:08.344 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:08.344 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:08.344 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:08.344 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:08.344 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:08.344 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:08.344 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:08.344 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:08.344 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:08.344 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:22:08.344 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:08.364 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 05:22:08.364 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:22:08.364 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-18 05:22:08.364 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:22:08.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28974 150\n [Camera] 17-03-18 05:22:08.564 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:09.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:09.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:09.004 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:09.004 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:09.004 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:22:09.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:09.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:09.004 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:09.004 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:09.004 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:22:09.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28974 822 17-03-18 05:22:09.344 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:09.404 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 05:22:09.404 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 05:22:09.404 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:09.404 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 05:22:09.404 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 05:22:09.404 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:09.404 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:09.404 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:22:09.414 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:09.414 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 05:22:09.554 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:09.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:09.554 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:09.554 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:09.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-18 05:22:09.554 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:09.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:09.554 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:09.554 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:09.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:22:09.744 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:22:09.744 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:09.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28974 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:22:09.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:09.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131829115957029. ------ 17-03-18 05:22:09.874 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13831 mm 17-03-18 05:22:09.874 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:09.874 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:09.884 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30214, sync = True, waitForSettling = False) 17-03-18 05:22:09.884 -07 000000502 INF: Z Motor: Moving to -0.138311 mm, started at -0.131829 mm, distance = -6.48 um 17-03-18 05:22:09.884 -07 000000502 INF: FPGA: Xmit ZDACW 30214\n [Z Motor] 17-03-18 05:22:09.884 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-18 05:22:09.884 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm 17-03-18 05:22:09.884 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:09.884 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall 17-03-18 05:22:09.884 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:22:09.894 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:09.894 -07 000000502 INF: FPGA: 'ZDACW 30214' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:09.894 -07 000000424 INF: FPGA: Recv YRDPOS 127785 17-03-18 05:22:09.904 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:09.904 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:22:09.904 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:09.904 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:09.904 -07 000000512 INF: Y Motor: Moving 1340 steps-17 17-03-18 05:22:09.914 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:09.914 -07 000000424 INF: FPGA: Recv ZDACR 30214 17-03-18 05:22:09.924 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:09.924 -07 000000502 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-18 05:22:09.924 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:09.964 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms. 17-03-18 05:22:09.964 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 05:22:09.964 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:09.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 407 ms. 17-03-18 05:22:09.964 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-18 05:22:09.964 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:09.974 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 05:22:09.974 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms. 17-03-18 05:22:09.974 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:09.974 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms. 17-03-18 05:22:10.104 -07 000000455 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:10.104 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall 17-03-18 05:22:10.294 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 05:22:10.294 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 05:22:10.344 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:10.354 -07 000000474 INF: FPGA: Recv YRDPOS 129480 17-03-18 05:22:10.354 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:10.354 -07 000000512 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:10.354 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 05:22:10.354 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.133 mm/sec 17-03-18 05:22:11.304 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:11.304 -07 000000625 INF: FPGA: Recv YRDPOS 129481 17-03-18 05:22:11.314 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:11.314 -07 000000512 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:11.344 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:11.344 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:22:11.344 -07 000000512 INF: Y Motor: Moved to 63.2231 after 1459 ms (table move) 17-03-18 05:22:11.344 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138311 mm (DAC = 30214) 17-03-18 05:22:11.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.354 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.004458, 17-03-18 05:22:11.354 -07 000000447 INF: FPGA: Recv ZSGSRD 30827 17-03-18 05:22:11.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 05:22:11.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.364 -07 000000618 INF: FPGA: Recv ZSGSRD 30823 17-03-18 05:22:11.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.384 -07 000000626 INF: FPGA: Recv ZSGSRD 30822 17-03-18 05:22:11.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:11.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.414 -07 000000625 INF: FPGA: Recv ZSGSRD 30810 17-03-18 05:22:11.424 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:11.424 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.424 -07 000000480 INF: FPGA: Recv ZSGSRD 30823 17-03-18 05:22:11.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.444 -07 000000501 INF: FPGA: Recv ZSGSRD 30822 17-03-18 05:22:11.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:11.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.454 -07 000000455 INF: FPGA: Recv ZSGSRD 30822 17-03-18 05:22:11.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.464 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.464 -07 000000626 INF: FPGA: Recv ZSGSRD 30819 17-03-18 05:22:11.474 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.474 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.474 -07 000000606 INF: FPGA: Recv ZSGSRD 30818 17-03-18 05:22:11.484 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.484 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:11.484 -07 000000467 INF: FPGA: Recv ZSGSRD 30815 17-03-18 05:22:11.494 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.494 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:11.494 -07 000000501 INF: FPGA: Recv ZPIEZORD 26639 17-03-18 05:22:11.504 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:11.504 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.2 V. 17-03-18 05:22:11.504 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30820 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30810 (-137.5 uncal um), Max = 30827 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 05:22:11.504 -07 000000579 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30820, posNoise = 7, negNoise = 10 17-03-18 05:22:11.504 -07 000000579 INF: Z Motor: After move to -0.138311, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:11.504 -07 000000579 INF: Z Motor: Settle wait time = 1464 ms, measure time = 154 ms (allowed 150 ms), total time = 1618 ms 17-03-18 05:22:11.504 -07 000000579 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms 17-03-18 05:22:11.504 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms 17-03-18 05:22:11.504 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:11.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:11.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:11.504 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:11.504 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:11.504 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:11.504 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:11.504 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 05:22:11.504 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:11.514 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:11.514 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:11.514 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:22:11.514 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 05:22:11.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:11.564 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:11.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:11.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:11.864 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:11.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:11.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:11.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:11.904 -07 000000447 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:11.904 -07 000000625 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:11.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:22:11.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:22:11.984 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:11.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:11.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:22:12.004 -07 000000461 INF: Autofocus start 17-03-18 05:22:12.004 -07 000000461 INF: MeasureProfile start 17-03-18 05:22:12.004 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:12.004 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:12.014 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:12.014 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:12.014 -07 000000461 INF: MeasureProfile done 17-03-18 05:22:12.014 -07 000000461 INF: X=48 Z correction [um]=0.2069503 17-03-18 05:22:12.014 -07 000000461 INF: Autofocus finished 17-03-18 05:22:12.214 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:12.214 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall 17-03-18 05:22:12.214 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138317570220208. ---------- 17-03-18 05:22:12.224 -07 000000610 INF: Cycle 136 Tile 5 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:12.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28771, sync = True, waitForSettling = True) 17-03-18 05:22:12.224 -07 000000610 INF: Z Motor: Moving to -0.131705 mm, started at -0.138318 mm, distance = 6.61 um 17-03-18 05:22:12.224 -07 000000610 INF: FPGA: Xmit ZDACW 28771\n [Z Motor] 17-03-18 05:22:12.224 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 05:22:12.234 -07 000000610 INF: FPGA: 'ZDACW 28771' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:12.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:12.234 -07 000000474 INF: FPGA: Recv ZDACR 28771 17-03-18 05:22:12.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:12.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.394 -07 000000512 INF: FPGA: Recv ZSGSRD 29793 17-03-18 05:22:12.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:12.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.404 -07 000000479 INF: FPGA: Recv ZSGSRD 29791 17-03-18 05:22:12.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.414 -07 000000455 INF: FPGA: Recv ZSGSRD 29790 17-03-18 05:22:12.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.424 -07 000000569 INF: FPGA: Recv ZSGSRD 29788 17-03-18 05:22:12.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29793 17-03-18 05:22:12.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.444 -07 000000618 INF: FPGA: Recv ZSGSRD 29791 17-03-18 05:22:12.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.454 -07 000000606 INF: FPGA: Recv ZSGSRD 29789 17-03-18 05:22:12.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.464 -07 000000581 INF: FPGA: Recv ZSGSRD 29791 17-03-18 05:22:12.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.474 -07 000000579 INF: FPGA: Recv ZSGSRD 29790 17-03-18 05:22:12.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:12.484 -07 000000625 INF: FPGA: Recv ZSGSRD 29785 17-03-18 05:22:12.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:12.494 -07 000000512 INF: FPGA: Recv ZPIEZORD 25292 17-03-18 05:22:12.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:12.504 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.9 V. 17-03-18 05:22:12.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29790 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29785 (-130.9 uncal um), Max = 29793 (-130.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:22:12.504 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29790, posNoise = 3, negNoise = 5 17-03-18 05:22:12.504 -07 000000610 INF: Z Motor: After move to -0.131705, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:12.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:22:12.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:12.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:12.514 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:12.514 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:12.514 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:12.514 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:12.514 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:12.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:12.514 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:12.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:12.514 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:12.514 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:12.514 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 05:22:12.514 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:12.514 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:22:12.514 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:12.534 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 05:22:12.534 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:22:12.534 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 05:22:12.534 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:22:12.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28948 150\n [Camera] 17-03-18 05:22:12.734 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:13.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:13.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:13.174 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:13.174 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:13.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:13.174 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:13.184 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:13.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:22:13.194 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:13.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:22:13.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28948 822 17-03-18 05:22:13.514 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:13.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 05:22:13.574 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 05:22:13.574 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:13.574 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:13.574 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:22:13.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms. 17-03-18 05:22:13.584 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 05:22:13.584 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:13.584 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:13.594 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 05:22:13.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:13.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:13.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:13.724 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:13.724 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start. 17-03-18 05:22:13.724 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:13.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:13.734 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:13.734 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:13.734 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start. 17-03-18 05:22:13.914 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:13.914 -07 000000579 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:13.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28948 150' command took 4 ms to send, 1369 ms to get response, and 1382 ms overall 17-03-18 05:22:13.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:13.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131700631714194. ------ 17-03-18 05:22:13.924 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13806 mm 17-03-18 05:22:13.924 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:13.924 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:14.044 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:14.054 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 122 ms to send, 0 ms to get response, and 124 ms overall 17-03-18 05:22:14.054 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-18 05:22:14.054 -07 000000606 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm 17-03-18 05:22:14.054 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:14.054 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30158, sync = True, waitForSettling = False) 17-03-18 05:22:14.054 -07 000000579 INF: Z Motor: Moving to -0.138054 mm, started at -0.131701 mm, distance = -6.35 um 17-03-18 05:22:14.064 -07 000000579 INF: FPGA: Xmit ZDACW 30158\n [Z Motor] 17-03-18 05:22:14.064 -07 000000618 INF: FPGA: Recv ZDACW 17-03-18 05:22:14.074 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:14.074 -07 000000579 INF: FPGA: 'ZDACW 30158' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 05:22:14.074 -07 000000608 INF: FPGA: Recv YRDPOS 129481 17-03-18 05:22:14.084 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:14.084 -07 000000606 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:14.084 -07 000000606 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:14.084 -07 000000606 INF: Y Motor: Moving 1343 steps-20 17-03-18 05:22:14.084 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:14.084 -07 000000382 INF: FPGA: Recv ZDACR 30158 17-03-18 05:22:14.094 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:14.094 -07 000000579 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-18 05:22:14.094 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:14.134 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 402 ms. 17-03-18 05:22:14.134 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:22:14.134 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:14.134 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 406 ms. 17-03-18 05:22:14.134 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 05:22:14.134 -07 000000479 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:14.134 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:14.144 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:22:14.144 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-18 05:22:14.144 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 05:22:14.254 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:14.254 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:14.464 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 05:22:14.464 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 05:22:14.514 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:14.524 -07 000000625 INF: FPGA: Recv YRDPOS 131187 17-03-18 05:22:14.524 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:22:14.524 -07 000000606 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:14.524 -07 000000606 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm) 17-03-18 05:22:14.524 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.164 mm/sec 17-03-18 05:22:15.474 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:15.474 -07 000000502 INF: FPGA: Recv YRDPOS 131188 17-03-18 05:22:15.484 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.484 -07 000000606 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:15.504 -07 000000606 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:15.504 -07 000000606 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:22:15.504 -07 000000606 INF: Y Motor: Moved to 64.0566 after 1458 ms (table move) 17-03-18 05:22:15.514 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138054 mm (DAC = 30158) 17-03-18 05:22:15.514 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.514 -07 000000467 INF: FPGA: Recv ZSGSRD 30779 17-03-18 05:22:15.524 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:15.524 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.524 -07 000000512 INF: FPGA: Recv ZSGSRD 30787 17-03-18 05:22:15.534 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.534 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30775 17-03-18 05:22:15.544 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.544 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30780 17-03-18 05:22:15.554 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.554 -07 000000502 INF: FPGA: Recv ZSGSRD 30775 17-03-18 05:22:15.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.564 -07 000000467 INF: FPGA: Recv ZSGSRD 30774 17-03-18 05:22:15.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.574 -07 000000579 INF: FPGA: Recv ZSGSRD 30780 17-03-18 05:22:15.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.584 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.584 -07 000000479 INF: FPGA: Recv ZSGSRD 30780 17-03-18 05:22:15.594 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.594 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.594 -07 000000569 INF: FPGA: Recv ZSGSRD 30788 17-03-18 05:22:15.604 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.604 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:15.604 -07 000000625 INF: FPGA: Recv ZSGSRD 30784 17-03-18 05:22:15.614 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.614 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:15.614 -07 000000581 INF: FPGA: Recv ZPIEZORD 26576 17-03-18 05:22:15.624 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:15.624 -07 000000461 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V. 17-03-18 05:22:15.624 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30780 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30774 (-137.2 uncal um), Max = 30788 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:22:15.624 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30780, posNoise = 8, negNoise = 6 17-03-18 05:22:15.624 -07 000000461 INF: Z Motor: After move to -0.138054, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:15.624 -07 000000461 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms 17-03-18 05:22:15.624 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:15.674 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms 17-03-18 05:22:15.674 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:15.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:15.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:15.674 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:15.684 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:15.684 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:15.684 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:15.684 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:15.684 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:15.684 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:15.684 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:15.694 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:22:15.694 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:22:15.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:15.734 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:16.034 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:16.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:16.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:16.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:16.074 -07 000000467 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:16.074 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:16.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 05:22:16.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:22:16.154 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:16.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 05:22:16.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:22:16.174 -07 000000625 INF: Autofocus start 17-03-18 05:22:16.174 -07 000000625 INF: MeasureProfile start 17-03-18 05:22:16.174 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:16.174 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:16.184 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:16.184 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:16.184 -07 000000625 INF: MeasureProfile done 17-03-18 05:22:16.184 -07 000000625 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:16.184 -07 000000625 INF: Autofocus finished 17-03-18 05:22:16.384 -07 000000455 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:16.384 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall 17-03-18 05:22:16.394 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138060601734537. ---------- 17-03-18 05:22:16.394 -07 000000610 INF: Cycle 136 Tile 6 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:16.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28683, sync = True, waitForSettling = True) 17-03-18 05:22:16.394 -07 000000610 INF: Z Motor: Moving to -0.131302 mm, started at -0.138061 mm, distance = 6.76 um 17-03-18 05:22:16.394 -07 000000610 INF: FPGA: Xmit ZDACW 28683\n [Z Motor] 17-03-18 05:22:16.394 -07 000000461 INF: FPGA: Recv ZDACW 17-03-18 05:22:16.404 -07 000000610 INF: FPGA: 'ZDACW 28683' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:22:16.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:16.404 -07 000000467 INF: FPGA: Recv ZDACR 28683 17-03-18 05:22:16.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.564 -07 000000424 INF: FPGA: Recv ZSGSRD 29735 17-03-18 05:22:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29728 17-03-18 05:22:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.584 -07 000000618 INF: FPGA: Recv ZSGSRD 29722 17-03-18 05:22:16.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.594 -07 000000501 INF: FPGA: Recv ZSGSRD 29733 17-03-18 05:22:16.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.604 -07 000000502 INF: FPGA: Recv ZSGSRD 29734 17-03-18 05:22:16.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.614 -07 000000579 INF: FPGA: Recv ZSGSRD 29729 17-03-18 05:22:16.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29731 17-03-18 05:22:16.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.634 -07 000000581 INF: FPGA: Recv ZSGSRD 29726 17-03-18 05:22:16.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.644 -07 000000479 INF: FPGA: Recv ZSGSRD 29732 17-03-18 05:22:16.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:16.654 -07 000000569 INF: FPGA: Recv ZSGSRD 29730 17-03-18 05:22:16.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:16.664 -07 000000455 INF: FPGA: Recv ZPIEZORD 25226 17-03-18 05:22:16.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:16.674 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V. 17-03-18 05:22:16.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29730 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29730 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29722 (-130.5 uncal um), Max = 29735 (-130.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:22:16.674 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29730, posNoise = 5, negNoise = 8 17-03-18 05:22:16.674 -07 000000610 INF: Z Motor: After move to -0.131302, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:16.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-18 05:22:16.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:16.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:16.674 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:16.674 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:16.674 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:16.674 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:16.674 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:16.674 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:16.674 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:16.674 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:16.674 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:16.674 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:16.684 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:16.684 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:16.684 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:16.684 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:16.684 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:22:16.684 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:22:16.694 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:22:16.694 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:22:16.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28859 150\n [Camera] 17-03-18 05:22:16.754 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:16.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:16.764 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.996267, 17-03-18 05:22:16.894 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:17.334 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:17.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:17.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:17.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:17.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start. 17-03-18 05:22:17.334 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:17.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:17.334 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:17.334 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:17.334 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 05:22:17.524 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28859 822 17-03-18 05:22:17.674 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:17.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 05:22:17.734 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:22:17.734 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:17.734 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 05:22:17.734 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 05:22:17.734 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:17.734 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:17.734 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:22:17.744 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:17.744 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 05:22:17.884 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1185 17-03-18 05:22:17.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1185 17-03-18 05:22:17.884 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:17.894 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:17.894 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 05:22:17.894 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1185 17-03-18 05:22:17.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1185 17-03-18 05:22:17.894 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:17.894 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:17.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 05:22:18.074 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:18.074 -07 000000424 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:18.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28859 150' command took 2 ms to send, 1377 ms to get response, and 1382 ms overall 17-03-18 05:22:18.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:18.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131315178985688. ------ 17-03-18 05:22:18.084 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:18.084 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13776 mm 17-03-18 05:22:18.084 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:18.084 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:18.084 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-18 05:22:18.084 -07 000000625 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm 17-03-18 05:22:18.084 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30095, sync = True, waitForSettling = False) 17-03-18 05:22:18.084 -07 000000502 INF: Z Motor: Moving to -0.137766 mm, started at -0.131315 mm, distance = -6.45 um 17-03-18 05:22:18.094 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:18.094 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:18.094 -07 000000474 INF: FPGA: Recv YRDPOS 131188 17-03-18 05:22:18.104 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:18.104 -07 000000625 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:18.104 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:18.104 -07 000000625 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:18.104 -07 000000625 INF: Y Motor: Moving 1338 steps-13 17-03-18 05:22:18.114 -07 000000502 INF: FPGA: Xmit ZDACW 30095\n [Z Motor] 17-03-18 05:22:18.114 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 05:22:18.124 -07 000000502 INF: FPGA: 'ZDACW 30095' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 05:22:18.124 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:18.134 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:18.134 -07 000000626 INF: FPGA: Recv ZDACR 30095 17-03-18 05:22:18.144 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:18.144 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-18 05:22:18.294 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms. 17-03-18 05:22:18.294 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 05:22:18.294 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:18.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 05:22:18.294 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:22:18.294 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:18.304 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:18.304 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:18.304 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 05:22:18.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-18 05:22:18.304 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-18 05:22:18.304 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 05:22:18.494 -07 000000467 INF: FPGA: Recv YMVTILE 17-03-18 05:22:18.494 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:22:18.544 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:18.554 -07 000000618 INF: FPGA: Recv YRDPOS 132871 17-03-18 05:22:18.554 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:18.554 -07 000000625 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:18.554 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-18 05:22:18.554 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec 17-03-18 05:22:19.504 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:19.504 -07 000000467 INF: FPGA: Recv YRDPOS 132871 17-03-18 05:22:19.514 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:19.514 -07 000000625 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:19.544 -07 000000625 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:19.544 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:19.544 -07 000000625 INF: Y Motor: Moved to 64.8784 after 1452 ms (table move) 17-03-18 05:22:19.544 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137766 mm (DAC = 30095) 17-03-18 05:22:19.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.544 -07 000000382 INF: FPGA: Recv ZSGSRD 30745 17-03-18 05:22:19.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:22:19.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.554 -07 000000618 INF: FPGA: Recv ZSGSRD 30741 17-03-18 05:22:19.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30738 17-03-18 05:22:19.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30738 17-03-18 05:22:19.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.584 -07 000000625 INF: FPGA: Recv ZSGSRD 30732 17-03-18 05:22:19.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.594 -07 000000382 INF: FPGA: Recv ZSGSRD 30733 17-03-18 05:22:19.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.604 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.604 -07 000000461 INF: FPGA: Recv ZSGSRD 30734 17-03-18 05:22:19.614 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.614 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.614 -07 000000569 INF: FPGA: Recv ZSGSRD 30728 17-03-18 05:22:19.624 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.624 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.624 -07 000000581 INF: FPGA: Recv ZSGSRD 30734 17-03-18 05:22:19.634 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.634 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:19.634 -07 000000501 INF: FPGA: Recv ZSGSRD 30739 17-03-18 05:22:19.644 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.644 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:19.644 -07 000000618 INF: FPGA: Recv ZPIEZORD 26526 17-03-18 05:22:19.654 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:19.654 -07 000000608 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.3 V. 17-03-18 05:22:19.654 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30736 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30728 (-136.9 uncal um), Max = 30745 (-137.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:22:19.654 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30736, posNoise = 9, negNoise = 8 17-03-18 05:22:19.654 -07 000000608 INF: Z Motor: After move to -0.137766, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:19.654 -07 000000608 INF: Z Motor: Settle wait time = 1455 ms, measure time = 106 ms (allowed 150 ms), total time = 1561 ms 17-03-18 05:22:19.654 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:19.704 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-18 05:22:19.704 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:19.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:19.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:19.704 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:19.704 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:19.704 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:19.704 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:19.704 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:19.704 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:19.704 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:19.704 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:19.724 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 05:22:19.724 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 05:22:19.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:19.774 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:20.074 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:20.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:20.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:20.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) start. 17-03-18 05:22:20.104 -07 000000455 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:20.114 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:20.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-18 05:22:20.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:20.184 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:20.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:20.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:22:20.214 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:20.214 -07 000000461 INF: Autofocus start 17-03-18 05:22:20.214 -07 000000461 INF: MeasureProfile start 17-03-18 05:22:20.214 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:20.224 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:20.224 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:20.224 -07 000000461 INF: MeasureProfile done 17-03-18 05:22:20.224 -07 000000461 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:20.224 -07 000000461 INF: Autofocus finished 17-03-18 05:22:20.424 -07 000000474 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:20.424 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:20.424 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.1377779364003. ---------- 17-03-18 05:22:20.424 -07 000000610 INF: Cycle 136 Tile 7 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:20.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28619, sync = True, waitForSettling = True) 17-03-18 05:22:20.434 -07 000000610 INF: Z Motor: Moving to -0.131009 mm, started at -0.137778 mm, distance = 6.77 um 17-03-18 05:22:20.434 -07 000000610 INF: FPGA: Xmit ZDACW 28619\n [Z Motor] 17-03-18 05:22:20.434 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:22:20.444 -07 000000610 INF: FPGA: 'ZDACW 28619' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:22:20.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:20.444 -07 000000479 INF: FPGA: Recv ZDACR 28619 17-03-18 05:22:20.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:20.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29685 17-03-18 05:22:20.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.614 -07 000000579 INF: FPGA: Recv ZSGSRD 29678 17-03-18 05:22:20.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.624 -07 000000606 INF: FPGA: Recv ZSGSRD 29679 17-03-18 05:22:20.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.634 -07 000000382 INF: FPGA: Recv ZSGSRD 29681 17-03-18 05:22:20.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.644 -07 000000502 INF: FPGA: Recv ZSGSRD 29682 17-03-18 05:22:20.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.654 -07 000000626 INF: FPGA: Recv ZSGSRD 29681 17-03-18 05:22:20.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.664 -07 000000581 INF: FPGA: Recv ZSGSRD 29677 17-03-18 05:22:20.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.674 -07 000000606 INF: FPGA: Recv ZSGSRD 29688 17-03-18 05:22:20.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.684 -07 000000382 INF: FPGA: Recv ZSGSRD 29685 17-03-18 05:22:20.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:20.694 -07 000000618 INF: FPGA: Recv ZSGSRD 29683 17-03-18 05:22:20.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:20.704 -07 000000455 INF: FPGA: Recv ZPIEZORD 25168 17-03-18 05:22:20.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:20.714 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.9 V. 17-03-18 05:22:20.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29677 (-130.2 uncal um), Max = 29688 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:22:20.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 6, negNoise = 5 17-03-18 05:22:20.714 -07 000000610 INF: Z Motor: After move to -0.131009, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:20.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:22:20.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:20.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:20.714 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:20.714 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:20.714 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:20.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:20.714 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:20.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:20.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:22:20.714 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:20.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:20.714 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:20.714 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:22:20.724 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:20.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 05:22:20.724 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:20.734 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 05:22:20.734 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:22:20.734 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-18 05:22:20.734 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 05:22:20.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28796 150\n [Camera] 17-03-18 05:22:20.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:21.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:21.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:21.374 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:21.374 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:21.374 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:22:21.374 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:21.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:21.384 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:21.384 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:21.384 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:22:21.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28796 822 17-03-18 05:22:21.714 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:21.754 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:21.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:21.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 05:22:21.754 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 05:22:21.754 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:21.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms. 17-03-18 05:22:21.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-18 05:22:21.764 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:21.764 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 05:22:21.764 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 05:22:21.764 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 05:22:21.774 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 05:22:21.924 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:21.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:21.934 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:21.934 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:21.934 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-18 05:22:21.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:21.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:21.934 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:21.934 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:21.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:22:22.124 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:22.124 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.007176, 17-03-18 05:22:22.124 -07 000000581 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:22.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28796 150' command took 2 ms to send, 1371 ms to get response, and 1381 ms overall 17-03-18 05:22:22.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:22.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131006816802884. ------ 17-03-18 05:22:22.124 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13769 mm 17-03-18 05:22:22.124 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:22.124 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30079, sync = True, waitForSettling = False) 17-03-18 05:22:22.134 -07 000000512 INF: Z Motor: Moving to -0.137693 mm, started at -0.131007 mm, distance = -6.69 um 17-03-18 05:22:22.134 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-18 05:22:22.134 -07 000000581 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm 17-03-18 05:22:22.254 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:22.254 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:22.264 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 133 ms overall 17-03-18 05:22:22.264 -07 000000512 INF: FPGA: Xmit ZDACW 30079\n [Z Motor] 17-03-18 05:22:22.264 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:22:22.274 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:22.274 -07 000000512 INF: FPGA: 'ZDACW 30079' command took 0 ms to send, 0 ms to get response, and 139 ms overall 17-03-18 05:22:22.274 -07 000000501 INF: FPGA: Recv YRDPOS 132871 17-03-18 05:22:22.284 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 149 ms overall 17-03-18 05:22:22.284 -07 000000581 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:22.284 -07 000000581 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:22.284 -07 000000581 INF: Y Motor: Moving 1351 steps-29 17-03-18 05:22:22.294 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:22.304 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:22.304 -07 000000618 INF: FPGA: Recv ZDACR 30079 17-03-18 05:22:22.314 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:22.314 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall 17-03-18 05:22:22.314 -07 000000512 INF: Z Motor: MoveAbsStepped took 180 ms (did NOT wait for settling yet)) 17-03-18 05:22:22.314 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 05:22:22.314 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 05:22:22.314 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:22.324 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms. 17-03-18 05:22:22.324 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 05:22:22.324 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:22.324 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:22.324 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:22:22.324 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:22:22.334 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 05:22:22.494 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:22.494 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall 17-03-18 05:22:22.684 -07 000000579 INF: FPGA: Recv YMVTILE 17-03-18 05:22:22.684 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 408 ms overall 17-03-18 05:22:22.734 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:22.744 -07 000000606 INF: FPGA: Recv YRDPOS 134581 17-03-18 05:22:22.744 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:22:22.744 -07 000000581 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:22.744 -07 000000581 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-18 05:22:22.744 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.844 mm, average velocity = 2.069 mm/sec 17-03-18 05:22:23.694 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:23.694 -07 000000474 INF: FPGA: Recv YRDPOS 134581 17-03-18 05:22:23.704 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:23.704 -07 000000581 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:23.734 -07 000000581 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:23.734 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:23.734 -07 000000581 INF: Y Motor: Moved to 65.7134 after 1607 ms (table move) 17-03-18 05:22:23.744 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137693 mm (DAC = 30079) 17-03-18 05:22:23.744 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.744 -07 000000608 INF: FPGA: Recv ZSGSRD 30729 17-03-18 05:22:23.754 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.754 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.754 -07 000000512 INF: FPGA: Recv ZSGSRD 30727 17-03-18 05:22:23.764 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.764 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.764 -07 000000502 INF: FPGA: Recv ZSGSRD 30719 17-03-18 05:22:23.774 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.774 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.774 -07 000000569 INF: FPGA: Recv ZSGSRD 30715 17-03-18 05:22:23.784 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.784 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.784 -07 000000606 INF: FPGA: Recv ZSGSRD 30724 17-03-18 05:22:23.794 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.794 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.794 -07 000000608 INF: FPGA: Recv ZSGSRD 30719 17-03-18 05:22:23.804 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.804 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.804 -07 000000447 INF: FPGA: Recv ZSGSRD 30729 17-03-18 05:22:23.814 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.814 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.814 -07 000000502 INF: FPGA: Recv ZSGSRD 30725 17-03-18 05:22:23.824 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.824 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.824 -07 000000480 INF: FPGA: Recv ZSGSRD 30729 17-03-18 05:22:23.834 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.834 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:23.834 -07 000000606 INF: FPGA: Recv ZSGSRD 30728 17-03-18 05:22:23.844 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.844 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:23.844 -07 000000474 INF: FPGA: Recv ZPIEZORD 26518 17-03-18 05:22:23.854 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:23.854 -07 000000625 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.2 V. 17-03-18 05:22:23.854 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30724 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30715 (-136.8 uncal um), Max = 30729 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 05:22:23.854 -07 000000625 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30724, posNoise = 5, negNoise = 9 17-03-18 05:22:23.854 -07 000000625 INF: Z Motor: After move to -0.137693, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:23.854 -07 000000625 INF: Z Motor: Settle wait time = 1610 ms, measure time = 111 ms (allowed 150 ms), total time = 1721 ms 17-03-18 05:22:23.854 -07 000000625 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:23.894 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1763 ms 17-03-18 05:22:23.894 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:23.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:23.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:23.894 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:23.894 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:23.894 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:23.894 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:23.894 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:23.894 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:23.904 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:23.904 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:23.914 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-18 05:22:23.914 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 05:22:23.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:23.964 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:24.264 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:24.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:24.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:24.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:24.294 -07 000000608 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:24.304 -07 000000424 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:24.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall 17-03-18 05:22:24.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:24.384 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:24.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:24.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:22:24.404 -07 000000461 INF: Autofocus start 17-03-18 05:22:24.404 -07 000000461 INF: MeasureProfile start 17-03-18 05:22:24.404 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:24.404 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:24.414 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:24.414 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:24.414 -07 000000461 INF: MeasureProfile done 17-03-18 05:22:24.414 -07 000000461 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:24.414 -07 000000461 INF: Autofocus finished 17-03-18 05:22:24.614 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:24.614 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:24.614 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137700845854599. ---------- 17-03-18 05:22:24.614 -07 000000610 INF: Cycle 136 Tile 8 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:24.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28603, sync = True, waitForSettling = True) 17-03-18 05:22:24.624 -07 000000610 INF: Z Motor: Moving to -0.130936 mm, started at -0.137701 mm, distance = 6.76 um 17-03-18 05:22:24.624 -07 000000610 INF: FPGA: Xmit ZDACW 28603\n [Z Motor] 17-03-18 05:22:24.624 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:22:24.634 -07 000000610 INF: FPGA: 'ZDACW 28603' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:24.634 -07 000000479 INF: FPGA: Recv ZDACR 28603 17-03-18 05:22:24.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:24.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29671 17-03-18 05:22:24.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.804 -07 000000501 INF: FPGA: Recv ZSGSRD 29677 17-03-18 05:22:24.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.814 -07 000000455 INF: FPGA: Recv ZSGSRD 29670 17-03-18 05:22:24.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.824 -07 000000480 INF: FPGA: Recv ZSGSRD 29667 17-03-18 05:22:24.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.834 -07 000000455 INF: FPGA: Recv ZSGSRD 29677 17-03-18 05:22:24.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.844 -07 000000480 INF: FPGA: Recv ZSGSRD 29680 17-03-18 05:22:24.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.854 -07 000000461 INF: FPGA: Recv ZSGSRD 29673 17-03-18 05:22:24.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29665 17-03-18 05:22:24.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.874 -07 000000569 INF: FPGA: Recv ZSGSRD 29678 17-03-18 05:22:24.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:24.884 -07 000000447 INF: FPGA: Recv ZSGSRD 29671 17-03-18 05:22:24.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:24.894 -07 000000480 INF: FPGA: Recv ZPIEZORD 25164 17-03-18 05:22:24.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:24.904 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.9 V. 17-03-18 05:22:24.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29673 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29672 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29665 (-130.1 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:22:24.904 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29673, posNoise = 7, negNoise = 8 17-03-18 05:22:24.904 -07 000000610 INF: Z Motor: After move to -0.130936, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:24.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 05:22:24.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:24.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:24.904 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:24.904 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:24.904 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:24.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:24.904 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:24.904 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:24.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:22:24.904 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:24.904 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:24.904 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:24.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:22:24.914 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:24.914 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:24.914 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:24.924 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:22:24.924 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:22:24.924 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms. 17-03-18 05:22:24.924 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 05:22:24.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28780 150\n [Camera] 17-03-18 05:22:25.124 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:25.564 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:25.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:25.564 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:25.564 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:25.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:25.564 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:25.574 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:25.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:22:25.574 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:25.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:22:25.754 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28780 822 17-03-18 05:22:25.904 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:25.944 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 367 ms. 17-03-18 05:22:25.944 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms. 17-03-18 05:22:25.944 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:25.944 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:25.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms. 17-03-18 05:22:25.944 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 05:22:25.944 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:25.954 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:25.954 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 05:22:25.954 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 05:22:26.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:26.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:26.114 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:26.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:26.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:26.124 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:26.124 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:26.124 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 05:22:26.124 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:26.134 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 05:22:26.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:26.304 -07 000000501 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:26.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28780 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:22:26.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:26.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130948998893608. ------ 17-03-18 05:22:26.314 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:26.314 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13735 mm 17-03-18 05:22:26.314 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:26.314 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-18 05:22:26.314 -07 000000608 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm 17-03-18 05:22:26.314 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30004, sync = True, waitForSettling = False) 17-03-18 05:22:26.314 -07 000000581 INF: Z Motor: Moving to -0.137350 mm, started at -0.130949 mm, distance = -6.40 um 17-03-18 05:22:26.314 -07 000000479 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:26.324 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:26.324 -07 000000581 INF: FPGA: Xmit ZDACW 30004\n [Z Motor] 17-03-18 05:22:26.324 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 05:22:26.334 -07 000000581 INF: FPGA: 'ZDACW 30004' command took 3 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 05:22:26.334 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:26.334 -07 000000474 INF: FPGA: Recv YRDPOS 134581 17-03-18 05:22:26.344 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:26.344 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-18 05:22:26.344 -07 000000608 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:26.344 -07 000000608 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:26.344 -07 000000608 INF: Y Motor: Moving 1343 steps-19 17-03-18 05:22:26.354 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:26.354 -07 000000474 INF: FPGA: Recv ZDACR 30004 17-03-18 05:22:26.364 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:26.364 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:26.364 -07 000000581 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet)) 17-03-18 05:22:26.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 05:22:26.514 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 05:22:26.514 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:26.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 05:22:26.514 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:22:26.544 -07 000000501 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:26.544 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall 17-03-18 05:22:26.654 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 519 ms. 17-03-18 05:22:26.654 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 525 ms. 17-03-18 05:22:26.654 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:26.654 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 05:22:26.664 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms. 17-03-18 05:22:26.734 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-18 05:22:26.734 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 367 ms to get response, and 397 ms overall 17-03-18 05:22:26.754 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:26.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:26.784 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:26.794 -07 000000569 INF: FPGA: Recv YRDPOS 136271 17-03-18 05:22:26.794 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 05:22:26.794 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:26.794 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-18 05:22:26.794 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec 17-03-18 05:22:27.654 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.997626, 17-03-18 05:22:27.744 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:27.744 -07 000000625 INF: FPGA: Recv YRDPOS 136271 17-03-18 05:22:27.754 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:27.754 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:27.784 -07 000000608 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:27.784 -07 000000608 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:27.784 -07 000000608 INF: Y Motor: Moved to 66.5386 after 1469 ms (table move) 17-03-18 05:22:27.784 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137350 mm (DAC = 30004) 17-03-18 05:22:27.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.794 -07 000000447 INF: FPGA: Recv ZSGSRD 30666 17-03-18 05:22:27.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:27.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.794 -07 000000479 INF: FPGA: Recv ZSGSRD 30680 17-03-18 05:22:27.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:22:27.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.804 -07 000000382 INF: FPGA: Recv ZSGSRD 30665 17-03-18 05:22:27.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.814 -07 000000502 INF: FPGA: Recv ZSGSRD 30666 17-03-18 05:22:27.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30671 17-03-18 05:22:27.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30664 17-03-18 05:22:27.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.844 -07 000000474 INF: FPGA: Recv ZSGSRD 30671 17-03-18 05:22:27.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.854 -07 000000625 INF: FPGA: Recv ZSGSRD 30664 17-03-18 05:22:27.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.864 -07 000000447 INF: FPGA: Recv ZSGSRD 30674 17-03-18 05:22:27.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:27.874 -07 000000479 INF: FPGA: Recv ZSGSRD 30676 17-03-18 05:22:27.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.884 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:27.884 -07 000000608 INF: FPGA: Recv ZPIEZORD 26456 17-03-18 05:22:27.894 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:27.894 -07 000000424 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.3 V. 17-03-18 05:22:27.894 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30670 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30668 (-136.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30664 (-136.5 uncal um), Max = 30680 (-136.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:22:27.894 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30670, posNoise = 10, negNoise = 6 17-03-18 05:22:27.894 -07 000000424 INF: Z Motor: After move to -0.137350, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:27.894 -07 000000424 INF: Z Motor: Settle wait time = 1472 ms, measure time = 103 ms (allowed 150 ms), total time = 1575 ms 17-03-18 05:22:27.894 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:27.944 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms 17-03-18 05:22:27.944 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:27.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:27.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:27.944 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:27.944 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:27.944 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:27.944 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:27.944 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:27.944 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:27.954 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:27.954 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:27.964 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 05:22:27.964 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 05:22:27.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:28.014 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:28.314 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:28.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:28.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:28.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:28.354 -07 000000608 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:28.354 -07 000000455 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:28.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-18 05:22:28.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:28.434 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:28.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:28.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:22:28.454 -07 000000461 INF: Autofocus start 17-03-18 05:22:28.454 -07 000000461 INF: MeasureProfile start 17-03-18 05:22:28.454 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:28.454 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:28.464 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:28.464 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:28.464 -07 000000461 INF: MeasureProfile done 17-03-18 05:22:28.464 -07 000000461 INF: X=-16 Z correction [um]=-0.08128808 17-03-18 05:22:28.464 -07 000000461 INF: Autofocus finished 17-03-18 05:22:28.664 -07 000000447 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:28.664 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall 17-03-18 05:22:28.664 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137353938398944. ---------- 17-03-18 05:22:28.664 -07 000000610 INF: Cycle 136 Tile 9 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:28.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28499, sync = True, waitForSettling = True) 17-03-18 05:22:28.674 -07 000000610 INF: Z Motor: Moving to -0.130460 mm, started at -0.137354 mm, distance = 6.89 um 17-03-18 05:22:28.674 -07 000000610 INF: FPGA: Xmit ZDACW 28499\n [Z Motor] 17-03-18 05:22:28.674 -07 000000461 INF: FPGA: Recv ZDACW 17-03-18 05:22:28.684 -07 000000610 INF: FPGA: 'ZDACW 28499' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:22:28.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:28.684 -07 000000606 INF: FPGA: Recv ZDACR 28499 17-03-18 05:22:28.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:28.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.844 -07 000000474 INF: FPGA: Recv ZSGSRD 29596 17-03-18 05:22:28.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:28.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.854 -07 000000479 INF: FPGA: Recv ZSGSRD 29598 17-03-18 05:22:28.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.864 -07 000000608 INF: FPGA: Recv ZSGSRD 29593 17-03-18 05:22:28.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.874 -07 000000581 INF: FPGA: Recv ZSGSRD 29596 17-03-18 05:22:28.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29602 17-03-18 05:22:28.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29596 17-03-18 05:22:28.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29598 17-03-18 05:22:28.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29599 17-03-18 05:22:28.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.924 -07 000000581 INF: FPGA: Recv ZSGSRD 29600 17-03-18 05:22:28.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:28.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29594 17-03-18 05:22:28.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:28.944 -07 000000569 INF: FPGA: Recv ZPIEZORD 25077 17-03-18 05:22:28.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:28.954 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.9 V. 17-03-18 05:22:28.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29597 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29597 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29593 (-129.7 uncal um), Max = 29602 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:22:28.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29597, posNoise = 5, negNoise = 4 17-03-18 05:22:28.954 -07 000000610 INF: Z Motor: After move to -0.130460, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:28.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:22:28.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:28.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:28.954 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:28.954 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:28.954 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:28.954 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:28.954 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:28.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:28.954 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:22:28.954 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:28.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:28.954 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:28.954 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:28.954 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:28.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:28.964 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:28.964 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:22:28.964 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:22:28.974 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:22:28.974 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:22:28.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28676 150\n [Camera] 17-03-18 05:22:29.174 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:29.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:29.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:29.614 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:29.614 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:29.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:29.614 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:29.614 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:29.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:22:29.624 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:29.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:22:29.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28676 822 17-03-18 05:22:29.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:29.994 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 05:22:29.994 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 05:22:29.994 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:29.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms. 17-03-18 05:22:29.994 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms. 17-03-18 05:22:29.994 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:29.994 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:29.994 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:29.994 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 05:22:30.004 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 05:22:30.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:30.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:30.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:30.164 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:30.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start. 17-03-18 05:22:30.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:30.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:30.164 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:30.164 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:30.164 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start. 17-03-18 05:22:30.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:30.354 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:30.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28676 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:22:30.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:30.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130460758770834. ------ 17-03-18 05:22:30.364 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13720 mm 17-03-18 05:22:30.364 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:30.364 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:30.364 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-18 05:22:30.364 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm 17-03-18 05:22:30.364 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29972, sync = True, waitForSettling = False) 17-03-18 05:22:30.364 -07 000000625 INF: Z Motor: Moving to -0.137203 mm, started at -0.130461 mm, distance = -6.74 um 17-03-18 05:22:30.364 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:30.374 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:30.374 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:30.374 -07 000000569 INF: FPGA: Recv YRDPOS 136271 17-03-18 05:22:30.384 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 05:22:30.384 -07 000000606 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:30.384 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:30.384 -07 000000606 INF: Y Motor: Moving 1350 steps-29 17-03-18 05:22:30.384 -07 000000625 INF: FPGA: Xmit ZDACW 29972\n [Z Motor] 17-03-18 05:22:30.384 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 05:22:30.394 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:30.394 -07 000000625 INF: FPGA: 'ZDACW 29972' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 05:22:30.404 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:30.414 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:30.414 -07 000000618 INF: FPGA: Recv ZDACR 29972 17-03-18 05:22:30.424 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:30.424 -07 000000625 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-18 05:22:30.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 05:22:30.554 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:22:30.554 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:30.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 05:22:30.554 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 05:22:30.564 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:30.564 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:30.564 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:30.564 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 05:22:30.574 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 05:22:30.594 -07 000000512 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:30.594 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:22:30.774 -07 000000447 INF: FPGA: Recv YMVTILE 17-03-18 05:22:30.774 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:22:30.824 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:30.834 -07 000000501 INF: FPGA: Recv YRDPOS 137977 17-03-18 05:22:30.834 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:22:30.834 -07 000000606 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:30.834 -07 000000606 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm) 17-03-18 05:22:30.834 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec 17-03-18 05:22:31.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:31.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:31.784 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:31.784 -07 000000479 INF: FPGA: Recv YRDPOS 137977 17-03-18 05:22:31.794 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.794 -07 000000606 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:31.824 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:31.824 -07 000000606 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:31.824 -07 000000606 INF: Y Motor: Moved to 67.3716 after 1455 ms (table move) 17-03-18 05:22:31.824 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137203 mm (DAC = 29972) 17-03-18 05:22:31.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.824 -07 000000501 INF: FPGA: Recv ZSGSRD 30661 17-03-18 05:22:31.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:31.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.834 -07 000000479 INF: FPGA: Recv ZSGSRD 30651 17-03-18 05:22:31.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.844 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.844 -07 000000512 INF: FPGA: Recv ZSGSRD 30644 17-03-18 05:22:31.854 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.854 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.854 -07 000000382 INF: FPGA: Recv ZSGSRD 30639 17-03-18 05:22:31.864 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.864 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.864 -07 000000502 INF: FPGA: Recv ZSGSRD 30642 17-03-18 05:22:31.874 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.874 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.874 -07 000000474 INF: FPGA: Recv ZSGSRD 30646 17-03-18 05:22:31.884 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.884 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.884 -07 000000467 INF: FPGA: Recv ZSGSRD 30646 17-03-18 05:22:31.894 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.894 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.894 -07 000000480 INF: FPGA: Recv ZSGSRD 30647 17-03-18 05:22:31.904 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.904 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.904 -07 000000447 INF: FPGA: Recv ZSGSRD 30652 17-03-18 05:22:31.914 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.914 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:31.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30651 17-03-18 05:22:31.924 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:31.924 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:31.924 -07 000000581 INF: FPGA: Recv ZPIEZORD 26462 17-03-18 05:22:31.934 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:22:31.934 -07 000000579 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.2 V. 17-03-18 05:22:31.934 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30648 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30646 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30639 (-136.4 uncal um), Max = 30661 (-136.5 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 05:22:31.934 -07 000000579 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30648, posNoise = 13, negNoise = 9 17-03-18 05:22:31.934 -07 000000579 INF: Z Motor: After move to -0.137203, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:31.934 -07 000000579 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms 17-03-18 05:22:31.934 -07 000000579 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:31.984 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms 17-03-18 05:22:31.984 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:31.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:31.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:31.984 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:31.984 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:31.984 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:31.984 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:31.984 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:31.984 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:31.984 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:31.984 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:31.994 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:22:31.994 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:22:32.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:32.054 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:32.354 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:32.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:32.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:32.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) start. 17-03-18 05:22:32.394 -07 000000625 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:32.394 -07 000000455 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:32.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 394 ms overall 17-03-18 05:22:32.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) end. Duration was 113 ms. 17-03-18 05:22:32.474 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:32.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:32.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms. 17-03-18 05:22:32.494 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:32.494 -07 000000581 INF: Autofocus start 17-03-18 05:22:32.494 -07 000000581 INF: MeasureProfile start 17-03-18 05:22:32.494 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:32.504 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:22:32.504 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:32.504 -07 000000581 INF: MeasureProfile done 17-03-18 05:22:32.504 -07 000000581 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:32.504 -07 000000581 INF: Autofocus finished 17-03-18 05:22:32.704 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:32.704 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:32.704 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137212605731825. ---------- 17-03-18 05:22:32.704 -07 000000610 INF: Cycle 136 Tile 10 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:32.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28496, sync = True, waitForSettling = True) 17-03-18 05:22:32.714 -07 000000610 INF: Z Motor: Moving to -0.130446 mm, started at -0.137213 mm, distance = 6.77 um 17-03-18 05:22:32.714 -07 000000610 INF: FPGA: Xmit ZDACW 28496\n [Z Motor] 17-03-18 05:22:32.714 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:22:32.724 -07 000000610 INF: FPGA: 'ZDACW 28496' command took 2 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:32.724 -07 000000461 INF: FPGA: Recv ZDACR 28496 17-03-18 05:22:32.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:32.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.884 -07 000000512 INF: FPGA: Recv ZSGSRD 29601 17-03-18 05:22:32.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.894 -07 000000581 INF: FPGA: Recv ZSGSRD 29598 17-03-18 05:22:32.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.904 -07 000000606 INF: FPGA: Recv ZSGSRD 29597 17-03-18 05:22:32.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29596 17-03-18 05:22:32.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29594 17-03-18 05:22:32.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.934 -07 000000512 INF: FPGA: Recv ZSGSRD 29593 17-03-18 05:22:32.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29589 17-03-18 05:22:32.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29592 17-03-18 05:22:32.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.964 -07 000000501 INF: FPGA: Recv ZSGSRD 29599 17-03-18 05:22:32.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:32.974 -07 000000461 INF: FPGA: Recv ZSGSRD 29597 17-03-18 05:22:32.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:32.984 -07 000000447 INF: FPGA: Recv ZPIEZORD 25092 17-03-18 05:22:32.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:32.994 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.9 V. 17-03-18 05:22:32.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29596 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29596 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29589 (-129.6 uncal um), Max = 29601 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:22:32.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29596, posNoise = 5, negNoise = 7 17-03-18 05:22:32.994 -07 000000610 INF: Z Motor: After move to -0.130446, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:32.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 05:22:32.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:32.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:32.994 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:32.994 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:32.994 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:32.994 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:32.994 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:32.994 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:32.994 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:32.994 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:32.994 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:32.994 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:33.004 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:33.004 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:33.004 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:33.004 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:33.014 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.020806, 17-03-18 05:22:33.014 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-18 05:22:33.014 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 05:22:33.014 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-18 05:22:33.014 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 05:22:33.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28673 150\n [Camera] 17-03-18 05:22:33.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:33.664 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:33.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:33.664 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:33.664 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:33.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start. 17-03-18 05:22:33.674 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:33.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:33.674 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:33.674 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:33.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start. 17-03-18 05:22:33.854 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28673 822 17-03-18 05:22:34.004 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:34.064 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 05:22:34.064 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:22:34.064 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:34.064 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 392 ms. 17-03-18 05:22:34.064 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 05:22:34.064 -07 000000479 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:34.064 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:34.064 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 05:22:34.064 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:34.074 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-18 05:22:34.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1185 17-03-18 05:22:34.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1185 17-03-18 05:22:34.224 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:34.224 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:34.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start. 17-03-18 05:22:34.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1185 17-03-18 05:22:34.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1185 17-03-18 05:22:34.224 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:34.224 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:34.224 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:22:34.414 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:34.414 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:34.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28673 150' command took 2 ms to send, 1372 ms to get response, and 1395 ms overall 17-03-18 05:22:34.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:34.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130454334558692. ------ 17-03-18 05:22:34.414 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:34.414 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13692 mm 17-03-18 05:22:34.414 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:34.424 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-18 05:22:34.424 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm 17-03-18 05:22:34.424 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:34.424 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29910, sync = True, waitForSettling = False) 17-03-18 05:22:34.424 -07 000000625 INF: Z Motor: Moving to -0.136919 mm, started at -0.130454 mm, distance = -6.46 um 17-03-18 05:22:34.424 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:34.424 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall 17-03-18 05:22:34.544 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:34.544 -07 000000447 INF: FPGA: Recv YRDPOS 137977 17-03-18 05:22:34.544 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall 17-03-18 05:22:34.544 -07 000000618 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:34.544 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:34.544 -07 000000618 INF: Y Motor: Moving 1346 steps-23 17-03-18 05:22:34.554 -07 000000625 INF: FPGA: Xmit ZDACW 29910\n [Z Motor] 17-03-18 05:22:34.554 -07 000000479 INF: FPGA: Recv ZDACW 17-03-18 05:22:34.564 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:34.564 -07 000000625 INF: FPGA: 'ZDACW 29910' command took 0 ms to send, 0 ms to get response, and 139 ms overall 17-03-18 05:22:34.574 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:34.574 -07 000000480 INF: FPGA: Recv ZDACR 29910 17-03-18 05:22:34.584 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:34.584 -07 000000625 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet)) 17-03-18 05:22:34.624 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 405 ms. 17-03-18 05:22:34.624 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 05:22:34.624 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:34.634 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 05:22:34.634 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:22:34.634 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:34.634 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:34.634 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:34.634 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-18 05:22:34.644 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 05:22:34.744 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:34.744 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 325 ms overall 17-03-18 05:22:34.934 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 05:22:34.934 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-18 05:22:34.984 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:34.994 -07 000000606 INF: FPGA: Recv YRDPOS 139683 17-03-18 05:22:34.994 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 3 ms overall 17-03-18 05:22:34.994 -07 000000618 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:34.994 -07 000000618 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-18 05:22:34.994 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.140 mm/sec 17-03-18 05:22:35.944 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:35.944 -07 000000479 INF: FPGA: Recv YRDPOS 139683 17-03-18 05:22:35.954 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:35.954 -07 000000618 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:35.994 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:35.994 -07 000000618 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:35.994 -07 000000618 INF: Y Motor: Moved to 68.2046 after 1577 ms (table move) 17-03-18 05:22:36.004 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136919 mm (DAC = 29910) 17-03-18 05:22:36.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.004 -07 000000461 INF: FPGA: Recv ZSGSRD 30607 17-03-18 05:22:36.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:36.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.014 -07 000000501 INF: FPGA: Recv ZSGSRD 30595 17-03-18 05:22:36.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.024 -07 000000581 INF: FPGA: Recv ZSGSRD 30601 17-03-18 05:22:36.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.034 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30604 17-03-18 05:22:36.044 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.044 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.044 -07 000000455 INF: FPGA: Recv ZSGSRD 30602 17-03-18 05:22:36.054 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.054 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.054 -07 000000626 INF: FPGA: Recv ZSGSRD 30602 17-03-18 05:22:36.064 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.064 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.064 -07 000000569 INF: FPGA: Recv ZSGSRD 30606 17-03-18 05:22:36.074 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.074 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.074 -07 000000608 INF: FPGA: Recv ZSGSRD 30604 17-03-18 05:22:36.084 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.084 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.084 -07 000000579 INF: FPGA: Recv ZSGSRD 30607 17-03-18 05:22:36.094 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.094 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:36.094 -07 000000455 INF: FPGA: Recv ZSGSRD 30597 17-03-18 05:22:36.104 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.104 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:36.104 -07 000000626 INF: FPGA: Recv ZPIEZORD 26407 17-03-18 05:22:36.114 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.114 -07 000000502 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.2 V. 17-03-18 05:22:36.114 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30602 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30603 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30595 (-136.1 uncal um), Max = 30607 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:22:36.114 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30602, posNoise = 5, negNoise = 7 17-03-18 05:22:36.114 -07 000000502 INF: Z Motor: After move to -0.136919, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:36.114 -07 000000502 INF: Z Motor: Settle wait time = 1581 ms, measure time = 108 ms (allowed 150 ms), total time = 1689 ms 17-03-18 05:22:36.114 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:36.164 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms 17-03-18 05:22:36.164 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:36.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:36.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:36.164 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:36.164 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:36.164 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:36.164 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:36.164 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:36.164 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:36.174 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:36.174 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:36.174 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:22:36.174 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 05:22:36.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:36.224 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:36.524 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:36.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:36.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:36.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:36.564 -07 000000455 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:36.564 -07 000000606 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:36.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-18 05:22:36.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:22:36.644 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:36.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:36.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:22:36.664 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:36.664 -07 000000474 INF: Autofocus start 17-03-18 05:22:36.664 -07 000000474 INF: MeasureProfile start 17-03-18 05:22:36.664 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:36.674 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:22:36.674 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:36.674 -07 000000474 INF: MeasureProfile done 17-03-18 05:22:36.674 -07 000000474 INF: X=-7 Z correction [um]=-0.03747771 17-03-18 05:22:36.674 -07 000000474 INF: Autofocus finished 17-03-18 05:22:36.754 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:36.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:36.874 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:36.874 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:36.874 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136917091973304. ---------- 17-03-18 05:22:36.874 -07 000000610 INF: Cycle 136 Tile 11 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:36.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28414, sync = True, waitForSettling = True) 17-03-18 05:22:36.884 -07 000000610 INF: Z Motor: Moving to -0.130071 mm, started at -0.136917 mm, distance = 6.85 um 17-03-18 05:22:36.884 -07 000000610 INF: FPGA: Xmit ZDACW 28414\n [Z Motor] 17-03-18 05:22:36.884 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:22:36.894 -07 000000610 INF: FPGA: 'ZDACW 28414' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:36.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:36.894 -07 000000581 INF: FPGA: Recv ZDACR 28414 17-03-18 05:22:36.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:36.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:37.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.054 -07 000000447 INF: FPGA: Recv ZSGSRD 29536 17-03-18 05:22:37.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:37.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29539 17-03-18 05:22:37.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29535 17-03-18 05:22:37.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.084 -07 000000461 INF: FPGA: Recv ZSGSRD 29538 17-03-18 05:22:37.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.094 -07 000000382 INF: FPGA: Recv ZSGSRD 29538 17-03-18 05:22:37.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.104 -07 000000608 INF: FPGA: Recv ZSGSRD 29540 17-03-18 05:22:37.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29537 17-03-18 05:22:37.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.124 -07 000000424 INF: FPGA: Recv ZSGSRD 29541 17-03-18 05:22:37.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.134 -07 000000474 INF: FPGA: Recv ZSGSRD 29537 17-03-18 05:22:37.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:37.144 -07 000000626 INF: FPGA: Recv ZSGSRD 29540 17-03-18 05:22:37.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:37.154 -07 000000447 INF: FPGA: Recv ZPIEZORD 25007 17-03-18 05:22:37.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:37.164 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.9 V. 17-03-18 05:22:37.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29538 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29535 (-129.3 uncal um), Max = 29541 (-129.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 05:22:37.164 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29538, posNoise = 3, negNoise = 3 17-03-18 05:22:37.164 -07 000000610 INF: Z Motor: After move to -0.130071, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:37.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-18 05:22:37.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:37.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:37.164 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:37.164 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:37.164 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:37.164 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:37.164 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:37.164 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:37.164 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:37.164 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:37.164 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:37.164 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:37.174 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:37.174 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:37.174 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:37.174 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:37.184 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:22:37.184 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms. 17-03-18 05:22:37.184 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:22:37.184 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:22:37.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28591 150\n [Camera] 17-03-18 05:22:37.384 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:37.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632 17-03-18 05:22:37.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632 17-03-18 05:22:37.824 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:37.824 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632 17-03-18 05:22:37.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632 17-03-18 05:22:37.824 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:37.824 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:37.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:22:37.834 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:37.834 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start. 17-03-18 05:22:38.014 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28591 822 17-03-18 05:22:38.164 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:38.224 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 05:22:38.224 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:22:38.224 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:38.224 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:38.224 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 05:22:38.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 05:22:38.234 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 05:22:38.234 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:38.234 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:38.244 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 05:22:38.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:38.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:38.374 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:38.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:38.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:38.374 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:38.384 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.008536, 17-03-18 05:22:38.384 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:38.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:22:38.384 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:38.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:22:38.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:22:38.564 -07 000000455 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:38.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28591 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:22:38.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:38.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.13008173025447. ------ 17-03-18 05:22:38.694 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:38.694 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13666 mm 17-03-18 05:22:38.694 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:38.694 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-18 05:22:38.694 -07 000000512 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm 17-03-18 05:22:38.694 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29853, sync = True, waitForSettling = False) 17-03-18 05:22:38.694 -07 000000606 INF: Z Motor: Moving to -0.136658 mm, started at -0.130082 mm, distance = -6.58 um 17-03-18 05:22:38.694 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:38.704 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:22:38.704 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:38.704 -07 000000618 INF: FPGA: Recv YRDPOS 139684 17-03-18 05:22:38.714 -07 000000606 INF: FPGA: Xmit ZDACW 29853\n [Z Motor] 17-03-18 05:22:38.714 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 05:22:38.714 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:38.714 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:22:38.714 -07 000000512 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:38.714 -07 000000512 INF: Y Motor: Moving 1340 steps-16 17-03-18 05:22:38.724 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:38.724 -07 000000606 INF: FPGA: 'ZDACW 29853' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 05:22:38.734 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:38.744 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:38.744 -07 000000501 INF: FPGA: Recv ZDACR 29853 17-03-18 05:22:38.754 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:38.754 -07 000000606 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-18 05:22:38.774 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 05:22:38.774 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 05:22:38.774 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:38.784 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 05:22:38.784 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 05:22:38.784 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:38.784 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:38.784 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:38.784 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-18 05:22:38.794 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 05:22:38.924 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:38.924 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 05:22:39.104 -07 000000467 INF: FPGA: Recv YMVTILE 17-03-18 05:22:39.104 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 05:22:39.154 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:39.164 -07 000000479 INF: FPGA: Recv YRDPOS 141366 17-03-18 05:22:39.164 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:39.164 -07 000000512 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:39.164 -07 000000512 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-18 05:22:39.164 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec 17-03-18 05:22:40.114 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:40.114 -07 000000474 INF: FPGA: Recv YRDPOS 141366 17-03-18 05:22:40.124 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.124 -07 000000512 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:40.154 -07 000000512 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:40.154 -07 000000512 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:40.154 -07 000000512 INF: Y Motor: Moved to 69.0264 after 1454 ms (table move) 17-03-18 05:22:40.154 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136658 mm (DAC = 29853) 17-03-18 05:22:40.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.154 -07 000000501 INF: FPGA: Recv ZSGSRD 30567 17-03-18 05:22:40.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:40.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.164 -07 000000424 INF: FPGA: Recv ZSGSRD 30561 17-03-18 05:22:40.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.174 -07 000000502 INF: FPGA: Recv ZSGSRD 30560 17-03-18 05:22:40.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.184 -07 000000606 INF: FPGA: Recv ZSGSRD 30562 17-03-18 05:22:40.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.194 -07 000000569 INF: FPGA: Recv ZSGSRD 30559 17-03-18 05:22:40.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30556 17-03-18 05:22:40.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.214 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.214 -07 000000512 INF: FPGA: Recv ZSGSRD 30557 17-03-18 05:22:40.224 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:40.224 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.224 -07 000000618 INF: FPGA: Recv ZSGSRD 30563 17-03-18 05:22:40.234 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.234 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.234 -07 000000579 INF: FPGA: Recv ZSGSRD 30569 17-03-18 05:22:40.244 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.244 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:40.244 -07 000000461 INF: FPGA: Recv ZSGSRD 30561 17-03-18 05:22:40.254 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.254 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:40.254 -07 000000479 INF: FPGA: Recv ZPIEZORD 26401 17-03-18 05:22:40.264 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:40.264 -07 000000625 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.555 V. Piezo Error = -9.2 V. 17-03-18 05:22:40.264 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30562 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30561 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30556 (-135.8 uncal um), Max = 30569 (-135.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:22:40.264 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30562, posNoise = 7, negNoise = 6 17-03-18 05:22:40.264 -07 000000625 INF: Z Motor: After move to -0.136658, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:40.264 -07 000000625 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms 17-03-18 05:22:40.264 -07 000000625 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:40.314 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms 17-03-18 05:22:40.314 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:40.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:40.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:40.314 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:40.314 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:40.314 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:40.314 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:40.314 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:40.314 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:40.324 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:40.324 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:40.324 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:22:40.324 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:22:40.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:40.374 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:40.674 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:40.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:40.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:40.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:40.714 -07 000000608 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:40.714 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:40.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-18 05:22:40.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:40.794 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:40.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:40.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:22:40.814 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:40.814 -07 000000606 INF: Autofocus start 17-03-18 05:22:40.814 -07 000000606 INF: MeasureProfile start 17-03-18 05:22:40.814 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:40.824 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:40.824 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:40.824 -07 000000606 INF: MeasureProfile done 17-03-18 05:22:40.824 -07 000000606 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:40.824 -07 000000606 INF: Autofocus finished 17-03-18 05:22:41.024 -07 000000447 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:41.024 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:41.024 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136660123487633. ---------- 17-03-18 05:22:41.024 -07 000000610 INF: Cycle 136 Tile 12 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:41.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28377, sync = True, waitForSettling = True) 17-03-18 05:22:41.034 -07 000000610 INF: Z Motor: Moving to -0.129902 mm, started at -0.136660 mm, distance = 6.76 um 17-03-18 05:22:41.034 -07 000000610 INF: FPGA: Xmit ZDACW 28377\n [Z Motor] 17-03-18 05:22:41.034 -07 000000501 INF: FPGA: Recv ZDACW 17-03-18 05:22:41.044 -07 000000610 INF: FPGA: 'ZDACW 28377' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:41.044 -07 000000461 INF: FPGA: Recv ZDACR 28377 17-03-18 05:22:41.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:41.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.204 -07 000000447 INF: FPGA: Recv ZSGSRD 29512 17-03-18 05:22:41.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.214 -07 000000467 INF: FPGA: Recv ZSGSRD 29525 17-03-18 05:22:41.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.224 -07 000000579 INF: FPGA: Recv ZSGSRD 29510 17-03-18 05:22:41.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.234 -07 000000512 INF: FPGA: Recv ZSGSRD 29507 17-03-18 05:22:41.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.244 -07 000000625 INF: FPGA: Recv ZSGSRD 29511 17-03-18 05:22:41.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.254 -07 000000382 INF: FPGA: Recv ZSGSRD 29512 17-03-18 05:22:41.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.264 -07 000000474 INF: FPGA: Recv ZSGSRD 29512 17-03-18 05:22:41.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.274 -07 000000626 INF: FPGA: Recv ZSGSRD 29506 17-03-18 05:22:41.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.284 -07 000000512 INF: FPGA: Recv ZSGSRD 29509 17-03-18 05:22:41.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:41.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29510 17-03-18 05:22:41.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:41.304 -07 000000581 INF: FPGA: Recv ZPIEZORD 24988 17-03-18 05:22:41.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:41.314 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.9 V. 17-03-18 05:22:41.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29511 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29510 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29506 (-129.1 uncal um), Max = 29525 (-129.2 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:22:41.314 -07 000000610 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29511, posNoise = 14, negNoise = 5 17-03-18 05:22:41.314 -07 000000610 INF: Z Motor: After move to -0.129902, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:41.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 05:22:41.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:41.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:41.314 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:41.314 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:41.314 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:41.314 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:41.314 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:41.314 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:41.324 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms. 17-03-18 05:22:41.324 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:41.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms. 17-03-18 05:22:41.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:41.324 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:22:41.324 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:41.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:41.324 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:41.334 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:22:41.334 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:22:41.334 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 05:22:41.334 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 05:22:41.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28554 150\n [Camera] 17-03-18 05:22:41.534 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:41.754 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:41.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:41.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:41.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:41.974 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:41.974 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:41.974 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start. 17-03-18 05:22:41.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:41.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:41.974 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:41.974 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:41.974 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start. 17-03-18 05:22:42.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28554 822 17-03-18 05:22:42.314 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:42.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 05:22:42.374 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 05:22:42.374 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:42.374 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 05:22:42.374 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 05:22:42.374 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:42.374 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:42.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:22:42.374 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:42.384 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-18 05:22:42.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:42.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:42.524 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:42.524 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:42.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-18 05:22:42.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:42.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:42.534 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:42.534 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:42.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-18 05:22:42.714 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:22:42.724 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:42.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28554 150' command took 2 ms to send, 1372 ms to get response, and 1384 ms overall 17-03-18 05:22:42.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:42.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129908276526643. ------ 17-03-18 05:22:42.724 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13638 mm 17-03-18 05:22:42.724 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:42.734 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:42.734 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29792, sync = True, waitForSettling = False) 17-03-18 05:22:42.734 -07 000000579 INF: Z Motor: Moving to -0.136379 mm, started at -0.129908 mm, distance = -6.47 um 17-03-18 05:22:42.734 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-18 05:22:42.734 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm 17-03-18 05:22:42.734 -07 000000479 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:42.744 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 05:22:42.744 -07 000000579 INF: FPGA: Xmit ZDACW 29792\n [Z Motor] 17-03-18 05:22:42.744 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:22:42.754 -07 000000579 INF: FPGA: 'ZDACW 29792' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 05:22:42.754 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:42.754 -07 000000569 INF: FPGA: Recv YRDPOS 141367 17-03-18 05:22:42.764 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-18 05:22:42.764 -07 000000461 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:42.764 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:42.764 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:42.764 -07 000000461 INF: Y Motor: Moving 1353 steps-33 17-03-18 05:22:42.774 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:42.774 -07 000000467 INF: FPGA: Recv ZDACR 29792 17-03-18 05:22:42.784 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:42.784 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:42.784 -07 000000579 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 05:22:42.924 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 05:22:42.924 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:22:42.924 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:42.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 05:22:42.934 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 05:22:42.934 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:42.934 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:42.934 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:42.934 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-18 05:22:42.944 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 05:22:42.964 -07 000000455 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:42.964 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-18 05:22:43.154 -07 000000579 INF: FPGA: Recv YMVTILE 17-03-18 05:22:43.154 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-18 05:22:43.214 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:43.214 -07 000000501 INF: FPGA: Recv YRDPOS 143079 17-03-18 05:22:43.224 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:43.224 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:43.224 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 05:22:43.224 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec 17-03-18 05:22:43.744 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 4.011254, 17-03-18 05:22:44.174 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:44.174 -07 000000618 INF: FPGA: Recv YRDPOS 143079 17-03-18 05:22:44.184 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:44.184 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:44.214 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:44.214 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:44.214 -07 000000461 INF: Y Motor: Moved to 69.8628 after 1479 ms (table move) 17-03-18 05:22:44.214 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136379 mm (DAC = 29792) 17-03-18 05:22:44.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.214 -07 000000512 INF: FPGA: Recv ZSGSRD 30521 17-03-18 05:22:44.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:22:44.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.224 -07 000000625 INF: FPGA: Recv ZSGSRD 30526 17-03-18 05:22:44.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.234 -07 000000480 INF: FPGA: Recv ZSGSRD 30516 17-03-18 05:22:44.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.244 -07 000000569 INF: FPGA: Recv ZSGSRD 30513 17-03-18 05:22:44.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.254 -07 000000474 INF: FPGA: Recv ZSGSRD 30513 17-03-18 05:22:44.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.264 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.264 -07 000000382 INF: FPGA: Recv ZSGSRD 30519 17-03-18 05:22:44.274 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.274 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.274 -07 000000625 INF: FPGA: Recv ZSGSRD 30525 17-03-18 05:22:44.284 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.284 -07 000000480 INF: FPGA: Recv ZSGSRD 30523 17-03-18 05:22:44.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.294 -07 000000606 INF: FPGA: Recv ZSGSRD 30518 17-03-18 05:22:44.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:44.304 -07 000000618 INF: FPGA: Recv ZSGSRD 30521 17-03-18 05:22:44.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.314 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:44.314 -07 000000608 INF: FPGA: Recv ZPIEZORD 26327 17-03-18 05:22:44.324 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:44.324 -07 000000626 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.2 V. 17-03-18 05:22:44.324 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30520 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30513 (-135.6 uncal um), Max = 30526 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 05:22:44.324 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 6, negNoise = 7 17-03-18 05:22:44.324 -07 000000626 INF: Z Motor: After move to -0.136379, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:44.324 -07 000000626 INF: Z Motor: Settle wait time = 1483 ms, measure time = 106 ms (allowed 150 ms), total time = 1589 ms 17-03-18 05:22:44.324 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:44.374 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1642 ms 17-03-18 05:22:44.374 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:44.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:44.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:44.374 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:44.374 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:44.374 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:44.374 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:44.374 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:44.374 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:44.384 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:44.384 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:44.394 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 05:22:44.394 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 05:22:44.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:44.444 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:44.744 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:44.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:44.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:44.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) start. 17-03-18 05:22:44.784 -07 000000474 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:44.784 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:44.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-18 05:22:44.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:44.854 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:44.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:44.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:22:44.884 -07 000000480 INF: Autofocus start 17-03-18 05:22:44.884 -07 000000480 INF: MeasureProfile start 17-03-18 05:22:44.884 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:44.884 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:44.894 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:44.894 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:44.894 -07 000000480 INF: MeasureProfile done 17-03-18 05:22:44.894 -07 000000480 INF: X=-112 Z correction [um]=-0.5485987 17-03-18 05:22:44.894 -07 000000480 INF: Autofocus finished 17-03-18 05:22:45.094 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:45.094 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall 17-03-18 05:22:45.094 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136390306577679. ---------- 17-03-18 05:22:45.094 -07 000000610 INF: Cycle 136 Tile 13 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:45.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28185, sync = True, waitForSettling = True) 17-03-18 05:22:45.104 -07 000000610 INF: Z Motor: Moving to -0.129023 mm, started at -0.136390 mm, distance = 7.37 um 17-03-18 05:22:45.104 -07 000000610 INF: FPGA: Xmit ZDACW 28185\n [Z Motor] 17-03-18 05:22:45.104 -07 000000461 INF: FPGA: Recv ZDACW 17-03-18 05:22:45.114 -07 000000610 INF: FPGA: 'ZDACW 28185' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:45.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:45.114 -07 000000606 INF: FPGA: Recv ZDACR 28185 17-03-18 05:22:45.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:45.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.274 -07 000000447 INF: FPGA: Recv ZSGSRD 29372 17-03-18 05:22:45.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.284 -07 000000618 INF: FPGA: Recv ZSGSRD 29377 17-03-18 05:22:45.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29369 17-03-18 05:22:45.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.304 -07 000000626 INF: FPGA: Recv ZSGSRD 29375 17-03-18 05:22:45.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.314 -07 000000502 INF: FPGA: Recv ZSGSRD 29375 17-03-18 05:22:45.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.324 -07 000000447 INF: FPGA: Recv ZSGSRD 29370 17-03-18 05:22:45.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29376 17-03-18 05:22:45.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:22:45.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.344 -07 000000569 INF: FPGA: Recv ZSGSRD 29367 17-03-18 05:22:45.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.354 -07 000000625 INF: FPGA: Recv ZSGSRD 29371 17-03-18 05:22:45.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:45.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29376 17-03-18 05:22:45.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:45.374 -07 000000512 INF: FPGA: Recv ZPIEZORD 24823 17-03-18 05:22:45.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:45.384 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -10.0 V. 17-03-18 05:22:45.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29373 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29374 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29367 (-128.2 uncal um), Max = 29377 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:22:45.384 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29373, posNoise = 4, negNoise = 6 17-03-18 05:22:45.384 -07 000000610 INF: Z Motor: After move to -0.129023, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:45.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:22:45.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:45.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:45.384 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:45.384 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:45.384 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:45.384 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:45.384 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:45.384 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:45.384 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:45.384 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:45.384 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 05:22:45.384 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:45.394 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:22:45.394 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:45.394 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:45.394 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:45.404 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:22:45.404 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:22:45.404 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms. 17-03-18 05:22:45.404 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 05:22:45.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28362 150\n [Camera] 17-03-18 05:22:45.604 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:46.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:46.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:46.044 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:46.044 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:46.044 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:22:46.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:46.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:46.044 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:46.044 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:46.044 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:22:46.234 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28362 822 17-03-18 05:22:46.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:46.414 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms. 17-03-18 05:22:46.414 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 05:22:46.414 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:46.424 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms. 17-03-18 05:22:46.424 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms. 17-03-18 05:22:46.424 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:46.424 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:46.424 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:46.424 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 05:22:46.424 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-18 05:22:46.594 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1185 17-03-18 05:22:46.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1185 17-03-18 05:22:46.594 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:46.594 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:46.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 05:22:46.604 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1185 17-03-18 05:22:46.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1185 17-03-18 05:22:46.604 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:46.604 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:46.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:22:46.754 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:46.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:46.784 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:46.784 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:46.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28362 150' command took 2 ms to send, 1377 ms to get response, and 1382 ms overall 17-03-18 05:22:46.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:46.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.12902173525108. ------ 17-03-18 05:22:46.914 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:46.914 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13540 mm 17-03-18 05:22:46.914 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:46.914 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-18 05:22:46.914 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm 17-03-18 05:22:46.914 -07 000000625 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:46.914 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29578, sync = True, waitForSettling = False) 17-03-18 05:22:46.914 -07 000000479 INF: Z Motor: Moving to -0.135399 mm, started at -0.129022 mm, distance = -6.38 um 17-03-18 05:22:46.924 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:46.924 -07 000000479 INF: FPGA: Xmit ZDACW 29578\n [Z Motor] 17-03-18 05:22:46.924 -07 000000502 INF: FPGA: Recv ZDACW 17-03-18 05:22:46.934 -07 000000479 INF: FPGA: 'ZDACW 29578' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:46.934 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:46.944 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:46.944 -07 000000502 INF: FPGA: Recv YRDPOS 143079 17-03-18 05:22:46.954 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:46.954 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall 17-03-18 05:22:46.954 -07 000000512 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:46.954 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:46.954 -07 000000512 INF: Y Motor: Moving 1344 steps-20 17-03-18 05:22:46.954 -07 000000606 INF: FPGA: Recv ZDACR 29578 17-03-18 05:22:46.964 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:46.964 -07 000000479 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-18 05:22:46.964 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:47.004 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 05:22:47.004 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 05:22:47.004 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:47.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 05:22:47.004 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 05:22:47.004 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:47.004 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:47.004 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:47.004 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 05:22:47.014 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 05:22:47.134 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:47.134 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 05:22:47.334 -07 000000424 INF: FPGA: Recv YMVTILE 17-03-18 05:22:47.334 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 05:22:47.384 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:47.394 -07 000000382 INF: FPGA: Recv YRDPOS 144768 17-03-18 05:22:47.394 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:47.394 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:47.394 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 05:22:47.394 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec 17-03-18 05:22:48.344 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:48.344 -07 000000502 INF: FPGA: Recv YRDPOS 144769 17-03-18 05:22:48.354 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:48.354 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:48.384 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:48.384 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 05:22:48.384 -07 000000512 INF: Y Motor: Moved to 70.6880 after 1463 ms (table move) 17-03-18 05:22:48.384 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135399 mm (DAC = 29578) 17-03-18 05:22:48.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.384 -07 000000579 INF: FPGA: Recv ZSGSRD 30374 17-03-18 05:22:48.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:48.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.404 -07 000000606 INF: FPGA: Recv ZSGSRD 30363 17-03-18 05:22:48.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:48.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.434 -07 000000606 INF: FPGA: Recv ZSGSRD 30369 17-03-18 05:22:48.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:48.444 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.444 -07 000000467 INF: FPGA: Recv ZSGSRD 30364 17-03-18 05:22:48.454 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:48.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.464 -07 000000455 INF: FPGA: Recv ZSGSRD 30369 17-03-18 05:22:48.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:48.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.474 -07 000000502 INF: FPGA: Recv ZSGSRD 30369 17-03-18 05:22:48.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:48.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.494 -07 000000569 INF: FPGA: Recv ZSGSRD 30363 17-03-18 05:22:48.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:48.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.504 -07 000000502 INF: FPGA: Recv ZSGSRD 30370 17-03-18 05:22:48.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:48.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.514 -07 000000424 INF: FPGA: Recv ZSGSRD 30367 17-03-18 05:22:48.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:48.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:48.524 -07 000000455 INF: FPGA: Recv ZSGSRD 30368 17-03-18 05:22:48.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:48.534 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:48.534 -07 000000474 INF: FPGA: Recv ZPIEZORD 26173 17-03-18 05:22:48.544 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:48.544 -07 000000501 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.2 V. 17-03-18 05:22:48.544 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30368 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30368 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30363 (-134.6 uncal um), Max = 30374 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:22:48.544 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30368, posNoise = 6, negNoise = 5 17-03-18 05:22:48.544 -07 000000501 INF: Z Motor: After move to -0.135399, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:48.544 -07 000000501 INF: Z Motor: Settle wait time = 1465 ms, measure time = 156 ms (allowed 150 ms), total time = 1621 ms 17-03-18 05:22:48.544 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms 17-03-18 05:22:48.544 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-18 05:22:48.544 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:48.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:48.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:48.544 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:48.544 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:48.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:48.544 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:48.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:48.544 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:48.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:48.554 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:48.554 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:22:48.554 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 05:22:48.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:48.604 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:48.904 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:48.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:48.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:48.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:48.944 -07 000000461 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:48.944 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:48.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 05:22:49.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:22:49.024 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:49.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:49.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:22:49.044 -07 000000424 INF: Autofocus start 17-03-18 05:22:49.044 -07 000000424 INF: MeasureProfile start 17-03-18 05:22:49.044 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:49.044 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:49.054 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:49.054 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:49.054 -07 000000424 INF: MeasureProfile done 17-03-18 05:22:49.054 -07 000000424 INF: X=0 Z correction [um]=-0.02394831 17-03-18 05:22:49.054 -07 000000424 INF: Autofocus finished 17-03-18 05:22:49.104 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.988112, 17-03-18 05:22:49.254 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:49.254 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:49.254 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135413826332132. ---------- 17-03-18 05:22:49.254 -07 000000610 INF: Cycle 136 Tile 14 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:49.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28086, sync = True, waitForSettling = True) 17-03-18 05:22:49.264 -07 000000610 INF: Z Motor: Moving to -0.128569 mm, started at -0.135414 mm, distance = 6.84 um 17-03-18 05:22:49.264 -07 000000610 INF: FPGA: Xmit ZDACW 28086\n [Z Motor] 17-03-18 05:22:49.264 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 05:22:49.274 -07 000000610 INF: FPGA: 'ZDACW 28086' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:49.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:49.274 -07 000000424 INF: FPGA: Recv ZDACR 28086 17-03-18 05:22:49.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:49.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.434 -07 000000626 INF: FPGA: Recv ZSGSRD 29301 17-03-18 05:22:49.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:49.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.444 -07 000000455 INF: FPGA: Recv ZSGSRD 29300 17-03-18 05:22:49.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.454 -07 000000606 INF: FPGA: Recv ZSGSRD 29301 17-03-18 05:22:49.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.464 -07 000000579 INF: FPGA: Recv ZSGSRD 29307 17-03-18 05:22:49.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.474 -07 000000479 INF: FPGA: Recv ZSGSRD 29304 17-03-18 05:22:49.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29304 17-03-18 05:22:49.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.494 -07 000000461 INF: FPGA: Recv ZSGSRD 29306 17-03-18 05:22:49.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.504 -07 000000512 INF: FPGA: Recv ZSGSRD 29306 17-03-18 05:22:49.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29295 17-03-18 05:22:49.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:49.524 -07 000000424 INF: FPGA: Recv ZSGSRD 29304 17-03-18 05:22:49.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:49.534 -07 000000626 INF: FPGA: Recv ZPIEZORD 24812 17-03-18 05:22:49.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:49.544 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.9 V. 17-03-18 05:22:49.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29303 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29295 (-127.7 uncal um), Max = 29307 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:22:49.544 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29303, posNoise = 4, negNoise = 8 17-03-18 05:22:49.544 -07 000000610 INF: Z Motor: After move to -0.128569, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:49.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:22:49.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:49.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:49.544 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:49.544 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:49.544 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:49.544 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:49.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:49.544 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:49.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:49.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:49.544 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:49.544 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:49.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:49.554 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:49.554 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:22:49.554 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:49.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:22:49.564 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:22:49.564 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:22:49.564 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:22:49.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28262 150\n [Camera] 17-03-18 05:22:49.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:50.204 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:50.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:50.204 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:50.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:50.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:50.214 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:50.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:22:50.214 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:50.214 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:50.214 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start. 17-03-18 05:22:50.394 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28262 822 17-03-18 05:22:50.544 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:50.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 05:22:50.604 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 05:22:50.604 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:50.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:50.604 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 05:22:50.614 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 05:22:50.614 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 05:22:50.614 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:50.614 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:50.624 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-18 05:22:50.754 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:50.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:50.754 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:50.754 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:50.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:50.754 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:50.764 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:50.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:22:50.764 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:50.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:22:50.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1374 17-03-18 05:22:50.944 -07 000000480 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:50.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28262 150' command took 2 ms to send, 1377 ms to get response, and 1382 ms overall 17-03-18 05:22:50.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:50.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128572040401156. ------ 17-03-18 05:22:50.954 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:50.954 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13542 mm 17-03-18 05:22:50.954 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:51.074 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:51.074 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall 17-03-18 05:22:51.074 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:51.074 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-18 05:22:51.074 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm 17-03-18 05:22:51.074 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29582, sync = True, waitForSettling = False) 17-03-18 05:22:51.074 -07 000000581 INF: Z Motor: Moving to -0.135418 mm, started at -0.128572 mm, distance = -6.85 um 17-03-18 05:22:51.084 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:51.084 -07 000000382 INF: FPGA: Recv YRDPOS 144769 17-03-18 05:22:51.094 -07 000000581 INF: FPGA: Xmit ZDACW 29582\n [Z Motor] 17-03-18 05:22:51.094 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:22:51.094 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:51.094 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:51.094 -07 000000608 INF: Y Motor: Moving 1351 steps-31 17-03-18 05:22:51.094 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 05:22:51.104 -07 000000581 INF: FPGA: 'ZDACW 29582' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-18 05:22:51.104 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:51.104 -07 000000447 INF: FPGA: Recv ZDACR 29582 17-03-18 05:22:51.114 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:51.114 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:51.114 -07 000000581 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-18 05:22:51.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 05:22:51.164 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 05:22:51.164 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:51.164 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 05:22:51.164 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 05:22:51.164 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:51.164 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:51.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-18 05:22:51.174 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:51.174 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms. 17-03-18 05:22:51.274 -07 000000447 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:51.274 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:51.484 -07 000000424 INF: FPGA: Recv YMVTILE 17-03-18 05:22:51.484 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:22:51.534 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:51.544 -07 000000581 INF: FPGA: Recv YRDPOS 146469 17-03-18 05:22:51.544 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:22:51.544 -07 000000608 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:51.544 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 05:22:51.544 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec 17-03-18 05:22:51.754 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:51.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:52.494 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:52.494 -07 000000606 INF: FPGA: Recv YRDPOS 146469 17-03-18 05:22:52.504 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:52.504 -07 000000608 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:52.534 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:52.534 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:52.534 -07 000000608 INF: Y Motor: Moved to 71.5181 after 1458 ms (table move) 17-03-18 05:22:52.534 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135418 mm (DAC = 29582) 17-03-18 05:22:52.534 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.534 -07 000000424 INF: FPGA: Recv ZSGSRD 30371 17-03-18 05:22:52.544 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:22:52.544 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30369 17-03-18 05:22:52.554 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.554 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.554 -07 000000512 INF: FPGA: Recv ZSGSRD 30376 17-03-18 05:22:52.564 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.564 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.564 -07 000000461 INF: FPGA: Recv ZSGSRD 30374 17-03-18 05:22:52.574 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.574 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.574 -07 000000467 INF: FPGA: Recv ZSGSRD 30366 17-03-18 05:22:52.584 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.584 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.584 -07 000000625 INF: FPGA: Recv ZSGSRD 30369 17-03-18 05:22:52.594 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.594 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.594 -07 000000382 INF: FPGA: Recv ZSGSRD 30365 17-03-18 05:22:52.604 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.604 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.604 -07 000000618 INF: FPGA: Recv ZSGSRD 30372 17-03-18 05:22:52.614 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.614 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.614 -07 000000626 INF: FPGA: Recv ZSGSRD 30368 17-03-18 05:22:52.624 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.624 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:52.624 -07 000000608 INF: FPGA: Recv ZSGSRD 30366 17-03-18 05:22:52.634 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.634 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:52.634 -07 000000512 INF: FPGA: Recv ZPIEZORD 26205 17-03-18 05:22:52.644 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:52.644 -07 000000479 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -9.2 V. 17-03-18 05:22:52.644 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30370 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30369 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30365 (-134.6 uncal um), Max = 30376 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:22:52.644 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30370, posNoise = 6, negNoise = 5 17-03-18 05:22:52.644 -07 000000479 INF: Z Motor: After move to -0.135418, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:52.644 -07 000000479 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms 17-03-18 05:22:52.644 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:52.694 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms 17-03-18 05:22:52.694 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:52.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:52.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:52.694 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:52.694 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:52.694 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:52.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:52.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:52.694 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:52.704 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:52.704 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:52.714 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 05:22:52.714 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 05:22:52.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:52.764 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:22:53.064 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:22:53.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:22:53.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:53.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:22:53.104 -07 000000501 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:53.104 -07 000000608 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:53.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall 17-03-18 05:22:53.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:22:53.184 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:53.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:53.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:22:53.204 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:53.204 -07 000000618 INF: Autofocus start 17-03-18 05:22:53.204 -07 000000618 INF: MeasureProfile start 17-03-18 05:22:53.204 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:53.214 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:22:53.214 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:53.214 -07 000000618 INF: MeasureProfile done 17-03-18 05:22:53.214 -07 000000618 INF: X=-16 Z correction [um]=-0.08128808 17-03-18 05:22:53.214 -07 000000618 INF: Autofocus finished 17-03-18 05:22:53.414 -07 000000447 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:53.414 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:53.414 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135426674756415. ---------- 17-03-18 05:22:53.414 -07 000000610 INF: Cycle 136 Tile 15 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:53.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28077, sync = True, waitForSettling = True) 17-03-18 05:22:53.424 -07 000000610 INF: Z Motor: Moving to -0.128528 mm, started at -0.135427 mm, distance = 6.90 um 17-03-18 05:22:53.424 -07 000000610 INF: FPGA: Xmit ZDACW 28077\n [Z Motor] 17-03-18 05:22:53.424 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 05:22:53.434 -07 000000610 INF: FPGA: 'ZDACW 28077' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:53.434 -07 000000447 INF: FPGA: Recv ZDACR 28077 17-03-18 05:22:53.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:53.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.594 -07 000000625 INF: FPGA: Recv ZSGSRD 29292 17-03-18 05:22:53.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:53.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.604 -07 000000606 INF: FPGA: Recv ZSGSRD 29302 17-03-18 05:22:53.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.614 -07 000000479 INF: FPGA: Recv ZSGSRD 29297 17-03-18 05:22:53.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.624 -07 000000512 INF: FPGA: Recv ZSGSRD 29294 17-03-18 05:22:53.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:22:53.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.634 -07 000000480 INF: FPGA: Recv ZSGSRD 29295 17-03-18 05:22:53.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.644 -07 000000626 INF: FPGA: Recv ZSGSRD 29298 17-03-18 05:22:53.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.654 -07 000000579 INF: FPGA: Recv ZSGSRD 29295 17-03-18 05:22:53.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.664 -07 000000461 INF: FPGA: Recv ZSGSRD 29299 17-03-18 05:22:53.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.674 -07 000000501 INF: FPGA: Recv ZSGSRD 29294 17-03-18 05:22:53.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:53.684 -07 000000606 INF: FPGA: Recv ZSGSRD 29295 17-03-18 05:22:53.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:53.694 -07 000000581 INF: FPGA: Recv ZPIEZORD 24793 17-03-18 05:22:53.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:53.704 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.9 V. 17-03-18 05:22:53.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29296 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29295 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29292 (-127.7 uncal um), Max = 29302 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 05:22:53.704 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29296, posNoise = 6, negNoise = 4 17-03-18 05:22:53.704 -07 000000610 INF: Z Motor: After move to -0.128528, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:53.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 05:22:53.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:53.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:53.704 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:53.704 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:53.704 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:53.704 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:53.704 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:53.704 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:53.704 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:22:53.704 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:53.704 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 05:22:53.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:53.704 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:53.714 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:53.714 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 05:22:53.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:53.714 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:22:53.714 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 05:22:53.724 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 05:22:53.724 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:22:53.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28254 150\n [Camera] 17-03-18 05:22:53.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:54.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:54.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:54.364 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:54.364 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:54.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:54.364 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:54.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:54.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start. 17-03-18 05:22:54.374 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:54.374 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start. 17-03-18 05:22:54.464 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.989471, 17-03-18 05:22:54.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28254 822 17-03-18 05:22:54.704 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:54.744 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 372 ms. 17-03-18 05:22:54.744 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-18 05:22:54.744 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:54.744 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 05:22:54.744 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 05:22:54.744 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:54.744 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:54.744 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:54.744 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 05:22:54.754 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 05:22:54.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:54.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:54.914 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:54.914 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:54.914 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start. 17-03-18 05:22:54.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:54.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:54.914 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:54.914 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:54.914 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 05:22:55.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:55.104 -07 000000479 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:55.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28254 150' command took 2 ms to send, 1374 ms to get response, and 1382 ms overall 17-03-18 05:22:55.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:55.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128527070916164. ------ 17-03-18 05:22:55.104 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:55.104 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13485 mm 17-03-18 05:22:55.104 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:55.114 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:55.114 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29457, sync = True, waitForSettling = False) 17-03-18 05:22:55.114 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:22:55.114 -07 000000502 INF: Z Motor: Moving to -0.134846 mm, started at -0.128527 mm, distance = -6.32 um 17-03-18 05:22:55.114 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:55.114 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-18 05:22:55.114 -07 000000461 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm 17-03-18 05:22:55.124 -07 000000502 INF: FPGA: Xmit ZDACW 29457\n [Z Motor] 17-03-18 05:22:55.124 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:22:55.134 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:55.134 -07 000000502 INF: FPGA: 'ZDACW 29457' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 05:22:55.134 -07 000000581 INF: FPGA: Recv YRDPOS 146470 17-03-18 05:22:55.144 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 05:22:55.144 -07 000000461 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:55.144 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:55.144 -07 000000606 INF: FPGA: Recv ZDACR 29457 17-03-18 05:22:55.144 -07 000000461 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:55.144 -07 000000461 INF: Y Motor: Moving 1350 steps-30 17-03-18 05:22:55.154 -07 000000502 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:22:55.154 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-18 05:22:55.154 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:55.314 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:55.314 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-18 05:22:55.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 406 ms. 17-03-18 05:22:55.324 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 05:22:55.324 -07 000000447 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:55.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 05:22:55.324 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-18 05:22:55.324 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:55.324 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:22:55.324 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:55.324 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-18 05:22:55.334 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 05:22:55.524 -07 000000424 INF: FPGA: Recv YMVTILE 17-03-18 05:22:55.524 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall 17-03-18 05:22:55.574 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:55.584 -07 000000626 INF: FPGA: Recv YRDPOS 148170 17-03-18 05:22:55.584 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 05:22:55.584 -07 000000461 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:55.584 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-18 05:22:55.584 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.845 mm, average velocity = 2.217 mm/sec 17-03-18 05:22:56.534 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:56.534 -07 000000501 INF: FPGA: Recv YRDPOS 148170 17-03-18 05:22:56.544 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:56.544 -07 000000461 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:56.574 -07 000000461 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:22:56.574 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:22:56.574 -07 000000461 INF: Y Motor: Moved to 72.3486 after 1457 ms (table move) 17-03-18 05:22:56.574 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134846 mm (DAC = 29457) 17-03-18 05:22:56.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.574 -07 000000479 INF: FPGA: Recv ZSGSRD 30283 17-03-18 05:22:56.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 05:22:56.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.584 -07 000000625 INF: FPGA: Recv ZSGSRD 30278 17-03-18 05:22:56.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.594 -07 000000382 INF: FPGA: Recv ZSGSRD 30278 17-03-18 05:22:56.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.604 -07 000000480 INF: FPGA: Recv ZSGSRD 30277 17-03-18 05:22:56.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.614 -07 000000608 INF: FPGA: Recv ZSGSRD 30277 17-03-18 05:22:56.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.624 -07 000000502 INF: FPGA: Recv ZSGSRD 30280 17-03-18 05:22:56.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.634 -07 000000581 INF: FPGA: Recv ZSGSRD 30282 17-03-18 05:22:56.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.644 -07 000000447 INF: FPGA: Recv ZSGSRD 30285 17-03-18 05:22:56.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.654 -07 000000382 INF: FPGA: Recv ZSGSRD 30278 17-03-18 05:22:56.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:56.664 -07 000000608 INF: FPGA: Recv ZSGSRD 30283 17-03-18 05:22:56.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.674 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:56.674 -07 000000626 INF: FPGA: Recv ZPIEZORD 26111 17-03-18 05:22:56.684 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:56.684 -07 000000467 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.495 V. Piezo Error = -9.2 V. 17-03-18 05:22:56.684 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30280 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30279 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30277 (-134.0 uncal um), Max = 30285 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 05:22:56.684 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30280, posNoise = 5, negNoise = 3 17-03-18 05:22:56.684 -07 000000467 INF: Z Motor: After move to -0.134846, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:56.684 -07 000000467 INF: Z Motor: Settle wait time = 1463 ms, measure time = 104 ms (allowed 150 ms), total time = 1567 ms 17-03-18 05:22:56.684 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 05:22:56.734 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms 17-03-18 05:22:56.734 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:22:56.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:56.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:56.734 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:56.734 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:56.734 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:22:56.734 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:56.734 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:56.734 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:22:56.744 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:22:56.744 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:22:56.754 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-18 05:22:56.754 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-18 05:22:56.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:22:56.754 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:22:56.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:22:56.804 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 42 17-03-18 05:22:57.104 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 342 17-03-18 05:22:57.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342 17-03-18 05:22:57.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:22:57.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) start. 17-03-18 05:22:57.134 -07 000000579 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:22:57.134 -07 000000608 INF: FPGA: Recv CAMSNAP 17-03-18 05:22:57.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall 17-03-18 05:22:57.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) end. Duration was 119 ms. 17-03-18 05:22:57.224 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:57.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:22:57.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms. 17-03-18 05:22:57.234 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:57.234 -07 000000461 INF: Autofocus start 17-03-18 05:22:57.234 -07 000000461 INF: MeasureProfile start 17-03-18 05:22:57.234 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:57.244 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:22:57.244 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:22:57.244 -07 000000461 INF: MeasureProfile done 17-03-18 05:22:57.244 -07 000000461 INF: X=16 Z correction [um]=0.0530179 17-03-18 05:22:57.244 -07 000000461 INF: Autofocus finished 17-03-18 05:22:57.444 -07 000000581 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:22:57.444 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:22:57.444 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.134848495663657. ---------- 17-03-18 05:22:57.444 -07 000000610 INF: Cycle 136 Tile 16 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:22:57.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27982, sync = True, waitForSettling = True) 17-03-18 05:22:57.454 -07 000000610 INF: Z Motor: Moving to -0.128093 mm, started at -0.134848 mm, distance = 6.76 um 17-03-18 05:22:57.454 -07 000000610 INF: FPGA: Xmit ZDACW 27982\n [Z Motor] 17-03-18 05:22:57.454 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 05:22:57.464 -07 000000610 INF: FPGA: 'ZDACW 27982' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:22:57.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:57.464 -07 000000608 INF: FPGA: Recv ZDACR 27982 17-03-18 05:22:57.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:22:57.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.624 -07 000000618 INF: FPGA: Recv ZSGSRD 29228 17-03-18 05:22:57.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:57.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.634 -07 000000382 INF: FPGA: Recv ZSGSRD 29231 17-03-18 05:22:57.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29223 17-03-18 05:22:57.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.654 -07 000000626 INF: FPGA: Recv ZSGSRD 29227 17-03-18 05:22:57.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.664 -07 000000579 INF: FPGA: Recv ZSGSRD 29228 17-03-18 05:22:57.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.674 -07 000000474 INF: FPGA: Recv ZSGSRD 29232 17-03-18 05:22:57.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.684 -07 000000512 INF: FPGA: Recv ZSGSRD 29230 17-03-18 05:22:57.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.694 -07 000000424 INF: FPGA: Recv ZSGSRD 29227 17-03-18 05:22:57.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.704 -07 000000625 INF: FPGA: Recv ZSGSRD 29232 17-03-18 05:22:57.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:22:57.714 -07 000000502 INF: FPGA: Recv ZSGSRD 29229 17-03-18 05:22:57.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:22:57.724 -07 000000447 INF: FPGA: Recv ZPIEZORD 24736 17-03-18 05:22:57.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:57.734 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.9 V. 17-03-18 05:22:57.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29229 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29228 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29223 (-127.3 uncal um), Max = 29232 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:22:57.734 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29229, posNoise = 3, negNoise = 6 17-03-18 05:22:57.734 -07 000000610 INF: Z Motor: After move to -0.128093, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:22:57.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:22:57.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:22:57.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:22:57.734 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:22:57.734 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:22:57.734 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:22:57.734 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:22:57.734 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:22:57.734 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:22:57.734 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:22:57.734 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:22:57.734 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:22:57.734 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:22:57.744 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:22:57.744 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:22:57.744 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 05:22:57.744 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:22:57.754 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 05:22:57.754 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:22:57.754 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 05:22:57.754 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:22:57.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28158 150\n [Camera] 17-03-18 05:22:57.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:22:58.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:22:58.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:22:58.394 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:58.394 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:58.394 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 05:22:58.394 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:22:58.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:22:58.394 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:58.394 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:58.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 05:22:58.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28158 822 17-03-18 05:22:58.734 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:22:58.764 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 05:22:58.764 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-18 05:22:58.764 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:58.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms. 17-03-18 05:22:58.774 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 05:22:58.774 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:58.774 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:58.774 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 05:22:58.774 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:58.784 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 05:22:58.944 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:22:58.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:22:58.944 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:22:58.944 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:22:58.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-18 05:22:58.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:22:58.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:22:58.944 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:22:58.944 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:22:58.944 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:22:59.134 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:22:59.134 -07 000000455 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:22:59.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28158 150' command took 2 ms to send, 1374 ms to get response, and 1382 ms overall 17-03-18 05:22:59.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:22:59.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.128096648702666. ------ 17-03-18 05:22:59.134 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:22:59.134 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13473 mm 17-03-18 05:22:59.134 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:22:59.264 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:22:59.264 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 127 ms to get response, and 127 ms overall 17-03-18 05:22:59.264 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29432, sync = True, waitForSettling = False) 17-03-18 05:22:59.264 -07 000000455 INF: Z Motor: Moving to -0.134731 mm, started at -0.128097 mm, distance = -6.63 um 17-03-18 05:22:59.274 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-18 05:22:59.274 -07 000000447 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm 17-03-18 05:22:59.274 -07 000000455 INF: FPGA: Xmit ZDACW 29432\n [Z Motor] 17-03-18 05:22:59.274 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 05:22:59.284 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:22:59.284 -07 000000455 INF: FPGA: 'ZDACW 29432' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:22:59.294 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:59.294 -07 000000467 INF: FPGA: Recv YRDPOS 148171 17-03-18 05:22:59.304 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:22:59.304 -07 000000447 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:59.304 -07 000000447 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:22:59.304 -07 000000447 INF: Y Motor: Moving 1350 steps-29 17-03-18 05:22:59.314 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:22:59.314 -07 000000606 INF: FPGA: Recv ZDACR 29432 17-03-18 05:22:59.324 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:22:59.324 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall 17-03-18 05:22:59.324 -07 000000455 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-18 05:22:59.334 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 05:22:59.344 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 05:22:59.344 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:59.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms. 17-03-18 05:22:59.344 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 05:22:59.344 -07 000000479 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:22:59.344 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:22:59.344 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 05:22:59.344 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 05:22:59.354 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-18 05:22:59.484 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:22:59.484 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall 17-03-18 05:22:59.704 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 05:22:59.704 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall 17-03-18 05:22:59.754 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:22:59.754 -07 000000626 INF: FPGA: Recv YRDPOS 149863 17-03-18 05:22:59.764 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:22:59.764 -07 000000447 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:22:59.764 -07 000000447 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm) 17-03-18 05:22:59.764 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec 17-03-18 05:22:59.824 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.962185, 17-03-18 05:23:00.714 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:00.714 -07 000000474 INF: FPGA: Recv YRDPOS 149863 17-03-18 05:23:00.724 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:00.724 -07 000000447 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:00.754 -07 000000447 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:23:00.754 -07 000000447 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:23:00.754 -07 000000447 INF: Y Motor: Moved to 73.1753 after 1481 ms (table move) 17-03-18 05:23:00.754 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134731 mm (DAC = 29432) 17-03-18 05:23:00.754 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.754 -07 000000501 INF: FPGA: Recv ZSGSRD 30266 17-03-18 05:23:00.764 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:23:00.764 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.764 -07 000000512 INF: FPGA: Recv ZSGSRD 30263 17-03-18 05:23:00.774 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.774 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.774 -07 000000606 INF: FPGA: Recv ZSGSRD 30270 17-03-18 05:23:00.784 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.784 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.784 -07 000000581 INF: FPGA: Recv ZSGSRD 30260 17-03-18 05:23:00.794 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.794 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.794 -07 000000447 INF: FPGA: Recv ZSGSRD 30261 17-03-18 05:23:00.804 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.804 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.804 -07 000000512 INF: FPGA: Recv ZSGSRD 30268 17-03-18 05:23:00.814 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:23:00.814 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.814 -07 000000467 INF: FPGA: Recv ZSGSRD 30258 17-03-18 05:23:00.824 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.824 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.824 -07 000000502 INF: FPGA: Recv ZSGSRD 30255 17-03-18 05:23:00.834 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.834 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.834 -07 000000608 INF: FPGA: Recv ZSGSRD 30263 17-03-18 05:23:00.844 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.844 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:00.844 -07 000000501 INF: FPGA: Recv ZSGSRD 30264 17-03-18 05:23:00.854 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.854 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:23:00.854 -07 000000626 INF: FPGA: Recv ZPIEZORD 26093 17-03-18 05:23:00.864 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:00.864 -07 000000461 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.2 V. 17-03-18 05:23:00.864 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30263 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30263 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30255 (-133.9 uncal um), Max = 30270 (-134.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:23:00.864 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30263, posNoise = 7, negNoise = 8 17-03-18 05:23:00.864 -07 000000461 INF: Z Motor: After move to -0.134731, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:23:00.864 -07 000000461 INF: Z Motor: Settle wait time = 1485 ms, measure time = 105 ms (allowed 150 ms), total time = 1590 ms 17-03-18 05:23:00.864 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 05:23:00.914 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1770 ms 17-03-18 05:23:00.914 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:23:00.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:23:00.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:23:00.914 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:23:00.914 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:23:00.914 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:23:00.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:23:00.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 05:23:00.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:23:00.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:23:00.924 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:23:00.924 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 05:23:00.924 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 05:23:00.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:23:00.974 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:23:01.274 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:23:01.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:23:01.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:23:01.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:23:01.314 -07 000000467 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:23:01.314 -07 000000608 INF: FPGA: Recv CAMSNAP 17-03-18 05:23:01.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 05:23:01.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 05:23:01.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:01.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:23:01.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 05:23:01.414 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:23:01.414 -07 000000512 INF: Autofocus start 17-03-18 05:23:01.414 -07 000000512 INF: MeasureProfile start 17-03-18 05:23:01.414 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:23:01.424 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 05:23:01.424 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:23:01.424 -07 000000512 INF: MeasureProfile done 17-03-18 05:23:01.424 -07 000000512 INF: X=0 Z correction [um]=-0.02394831 17-03-18 05:23:01.424 -07 000000512 INF: Autofocus finished 17-03-18 05:23:01.624 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:23:01.624 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:23:01.624 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134739284057247. ---------- 17-03-18 05:23:01.634 -07 000000610 INF: Cycle 136 Tile 17 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:23:01.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27939, sync = True, waitForSettling = True) 17-03-18 05:23:01.634 -07 000000610 INF: Z Motor: Moving to -0.127897 mm, started at -0.134739 mm, distance = 6.84 um 17-03-18 05:23:01.634 -07 000000610 INF: FPGA: Xmit ZDACW 27939\n [Z Motor] 17-03-18 05:23:01.634 -07 000000447 INF: FPGA: Recv ZDACW 17-03-18 05:23:01.644 -07 000000610 INF: FPGA: 'ZDACW 27939' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:23:01.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:23:01.644 -07 000000502 INF: FPGA: Recv ZDACR 27939 17-03-18 05:23:01.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:23:01.754 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:23:01.754 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:23:01.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.804 -07 000000447 INF: FPGA: Recv ZSGSRD 29200 17-03-18 05:23:01.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.814 -07 000000579 INF: FPGA: Recv ZSGSRD 29201 17-03-18 05:23:01.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.824 -07 000000606 INF: FPGA: Recv ZSGSRD 29193 17-03-18 05:23:01.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.834 -07 000000626 INF: FPGA: Recv ZSGSRD 29191 17-03-18 05:23:01.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29203 17-03-18 05:23:01.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.854 -07 000000569 INF: FPGA: Recv ZSGSRD 29207 17-03-18 05:23:01.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.864 -07 000000455 INF: FPGA: Recv ZSGSRD 29197 17-03-18 05:23:01.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.874 -07 000000480 INF: FPGA: Recv ZSGSRD 29199 17-03-18 05:23:01.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29199 17-03-18 05:23:01.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:01.894 -07 000000467 INF: FPGA: Recv ZSGSRD 29199 17-03-18 05:23:01.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:23:01.904 -07 000000447 INF: FPGA: Recv ZPIEZORD 24666 17-03-18 05:23:01.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:01.914 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.9 V. 17-03-18 05:23:01.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29199 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29199 (-127.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29191 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 05:23:01.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29199, posNoise = 8, negNoise = 8 17-03-18 05:23:01.914 -07 000000610 INF: Z Motor: After move to -0.127897, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:23:01.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-18 05:23:01.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:23:01.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:23:01.914 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:23:01.914 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:23:01.914 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:23:01.914 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:23:01.914 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:23:01.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:23:01.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:23:01.914 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:23:01.914 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:23:01.914 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:23:01.924 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:23:01.924 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:23:01.924 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:23:01.924 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:23:01.934 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 05:23:01.934 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 05:23:01.934 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 05:23:01.934 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 05:23:01.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 28116 150\n [Camera] 17-03-18 05:23:02.134 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:23:02.574 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:23:02.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:23:02.574 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:23:02.574 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:23:02.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:23:02.574 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:23:02.574 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:23:02.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:23:02.584 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:23:02.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:23:02.764 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28116 822 17-03-18 05:23:02.914 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:23:02.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 05:23:02.964 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 05:23:02.964 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:02.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms. 17-03-18 05:23:02.964 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 05:23:02.964 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:02.964 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:23:02.974 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 05:23:02.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:23:02.974 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:23:03.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:23:03.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:23:03.124 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:23:03.124 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:23:03.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:23:03.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:23:03.134 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:23:03.134 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 05:23:03.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:23:03.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 05:23:03.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:23:03.314 -07 000000461 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:23:03.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 28116 150' command took 2 ms to send, 1376 ms to get response, and 1382 ms overall 17-03-18 05:23:03.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:23:03.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127903922338413. ------ 17-03-18 05:23:03.324 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:23:03.324 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13378 mm 17-03-18 05:23:03.324 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:23:03.324 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-18 05:23:03.324 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm 17-03-18 05:23:03.444 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:03.454 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:23:03.454 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 127 ms overall 17-03-18 05:23:03.454 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29224, sync = True, waitForSettling = False) 17-03-18 05:23:03.454 -07 000000608 INF: Z Motor: Moving to -0.133779 mm, started at -0.127904 mm, distance = -5.87 um 17-03-18 05:23:03.454 -07 000000382 INF: FPGA: Recv YRDPOS 149863 17-03-18 05:23:03.464 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 134 ms overall 17-03-18 05:23:03.464 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:03.464 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:23:03.464 -07 000000424 INF: Y Motor: Moving 1356 steps-35 17-03-18 05:23:03.464 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:23:03.474 -07 000000608 INF: FPGA: Xmit ZDACW 29224\n [Z Motor] 17-03-18 05:23:03.474 -07 000000467 INF: FPGA: Recv ZDACW 17-03-18 05:23:03.484 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:23:03.484 -07 000000608 INF: FPGA: 'ZDACW 29224' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:23:03.494 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:23:03.494 -07 000000467 INF: FPGA: Recv ZDACR 29224 17-03-18 05:23:03.504 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:23:03.504 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 05:23:03.534 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 05:23:03.534 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 05:23:03.534 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:03.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 05:23:03.534 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 05:23:03.534 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:03.534 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:03.534 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-18 05:23:03.534 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:03.544 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 05:23:03.664 -07 000000474 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:23:03.664 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall 17-03-18 05:23:03.854 -07 000000467 INF: FPGA: Recv YMVTILE 17-03-18 05:23:03.854 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 05:23:03.894 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:03.904 -07 000000581 INF: FPGA: Recv YRDPOS 151567 17-03-18 05:23:03.904 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 05:23:03.904 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:03.904 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 05:23:03.904 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.134 mm/sec 17-03-18 05:23:04.854 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:04.854 -07 000000581 INF: FPGA: Recv YRDPOS 151567 17-03-18 05:23:04.864 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:04.864 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:04.884 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:23:04.884 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:23:04.884 -07 000000424 INF: Y Motor: Moved to 74.0073 after 1560 ms (table move) 17-03-18 05:23:04.884 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133779 mm (DAC = 29224) 17-03-18 05:23:04.884 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.894 -07 000000382 INF: FPGA: Recv ZSGSRD 30120 17-03-18 05:23:04.894 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 05:23:04.894 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.894 -07 000000455 INF: FPGA: Recv ZSGSRD 30109 17-03-18 05:23:04.904 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:23:04.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.904 -07 000000479 INF: FPGA: Recv ZSGSRD 30114 17-03-18 05:23:04.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30114 17-03-18 05:23:04.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.924 -07 000000512 INF: FPGA: Recv ZSGSRD 30115 17-03-18 05:23:04.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.934 -07 000000382 INF: FPGA: Recv ZSGSRD 30110 17-03-18 05:23:04.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.944 -07 000000455 INF: FPGA: Recv ZSGSRD 30111 17-03-18 05:23:04.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.954 -07 000000579 INF: FPGA: Recv ZSGSRD 30110 17-03-18 05:23:04.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.964 -07 000000447 INF: FPGA: Recv ZSGSRD 30118 17-03-18 05:23:04.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.974 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:04.974 -07 000000502 INF: FPGA: Recv ZSGSRD 30118 17-03-18 05:23:04.984 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.984 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:23:04.984 -07 000000501 INF: FPGA: Recv ZPIEZORD 25914 17-03-18 05:23:04.994 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:04.994 -07 000000606 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.459 V. Piezo Error = -9.2 V. 17-03-18 05:23:04.994 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30114 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30114 (-133.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30109 (-133.0 uncal um), Max = 30120 (-133.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:23:04.994 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30114, posNoise = 6, negNoise = 5 17-03-18 05:23:04.994 -07 000000606 INF: Z Motor: After move to -0.133779, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:23:04.994 -07 000000606 INF: Z Motor: Settle wait time = 1438 ms, measure time = 101 ms (allowed 150 ms), total time = 1539 ms 17-03-18 05:23:04.994 -07 000000606 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-18 05:23:05.044 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1717 ms 17-03-18 05:23:05.044 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:23:05.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:23:05.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:23:05.044 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:23:05.044 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:23:05.044 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:23:05.044 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:23:05.044 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:23:05.044 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:23:05.054 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 05:23:05.054 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:23:05.064 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 05:23:05.064 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 05:23:05.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:23:05.114 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:23:05.184 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.977204, 17-03-18 05:23:05.414 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:23:05.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:23:05.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:23:05.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) start. 17-03-18 05:23:05.454 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:23:05.454 -07 000000467 INF: FPGA: Recv CAMSNAP 17-03-18 05:23:05.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-18 05:23:05.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576162112, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 05:23:05.534 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:05.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:23:05.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 05:23:05.554 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:23:05.554 -07 000000608 INF: Autofocus start 17-03-18 05:23:05.554 -07 000000608 INF: MeasureProfile start 17-03-18 05:23:05.554 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:23:05.564 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:23:05.564 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:23:05.564 -07 000000608 INF: MeasureProfile done 17-03-18 05:23:05.564 -07 000000608 INF: X=0 Z correction [um]=-0.02394831 17-03-18 05:23:05.564 -07 000000608 INF: Autofocus finished 17-03-18 05:23:05.764 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:23:05.764 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:23:05.764 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133782076448124. ---------- 17-03-18 05:23:05.764 -07 000000610 INF: Cycle 136 Tile 18 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:23:05.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27731, sync = True, waitForSettling = True) 17-03-18 05:23:05.774 -07 000000610 INF: Z Motor: Moving to -0.126944 mm, started at -0.133782 mm, distance = 6.84 um 17-03-18 05:23:05.774 -07 000000610 INF: FPGA: Xmit ZDACW 27731\n [Z Motor] 17-03-18 05:23:05.774 -07 000000382 INF: FPGA: Recv ZDACW 17-03-18 05:23:05.784 -07 000000610 INF: FPGA: 'ZDACW 27731' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 05:23:05.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:23:05.784 -07 000000479 INF: FPGA: Recv ZDACR 27731 17-03-18 05:23:05.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:05.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:23:05.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:05.944 -07 000000606 INF: FPGA: Recv ZSGSRD 29052 17-03-18 05:23:05.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:05.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:05.954 -07 000000461 INF: FPGA: Recv ZSGSRD 29045 17-03-18 05:23:05.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:05.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:05.964 -07 000000424 INF: FPGA: Recv ZSGSRD 29047 17-03-18 05:23:05.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:05.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:05.974 -07 000000382 INF: FPGA: Recv ZSGSRD 29047 17-03-18 05:23:05.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:05.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:05.984 -07 000000479 INF: FPGA: Recv ZSGSRD 29051 17-03-18 05:23:05.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:05.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:05.994 -07 000000455 INF: FPGA: Recv ZSGSRD 29053 17-03-18 05:23:06.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:06.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:06.004 -07 000000581 INF: FPGA: Recv ZSGSRD 29048 17-03-18 05:23:06.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:06.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:06.014 -07 000000512 INF: FPGA: Recv ZSGSRD 29055 17-03-18 05:23:06.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:06.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:06.024 -07 000000625 INF: FPGA: Recv ZSGSRD 29055 17-03-18 05:23:06.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:06.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:06.034 -07 000000501 INF: FPGA: Recv ZSGSRD 29049 17-03-18 05:23:06.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:06.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:23:06.044 -07 000000467 INF: FPGA: Recv ZPIEZORD 24512 17-03-18 05:23:06.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:06.054 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -10.0 V. 17-03-18 05:23:06.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29050 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29050 (-126.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29045 (-126.1 uncal um), Max = 29055 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:23:06.054 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29050, posNoise = 5, negNoise = 5 17-03-18 05:23:06.054 -07 000000610 INF: Z Motor: After move to -0.126944, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:23:06.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 05:23:06.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:23:06.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:23:06.054 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:23:06.054 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:23:06.054 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:23:06.054 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:23:06.054 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:23:06.054 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:23:06.054 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:23:06.054 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:23:06.054 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:23:06.054 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:23:06.064 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:23:06.064 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:23:06.064 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:23:06.064 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:23:06.074 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-18 05:23:06.074 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 05:23:06.074 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-18 05:23:06.074 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 05:23:06.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 27908 150\n [Camera] 17-03-18 05:23:06.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:23:06.714 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:23:06.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:23:06.714 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:23:06.714 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:23:06.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:23:06.714 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:23:06.714 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:23:06.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 05:23:06.724 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:23:06.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 05:23:06.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:23:06.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:23:06.904 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27908 822 17-03-18 05:23:07.054 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972 17-03-18 05:23:07.094 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms. 17-03-18 05:23:07.094 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms. 17-03-18 05:23:07.094 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:07.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms. 17-03-18 05:23:07.094 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms. 17-03-18 05:23:07.094 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:07.094 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:07.094 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 05:23:07.094 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:07.104 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 05:23:07.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:23:07.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:23:07.264 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:23:07.264 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:23:07.264 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start. 17-03-18 05:23:07.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:23:07.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:23:07.274 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:23:07.274 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:23:07.274 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start. 17-03-18 05:23:07.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:23:07.454 -07 000000501 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:23:07.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 27908 150' command took 2 ms to send, 1378 ms to get response, and 1382 ms overall 17-03-18 05:23:07.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 05:23:07.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.126946714729291. ------ 17-03-18 05:23:07.464 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:23:07.464 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13341 mm 17-03-18 05:23:07.464 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 05:23:07.464 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:23:07.464 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29142, sync = True, waitForSettling = False) 17-03-18 05:23:07.464 -07 000000455 INF: Z Motor: Moving to -0.133404 mm, started at -0.126947 mm, distance = -6.46 um 17-03-18 05:23:07.464 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-18 05:23:07.464 -07 000000608 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm 17-03-18 05:23:07.474 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:23:07.474 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:07.474 -07 000000581 INF: FPGA: Recv YRDPOS 151567 17-03-18 05:23:07.484 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:07.484 -07 000000608 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:07.484 -07 000000608 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 05:23:07.484 -07 000000608 INF: Y Motor: Moving 1352 steps-31 17-03-18 05:23:07.484 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 05:23:07.494 -07 000000455 INF: FPGA: Xmit ZDACW 29142\n [Z Motor] 17-03-18 05:23:07.494 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 05:23:07.504 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 05:23:07.504 -07 000000455 INF: FPGA: 'ZDACW 29142' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 05:23:07.514 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:23:07.514 -07 000000480 INF: FPGA: Recv ZDACR 29142 17-03-18 05:23:07.524 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:23:07.524 -07 000000455 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-18 05:23:07.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 390 ms. 17-03-18 05:23:07.664 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 05:23:07.664 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:07.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 05:23:07.664 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 05:23:07.664 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 05:23:07.664 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:07.674 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 05:23:07.674 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 05:23:07.674 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 05:23:07.684 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 05:23:07.684 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 05:23:07.874 -07 000000424 INF: FPGA: Recv YMVTILE 17-03-18 05:23:07.874 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall 17-03-18 05:23:07.904 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:07.914 -07 000000618 INF: FPGA: Recv YRDPOS 153254 17-03-18 05:23:07.924 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:07.924 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:07.924 -07 000000608 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm) 17-03-18 05:23:07.924 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec 17-03-18 05:23:08.874 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 05:23:08.874 -07 000000606 INF: FPGA: Recv YRDPOS 153254 17-03-18 05:23:08.884 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:08.884 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 05:23:08.894 -07 000000608 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 05:23:08.904 -07 000000608 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 05:23:08.904 -07 000000608 INF: Y Motor: Moved to 74.8311 after 1430 ms (table move) 17-03-18 05:23:08.904 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133404 mm (DAC = 29142) 17-03-18 05:23:08.904 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.904 -07 000000455 INF: FPGA: Recv ZSGSRD 30057 17-03-18 05:23:08.914 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 05:23:08.914 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.914 -07 000000461 INF: FPGA: Recv ZSGSRD 30053 17-03-18 05:23:08.924 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.924 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.924 -07 000000501 INF: FPGA: Recv ZSGSRD 30061 17-03-18 05:23:08.934 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.934 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.934 -07 000000512 INF: FPGA: Recv ZSGSRD 30064 17-03-18 05:23:08.944 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.944 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.944 -07 000000479 INF: FPGA: Recv ZSGSRD 30058 17-03-18 05:23:08.954 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.954 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.954 -07 000000581 INF: FPGA: Recv ZSGSRD 30054 17-03-18 05:23:08.964 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.964 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.964 -07 000000502 INF: FPGA: Recv ZSGSRD 30057 17-03-18 05:23:08.974 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.974 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.974 -07 000000424 INF: FPGA: Recv ZSGSRD 30056 17-03-18 05:23:08.984 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.984 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.984 -07 000000626 INF: FPGA: Recv ZSGSRD 30052 17-03-18 05:23:08.994 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:08.994 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:08.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30050 17-03-18 05:23:09.004 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:09.004 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:23:09.004 -07 000000581 INF: FPGA: Recv ZPIEZORD 25862 17-03-18 05:23:09.014 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:09.014 -07 000000625 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.447 V. Piezo Error = -9.2 V. 17-03-18 05:23:09.014 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30056 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30056 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30050 (-132.6 uncal um), Max = 30064 (-132.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 05:23:09.014 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30056, posNoise = 8, negNoise = 6 17-03-18 05:23:09.014 -07 000000625 INF: Z Motor: After move to -0.133404, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:23:09.014 -07 000000625 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms 17-03-18 05:23:09.014 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 05:23:09.064 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms 17-03-18 05:23:09.064 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 05:23:09.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:23:09.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:23:09.064 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:23:09.064 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:23:09.064 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 05:23:09.064 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:23:09.064 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:23:09.064 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 05:23:09.074 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 05:23:09.074 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 05:23:09.074 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 05:23:09.074 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 05:23:09.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 05:23:09.124 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 05:23:09.424 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 05:23:09.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 05:23:09.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 05:23:09.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) start. 17-03-18 05:23:09.464 -07 000000479 INF: FPGA: Recv @CAMSNAP 380 17-03-18 05:23:09.464 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-18 05:23:09.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 05:23:09.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 595243496, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 05:23:09.544 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:09.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 05:23:09.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 05:23:09.564 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 05:23:09.564 -07 000000579 INF: Autofocus start 17-03-18 05:23:09.564 -07 000000579 INF: MeasureProfile start 17-03-18 05:23:09.564 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-18 05:23:09.574 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:23:09.574 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 05:23:09.574 -07 000000579 INF: MeasureProfile done 17-03-18 05:23:09.574 -07 000000579 INF: X=0 Z correction [um]=-0.02394831 17-03-18 05:23:09.574 -07 000000579 INF: Autofocus finished 17-03-18 05:23:09.774 -07 000000474 INF: FPGA: Recv FOCMRRIMG 17-03-18 05:23:09.774 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 05:23:09.774 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133409472143902. ---------- 17-03-18 05:23:09.784 -07 000000610 INF: Cycle 136 Tile 19 Exposure Settings A 437 G 210 T 210 C 437 17-03-18 05:23:09.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27650, sync = True, waitForSettling = True) 17-03-18 05:23:09.784 -07 000000610 INF: Z Motor: Moving to -0.126574 mm, started at -0.133409 mm, distance = 6.84 um 17-03-18 05:23:09.784 -07 000000610 INF: FPGA: Xmit ZDACW 27650\n [Z Motor] 17-03-18 05:23:09.784 -07 000000479 INF: FPGA: Recv ZDACW 17-03-18 05:23:09.794 -07 000000610 INF: FPGA: 'ZDACW 27650' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 05:23:09.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 05:23:09.794 -07 000000461 INF: FPGA: Recv ZDACR 27650 17-03-18 05:23:09.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:09.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 05:23:09.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:09.954 -07 000000474 INF: FPGA: Recv ZSGSRD 28992 17-03-18 05:23:09.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 05:23:09.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:09.964 -07 000000606 INF: FPGA: Recv ZSGSRD 28995 17-03-18 05:23:09.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:09.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:09.974 -07 000000579 INF: FPGA: Recv ZSGSRD 28995 17-03-18 05:23:09.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:09.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:09.984 -07 000000618 INF: FPGA: Recv ZSGSRD 28991 17-03-18 05:23:09.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:09.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:09.994 -07 000000512 INF: FPGA: Recv ZSGSRD 28994 17-03-18 05:23:10.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:10.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:10.004 -07 000000501 INF: FPGA: Recv ZSGSRD 28987 17-03-18 05:23:10.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:10.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:10.014 -07 000000512 INF: FPGA: Recv ZSGSRD 28997 17-03-18 05:23:10.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:10.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:10.024 -07 000000501 INF: FPGA: Recv ZSGSRD 28987 17-03-18 05:23:10.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:10.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:10.044 -07 000000608 INF: FPGA: Recv ZSGSRD 28990 17-03-18 05:23:10.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 05:23:10.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 05:23:10.074 -07 000000579 INF: FPGA: Recv ZSGSRD 28994 17-03-18 05:23:10.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 05:23:10.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 05:23:10.084 -07 000000467 INF: FPGA: Recv ZPIEZORD 24484 17-03-18 05:23:10.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 05:23:10.094 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.219 V. Piezo Error = -9.9 V. 17-03-18 05:23:10.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28992 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28993 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28987 (-125.8 uncal um), Max = 28997 (-125.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 05:23:10.094 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28992, posNoise = 5, negNoise = 5 17-03-18 05:23:10.094 -07 000000610 INF: Z Motor: After move to -0.126574, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 05:23:10.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms) 17-03-18 05:23:10.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 05:23:10.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 05:23:10.094 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 05:23:10.094 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 05:23:10.094 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 05:23:10.104 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 05:23:10.104 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 05:23:10.104 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 05:23:10.104 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 05:23:10.104 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 05:23:10.104 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 05:23:10.104 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 05:23:10.104 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 05:23:10.104 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 05:23:10.104 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 05:23:10.104 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 05:23:10.124 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 05:23:10.124 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 05:23:10.124 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 05:23:10.124 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 05:23:10.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 437 437 210 210 27826 150\n [Camera] 17-03-18 05:23:10.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 05:23:10.544 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.975845, 17-03-18 05:23:10.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629 17-03-18 05:23:10.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629 17-03-18 05:23:10.764 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:23:10.764 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:23:10.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start. 17-03-18 05:23:10.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629 17-03-18 05:23:10.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629 17-03-18 05:23:10.764 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:23:10.764 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:23:10.764 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start. 17-03-18 05:23:10.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27826 822 17-03-18 05:23:11.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973 17-03-18 05:23:11.154 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 05:23:11.154 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 05:23:11.154 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:11.154 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 05:23:11.154 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 05:23:11.154 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:11.164 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:11.164 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:11.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 05:23:11.164 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 05:23:11.314 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1182 17-03-18 05:23:11.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1182 17-03-18 05:23:11.314 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 05:23:11.314 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 05:23:11.314 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start. 17-03-18 05:23:11.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1182 17-03-18 05:23:11.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1182 17-03-18 05:23:11.314 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 05:23:11.314 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 05:23:11.314 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 05:23:11.504 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1375 17-03-18 05:23:11.504 -07 000000502 INF: FPGA: Recv CAMDBLSNAP 17-03-18 05:23:11.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 437 437 210 210 27826 150' command took 2 ms to send, 1376 ms to get response, and 1384 ms overall 17-03-18 05:23:11.724 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 406 ms. 17-03-18 05:23:11.724 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 05:23:11.724 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:11.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms. 17-03-18 05:23:11.724 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-18 05:23:11.724 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 05:23:11.724 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 05:23:11.734 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 05:23:11.734 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms. 17-03-18 05:23:11.734 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-18 05:23:11.734 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 05:23:11.754 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 05:23:11.884 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 158 ms. 17-03-18 05:23:11.894 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-18 05:23:11.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 135. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval. 17-03-18 05:23:11.934 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-18 05:23:11.944 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles. 17-03-18 05:23:11.944 -07 000000610 INF: Imaging Cycle 136: ScanTilesCommand Cycle 136 time end. Duration was 163884 ms. 17-03-18 05:23:11.944 -07 000000610 INF: =================== Cycle #136 =================== 17-03-18 05:23:11.944 -07 000000610 INF: =================== =================== 17-03-18 05:23:11.944 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-18 05:23:11.944 -07 000000479 INF: FPGA: Recv EXLED1ADCR 27 17-03-18 05:23:11.954 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 05:23:11.954 -07 000000467 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW 17-03-18 05:23:11.954 -07 000000467 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 136, FrontChillerTemperature: 3.975845, FrontChillerHeatSinkTemperature: 0.622375, AmbientTemperature: 18.71578, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.45813, GreenLEDSensorTemperature: 27.07806, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235 17-03-18 05:23:12.064 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.