17-03-18 05:23:12.114 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:12.114 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:23:12.114 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 05:23:12.114 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:23:12.114 -07 000000606 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:23:12.124 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:23:12.124 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:23:12.124 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:23:12.124 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:23:12.124 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:23:12.244 -07 000000467 INF: FPGA: Recv YMVTO 154378 872
17-03-18 05:23:12.244 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 116 ms overall
17-03-18 05:23:12.244 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:23:12.244 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:23:12.244 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 05:23:15.244 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:23:15.244 -07 000000625 INF: FPGA: Recv YRDPOS 154377
17-03-18 05:23:15.254 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:23:15.254 -07 000000610 INF: Y Motor: Encoder = 154377 = motor step 120607.0 = 75.3794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:23:15.284 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.001185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:23:15.284 -07 000000610 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -1 counts (0.000 mm)
17-03-18 05:23:15.284 -07 000000610 INF: Y Motor: Moved to 75.3794 after 3169 ms
17-03-18 05:23:15.284 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 60° ===================
17-03-18 05:23:15.294 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:23:15.474 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:23:15.474 -07 000000479 INF: FPGA: Recv TEC2EN 
17-03-18 05:23:15.484 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:23:15.484 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 60° ===================
17-03-18 05:23:15.484 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:15.484 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:23:15.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:15.514 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:23:15.514 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:23:15.514 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:23:15.814 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:23:15.834 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:23:15.834 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:23:15.884 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:15.904 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:23:15.904 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:23:15.904 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.000345,
17-03-18 05:23:16.004 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:16.004 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:23:16.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:16.034 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:23:16.034 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:23:16.034 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:23:16.164 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:23:16.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:16.754 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:23:16.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1850, R2=1919, Total=3769. Warn if over 250 bubbles per interval.
17-03-18 05:23:19.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:19.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:19.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:19.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:20.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:20.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:20.264 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:23:20.264 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:20.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:20.424 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:23:20.424 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:23:20.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:20.584 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:23:20.584 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:23:20.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:23:20.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:23:20.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:21.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:21.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:21.204 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:23:21.204 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:21.264 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.001704,
17-03-18 05:23:21.764 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-18 05:23:21.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1856, R2=1923, Total=3779. Warn if over 250 bubbles per interval.
17-03-18 05:23:22.424 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:23:22.424 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:23:22.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:22.444 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:23:22.444 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:23:22.444 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:23:22.574 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:23:22.594 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:23:22.594 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:23:22.644 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:22.664 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:23:22.664 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:23:22.764 -07 000000610 INF: =================== Cycle #137, Pumping Reagent CMS (4) ===================
17-03-18 05:23:22.764 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:23:22.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:22.794 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:23:22.794 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:23:22.794 -07 000000610 INF: =================== Cycle #137, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:23:22.924 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:23:22.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:24.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:24.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:24.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:24.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:24.884 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 05:23:24.884 -07 000000610 INF: =================== Cycle #137, Pumping Reagent CMS (4) ===================
17-03-18 05:23:25.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:25.044 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:23:25.044 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:23:25.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:25.204 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:23:25.204 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:23:25.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:23:25.334 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:23:25.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:25.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:25.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:25.824 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:23:25.824 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:26.624 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.997626,
17-03-18 05:23:26.764 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 0
17-03-18 05:23:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=3, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1856, R2=1926, Total=3782. Warn if over 250 bubbles per interval.
17-03-18 05:23:27.044 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:23:27.044 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:23:27.044 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:27.064 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:23:27.064 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:23:27.064 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:23:27.214 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:23:27.234 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:23:27.234 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:23:27.284 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:27.304 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:23:27.304 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:23:27.404 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:27.404 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:23:27.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:27.434 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:23:27.434 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:23:27.434 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:23:27.564 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:23:27.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:28.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:28.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:28.504 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:23:28.504 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:28.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:28.664 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:23:28.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:23:28.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:28.824 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:23:28.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:23:28.824 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:23:28.954 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:23:28.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:29.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:29.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:29.444 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:23:29.444 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:29.444 -07 000000424 INF: WaitCommand(10000) start
17-03-18 05:23:29.444 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:23:29.444 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:23:30.664 -07 000000480 INF: AsyncDelayTimer waited 1215ms
17-03-18 05:23:30.664 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-18 05:23:30.694 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:23:30.694 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:23:30.824 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:23:30.864 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:31.764 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 05:23:31.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1858, R2=1926, Total=3784. Warn if over 250 bubbles per interval.
17-03-18 05:23:31.984 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.012614,
17-03-18 05:23:32.394 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:32.424 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:32.844 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:32.874 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:32.874 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:23:32.874 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:23:32.874 -07 000000480 INF: ===================  ===================
17-03-18 05:23:36.764 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:23:36.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1858, R2=1926, Total=3784. Warn if over 250 bubbles per interval.
17-03-18 05:23:37.344 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.016692,
17-03-18 05:23:39.454 -07 000000424 INF: WaitCommand(10000) end
17-03-18 05:23:39.454 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:39.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:23:39.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:39.484 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:23:39.484 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:23:39.484 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:23:39.614 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:23:39.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:41.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 05:23:41.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1858, R2=1928, Total=3786. Warn if over 250 bubbles per interval.
17-03-18 05:23:42.704 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.989471,
17-03-18 05:23:45.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:45.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:46.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:46.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:46.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:46.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:46.764 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:23:46.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1858, R2=1928, Total=3786. Warn if over 250 bubbles per interval.
17-03-18 05:23:47.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:47.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:47.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:47.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:47.614 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:23:47.614 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:47.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:47.774 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:23:47.774 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:23:47.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:47.934 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:23:47.934 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:23:47.934 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:23:48.064 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:23:48.064 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.011254,
17-03-18 05:23:48.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:48.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:48.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:48.554 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:23:48.554 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:49.774 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:23:49.774 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:23:49.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:49.794 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:23:49.794 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:23:49.794 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:23:50.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:23:50.024 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:23:50.024 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:23:50.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:50.094 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:23:50.094 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:23:50.194 -07 000000610 INF: =================== Cycle #137, Pumping Reagent IMT (1) ===================
17-03-18 05:23:50.194 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:23:50.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:50.224 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:23:50.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:23:50.224 -07 000000610 INF: =================== Cycle #137, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:23:50.354 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:23:50.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:51.764 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 05:23:51.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:23:51.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:51.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:52.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:52.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:52.314 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:23:52.314 -07 000000610 INF: =================== Cycle #137, Pumping Reagent IMT (1) ===================
17-03-18 05:23:52.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:52.474 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:23:52.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:23:52.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:52.634 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:23:52.634 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:23:52.634 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:23:52.764 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:23:52.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:53.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:53.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:53.254 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:23:53.254 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:53.424 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.988112,
17-03-18 05:23:54.474 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:23:54.474 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:23:54.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:54.494 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:23:54.494 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:23:54.494 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:23:54.724 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:23:54.744 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:23:54.744 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:23:54.794 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:23:54.814 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:23:54.814 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:23:54.914 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:54.914 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:23:54.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:54.944 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:23:54.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:23:54.944 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:23:55.074 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:23:55.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:23:55.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:56.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:56.014 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:23:56.014 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:23:56.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:56.174 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:23:56.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:23:56.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:23:56.334 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:23:56.334 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:23:56.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:23:56.464 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:23:56.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:56.764 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:23:56.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:23:56.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:23:56.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:23:56.954 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:23:56.954 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:56.954 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 65° ===================
17-03-18 05:23:56.954 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:23:56.954 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:23:56.954 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:23:56.964 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:23:56.964 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:23:56.964 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 05:23:56.974 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:23:56.974 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 65° ===================
17-03-18 05:23:56.974 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:23:56.974 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:23:58.784 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.973092,
17-03-18 05:24:01.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:01.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:04.144 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.974486,
17-03-18 05:24:06.764 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:06.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:09.504 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.99219,
17-03-18 05:24:11.764 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:11.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:14.864 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.994908,
17-03-18 05:24:16.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:16.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:20.224 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.996267,
17-03-18 05:24:21.764 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:21.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:25.584 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.996267,
17-03-18 05:24:26.764 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:26.984 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:24:26.984 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:24:26.984 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:24:27.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:24:27.114 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:24:27.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:24:27.114 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:24:27.244 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:24:27.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:24:27.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:24:27.854 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:24:27.854 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:24:27.854 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:24:27.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:24:28.014 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:24:28.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:24:28.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:24:28.174 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:24:28.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:24:28.174 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:24:28.304 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:24:28.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:24:28.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:24:28.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:24:28.794 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:24:28.794 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:24:28.794 -07 000000606 INF: WaitCommand(30000) start
17-03-18 05:24:28.794 -07 000000581 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:24:28.794 -07 000000581 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:24:30.014 -07 000000581 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:24:30.014 -07 000000581 INF: LanePump: Xmit /1?\r
17-03-18 05:24:30.044 -07 000000581 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:24:30.044 -07 000000581 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:24:30.174 -07 000000581 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:24:30.214 -07 000000581 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:24:30.944 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.026244,
17-03-18 05:24:31.764 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:31.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:32.554 -07 000000581 INF: LanePump: Xmit /1Q\r
17-03-18 05:24:32.584 -07 000000581 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:24:33.004 -07 000000581 INF: LanePump: Xmit /1Q\r
17-03-18 05:24:33.034 -07 000000581 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:24:33.034 -07 000000581 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:24:33.034 -07 000000581 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:24:33.034 -07 000000581 INF: ===================  ===================
17-03-18 05:24:36.304 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.003063,
17-03-18 05:24:36.764 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:36.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:41.664 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.024884,
17-03-18 05:24:41.764 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:41.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:46.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:46.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:47.024 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.031682,
17-03-18 05:24:51.764 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:51.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:52.384 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.045313,
17-03-18 05:24:56.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:24:56.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1859, R2=1930, Total=3789. Warn if over 250 bubbles per interval.
17-03-18 05:24:57.744 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.008536,
17-03-18 05:24:58.804 -07 000000606 INF: WaitCommand(30000) end
17-03-18 05:24:58.804 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 22° ===================
17-03-18 05:24:58.804 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:24:58.804 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:24:58.804 -07 000000606 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:24:58.814 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:24:58.814 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:24:58.814 -07 000000461 INF: FPGA: Recv TEC2EN 
17-03-18 05:24:58.824 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:24:58.824 -07 000000610 INF: =================== Cycle #137, Flow Cell Temp 22° ===================
17-03-18 05:24:58.824 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:24:58.824 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:24:58.824 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:24:58.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:24:58.854 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:24:58.854 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:24:58.854 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:24:58.984 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:24:59.024 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:01.764 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 05:25:01.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1932, Total=3793. Warn if over 250 bubbles per interval.
17-03-18 05:25:02.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:02.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:02.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:02.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:03.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:03.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:03.084 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:25:03.084 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:25:03.104 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.985358,
17-03-18 05:25:03.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:03.244 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:25:03.244 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:25:03.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:03.404 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:25:03.404 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:25:03.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:25:03.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:25:03.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:03.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:04.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:04.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:25:04.024 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:25:05.244 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:25:05.244 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:25:05.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:25:05.264 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:25:05.264 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:25:05.264 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:25:05.414 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:25:05.434 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:25:05.434 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:25:05.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:25:05.504 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:25:05.504 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:25:05.604 -07 000000610 INF: =================== Cycle #137, Pumping Reagent USM (2) ===================
17-03-18 05:25:05.604 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:25:05.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:05.634 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:25:05.634 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:25:05.634 -07 000000610 INF: =================== Cycle #137, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:25:05.764 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:25:05.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:06.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:25:06.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:07.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:07.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:07.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:07.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:07.724 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:25:07.724 -07 000000610 INF: =================== Cycle #137, Pumping Reagent USM (2) ===================
17-03-18 05:25:07.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:07.884 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:25:07.884 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:25:08.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:08.044 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:25:08.044 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:25:08.044 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:25:08.174 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:25:08.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:08.464 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.971733,
17-03-18 05:25:08.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:08.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:08.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:25:08.664 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:25:09.884 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:25:09.884 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:25:09.884 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:25:09.904 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:25:09.904 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:25:09.904 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:25:10.054 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:25:10.074 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:25:10.074 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:25:10.124 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:25:10.144 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:25:10.144 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:25:10.244 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:25:10.244 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:25:10.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:10.274 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:25:10.274 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:25:10.274 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:25:10.404 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:25:10.444 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:11.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:11.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:11.344 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:25:11.344 -07 000000610 INF: =================== Cycle #137, Pumping Reagent PR2 (3) ===================
17-03-18 05:25:11.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:11.504 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:25:11.504 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:25:11.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:25:11.664 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:25:11.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:25:11.664 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:25:11.764 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:11.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:11.794 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:25:11.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:12.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:12.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:12.284 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:25:12.284 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:25:12.284 -07 000000479 INF: WaitCommand(10000) start
17-03-18 05:25:12.284 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:25:12.284 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:25:13.504 -07 000000424 INF: AsyncDelayTimer waited 1214ms
17-03-18 05:25:13.504 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-18 05:25:14.124 -07 000000424 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:25:14.124 -07 000000424 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:25:14.254 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:25:14.294 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:14.424 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.959467,
17-03-18 05:25:15.824 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:15.854 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:25:16.274 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 05:25:16.304 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:25:16.304 -07 000000424 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:25:16.304 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:25:16.304 -07 000000424 INF: ===================  ===================
17-03-18 05:25:16.764 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:16.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:19.784 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.989471,
17-03-18 05:25:21.764 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:21.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:22.294 -07 000000479 INF: WaitCommand(10000) end
17-03-18 05:25:22.294 -07 000000610 INF: =================== Cycle #137, Imaging ===================
17-03-18 05:25:22.294 -07 000000610 INF: Imaging Cycle 137: ScanTilesCommand Cycle 137 time start.
17-03-18 05:25:22.294 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:25:22.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:25:22.324 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:25:22.324 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:25:22.324 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:25:22.624 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:25:22.644 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:25:22.644 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:25:22.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:25:22.714 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:25:22.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:22.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:22.714 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:25:22.714 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:22.714 -07 000000606 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:25:22.714 -07 000000608 INF: FPGA: Recv EXLED1ON 
17-03-18 05:25:22.724 -07 000000606 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:22.724 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:25:22.724 -07 000000479 INF: FPGA: Recv EXLED1ADCR 23141
17-03-18 05:25:22.734 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:22.734 -07 000000606 INF: RedLED: Using Red data: Photodiode ADC 23141 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.7 mW
17-03-18 05:25:22.734 -07 000000606 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:25:22.734 -07 000000479 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:25:22.744 -07 000000606 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:22.744 -07 000000606 INF: RedLED: LED was on for 19 ms
17-03-18 05:25:22.744 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:25:22.744 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:25:22.744 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:22.744 -07 000000606 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:25:22.744 -07 000000608 INF: FPGA: Recv EXLED2ON 
17-03-18 05:25:22.754 -07 000000606 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:22.754 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:25:22.754 -07 000000608 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 05:25:22.764 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:22.764 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 05:25:22.764 -07 000000606 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:25:22.764 -07 000000608 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:25:22.774 -07 000000606 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:22.774 -07 000000606 INF: GreenLED: LED was on for 19 ms
17-03-18 05:25:22.774 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-18 05:25:22.774 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:25:22.774 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 05:25:22.784 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:22.784 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:25:23.284 -07 000000606 INF: FPGA: Recv EMOUT
17-03-18 05:25:23.284 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:25:23.284 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:25:23.284 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 05:25:23.294 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:23.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:23.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.37939453125, Z-Position -0.126574110425069. ------
17-03-18 05:25:23.294 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:23.294 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17842 mm
17-03-18 05:25:23.294 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:23.824 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:25:23.824 -07 000000461 INF: Y Motor: Moving to 59.9126 mm, started at 75.3794 mm, delta = -15.4668 mm
17-03-18 05:25:23.824 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:24.824 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:24.824 -07 000000625 INF: FPGA: Recv YRDPOS 154377
17-03-18 05:25:24.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 05:25:24.824 -07 000000461 INF: Y Motor: Encoder = 154377 = motor step 120607.0 = 75.3794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:24.824 -07 000000461 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:25:24.824 -07 000000461 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:25:24.824 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1520 ms to get response, and 1524 ms overall
17-03-18 05:25:24.824 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38976, sync = True, waitForSettling = False)
17-03-18 05:25:24.824 -07 000000625 INF: Z Motor: Moving to -0.178421 mm, started at -0.126574 mm, distance = -51.85 um
17-03-18 05:25:24.834 -07 000000461 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:25:24.844 -07 000000625 INF: FPGA: Xmit ZDACW 38976\n [Z Motor]
17-03-18 05:25:24.854 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:25.824 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:25:25.824 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:25.824 -07 000000625 INF: FPGA: 'ZDACW 38976' command took 0 ms to send, 970 ms to get response, and 998 ms overall
17-03-18 05:25:25.824 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 960 ms to get response, and 998 ms overall
17-03-18 05:25:25.844 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:25.844 -07 000000474 INF: FPGA: Recv ZDACR 38976
17-03-18 05:25:25.854 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:25:25.854 -07 000000625 INF: Z Motor: MoveAbsStepped took 1027 ms (did NOT wait for settling yet))
17-03-18 05:25:26.134 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.99219,
17-03-18 05:25:26.514 -07 000000474 INF: FPGA: Recv YMVTO 122702 24776
17-03-18 05:25:26.514 -07 000000461 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1694 ms overall
17-03-18 05:25:26.514 -07 000000461 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:25:26.514 -07 000000461 INF: Y Motor: To move from 75.379 to 59.913 (-15.467 mm) should take 24747 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:25:26.514 -07 000000461 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1694 ms, distance = 15.467 mm, average velocity = 9.130 mm/sec
17-03-18 05:25:26.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:29.364 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:29.364 -07 000000618 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:25:29.374 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:29.374 -07 000000461 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:29.404 -07 000000461 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:29.404 -07 000000461 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 05:25:29.404 -07 000000461 INF: Y Motor: Moved to 59.9097 after 5580 ms
17-03-18 05:25:29.404 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178421 mm (DAC = 38976)
17-03-18 05:25:29.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.404 -07 000000625 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:25:29.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:25:29.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.414 -07 000000606 INF: FPGA: Recv ZSGSRD 37062
17-03-18 05:25:29.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.424 -07 000000461 INF: FPGA: Recv ZSGSRD 37065
17-03-18 05:25:29.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.434 -07 000000606 INF: FPGA: Recv ZSGSRD 37059
17-03-18 05:25:29.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.444 -07 000000625 INF: FPGA: Recv ZSGSRD 37066
17-03-18 05:25:29.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.454 -07 000000606 INF: FPGA: Recv ZSGSRD 37060
17-03-18 05:25:29.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.464 -07 000000461 INF: FPGA: Recv ZSGSRD 37063
17-03-18 05:25:29.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.474 -07 000000461 INF: FPGA: Recv ZSGSRD 37069
17-03-18 05:25:29.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.484 -07 000000461 INF: FPGA: Recv ZSGSRD 37063
17-03-18 05:25:29.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:29.494 -07 000000461 INF: FPGA: Recv ZSGSRD 37064
17-03-18 05:25:29.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.504 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:29.504 -07 000000606 INF: FPGA: Recv ZPIEZORD 33322
17-03-18 05:25:29.514 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:29.514 -07 000000608 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.3 V.
17-03-18 05:25:29.514 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37064 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37064 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37059 (-177.5 uncal um), Max = 37071 (-177.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:25:29.514 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37064, posNoise = 7, negNoise = 5
17-03-18 05:25:29.514 -07 000000608 INF: Z Motor: After move to -0.178421, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:29.514 -07 000000608 INF: Z Motor: Settle wait time = 4582 ms, measure time = 106 ms (allowed 150 ms), total time = 4688 ms
17-03-18 05:25:29.514 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:29.564 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6263 ms
17-03-18 05:25:29.564 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:29.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:29.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:29.564 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:29.564 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:29.564 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:29.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:29.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:25:29.564 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:25:29.594 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:25:29.594 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:29.594 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:25:29.594 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:29.604 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:25:29.604 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 05:25:29.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:29.654 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:29.954 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:29.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:29.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:29.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 577158192, 0x0, 559484976) start.
17-03-18 05:25:29.994 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:29.994 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:29.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:25:30.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 577158192, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:25:30.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:30.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:25:30.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:25:30.194 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:30.194 -07 000000618 INF: Image SNR check: start
17-03-18 05:25:30.194 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:30.204 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:30.204 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:30.204 -07 000000618 INF: Image SNR check: pass  [peak (Max-Min)=133.19]
17-03-18 05:25:30.204 -07 000000618 INF: Autofocus start
17-03-18 05:25:30.204 -07 000000618 INF: MeasureProfile start
17-03-18 05:25:30.214 -07 000000618 INF: MeasureProfile done
17-03-18 05:25:30.214 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:25:30.224 -07 000000618 INF: Autofocus finished
17-03-18 05:25:30.404 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:30.404 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:25:30.404 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178430350833363. ----------
17-03-18 05:25:30.404 -07 000000610 INF: Cycle	137	Tile	1	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:30.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37508, sync = True, waitForSettling = True)
17-03-18 05:25:30.414 -07 000000610 INF: Z Motor: Moving to -0.171701 mm, started at -0.178430 mm, distance = 6.73 um
17-03-18 05:25:30.414 -07 000000610 INF: FPGA: Xmit ZDACW 37508\n [Z Motor]
17-03-18 05:25:30.414 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:25:30.424 -07 000000610 INF: FPGA: 'ZDACW 37508' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:25:30.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:30.424 -07 000000608 INF: FPGA: Recv ZDACR 37508
17-03-18 05:25:30.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36021
17-03-18 05:25:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.594 -07 000000461 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:25:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.604 -07 000000608 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:25:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.614 -07 000000606 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:25:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.624 -07 000000606 INF: FPGA: Recv ZSGSRD 36018
17-03-18 05:25:30.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.634 -07 000000461 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:25:30.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36014
17-03-18 05:25:30.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.654 -07 000000608 INF: FPGA: Recv ZSGSRD 36018
17-03-18 05:25:30.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.664 -07 000000618 INF: FPGA: Recv ZSGSRD 36021
17-03-18 05:25:30.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:30.674 -07 000000618 INF: FPGA: Recv ZSGSRD 36013
17-03-18 05:25:30.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:30.684 -07 000000608 INF: FPGA: Recv ZPIEZORD 31902
17-03-18 05:25:30.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:30.694 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.1 V.
17-03-18 05:25:30.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36018 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36013 (-170.8 uncal um), Max = 36023 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:25:30.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36018, posNoise = 5, negNoise = 5
17-03-18 05:25:30.694 -07 000000610 INF: Z Motor: After move to -0.171701, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:30.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:25:30.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:30.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:30.694 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:30.694 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:30.694 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:30.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:30.694 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:30.694 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:30.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:30.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:30.694 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:25:30.694 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:25:30.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:30.704 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:30.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:25:30.714 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:25:30.724 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:25:30.724 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:30.724 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:25:30.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:30.734 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:25:30.734 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 05:25:30.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37685 150\n [Camera]
17-03-18 05:25:30.934 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:25:31.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:31.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:31.374 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:31.384 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:31.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:31.384 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:31.384 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:31.384 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:25:31.384 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:31.384 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 05:25:31.504 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.994908,
17-03-18 05:25:31.564 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37685 823
17-03-18 05:25:31.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:25:31.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:31.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:31.784 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:25:31.784 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:25:31.784 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:31.784 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:25:31.784 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:25:31.784 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:31.784 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:31.784 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:25:31.794 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:25:31.804 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:25:31.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:31.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:31.934 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:32.044 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:32.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:32.044 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:32.044 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:25:32.044 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:32.054 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:32.054 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:25:32.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:25:32.124 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:32.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37685 150' command took 2 ms to send, 1371 ms to get response, and 1384 ms overall
17-03-18 05:25:32.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:32.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171710624933081. ------
17-03-18 05:25:32.124 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:32.434 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:25:32.434 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:25:32.434 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:32.444 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:32.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:25:32.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:25:32.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:32.444 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:32.444 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 05:25:32.454 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:25:32.454 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17794 mm
17-03-18 05:25:32.454 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:32.464 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:32.464 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 330 ms to get response, and 332 ms overall
17-03-18 05:25:32.464 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:32.464 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:25:32.464 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:25:32.474 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:33.114 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38871, sync = True, waitForSettling = False)
17-03-18 05:25:33.114 -07 000000455 INF: Z Motor: Moving to -0.177940 mm, started at -0.171711 mm, distance = -6.23 um
17-03-18 05:25:33.114 -07 000000455 INF: FPGA: Xmit ZDACW 38871\n [Z Motor]
17-03-18 05:25:33.644 -07 000000479 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:25:33.644 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:33.644 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:25:33.644 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1170 ms to get response, and 1179 ms overall
17-03-18 05:25:33.644 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1160 ms to get response, and 1175 ms overall
17-03-18 05:25:33.644 -07 000000424 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:33.644 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:33.644 -07 000000424 INF: Y Motor: Moving 1333 steps1
17-03-18 05:25:33.644 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:33.644 -07 000000455 INF: FPGA: 'ZDACW 38871' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 05:25:33.654 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:33.654 -07 000000618 INF: FPGA: Recv ZDACR 38871
17-03-18 05:25:33.664 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:25:33.664 -07 000000455 INF: Z Motor: MoveAbsStepped took 548 ms (did NOT wait for settling yet))
17-03-18 05:25:34.024 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:25:34.024 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 381 ms overall
17-03-18 05:25:34.064 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:34.064 -07 000000455 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:25:34.074 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:25:34.074 -07 000000424 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:34.074 -07 000000424 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:25:34.074 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.833 mm, average velocity = 2.186 mm/sec
17-03-18 05:25:35.024 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:35.024 -07 000000455 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:25:35.034 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.034 -07 000000424 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:35.064 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:35.064 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:25:35.064 -07 000000424 INF: Y Motor: Moved to 60.7324 after 2599 ms (table move)
17-03-18 05:25:35.064 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177940 mm (DAC = 38871)
17-03-18 05:25:35.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.074 -07 000000424 INF: FPGA: Recv ZSGSRD 36989
17-03-18 05:25:35.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:25:35.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.074 -07 000000455 INF: FPGA: Recv ZSGSRD 36989
17-03-18 05:25:35.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.084 -07 000000479 INF: FPGA: Recv ZSGSRD 36989
17-03-18 05:25:35.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.094 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.094 -07 000000479 INF: FPGA: Recv ZSGSRD 36992
17-03-18 05:25:35.104 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.104 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.104 -07 000000455 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:25:35.114 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.114 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.114 -07 000000479 INF: FPGA: Recv ZSGSRD 36985
17-03-18 05:25:35.124 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.124 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.124 -07 000000618 INF: FPGA: Recv ZSGSRD 36982
17-03-18 05:25:35.134 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.134 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.134 -07 000000618 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:25:35.144 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.144 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.144 -07 000000479 INF: FPGA: Recv ZSGSRD 36994
17-03-18 05:25:35.154 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.154 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:35.154 -07 000000455 INF: FPGA: Recv ZSGSRD 36994
17-03-18 05:25:35.164 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.164 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:35.164 -07 000000455 INF: FPGA: Recv ZPIEZORD 33214
17-03-18 05:25:35.174 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.174 -07 000000512 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V.
17-03-18 05:25:35.174 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36989 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36989 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36982 (-177.0 uncal um), Max = 36994 (-177.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:25:35.174 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36989, posNoise = 5, negNoise = 7
17-03-18 05:25:35.174 -07 000000512 INF: Z Motor: After move to -0.177940, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:35.174 -07 000000512 INF: Z Motor: Settle wait time = 1956 ms, measure time = 103 ms (allowed 150 ms), total time = 2059 ms
17-03-18 05:25:35.174 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:35.224 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2760 ms
17-03-18 05:25:35.224 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:35.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:35.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:35.224 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:35.224 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:35.224 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:35.224 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:35.224 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:35.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:35.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:25:35.234 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:35.244 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:25:35.244 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:25:35.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:35.294 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:35.594 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:35.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:35.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:35.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608709336, 0x0, 559484976) start.
17-03-18 05:25:35.634 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:35.634 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:35.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 05:25:35.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608709336, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:25:35.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:35.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:25:35.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:25:35.734 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:35.734 -07 000000455 INF: Autofocus start
17-03-18 05:25:35.734 -07 000000455 INF: MeasureProfile start
17-03-18 05:25:35.734 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:35.744 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:35.744 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:35.744 -07 000000455 INF: MeasureProfile done
17-03-18 05:25:35.744 -07 000000455 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:25:35.744 -07 000000455 INF: Autofocus finished
17-03-18 05:25:35.944 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:35.944 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:25:35.944 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177948534922731. ----------
17-03-18 05:25:35.944 -07 000000610 INF: Cycle	137	Tile	2	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:35.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37351, sync = True, waitForSettling = True)
17-03-18 05:25:35.954 -07 000000610 INF: Z Motor: Moving to -0.170982 mm, started at -0.177949 mm, distance = 6.97 um
17-03-18 05:25:35.954 -07 000000610 INF: FPGA: Xmit ZDACW 37351\n [Z Motor]
17-03-18 05:25:35.954 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:25:35.964 -07 000000610 INF: FPGA: 'ZDACW 37351' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:35.964 -07 000000424 INF: FPGA: Recv ZDACR 37351
17-03-18 05:25:35.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:35.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:36.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.124 -07 000000455 INF: FPGA: Recv ZSGSRD 35906
17-03-18 05:25:36.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:36.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.134 -07 000000424 INF: FPGA: Recv ZSGSRD 35905
17-03-18 05:25:36.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35905
17-03-18 05:25:36.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35911
17-03-18 05:25:36.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.164 -07 000000461 INF: FPGA: Recv ZSGSRD 35905
17-03-18 05:25:36.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.174 -07 000000424 INF: FPGA: Recv ZSGSRD 35902
17-03-18 05:25:36.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.184 -07 000000479 INF: FPGA: Recv ZSGSRD 35910
17-03-18 05:25:36.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.194 -07 000000461 INF: FPGA: Recv ZSGSRD 35909
17-03-18 05:25:36.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:25:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.204 -07 000000512 INF: FPGA: Recv ZSGSRD 35905
17-03-18 05:25:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:36.214 -07 000000455 INF: FPGA: Recv ZSGSRD 35900
17-03-18 05:25:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:36.224 -07 000000625 INF: FPGA: Recv ZPIEZORD 31753
17-03-18 05:25:36.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:36.234 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.2 V.
17-03-18 05:25:36.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35906 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35905 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35900 (-170.1 uncal um), Max = 35911 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:25:36.234 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35906, posNoise = 5, negNoise = 6
17-03-18 05:25:36.234 -07 000000610 INF: Z Motor: After move to -0.170982, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:36.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:25:36.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:36.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:36.234 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:36.234 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:36.234 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:36.234 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:36.234 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:36.234 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:36.234 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:36.234 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:36.234 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:25:36.234 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:36.244 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:36.244 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:36.244 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:25:36.244 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:36.254 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:25:36.254 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:25:36.254 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:25:36.254 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:25:36.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37528 150\n [Camera]
17-03-18 05:25:36.464 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:25:36.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:36.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:36.874 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.019446,
17-03-18 05:25:36.894 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:36.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:36.894 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:36.894 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:36.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:25:36.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:36.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:36.904 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:36.904 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:36.904 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:25:37.094 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37528 823
17-03-18 05:25:37.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:25:37.284 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:25:37.284 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:25:37.284 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:37.284 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:37.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:25:37.294 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:25:37.294 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:37.294 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:25:37.294 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:37.294 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:25:37.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:37.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:37.454 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:37.454 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:37.454 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:25:37.454 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:37.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:37.454 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:37.454 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:37.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:25:37.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:25:37.644 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:37.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37528 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-18 05:25:37.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:37.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.170991113173204. ------
17-03-18 05:25:37.654 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:37.654 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17779 mm
17-03-18 05:25:37.654 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:37.654 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:37.654 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:25:37.654 -07 000000618 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:25:37.664 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:37.664 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:37.674 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:37.834 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:25:37.834 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:25:37.834 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:37.834 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:37.834 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:25:37.844 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38838, sync = True, waitForSettling = False)
17-03-18 05:25:37.844 -07 000000479 INF: Z Motor: Moving to -0.177789 mm, started at -0.170991 mm, distance = -6.80 um
17-03-18 05:25:37.854 -07 000000479 INF: FPGA: Xmit ZDACW 38838\n [Z Motor]
17-03-18 05:25:37.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:25:37.944 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 491 ms.
17-03-18 05:25:37.944 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:37.954 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:37.954 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 05:25:37.964 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:25:37.964 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:25:37.964 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:37.964 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 296 ms to get response, and 311 ms overall
17-03-18 05:25:37.964 -07 000000618 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:37.964 -07 000000479 INF: FPGA: 'ZDACW 38838' command took 0 ms to send, 106 ms to get response, and 110 ms overall
17-03-18 05:25:37.964 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:37.964 -07 000000618 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:37.964 -07 000000618 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:25:37.964 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 286 ms to get response, and 306 ms overall
17-03-18 05:25:37.964 -07 000000474 INF: FPGA: Recv ZDACR 38838
17-03-18 05:25:37.974 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:25:37.974 -07 000000479 INF: Z Motor: MoveAbsStepped took 120 ms (did NOT wait for settling yet))
17-03-18 05:25:37.974 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:38.344 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:25:38.344 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 05:25:38.404 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:38.404 -07 000000474 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:25:38.414 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:38.414 -07 000000618 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:38.414 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:25:38.414 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-18 05:25:39.364 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:39.364 -07 000000625 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:25:39.374 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:39.374 -07 000000618 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:39.404 -07 000000618 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:39.404 -07 000000618 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:25:39.404 -07 000000618 INF: Y Motor: Moved to 61.5630 after 1746 ms (table move)
17-03-18 05:25:39.404 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177789 mm (DAC = 38838)
17-03-18 05:25:39.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.404 -07 000000474 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:25:39.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:25:39.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.414 -07 000000625 INF: FPGA: Recv ZSGSRD 36971
17-03-18 05:25:39.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.424 -07 000000608 INF: FPGA: Recv ZSGSRD 36973
17-03-18 05:25:39.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.434 -07 000000625 INF: FPGA: Recv ZSGSRD 36967
17-03-18 05:25:39.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.444 -07 000000606 INF: FPGA: Recv ZSGSRD 36964
17-03-18 05:25:39.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.454 -07 000000479 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:25:39.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.464 -07 000000474 INF: FPGA: Recv ZSGSRD 36963
17-03-18 05:25:39.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.474 -07 000000479 INF: FPGA: Recv ZSGSRD 36966
17-03-18 05:25:39.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.484 -07 000000606 INF: FPGA: Recv ZSGSRD 36969
17-03-18 05:25:39.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:39.494 -07 000000479 INF: FPGA: Recv ZSGSRD 36971
17-03-18 05:25:39.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.504 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:39.504 -07 000000606 INF: FPGA: Recv ZPIEZORD 33193
17-03-18 05:25:39.514 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:39.514 -07 000000512 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.4 V.
17-03-18 05:25:39.514 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36968 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36966 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36963 (-176.9 uncal um), Max = 36973 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:25:39.514 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36968, posNoise = 5, negNoise = 5
17-03-18 05:25:39.514 -07 000000512 INF: Z Motor: After move to -0.177789, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:39.514 -07 000000512 INF: Z Motor: Settle wait time = 1548 ms, measure time = 106 ms (allowed 150 ms), total time = 1654 ms
17-03-18 05:25:39.514 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:39.564 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1908 ms
17-03-18 05:25:39.564 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:39.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:39.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:39.564 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:39.564 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:39.564 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:39.564 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:39.564 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:39.564 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:39.574 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:39.574 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:39.574 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:25:39.584 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:25:39.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:39.634 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:39.934 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:39.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:39.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:39.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:25:39.974 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:39.974 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:39.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 05:25:40.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:25:40.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:40.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:25:40.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:25:40.174 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:40.174 -07 000000474 INF: Autofocus start
17-03-18 05:25:40.174 -07 000000474 INF: MeasureProfile start
17-03-18 05:25:40.184 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:40.184 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:25:40.184 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:40.184 -07 000000474 INF: MeasureProfile done
17-03-18 05:25:40.184 -07 000000474 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:25:40.184 -07 000000474 INF: Autofocus finished
17-03-18 05:25:40.384 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:40.384 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:25:40.384 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177813626467754. ----------
17-03-18 05:25:40.394 -07 000000610 INF: Cycle	137	Tile	3	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:40.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37371, sync = True, waitForSettling = True)
17-03-18 05:25:40.394 -07 000000610 INF: Z Motor: Moving to -0.171073 mm, started at -0.177814 mm, distance = 6.74 um
17-03-18 05:25:40.394 -07 000000610 INF: FPGA: Xmit ZDACW 37371\n [Z Motor]
17-03-18 05:25:40.394 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:25:40.404 -07 000000610 INF: FPGA: 'ZDACW 37371' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:40.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:40.404 -07 000000474 INF: FPGA: Recv ZDACR 37371
17-03-18 05:25:40.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:40.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35918
17-03-18 05:25:40.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:40.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.574 -07 000000618 INF: FPGA: Recv ZSGSRD 35919
17-03-18 05:25:40.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.584 -07 000000625 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:25:40.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.594 -07 000000625 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:25:40.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.604 -07 000000479 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:25:40.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.614 -07 000000625 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:25:40.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.624 -07 000000461 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:25:40.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.634 -07 000000618 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:25:40.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:25:40.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:40.654 -07 000000625 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:25:40.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:40.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:40.664 -07 000000606 INF: FPGA: Recv ZPIEZORD 31801
17-03-18 05:25:40.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:40.674 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.1 V.
17-03-18 05:25:40.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35921 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35921 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:25:40.674 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35921, posNoise = 5, negNoise = 5
17-03-18 05:25:40.674 -07 000000610 INF: Z Motor: After move to -0.171073, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:40.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:25:40.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:40.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:40.674 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:40.674 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:40.674 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:40.674 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:40.674 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:40.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:40.674 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:40.674 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:40.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:25:40.674 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:40.684 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:40.684 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:40.684 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:25:40.684 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:40.694 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:25:40.694 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:25:40.694 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:25:40.694 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:25:40.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37547 150\n [Camera]
17-03-18 05:25:40.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:25:41.334 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:41.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:41.334 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:41.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:41.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:41.344 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:41.344 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:41.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:25:41.344 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:41.344 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:25:41.534 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37547 823
17-03-18 05:25:41.684 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:25:41.734 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:25:41.734 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:25:41.734 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:41.744 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:41.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:25:41.744 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:25:41.744 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:25:41.744 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:41.744 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:41.754 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:25:41.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:41.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:41.894 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:41.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:41.894 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:41.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:41.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:41.894 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:41.904 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:41.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:25:41.904 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:41.904 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:25:42.084 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:25:42.084 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:42.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37547 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-18 05:25:42.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:42.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.17108747635533. ------
17-03-18 05:25:42.094 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:42.094 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17733 mm
17-03-18 05:25:42.094 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:42.094 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:42.094 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38738, sync = True, waitForSettling = False)
17-03-18 05:25:42.094 -07 000000479 INF: Z Motor: Moving to -0.177331 mm, started at -0.171087 mm, distance = -6.24 um
17-03-18 05:25:42.094 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:25:42.094 -07 000000455 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:25:42.104 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:42.104 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:42.104 -07 000000474 INF: FPGA: Recv YRDPOS 126082
17-03-18 05:25:42.114 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:25:42.114 -07 000000455 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:42.114 -07 000000479 INF: FPGA: Xmit ZDACW 38738\n [Z Motor]
17-03-18 05:25:42.114 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:25:42.114 -07 000000455 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:42.114 -07 000000455 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:25:42.124 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:42.124 -07 000000479 INF: FPGA: 'ZDACW 38738' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:25:42.134 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:42.144 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:42.144 -07 000000618 INF: FPGA: Recv ZDACR 38738
17-03-18 05:25:42.154 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:25:42.154 -07 000000479 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:25:42.244 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.011254,
17-03-18 05:25:42.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:25:42.294 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:25:42.294 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:42.294 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:25:42.294 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:25:42.294 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:42.304 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:42.304 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:25:42.304 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:25:42.314 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:25:42.324 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:42.324 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:25:42.504 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:25:42.504 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:25:42.554 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:42.564 -07 000000474 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:25:42.564 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:25:42.564 -07 000000455 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:42.564 -07 000000455 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:25:42.564 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 05:25:43.514 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:43.514 -07 000000608 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:25:43.524 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.524 -07 000000455 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:43.554 -07 000000455 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:43.554 -07 000000455 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:25:43.554 -07 000000455 INF: Y Motor: Moved to 62.3950 after 1452 ms (table move)
17-03-18 05:25:43.554 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177331 mm (DAC = 38738)
17-03-18 05:25:43.554 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.554 -07 000000479 INF: FPGA: Recv ZSGSRD 36901
17-03-18 05:25:43.564 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:25:43.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.564 -07 000000455 INF: FPGA: Recv ZSGSRD 36893
17-03-18 05:25:43.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.574 -07 000000618 INF: FPGA: Recv ZSGSRD 36892
17-03-18 05:25:43.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.584 -07 000000608 INF: FPGA: Recv ZSGSRD 36887
17-03-18 05:25:43.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.594 -07 000000455 INF: FPGA: Recv ZSGSRD 36897
17-03-18 05:25:43.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.604 -07 000000424 INF: FPGA: Recv ZSGSRD 36890
17-03-18 05:25:43.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.614 -07 000000608 INF: FPGA: Recv ZSGSRD 36900
17-03-18 05:25:43.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.624 -07 000000625 INF: FPGA: Recv ZSGSRD 36900
17-03-18 05:25:43.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.634 -07 000000608 INF: FPGA: Recv ZSGSRD 36892
17-03-18 05:25:43.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:43.644 -07 000000625 INF: FPGA: Recv ZSGSRD 36900
17-03-18 05:25:43.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.654 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:43.654 -07 000000608 INF: FPGA: Recv ZPIEZORD 33114
17-03-18 05:25:43.664 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:43.664 -07 000000606 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.4 V.
17-03-18 05:25:43.664 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36895 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36895 (-176.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36887 (-176.4 uncal um), Max = 36901 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:25:43.664 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36895, posNoise = 6, negNoise = 8
17-03-18 05:25:43.664 -07 000000606 INF: Z Motor: After move to -0.177331, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:43.664 -07 000000606 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:25:43.664 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:43.714 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:25:43.714 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:43.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:43.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:43.714 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:43.714 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:43.714 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:43.714 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:43.714 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:25:43.714 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:43.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:25:43.724 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:43.724 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:25:43.724 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:25:43.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:43.774 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:44.074 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:44.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:44.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:44.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 05:25:44.114 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:44.114 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:44.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:25:44.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:25:44.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:44.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:25:44.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:25:44.214 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:44.214 -07 000000424 INF: Autofocus start
17-03-18 05:25:44.214 -07 000000424 INF: MeasureProfile start
17-03-18 05:25:44.214 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:44.224 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:44.224 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:44.224 -07 000000424 INF: MeasureProfile done
17-03-18 05:25:44.224 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:25:44.224 -07 000000424 INF: Autofocus finished
17-03-18 05:25:44.424 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:44.424 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:25:44.424 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177344658981405. ----------
17-03-18 05:25:44.434 -07 000000610 INF: Cycle	137	Tile	4	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:44.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37235, sync = True, waitForSettling = True)
17-03-18 05:25:44.434 -07 000000610 INF: Z Motor: Moving to -0.170451 mm, started at -0.177345 mm, distance = 6.89 um
17-03-18 05:25:44.434 -07 000000610 INF: FPGA: Xmit ZDACW 37235\n [Z Motor]
17-03-18 05:25:44.434 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:25:44.444 -07 000000610 INF: FPGA: 'ZDACW 37235' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:25:44.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:44.444 -07 000000618 INF: FPGA: Recv ZDACR 37235
17-03-18 05:25:44.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.604 -07 000000606 INF: FPGA: Recv ZSGSRD 35820
17-03-18 05:25:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.614 -07 000000606 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:25:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:25:44.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.624 -07 000000474 INF: FPGA: Recv ZSGSRD 35826
17-03-18 05:25:44.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.634 -07 000000608 INF: FPGA: Recv ZSGSRD 35819
17-03-18 05:25:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35822
17-03-18 05:25:44.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.654 -07 000000608 INF: FPGA: Recv ZSGSRD 35822
17-03-18 05:25:44.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.664 -07 000000618 INF: FPGA: Recv ZSGSRD 35822
17-03-18 05:25:44.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.674 -07 000000618 INF: FPGA: Recv ZSGSRD 35821
17-03-18 05:25:44.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.684 -07 000000606 INF: FPGA: Recv ZSGSRD 35824
17-03-18 05:25:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:44.694 -07 000000474 INF: FPGA: Recv ZSGSRD 35823
17-03-18 05:25:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:44.704 -07 000000608 INF: FPGA: Recv ZPIEZORD 31664
17-03-18 05:25:44.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:44.714 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.2 V.
17-03-18 05:25:44.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35823 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35819 (-169.6 uncal um), Max = 35831 (-169.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:25:44.714 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35823, posNoise = 8, negNoise = 4
17-03-18 05:25:44.714 -07 000000610 INF: Z Motor: After move to -0.170451, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:44.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:25:44.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:44.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:44.714 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:44.714 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:44.714 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:44.714 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:44.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:44.714 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:44.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:25:44.714 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:44.714 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:25:44.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:44.714 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:44.714 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:44.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:25:44.714 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:44.724 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:25:44.724 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:25:44.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:25:44.724 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:25:44.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37412 150\n [Camera]
17-03-18 05:25:44.934 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:25:45.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:45.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:45.374 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:45.374 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:45.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1166128512, 0x0, 391868352) start.
17-03-18 05:25:45.374 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:45.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:45.374 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:45.374 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:45.374 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:25:45.564 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37412 823
17-03-18 05:25:45.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:25:45.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:25:45.764 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:25:45.764 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:45.764 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1166128512, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:25:45.764 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:25:45.764 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:45.764 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:45.764 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:45.764 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:25:45.774 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:25:45.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:45.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:45.924 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:45.924 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:45.924 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:25:45.924 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:45.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:45.924 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:45.924 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:45.924 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:25:46.114 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:25:46.114 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:46.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37412 150' command took 2 ms to send, 1376 ms to get response, and 1384 ms overall
17-03-18 05:25:46.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:46.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170457903565438. ------
17-03-18 05:25:46.234 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17678 mm
17-03-18 05:25:46.234 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:46.234 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:46.244 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:25:46.244 -07 000000474 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:25:46.244 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:46.244 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38617, sync = True, waitForSettling = False)
17-03-18 05:25:46.244 -07 000000625 INF: Z Motor: Moving to -0.176777 mm, started at -0.170458 mm, distance = -6.32 um
17-03-18 05:25:46.244 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:46.244 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:25:46.244 -07 000000479 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:25:46.254 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:46.254 -07 000000474 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:46.254 -07 000000474 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:46.254 -07 000000474 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:25:46.254 -07 000000625 INF: FPGA: Xmit ZDACW 38617\n [Z Motor]
17-03-18 05:25:46.254 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:25:46.264 -07 000000625 INF: FPGA: 'ZDACW 38617' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:25:46.264 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:46.274 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:46.284 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:46.284 -07 000000455 INF: FPGA: Recv ZDACR 38617
17-03-18 05:25:46.294 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:25:46.294 -07 000000625 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:25:46.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:25:46.324 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:25:46.324 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:46.324 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:25:46.324 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:25:46.324 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:46.324 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:46.334 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:25:46.334 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:25:46.334 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:25:46.464 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:46.464 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:25:46.654 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:25:46.654 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 05:25:46.704 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:46.704 -07 000000618 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:25:46.714 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:46.714 -07 000000474 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:46.714 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:25:46.714 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-18 05:25:46.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:46.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:47.614 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.004458,
17-03-18 05:25:47.664 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:47.664 -07 000000512 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:25:47.674 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:47.674 -07 000000474 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:47.704 -07 000000474 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:47.704 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:25:47.704 -07 000000474 INF: Y Motor: Moved to 63.2227 after 1460 ms (table move)
17-03-18 05:25:47.704 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176777 mm (DAC = 38617)
17-03-18 05:25:47.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.704 -07 000000569 INF: FPGA: Recv ZSGSRD 36807
17-03-18 05:25:47.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:25:47.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.714 -07 000000512 INF: FPGA: Recv ZSGSRD 36813
17-03-18 05:25:47.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.724 -07 000000512 INF: FPGA: Recv ZSGSRD 36809
17-03-18 05:25:47.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.734 -07 000000569 INF: FPGA: Recv ZSGSRD 36805
17-03-18 05:25:47.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:47.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.744 -07 000000569 INF: FPGA: Recv ZSGSRD 36807
17-03-18 05:25:47.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.754 -07 000000569 INF: FPGA: Recv ZSGSRD 36812
17-03-18 05:25:47.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.764 -07 000000512 INF: FPGA: Recv ZSGSRD 36803
17-03-18 05:25:47.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.774 -07 000000512 INF: FPGA: Recv ZSGSRD 36805
17-03-18 05:25:47.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.784 -07 000000474 INF: FPGA: Recv ZSGSRD 36807
17-03-18 05:25:47.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:47.794 -07 000000512 INF: FPGA: Recv ZSGSRD 36806
17-03-18 05:25:47.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.804 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:47.804 -07 000000608 INF: FPGA: Recv ZPIEZORD 32980
17-03-18 05:25:47.814 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:47.814 -07 000000424 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.5 V.
17-03-18 05:25:47.814 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36807 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36807 (-175.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36803 (-175.9 uncal um), Max = 36813 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:25:47.814 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36807, posNoise = 6, negNoise = 4
17-03-18 05:25:47.814 -07 000000424 INF: Z Motor: After move to -0.176777, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:47.814 -07 000000424 INF: Z Motor: Settle wait time = 1463 ms, measure time = 106 ms (allowed 150 ms), total time = 1569 ms
17-03-18 05:25:47.814 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:47.864 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:25:47.864 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:47.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:47.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:47.864 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:47.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:47.864 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:47.864 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:47.874 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:47.874 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:47.874 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:25:47.874 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:47.884 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:25:47.884 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:25:47.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:47.924 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:48.224 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:48.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:48.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:48.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:25:48.264 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:48.264 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:48.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:25:48.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:25:48.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:48.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:25:48.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:25:48.464 -07 000000479 INF: Autofocus start
17-03-18 05:25:48.464 -07 000000479 INF: MeasureProfile start
17-03-18 05:25:48.464 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:48.464 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:48.474 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:48.474 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:48.474 -07 000000479 INF: MeasureProfile done
17-03-18 05:25:48.474 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:25:48.474 -07 000000479 INF: Autofocus finished
17-03-18 05:25:48.674 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:48.674 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:25:48.674 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.17677932831293. ----------
17-03-18 05:25:48.674 -07 000000610 INF: Cycle	137	Tile	5	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:48.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37150, sync = True, waitForSettling = True)
17-03-18 05:25:48.684 -07 000000610 INF: Z Motor: Moving to -0.170062 mm, started at -0.176779 mm, distance = 6.72 um
17-03-18 05:25:48.684 -07 000000610 INF: FPGA: Xmit ZDACW 37150\n [Z Motor]
17-03-18 05:25:48.684 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:25:48.694 -07 000000610 INF: FPGA: 'ZDACW 37150' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:25:48.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:48.694 -07 000000608 INF: FPGA: Recv ZDACR 37150
17-03-18 05:25:48.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.854 -07 000000474 INF: FPGA: Recv ZSGSRD 35760
17-03-18 05:25:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.864 -07 000000479 INF: FPGA: Recv ZSGSRD 35761
17-03-18 05:25:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.874 -07 000000625 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:25:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.884 -07 000000625 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:25:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.894 -07 000000474 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:25:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.904 -07 000000424 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:25:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.914 -07 000000479 INF: FPGA: Recv ZSGSRD 35759
17-03-18 05:25:48.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.924 -07 000000479 INF: FPGA: Recv ZSGSRD 35763
17-03-18 05:25:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.934 -07 000000479 INF: FPGA: Recv ZSGSRD 35761
17-03-18 05:25:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:48.944 -07 000000625 INF: FPGA: Recv ZSGSRD 35762
17-03-18 05:25:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:48.954 -07 000000424 INF: FPGA: Recv ZPIEZORD 31567
17-03-18 05:25:48.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:48.964 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.3 V.
17-03-18 05:25:48.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35762 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35762 (-169.2 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35759 (-169.2 uncal um), Max = 35763 (-169.2 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:25:48.964 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35762, posNoise = 1, negNoise = 3
17-03-18 05:25:48.964 -07 000000610 INF: Z Motor: After move to -0.170062, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:48.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:25:48.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:48.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:48.964 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:48.964 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:48.964 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:48.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:48.964 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:48.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:48.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:48.964 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:48.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:25:48.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:48.974 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:25:48.974 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:48.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:25:48.974 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:48.974 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:25:48.974 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:25:48.984 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:25:48.984 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:25:48.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37326 150\n [Camera]
17-03-18 05:25:49.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:25:49.614 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:49.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:49.624 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:49.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:49.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:49.624 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:49.624 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:49.624 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:25:49.634 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:49.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:25:49.814 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37326 823
17-03-18 05:25:49.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:25:50.024 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:25:50.024 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:25:50.024 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:50.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:25:50.024 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:25:50.024 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:50.024 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:25:50.024 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:25:50.024 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:25:50.034 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:25:50.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:50.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:50.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:50.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:50.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:50.174 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:50.184 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:50.184 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:25:50.184 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:50.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:25:50.364 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:25:50.364 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:50.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37326 150' command took 2 ms to send, 1375 ms to get response, and 1383 ms overall
17-03-18 05:25:50.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:50.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.17006602662479. ------
17-03-18 05:25:50.374 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:50.374 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17643 mm
17-03-18 05:25:50.374 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:50.374 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38541, sync = True, waitForSettling = False)
17-03-18 05:25:50.374 -07 000000608 INF: Z Motor: Moving to -0.176429 mm, started at -0.170066 mm, distance = -6.36 um
17-03-18 05:25:50.374 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:50.374 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:25:50.374 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:25:50.494 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 05:25:50.494 -07 000000608 INF: FPGA: Xmit ZDACW 38541\n [Z Motor]
17-03-18 05:25:50.494 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:25:50.504 -07 000000608 INF: FPGA: 'ZDACW 38541' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 05:25:50.504 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:50.504 -07 000000606 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:25:50.514 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:50.514 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 05:25:50.514 -07 000000424 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:50.514 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:50.514 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:25:50.524 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:50.524 -07 000000618 INF: FPGA: Recv ZDACR 38541
17-03-18 05:25:50.534 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:50.534 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:25:50.534 -07 000000608 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-18 05:25:50.564 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:25:50.564 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:25:50.564 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:50.564 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:50.574 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:25:50.574 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:25:50.574 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:50.574 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:50.574 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:25:50.574 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:25:50.714 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:50.714 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-18 05:25:50.904 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:25:50.904 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:25:50.954 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:50.964 -07 000000606 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:25:50.964 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:25:50.964 -07 000000424 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:50.964 -07 000000424 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:25:50.964 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 05:25:51.764 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:51.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:51.914 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:51.914 -07 000000625 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:25:51.924 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:51.924 -07 000000424 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:51.954 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:51.954 -07 000000424 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:25:51.954 -07 000000424 INF: Y Motor: Moved to 64.0562 after 1576 ms (table move)
17-03-18 05:25:51.954 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176429 mm (DAC = 38541)
17-03-18 05:25:51.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:51.954 -07 000000569 INF: FPGA: Recv ZSGSRD 36762
17-03-18 05:25:51.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:51.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:51.964 -07 000000569 INF: FPGA: Recv ZSGSRD 36752
17-03-18 05:25:51.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:51.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:51.974 -07 000000569 INF: FPGA: Recv ZSGSRD 36756
17-03-18 05:25:51.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:51.984 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:51.984 -07 000000569 INF: FPGA: Recv ZSGSRD 36754
17-03-18 05:25:51.994 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:51.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:51.994 -07 000000569 INF: FPGA: Recv ZSGSRD 36752
17-03-18 05:25:52.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:52.004 -07 000000569 INF: FPGA: Recv ZSGSRD 36751
17-03-18 05:25:52.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:52.014 -07 000000455 INF: FPGA: Recv ZSGSRD 36750
17-03-18 05:25:52.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:52.024 -07 000000569 INF: FPGA: Recv ZSGSRD 36760
17-03-18 05:25:52.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:52.034 -07 000000569 INF: FPGA: Recv ZSGSRD 36754
17-03-18 05:25:52.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:52.044 -07 000000569 INF: FPGA: Recv ZSGSRD 36758
17-03-18 05:25:52.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.054 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:52.054 -07 000000606 INF: FPGA: Recv ZPIEZORD 32929
17-03-18 05:25:52.064 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:52.064 -07 000000474 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.5 V.
17-03-18 05:25:52.064 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36755 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36754 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36750 (-175.5 uncal um), Max = 36762 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:25:52.064 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36755, posNoise = 7, negNoise = 5
17-03-18 05:25:52.064 -07 000000474 INF: Z Motor: After move to -0.176429, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:52.064 -07 000000474 INF: Z Motor: Settle wait time = 1581 ms, measure time = 106 ms (allowed 150 ms), total time = 1687 ms
17-03-18 05:25:52.064 -07 000000474 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:52.114 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 05:25:52.114 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:52.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:52.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:52.114 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:52.114 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:52.114 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:52.114 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:52.114 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:52.114 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:52.124 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:25:52.124 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:52.134 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:25:52.134 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:25:52.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:52.184 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:52.484 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:52.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:52.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:52.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:25:52.524 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:52.524 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:52.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:25:52.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:25:52.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:52.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:25:52.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:25:52.624 -07 000000618 INF: Autofocus start
17-03-18 05:25:52.624 -07 000000618 INF: MeasureProfile start
17-03-18 05:25:52.624 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:52.624 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:52.634 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:52.634 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:52.634 -07 000000618 INF: MeasureProfile done
17-03-18 05:25:52.634 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:25:52.634 -07 000000618 INF: Autofocus finished
17-03-18 05:25:52.834 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:52.834 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:25:52.844 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176445269281559. ----------
17-03-18 05:25:52.844 -07 000000610 INF: Cycle	137	Tile	6	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:52.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37038, sync = True, waitForSettling = True)
17-03-18 05:25:52.844 -07 000000610 INF: Z Motor: Moving to -0.169549 mm, started at -0.176445 mm, distance = 6.90 um
17-03-18 05:25:52.844 -07 000000610 INF: FPGA: Xmit ZDACW 37038\n [Z Motor]
17-03-18 05:25:52.854 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:25:52.854 -07 000000610 INF: FPGA: 'ZDACW 37038' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:25:52.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:52.854 -07 000000625 INF: FPGA: Recv ZDACR 37038
17-03-18 05:25:52.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:25:52.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:52.984 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.988112,
17-03-18 05:25:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.014 -07 000000424 INF: FPGA: Recv ZSGSRD 35679
17-03-18 05:25:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.024 -07 000000606 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:25:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.044 -07 000000606 INF: FPGA: Recv ZSGSRD 35684
17-03-18 05:25:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:25:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.054 -07 000000618 INF: FPGA: Recv ZSGSRD 35682
17-03-18 05:25:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.064 -07 000000606 INF: FPGA: Recv ZSGSRD 35684
17-03-18 05:25:53.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.074 -07 000000424 INF: FPGA: Recv ZSGSRD 35681
17-03-18 05:25:53.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.084 -07 000000606 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:25:53.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.094 -07 000000479 INF: FPGA: Recv ZSGSRD 35681
17-03-18 05:25:53.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.104 -07 000000479 INF: FPGA: Recv ZSGSRD 35677
17-03-18 05:25:53.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:53.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35686
17-03-18 05:25:53.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:53.124 -07 000000625 INF: FPGA: Recv ZPIEZORD 31501
17-03-18 05:25:53.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:53.134 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.2 V.
17-03-18 05:25:53.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35682 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35677 (-168.6 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:25:53.134 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35682, posNoise = 4, negNoise = 5
17-03-18 05:25:53.134 -07 000000610 INF: Z Motor: After move to -0.169549, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:53.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:25:53.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:53.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:53.134 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:53.134 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:53.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:53.134 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:53.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:53.134 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:53.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:25:53.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:53.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:53.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:53.144 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:25:53.144 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:53.144 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:53.144 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:53.154 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:25:53.154 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:25:53.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:25:53.154 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:25:53.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37214 150\n [Camera]
17-03-18 05:25:53.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:25:53.794 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:53.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:53.794 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:53.794 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:53.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:53.794 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:53.794 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:53.794 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:25:53.804 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:53.804 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:25:53.984 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37214 826
17-03-18 05:25:54.134 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:25:54.174 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:25:54.184 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:25:54.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:54.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:25:54.184 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:25:54.184 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:54.184 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:25:54.184 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:25:54.184 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:25:54.194 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:25:54.344 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:54.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:54.344 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:54.344 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:54.344 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:25:54.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:54.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:54.344 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:54.344 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:54.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:25:54.534 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:25:54.534 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:54.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37214 150' command took 2 ms to send, 1377 ms to get response, and 1384 ms overall
17-03-18 05:25:54.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:54.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169552089653449. ------
17-03-18 05:25:54.544 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:54.544 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17591 mm
17-03-18 05:25:54.544 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:54.544 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:54.544 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:25:54.544 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:25:54.544 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38428, sync = True, waitForSettling = False)
17-03-18 05:25:54.544 -07 000000474 INF: Z Motor: Moving to -0.175912 mm, started at -0.169552 mm, distance = -6.36 um
17-03-18 05:25:54.554 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:54.554 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:54.554 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:25:54.564 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:25:54.564 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:54.564 -07 000000424 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:54.564 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:54.564 -07 000000424 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:25:54.574 -07 000000474 INF: FPGA: Xmit ZDACW 38428\n [Z Motor]
17-03-18 05:25:54.574 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:25:54.584 -07 000000474 INF: FPGA: 'ZDACW 38428' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:25:54.584 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:54.594 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:54.594 -07 000000461 INF: FPGA: Recv ZDACR 38428
17-03-18 05:25:54.604 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:25:54.604 -07 000000474 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:25:54.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:25:54.744 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:25:54.744 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:54.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:25:54.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:25:54.754 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:54.754 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:54.754 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:25:54.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:54.764 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:25:54.764 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:54.764 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:25:54.964 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:25:54.964 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 402 ms overall
17-03-18 05:25:55.014 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:55.014 -07 000000569 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:25:55.024 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:25:55.024 -07 000000424 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:55.024 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:25:55.024 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.836 mm, average velocity = 2.081 mm/sec
17-03-18 05:25:55.974 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:55.974 -07 000000606 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:25:55.984 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:55.984 -07 000000424 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:56.014 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:25:56.014 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:25:56.014 -07 000000424 INF: Y Motor: Moved to 64.8784 after 1465 ms (table move)
17-03-18 05:25:56.014 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175912 mm (DAC = 38428)
17-03-18 05:25:56.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.024 -07 000000424 INF: FPGA: Recv ZSGSRD 36679
17-03-18 05:25:56.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:25:56.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.024 -07 000000606 INF: FPGA: Recv ZSGSRD 36668
17-03-18 05:25:56.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.034 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.034 -07 000000424 INF: FPGA: Recv ZSGSRD 36670
17-03-18 05:25:56.044 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.044 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.044 -07 000000606 INF: FPGA: Recv ZSGSRD 36671
17-03-18 05:25:56.054 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.054 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.054 -07 000000606 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:25:56.064 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.064 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.064 -07 000000424 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:25:56.074 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.074 -07 000000424 INF: FPGA: Recv ZSGSRD 36676
17-03-18 05:25:56.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.084 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36665
17-03-18 05:25:56.094 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.094 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.094 -07 000000606 INF: FPGA: Recv ZSGSRD 36668
17-03-18 05:25:56.104 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.104 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:56.104 -07 000000455 INF: FPGA: Recv ZSGSRD 36669
17-03-18 05:25:56.114 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.114 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:56.114 -07 000000512 INF: FPGA: Recv ZPIEZORD 32836
17-03-18 05:25:56.124 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.124 -07 000000479 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.5 V.
17-03-18 05:25:56.124 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36671 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36665 (-175.0 uncal um), Max = 36679 (-175.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:25:56.124 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36671, posNoise = 8, negNoise = 6
17-03-18 05:25:56.124 -07 000000479 INF: Z Motor: After move to -0.175912, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:56.124 -07 000000479 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:25:56.124 -07 000000479 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:25:56.174 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:25:56.174 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:25:56.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:56.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:56.174 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:56.174 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:56.174 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:25:56.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:56.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:25:56.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:25:56.184 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:25:56.184 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:25:56.184 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:25:56.184 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:25:56.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:25:56.234 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:25:56.534 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:25:56.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:25:56.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:25:56.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-18 05:25:56.574 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:25:56.574 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:25:56.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:25:56.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:25:56.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:56.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:25:56.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:25:56.674 -07 000000569 INF: Autofocus start
17-03-18 05:25:56.674 -07 000000569 INF: MeasureProfile start
17-03-18 05:25:56.674 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:56.674 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:56.684 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:25:56.684 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:25:56.684 -07 000000569 INF: MeasureProfile done
17-03-18 05:25:56.684 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:25:56.684 -07 000000569 INF: Autofocus finished
17-03-18 05:25:56.764 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:25:56.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:25:56.884 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:25:56.884 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:25:56.894 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175905635461651. ----------
17-03-18 05:25:56.894 -07 000000610 INF: Cycle	137	Tile	7	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:25:56.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36943, sync = True, waitForSettling = True)
17-03-18 05:25:56.894 -07 000000610 INF: Z Motor: Moving to -0.169114 mm, started at -0.175906 mm, distance = 6.79 um
17-03-18 05:25:56.894 -07 000000610 INF: FPGA: Xmit ZDACW 36943\n [Z Motor]
17-03-18 05:25:56.894 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:25:56.904 -07 000000610 INF: FPGA: 'ZDACW 36943' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:56.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:56.904 -07 000000455 INF: FPGA: Recv ZDACR 36943
17-03-18 05:25:56.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:56.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:25:57.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.064 -07 000000424 INF: FPGA: Recv ZSGSRD 35618
17-03-18 05:25:57.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:57.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.074 -07 000000512 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:25:57.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.084 -07 000000569 INF: FPGA: Recv ZSGSRD 35607
17-03-18 05:25:57.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:25:57.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.104 -07 000000569 INF: FPGA: Recv ZSGSRD 35619
17-03-18 05:25:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35617
17-03-18 05:25:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.124 -07 000000569 INF: FPGA: Recv ZSGSRD 35611
17-03-18 05:25:57.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.134 -07 000000512 INF: FPGA: Recv ZSGSRD 35616
17-03-18 05:25:57.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.144 -07 000000618 INF: FPGA: Recv ZSGSRD 35610
17-03-18 05:25:57.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:25:57.154 -07 000000569 INF: FPGA: Recv ZSGSRD 35619
17-03-18 05:25:57.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:25:57.164 -07 000000455 INF: FPGA: Recv ZPIEZORD 31415
17-03-18 05:25:57.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:25:57.174 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V.
17-03-18 05:25:57.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35614 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35615 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35607 (-168.2 uncal um), Max = 35619 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:25:57.174 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35614, posNoise = 5, negNoise = 7
17-03-18 05:25:57.174 -07 000000610 INF: Z Motor: After move to -0.169114, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:25:57.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:25:57.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:25:57.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:25:57.174 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:25:57.174 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:25:57.174 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:25:57.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:25:57.174 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:25:57.174 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:25:57.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:25:57.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:25:57.174 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:25:57.174 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:25:57.184 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:25:57.184 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:25:57.184 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:25:57.184 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:25:57.194 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:25:57.194 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:25:57.194 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:25:57.194 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:25:57.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37120 150\n [Camera]
17-03-18 05:25:57.394 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:25:57.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:25:57.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:25:57.834 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:57.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:57.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:25:57.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:25:57.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:25:57.834 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:57.834 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:57.834 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:25:58.024 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37120 823
17-03-18 05:25:58.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:25:58.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:25:58.214 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:25:58.214 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:58.214 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:58.224 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:25:58.224 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:25:58.224 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:25:58.224 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:58.224 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:58.224 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:25:58.364 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.996267,
17-03-18 05:25:58.384 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:25:58.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:25:58.384 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:25:58.384 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:25:58.384 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:25:58.394 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:25:58.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:25:58.394 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:25:58.394 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:25:58.394 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:25:58.574 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:25:58.574 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:25:58.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37120 150' command took 2 ms to send, 1377 ms to get response, and 1384 ms overall
17-03-18 05:25:58.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:25:58.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.16911524322781. ------
17-03-18 05:25:58.704 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17572 mm
17-03-18 05:25:58.704 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:25:58.704 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:25:58.704 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:25:58.704 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38387, sync = True, waitForSettling = False)
17-03-18 05:25:58.704 -07 000000569 INF: Z Motor: Moving to -0.175724 mm, started at -0.169115 mm, distance = -6.61 um
17-03-18 05:25:58.704 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:25:58.714 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:25:58.714 -07 000000569 INF: FPGA: Xmit ZDACW 38387\n [Z Motor]
17-03-18 05:25:58.714 -07 000000625 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 05:25:58.714 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:25:58.724 -07 000000569 INF: FPGA: 'ZDACW 38387' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:25:58.724 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:58.724 -07 000000461 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:25:58.734 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:25:58.734 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:25:58.734 -07 000000625 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:58.734 -07 000000625 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:25:58.734 -07 000000625 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:25:58.744 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:25:58.744 -07 000000606 INF: FPGA: Recv ZDACR 38387
17-03-18 05:25:58.754 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:25:58.754 -07 000000569 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:25:58.754 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:25:58.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:25:58.794 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:25:58.794 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:58.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:25:58.794 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:25:58.794 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:25:58.794 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:25:58.804 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:25:58.804 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:25:58.804 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:25:58.934 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:25:58.934 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:25:59.124 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:25:59.124 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 05:25:59.174 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:25:59.184 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:25:59.184 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:25:59.184 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:25:59.184 -07 000000625 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:25:59.184 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 05:26:00.134 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:00.134 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:26:00.144 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:00.144 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:00.174 -07 000000625 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:00.174 -07 000000625 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:00.174 -07 000000625 INF: Y Motor: Moved to 65.7134 after 1466 ms (table move)
17-03-18 05:26:00.184 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175724 mm (DAC = 38387)
17-03-18 05:26:00.184 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.184 -07 000000474 INF: FPGA: Recv ZSGSRD 36634
17-03-18 05:26:00.194 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:00.194 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.194 -07 000000606 INF: FPGA: Recv ZSGSRD 36641
17-03-18 05:26:00.204 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.204 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.204 -07 000000474 INF: FPGA: Recv ZSGSRD 36636
17-03-18 05:26:00.214 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.214 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36643
17-03-18 05:26:00.224 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.224 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.224 -07 000000474 INF: FPGA: Recv ZSGSRD 36644
17-03-18 05:26:00.234 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.234 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.234 -07 000000474 INF: FPGA: Recv ZSGSRD 36648
17-03-18 05:26:00.244 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.244 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36648
17-03-18 05:26:00.254 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.254 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.254 -07 000000455 INF: FPGA: Recv ZSGSRD 36646
17-03-18 05:26:00.264 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.264 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.264 -07 000000474 INF: FPGA: Recv ZSGSRD 36646
17-03-18 05:26:00.274 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.274 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:00.274 -07 000000455 INF: FPGA: Recv ZSGSRD 36643
17-03-18 05:26:00.284 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.284 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:00.284 -07 000000606 INF: FPGA: Recv ZPIEZORD 32773
17-03-18 05:26:00.294 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:00.294 -07 000000479 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.6 V.
17-03-18 05:26:00.294 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36643 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36644 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36634 (-174.8 uncal um), Max = 36648 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:26:00.294 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36643, posNoise = 5, negNoise = 9
17-03-18 05:26:00.294 -07 000000479 INF: Z Motor: After move to -0.175724, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:00.294 -07 000000479 INF: Z Motor: Settle wait time = 1471 ms, measure time = 109 ms (allowed 150 ms), total time = 1580 ms
17-03-18 05:26:00.294 -07 000000479 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:00.344 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 05:26:00.344 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:00.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:00.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:00.344 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:00.344 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:00.344 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:00.344 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:00.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:00.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:00.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:26:00.354 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:00.364 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:26:00.364 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:26:00.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:00.414 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:00.714 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:00.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:00.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:00.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:26:00.744 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:00.754 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:00.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:26:00.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:26:00.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:00.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:00.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:26:00.854 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:00.854 -07 000000455 INF: Autofocus start
17-03-18 05:26:00.854 -07 000000455 INF: MeasureProfile start
17-03-18 05:26:00.864 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:00.864 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:00.864 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:00.864 -07 000000455 INF: MeasureProfile done
17-03-18 05:26:00.874 -07 000000455 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:26:00.874 -07 000000455 INF: Autofocus finished
17-03-18 05:26:01.064 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:01.064 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:01.064 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175725757521682. ----------
17-03-18 05:26:01.074 -07 000000610 INF: Cycle	137	Tile	8	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:01.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36938, sync = True, waitForSettling = True)
17-03-18 05:26:01.074 -07 000000610 INF: Z Motor: Moving to -0.169091 mm, started at -0.175726 mm, distance = 6.63 um
17-03-18 05:26:01.074 -07 000000610 INF: FPGA: Xmit ZDACW 36938\n [Z Motor]
17-03-18 05:26:01.074 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:26:01.084 -07 000000610 INF: FPGA: 'ZDACW 36938' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:01.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:01.084 -07 000000479 INF: FPGA: Recv ZDACR 36938
17-03-18 05:26:01.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:01.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.244 -07 000000474 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:26:01.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:26:01.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.264 -07 000000474 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:26:01.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.274 -07 000000461 INF: FPGA: Recv ZSGSRD 35606
17-03-18 05:26:01.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.284 -07 000000474 INF: FPGA: Recv ZSGSRD 35616
17-03-18 05:26:01.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.294 -07 000000455 INF: FPGA: Recv ZSGSRD 35617
17-03-18 05:26:01.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.304 -07 000000479 INF: FPGA: Recv ZSGSRD 35606
17-03-18 05:26:01.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.314 -07 000000474 INF: FPGA: Recv ZSGSRD 35609
17-03-18 05:26:01.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.324 -07 000000479 INF: FPGA: Recv ZSGSRD 35608
17-03-18 05:26:01.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:01.334 -07 000000474 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:26:01.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:01.344 -07 000000455 INF: FPGA: Recv ZPIEZORD 31412
17-03-18 05:26:01.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:01.354 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 05:26:01.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35613 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35606 (-168.2 uncal um), Max = 35617 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:01.354 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 5, negNoise = 6
17-03-18 05:26:01.354 -07 000000610 INF: Z Motor: After move to -0.169091, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:01.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:26:01.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:01.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:01.354 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:01.354 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:01.354 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:01.354 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:01.354 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:01.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:01.354 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:01.354 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:01.354 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:01.354 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:01.364 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:01.364 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:01.364 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:01.364 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:01.364 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:26:01.364 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:26:01.364 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:26:01.374 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:26:01.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37114 150\n [Camera]
17-03-18 05:26:01.574 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:01.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:01.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:02.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:02.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:02.014 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:02.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:02.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:02.014 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:02.014 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:02.014 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:26:02.014 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:02.014 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:02.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37114 823
17-03-18 05:26:02.354 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:02.394 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:26:02.394 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:26:02.394 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:02.404 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:02.404 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:26:02.404 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:26:02.404 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:26:02.404 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:02.404 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:02.414 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:26:02.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:02.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:02.564 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:02.564 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:02.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:02.564 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:02.574 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:02.574 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:26:02.574 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:02.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:26:02.754 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:02.754 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:02.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37114 150' command took 2 ms to send, 1376 ms to get response, and 1385 ms overall
17-03-18 05:26:02.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:02.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169102394803526. ------
17-03-18 05:26:02.764 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:02.764 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17557 mm
17-03-18 05:26:02.764 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:02.884 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:02.884 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-18 05:26:02.894 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:02.894 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38352, sync = True, waitForSettling = False)
17-03-18 05:26:02.894 -07 000000455 INF: Z Motor: Moving to -0.175564 mm, started at -0.169102 mm, distance = -6.46 um
17-03-18 05:26:02.894 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:26:02.894 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:26:02.904 -07 000000455 INF: FPGA: Xmit ZDACW 38352\n [Z Motor]
17-03-18 05:26:02.904 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:26:02.914 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:02.914 -07 000000455 INF: FPGA: 'ZDACW 38352' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:26:02.914 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:26:02.924 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:26:02.924 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:02.924 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:02.924 -07 000000625 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:26:02.924 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:02.924 -07 000000424 INF: FPGA: Recv ZDACR 38352
17-03-18 05:26:02.934 -07 000000455 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:26:02.934 -07 000000455 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:26:02.934 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:02.964 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:26:02.964 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:26:02.964 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:02.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:26:02.964 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:26:02.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:02.974 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:02.974 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:26:02.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:02.984 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:26:03.094 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:03.094 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 05:26:03.304 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:26:03.304 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:26:03.354 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:03.364 -07 000000461 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:26:03.364 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:26:03.364 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:03.364 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:26:03.364 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 05:26:03.724 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.988112,
17-03-18 05:26:04.314 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:04.314 -07 000000461 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:26:04.324 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.324 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:04.354 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:04.354 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:04.354 -07 000000625 INF: Y Motor: Moved to 66.5386 after 1463 ms (table move)
17-03-18 05:26:04.354 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175564 mm (DAC = 38352)
17-03-18 05:26:04.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.364 -07 000000606 INF: FPGA: Recv ZSGSRD 36616
17-03-18 05:26:04.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:26:04.364 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.364 -07 000000625 INF: FPGA: Recv ZSGSRD 36620
17-03-18 05:26:04.374 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:04.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.374 -07 000000455 INF: FPGA: Recv ZSGSRD 36624
17-03-18 05:26:04.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36612
17-03-18 05:26:04.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.394 -07 000000474 INF: FPGA: Recv ZSGSRD 36618
17-03-18 05:26:04.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.404 -07 000000424 INF: FPGA: Recv ZSGSRD 36617
17-03-18 05:26:04.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.414 -07 000000479 INF: FPGA: Recv ZSGSRD 36609
17-03-18 05:26:04.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.424 -07 000000424 INF: FPGA: Recv ZSGSRD 36620
17-03-18 05:26:04.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.434 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.434 -07 000000424 INF: FPGA: Recv ZSGSRD 36620
17-03-18 05:26:04.444 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.444 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:04.444 -07 000000455 INF: FPGA: Recv ZSGSRD 36622
17-03-18 05:26:04.454 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.454 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:04.454 -07 000000474 INF: FPGA: Recv ZPIEZORD 32743
17-03-18 05:26:04.464 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:04.464 -07 000000618 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.6 V.
17-03-18 05:26:04.464 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36618 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36619 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36609 (-174.6 uncal um), Max = 36624 (-174.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:26:04.464 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36618, posNoise = 6, negNoise = 9
17-03-18 05:26:04.464 -07 000000618 INF: Z Motor: After move to -0.175564, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:04.464 -07 000000618 INF: Z Motor: Settle wait time = 1467 ms, measure time = 103 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:26:04.464 -07 000000618 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:04.514 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1747 ms
17-03-18 05:26:04.514 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:04.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:04.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:04.514 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:04.514 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:04.514 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:04.514 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:04.514 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:04.514 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:04.524 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:04.524 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:04.524 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:26:04.524 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:26:04.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:04.574 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:04.874 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:04.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:04.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:04.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:26:04.914 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:04.914 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:04.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:26:04.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:26:04.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:04.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:04.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:26:05.014 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:05.014 -07 000000479 INF: Autofocus start
17-03-18 05:26:05.014 -07 000000479 INF: MeasureProfile start
17-03-18 05:26:05.014 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:05.024 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:05.024 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:05.024 -07 000000479 INF: MeasureProfile done
17-03-18 05:26:05.024 -07 000000479 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:26:05.024 -07 000000479 INF: Autofocus finished
17-03-18 05:26:05.224 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:05.224 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:05.234 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175565152218138. ----------
17-03-18 05:26:05.234 -07 000000610 INF: Cycle	137	Tile	9	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:05.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36832, sync = True, waitForSettling = True)
17-03-18 05:26:05.234 -07 000000610 INF: Z Motor: Moving to -0.168606 mm, started at -0.175565 mm, distance = 6.96 um
17-03-18 05:26:05.234 -07 000000610 INF: FPGA: Xmit ZDACW 36832\n [Z Motor]
17-03-18 05:26:05.234 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:26:05.244 -07 000000610 INF: FPGA: 'ZDACW 36832' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:26:05.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:05.244 -07 000000618 INF: FPGA: Recv ZDACR 36832
17-03-18 05:26:05.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.404 -07 000000618 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:26:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35540
17-03-18 05:26:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:26:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.434 -07 000000474 INF: FPGA: Recv ZSGSRD 35540
17-03-18 05:26:05.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.444 -07 000000479 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:26:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.454 -07 000000618 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:26:05.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.464 -07 000000618 INF: FPGA: Recv ZSGSRD 35542
17-03-18 05:26:05.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.474 -07 000000474 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:26:05.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.484 -07 000000424 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:26:05.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:05.494 -07 000000618 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:26:05.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:05.504 -07 000000479 INF: FPGA: Recv ZPIEZORD 31320
17-03-18 05:26:05.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:05.514 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.3 V.
17-03-18 05:26:05.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35537 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35542 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:26:05.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35537, posNoise = 5, negNoise = 8
17-03-18 05:26:05.514 -07 000000610 INF: Z Motor: After move to -0.168606, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:05.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:26:05.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:05.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:05.514 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:05.514 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:05.514 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:05.514 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:05.514 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:05.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:05.514 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:05.514 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:05.514 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:05.514 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:05.514 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:05.514 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:05.514 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:26:05.514 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:05.524 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:26:05.524 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:26:05.524 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:26:05.524 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:26:05.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37009 150\n [Camera]
17-03-18 05:26:05.734 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:06.174 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:06.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:06.174 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:06.174 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:06.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:06.174 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:06.174 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:06.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:26:06.174 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:06.174 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:06.364 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37009 823
17-03-18 05:26:06.514 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:06.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:26:06.574 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:26:06.574 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:06.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:26:06.574 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:26:06.574 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:06.574 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:06.574 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:26:06.574 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:26:06.584 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:26:06.724 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:06.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:06.724 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:06.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:06.724 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:06.724 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 05:26:06.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:06.724 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:06.724 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:06.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:26:06.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:06.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:06.914 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:06.914 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:06.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37009 150' command took 2 ms to send, 1376 ms to get response, and 1384 ms overall
17-03-18 05:26:06.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:06.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168620578892894. ------
17-03-18 05:26:06.924 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:06.924 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17535 mm
17-03-18 05:26:06.924 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:06.924 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38305, sync = True, waitForSettling = False)
17-03-18 05:26:06.934 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:06.934 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:26:06.934 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:26:06.934 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-18 05:26:06.944 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:06.944 -07 000000474 INF: Z Motor: Moving to -0.175349 mm, started at -0.168621 mm, distance = -6.73 um
17-03-18 05:26:06.944 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:26:06.954 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:06.954 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:06.954 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:06.954 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:26:06.954 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:06.964 -07 000000474 INF: FPGA: Xmit ZDACW 38305\n [Z Motor]
17-03-18 05:26:06.964 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:26:06.974 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:06.974 -07 000000474 INF: FPGA: 'ZDACW 38305' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:06.984 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:07.034 -07 000000606 INF: FPGA: Recv ZDACR 38305
17-03-18 05:26:07.044 -07 000000474 INF: FPGA: 'ZDACR' command took 53 ms to send, 0 ms to get response, and 69 ms overall
17-03-18 05:26:07.044 -07 000000474 INF: Z Motor: MoveAbsStepped took 100 ms (did NOT wait for settling yet))
17-03-18 05:26:07.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:26:07.134 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:26:07.134 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:26:07.134 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:07.134 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:26:07.134 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:07.134 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:07.134 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:07.134 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:26:07.144 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:26:07.154 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:07.154 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 215 ms overall
17-03-18 05:26:07.344 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:26:07.344 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:26:07.394 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:07.404 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:26:07.404 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:26:07.404 -07 000000424 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:07.404 -07 000000424 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:26:07.404 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:26:08.354 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:08.354 -07 000000479 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:26:08.364 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:08.364 -07 000000424 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:08.394 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:08.394 -07 000000424 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:26:08.394 -07 000000424 INF: Y Motor: Moved to 67.3716 after 1452 ms (table move)
17-03-18 05:26:08.394 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175349 mm (DAC = 38305)
17-03-18 05:26:08.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.394 -07 000000618 INF: FPGA: Recv ZSGSRD 36597
17-03-18 05:26:08.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:26:08.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.404 -07 000000618 INF: FPGA: Recv ZSGSRD 36591
17-03-18 05:26:08.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.414 -07 000000618 INF: FPGA: Recv ZSGSRD 36585
17-03-18 05:26:08.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.424 -07 000000424 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:26:08.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.434 -07 000000618 INF: FPGA: Recv ZSGSRD 36585
17-03-18 05:26:08.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.444 -07 000000618 INF: FPGA: Recv ZSGSRD 36586
17-03-18 05:26:08.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.464 -07 000000479 INF: FPGA: Recv ZSGSRD 36594
17-03-18 05:26:08.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:26:08.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.474 -07 000000608 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:26:08.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.484 -07 000000608 INF: FPGA: Recv ZSGSRD 36589
17-03-18 05:26:08.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:08.494 -07 000000608 INF: FPGA: Recv ZSGSRD 36584
17-03-18 05:26:08.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.504 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:08.504 -07 000000479 INF: FPGA: Recv ZPIEZORD 32733
17-03-18 05:26:08.514 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:08.514 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.5 V.
17-03-18 05:26:08.514 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36589 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36588 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36584 (-174.5 uncal um), Max = 36597 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:26:08.514 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36589, posNoise = 8, negNoise = 5
17-03-18 05:26:08.514 -07 000000512 INF: Z Motor: After move to -0.175349, error = -0.000030, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:08.514 -07 000000512 INF: Z Motor: Settle wait time = 1454 ms, measure time = 116 ms (allowed 150 ms), total time = 1570 ms
17-03-18 05:26:08.514 -07 000000512 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:08.554 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:26:08.554 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:08.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:08.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:08.554 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:08.554 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:08.554 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:08.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:08.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:08.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:08.564 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:08.564 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:08.564 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:26:08.564 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:26:08.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:08.614 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:08.914 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:08.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:08.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:08.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-18 05:26:08.954 -07 000000479 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:26:08.964 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:08.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 05:26:09.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:26:09.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:09.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:26:09.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:26:09.064 -07 000000479 INF: Autofocus start
17-03-18 05:26:09.064 -07 000000479 INF: MeasureProfile start
17-03-18 05:26:09.064 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:09.064 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:09.074 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:09.074 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:09.074 -07 000000479 INF: MeasureProfile done
17-03-18 05:26:09.074 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:26:09.074 -07 000000479 INF: Autofocus finished
17-03-18 05:26:09.104 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.003063,
17-03-18 05:26:09.274 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:09.274 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:09.274 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175378850066027. ----------
17-03-18 05:26:09.274 -07 000000610 INF: Cycle	137	Tile	10	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:09.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-18 05:26:09.284 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175379 mm, distance = 6.83 um
17-03-18 05:26:09.284 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-18 05:26:09.284 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:26:09.294 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:09.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:09.294 -07 000000608 INF: FPGA: Recv ZDACR 36820
17-03-18 05:26:09.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.454 -07 000000512 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:26:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:26:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35524
17-03-18 05:26:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:26:09.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.494 -07 000000625 INF: FPGA: Recv ZSGSRD 35525
17-03-18 05:26:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:26:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.514 -07 000000625 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:26:09.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.524 -07 000000455 INF: FPGA: Recv ZSGSRD 35526
17-03-18 05:26:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.534 -07 000000479 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:26:09.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:09.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35525
17-03-18 05:26:09.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:09.554 -07 000000479 INF: FPGA: Recv ZPIEZORD 31308
17-03-18 05:26:09.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:09.564 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.3 V.
17-03-18 05:26:09.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35527 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35527 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35524 (-167.7 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:26:09.564 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35527, posNoise = 4, negNoise = 3
17-03-18 05:26:09.564 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:09.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:26:09.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:09.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:09.564 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:09.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:09.564 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:09.564 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:09.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:09.564 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:09.564 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:09.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:26:09.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:09.564 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:09.574 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:09.574 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:09.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:09.574 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:09.584 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:26:09.584 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:26:09.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:26:09.584 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:26:09.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36996 150\n [Camera]
17-03-18 05:26:09.794 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:10.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:10.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:10.224 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:10.224 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:10.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:26:10.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:10.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:10.234 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:10.234 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:10.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:26:10.414 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36996 823
17-03-18 05:26:10.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:10.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:26:10.614 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:26:10.614 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:10.614 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:10.614 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:26:10.614 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:26:10.614 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:10.624 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:10.624 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:26:10.624 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:26:10.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:10.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:10.784 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:10.784 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:10.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:26:10.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:10.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:10.784 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:10.784 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:10.784 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:26:10.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:10.974 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:10.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36996 150' command took 2 ms to send, 1372 ms to get response, and 1383 ms overall
17-03-18 05:26:10.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:10.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168556336771476. ------
17-03-18 05:26:10.974 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:10.974 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17486 mm
17-03-18 05:26:10.974 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:10.984 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:26:10.984 -07 000000474 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 05:26:10.984 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38197, sync = True, waitForSettling = False)
17-03-18 05:26:10.984 -07 000000625 INF: Z Motor: Moving to -0.174855 mm, started at -0.168556 mm, distance = -6.30 um
17-03-18 05:26:10.984 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:10.984 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:10.984 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:10.984 -07 000000512 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:26:10.994 -07 000000474 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:10.994 -07 000000474 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:10.994 -07 000000474 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:11.114 -07 000000474 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:26:11.114 -07 000000625 INF: FPGA: Xmit ZDACW 38197\n [Z Motor]
17-03-18 05:26:11.114 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:26:11.124 -07 000000625 INF: FPGA: 'ZDACW 38197' command took 122 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 05:26:11.124 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:11.134 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:11.144 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:11.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:26:11.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:26:11.184 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:11.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:26:11.184 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:26:11.184 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:11.184 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:11.194 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:26:11.194 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:26:11.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:26:11.824 -07 000000012 INF: FPGA: Recv ZDACR 38197
17-03-18 05:26:11.824 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:11.824 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:26:11.824 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:11.824 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 680 ms to get response, and 707 ms overall
17-03-18 05:26:11.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:11.824 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 670 ms to get response, and 700 ms overall
17-03-18 05:26:11.824 -07 000000625 INF: Z Motor: MoveAbsStepped took 841 ms (did NOT wait for settling yet))
17-03-18 05:26:11.824 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 690 ms to get response, and 839 ms overall
17-03-18 05:26:11.874 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:11.874 -07 000000625 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:26:11.884 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:26:11.884 -07 000000474 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:11.884 -07 000000474 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:26:11.884 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 708 ms, distance = 0.841 mm, average velocity = 1.188 mm/sec
17-03-18 05:26:12.834 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:12.834 -07 000000012 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:26:12.844 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:12.844 -07 000000474 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:12.874 -07 000000474 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:12.874 -07 000000474 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:12.874 -07 000000474 INF: Y Motor: Moved to 68.2041 after 1892 ms (table move)
17-03-18 05:26:12.874 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174855 mm (DAC = 38197)
17-03-18 05:26:12.874 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.874 -07 000000012 INF: FPGA: Recv ZSGSRD 36513
17-03-18 05:26:12.884 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:12.884 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.884 -07 000000012 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:26:12.894 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.894 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.894 -07 000000474 INF: FPGA: Recv ZSGSRD 36507
17-03-18 05:26:12.904 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.904 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.904 -07 000000455 INF: FPGA: Recv ZSGSRD 36499
17-03-18 05:26:12.914 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.914 -07 000000012 INF: FPGA: Recv ZSGSRD 36511
17-03-18 05:26:12.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.924 -07 000000625 INF: FPGA: Recv ZSGSRD 36511
17-03-18 05:26:12.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.934 -07 000000625 INF: FPGA: Recv ZSGSRD 36508
17-03-18 05:26:12.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.944 -07 000000625 INF: FPGA: Recv ZSGSRD 36507
17-03-18 05:26:12.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.954 -07 000000012 INF: FPGA: Recv ZSGSRD 36511
17-03-18 05:26:12.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:12.964 -07 000000625 INF: FPGA: Recv ZSGSRD 36511
17-03-18 05:26:12.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:12.974 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:12.974 -07 000000625 INF: FPGA: Recv ZPIEZORD 32602
17-03-18 05:26:12.984 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:12.984 -07 000000461 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.6 V.
17-03-18 05:26:12.984 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36508 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36510 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36499 (-173.9 uncal um), Max = 36513 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:26:12.984 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36508, posNoise = 5, negNoise = 9
17-03-18 05:26:12.984 -07 000000461 INF: Z Motor: After move to -0.174855, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:12.984 -07 000000461 INF: Z Motor: Settle wait time = 1896 ms, measure time = 104 ms (allowed 150 ms), total time = 2000 ms
17-03-18 05:26:12.984 -07 000000461 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:13.034 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2052 ms
17-03-18 05:26:13.034 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:13.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:13.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:13.034 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:13.044 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:13.044 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:13.044 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:13.044 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:13.044 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:13.044 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:13.044 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:13.054 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:26:13.054 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:26:13.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:13.104 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:13.404 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:13.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:13.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:13.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:26:13.444 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:13.444 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:13.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 05:26:13.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:26:13.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:13.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:13.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:26:13.544 -07 000000424 INF: Autofocus start
17-03-18 05:26:13.544 -07 000000424 INF: MeasureProfile start
17-03-18 05:26:13.544 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:13.554 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:13.554 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:13.554 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:13.554 -07 000000424 INF: MeasureProfile done
17-03-18 05:26:13.554 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:26:13.554 -07 000000424 INF: Autofocus finished
17-03-18 05:26:13.754 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:13.754 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:13.764 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174858488882544. ----------
17-03-18 05:26:13.764 -07 000000610 INF: Cycle	137	Tile	11	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:13.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36694, sync = True, waitForSettling = True)
17-03-18 05:26:13.764 -07 000000610 INF: Z Motor: Moving to -0.167974 mm, started at -0.174858 mm, distance = 6.88 um
17-03-18 05:26:13.764 -07 000000610 INF: FPGA: Xmit ZDACW 36694\n [Z Motor]
17-03-18 05:26:13.764 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:26:13.774 -07 000000610 INF: FPGA: 'ZDACW 36694' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:13.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:13.774 -07 000000618 INF: FPGA: Recv ZDACR 36694
17-03-18 05:26:13.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:13.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:13.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35434
17-03-18 05:26:13.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:13.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.944 -07 000000012 INF: FPGA: Recv ZSGSRD 35441
17-03-18 05:26:13.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:13.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35435
17-03-18 05:26:13.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:13.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.964 -07 000000012 INF: FPGA: Recv ZSGSRD 35432
17-03-18 05:26:13.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:13.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.974 -07 000000618 INF: FPGA: Recv ZSGSRD 35440
17-03-18 05:26:13.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:13.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.984 -07 000000625 INF: FPGA: Recv ZSGSRD 35442
17-03-18 05:26:13.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:13.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:13.994 -07 000000012 INF: FPGA: Recv ZSGSRD 35437
17-03-18 05:26:14.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:14.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:14.004 -07 000000625 INF: FPGA: Recv ZSGSRD 35441
17-03-18 05:26:14.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:14.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:14.014 -07 000000424 INF: FPGA: Recv ZSGSRD 35437
17-03-18 05:26:14.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:14.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:14.024 -07 000000625 INF: FPGA: Recv ZSGSRD 35437
17-03-18 05:26:14.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:14.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:14.034 -07 000000012 INF: FPGA: Recv ZPIEZORD 31192
17-03-18 05:26:14.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:14.044 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.4 V.
17-03-18 05:26:14.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35438 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35437 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35432 (-167.1 uncal um), Max = 35442 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:14.044 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35438, posNoise = 4, negNoise = 6
17-03-18 05:26:14.044 -07 000000610 INF: Z Motor: After move to -0.167974, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:14.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:26:14.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:14.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:14.044 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:14.044 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:14.044 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:14.044 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:14.044 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:14.044 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:14.044 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:14.044 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:14.044 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:14.044 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:14.054 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:14.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:14.054 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:14.054 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:14.064 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:26:14.064 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:26:14.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:26:14.064 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:26:14.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36871 150\n [Camera]
17-03-18 05:26:14.264 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:14.464 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.042558,
17-03-18 05:26:14.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:14.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:14.704 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:14.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:14.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:14.714 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:14.714 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:14.714 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:26:14.714 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:14.714 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:15.104 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:26:15.104 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:26:15.104 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:15.114 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:26:15.114 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:26:15.114 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:15.114 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:15.114 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:26:15.114 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:15.124 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:26:15.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36871 823
17-03-18 05:26:15.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:15.264 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1185
17-03-18 05:26:15.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1185
17-03-18 05:26:15.264 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:15.264 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1185
17-03-18 05:26:15.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1185
17-03-18 05:26:15.264 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:15.274 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:15.274 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:26:15.274 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:15.274 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:26:15.664 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:26:15.664 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:26:15.664 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:15.674 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:26:15.674 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:26:15.674 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:15.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:15.674 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:15.674 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:26:15.684 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:26:15.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:26:15.684 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:15.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36871 150' command took 2 ms to send, 1604 ms to get response, and 1614 ms overall
17-03-18 05:26:15.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:15.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.16798458189086. ------
17-03-18 05:26:15.804 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17455 mm
17-03-18 05:26:15.804 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:15.804 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:16.534 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:26:16.534 -07 000000479 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:26:16.534 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:17.064 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:17.064 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:26:17.064 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:17.064 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 528 ms overall
17-03-18 05:26:17.064 -07 000000479 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:17.064 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1250 ms to get response, and 1252 ms overall
17-03-18 05:26:17.064 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:17.064 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:17.064 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38131, sync = True, waitForSettling = False)
17-03-18 05:26:17.064 -07 000000608 INF: Z Motor: Moving to -0.174553 mm, started at -0.167985 mm, distance = -6.57 um
17-03-18 05:26:17.064 -07 000000479 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:17.064 -07 000000479 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:26:17.074 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:17.084 -07 000000608 INF: FPGA: Xmit ZDACW 38131\n [Z Motor]
17-03-18 05:26:17.594 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:26:17.594 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:17.594 -07 000000608 INF: FPGA: 'ZDACW 38131' command took 0 ms to send, 500 ms to get response, and 528 ms overall
17-03-18 05:26:17.594 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:26:17.594 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 511 ms to get response, and 523 ms overall
17-03-18 05:26:17.594 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:17.594 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 05:26:17.594 -07 000000012 INF: FPGA: Recv ZDACR 38131
17-03-18 05:26:17.604 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:17.604 -07 000000608 INF: Z Motor: MoveAbsStepped took 537 ms (did NOT wait for settling yet))
17-03-18 05:26:17.644 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:17.654 -07 000000474 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:26:17.654 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:17.654 -07 000000479 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:17.654 -07 000000479 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:26:17.654 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 523 ms, distance = 0.839 mm, average velocity = 1.603 mm/sec
17-03-18 05:26:18.604 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:18.604 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:26:18.614 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:18.614 -07 000000479 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:18.644 -07 000000479 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:18.644 -07 000000479 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:18.644 -07 000000479 INF: Y Motor: Moved to 69.0264 after 2111 ms (table move)
17-03-18 05:26:18.644 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174553 mm (DAC = 38131)
17-03-18 05:26:18.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.644 -07 000000569 INF: FPGA: Recv ZSGSRD 36465
17-03-18 05:26:18.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:18.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.654 -07 000000474 INF: FPGA: Recv ZSGSRD 36463
17-03-18 05:26:18.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:18.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.664 -07 000000608 INF: FPGA: Recv ZSGSRD 36462
17-03-18 05:26:18.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.674 -07 000000012 INF: FPGA: Recv ZSGSRD 36462
17-03-18 05:26:18.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.684 -07 000000479 INF: FPGA: Recv ZSGSRD 36457
17-03-18 05:26:18.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.694 -07 000000512 INF: FPGA: Recv ZSGSRD 36465
17-03-18 05:26:18.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.704 -07 000000512 INF: FPGA: Recv ZSGSRD 36456
17-03-18 05:26:18.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.714 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.714 -07 000000479 INF: FPGA: Recv ZSGSRD 36461
17-03-18 05:26:18.724 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.724 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.724 -07 000000512 INF: FPGA: Recv ZSGSRD 36465
17-03-18 05:26:18.734 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.734 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:18.734 -07 000000512 INF: FPGA: Recv ZSGSRD 36461
17-03-18 05:26:18.744 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.744 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:18.744 -07 000000512 INF: FPGA: Recv ZPIEZORD 32550
17-03-18 05:26:18.754 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:18.754 -07 000000606 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.6 V.
17-03-18 05:26:18.754 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36462 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36462 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36456 (-173.6 uncal um), Max = 36465 (-173.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:18.754 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36462, posNoise = 3, negNoise = 6
17-03-18 05:26:18.754 -07 000000606 INF: Z Motor: After move to -0.174553, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:18.754 -07 000000606 INF: Z Motor: Settle wait time = 1583 ms, measure time = 105 ms (allowed 150 ms), total time = 1688 ms
17-03-18 05:26:18.754 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:18.804 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2992 ms
17-03-18 05:26:18.804 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:18.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:18.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:18.804 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:18.804 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:18.804 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:18.804 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:18.804 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:18.804 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:18.814 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:18.814 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:18.824 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:26:18.824 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:26:18.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:18.864 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:19.164 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:19.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:19.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:19.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:26:19.204 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:19.204 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:19.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:26:19.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:26:19.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:19.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:19.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:26:19.404 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:19.404 -07 000000608 INF: Autofocus start
17-03-18 05:26:19.404 -07 000000608 INF: MeasureProfile start
17-03-18 05:26:19.404 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:19.414 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:19.414 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:19.414 -07 000000608 INF: MeasureProfile done
17-03-18 05:26:19.414 -07 000000608 INF: X=80  Z correction [um]=0.337546
17-03-18 05:26:19.414 -07 000000608 INF: Autofocus finished
17-03-18 05:26:19.614 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:19.614 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:19.614 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174562975124023. ----------
17-03-18 05:26:19.614 -07 000000610 INF: Cycle	137	Tile	12	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:19.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36717, sync = True, waitForSettling = True)
17-03-18 05:26:19.624 -07 000000610 INF: Z Motor: Moving to -0.168080 mm, started at -0.174563 mm, distance = 6.48 um
17-03-18 05:26:19.624 -07 000000610 INF: FPGA: Xmit ZDACW 36717\n [Z Motor]
17-03-18 05:26:19.624 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:26:19.634 -07 000000610 INF: FPGA: 'ZDACW 36717' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:19.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:19.634 -07 000000569 INF: FPGA: Recv ZDACR 36717
17-03-18 05:26:19.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:19.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.794 -07 000000569 INF: FPGA: Recv ZSGSRD 35456
17-03-18 05:26:19.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:19.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35451
17-03-18 05:26:19.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.814 -07 000000618 INF: FPGA: Recv ZSGSRD 35458
17-03-18 05:26:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.834 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.026244,
17-03-18 05:26:19.834 -07 000000512 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:26:19.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:26:19.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.854 -07 000000455 INF: FPGA: Recv ZSGSRD 35455
17-03-18 05:26:19.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:26:19.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.864 -07 000000424 INF: FPGA: Recv ZSGSRD 35458
17-03-18 05:26:19.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.884 -07 000000569 INF: FPGA: Recv ZSGSRD 35451
17-03-18 05:26:19.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:26:19.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.894 -07 000000012 INF: FPGA: Recv ZSGSRD 35457
17-03-18 05:26:19.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.924 -07 000000012 INF: FPGA: Recv ZSGSRD 35452
17-03-18 05:26:19.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:19.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:19.934 -07 000000461 INF: FPGA: Recv ZSGSRD 35452
17-03-18 05:26:19.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:19.944 -07 000000569 INF: FPGA: Recv ZPIEZORD 31194
17-03-18 05:26:19.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:19.954 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 05:26:19.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35454 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35454 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35451 (-167.2 uncal um), Max = 35458 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:26:19.954 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35454, posNoise = 4, negNoise = 3
17-03-18 05:26:19.954 -07 000000610 INF: Z Motor: After move to -0.168080, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:19.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 05:26:19.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:19.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:19.954 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:19.954 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:19.954 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:19.954 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:19.954 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:19.954 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:19.954 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:19.954 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:19.954 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:19.954 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:19.964 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:26:19.964 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:19.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:26:19.964 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:19.974 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:26:19.974 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:26:19.974 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:26:19.974 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:26:19.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36894 150\n [Camera]
17-03-18 05:26:20.184 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:20.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:20.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:20.614 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:20.624 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:20.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:20.624 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:20.624 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:20.624 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:26:20.624 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:20.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:20.814 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36894 823
17-03-18 05:26:20.964 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 976
17-03-18 05:26:21.024 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:26:21.024 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:26:21.024 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:21.024 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:26:21.024 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:26:21.024 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:21.024 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:21.024 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:26:21.024 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:21.034 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:26:21.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:21.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:21.174 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:21.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:21.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:21.174 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:21.174 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:21.174 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 05:26:21.294 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:21.294 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:26:21.364 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:26:21.364 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:21.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36894 150' command took 2 ms to send, 1374 ms to get response, and 1384 ms overall
17-03-18 05:26:21.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:21.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168087369285128. ------
17-03-18 05:26:21.374 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:21.374 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17449 mm
17-03-18 05:26:21.374 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:21.554 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:26:21.554 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:26:21.554 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:21.554 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:21.564 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:26:21.574 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:21.574 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 193 ms to get response, and 200 ms overall
17-03-18 05:26:21.574 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:21.574 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:26:21.574 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:26:21.584 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:21.674 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:26:21.674 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:26:21.674 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:21.674 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:21.674 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-18 05:26:21.684 -07 000000512 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:26:21.684 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 96 ms to get response, and 111 ms overall
17-03-18 05:26:21.684 -07 000000012 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:21.684 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:21.684 -07 000000012 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:26:21.684 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:21.684 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38118, sync = True, waitForSettling = False)
17-03-18 05:26:21.684 -07 000000625 INF: Z Motor: Moving to -0.174493 mm, started at -0.168087 mm, distance = -6.41 um
17-03-18 05:26:21.694 -07 000000625 INF: FPGA: Xmit ZDACW 38118\n [Z Motor]
17-03-18 05:26:21.694 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:26:21.704 -07 000000625 INF: FPGA: 'ZDACW 38118' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:26:21.704 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:21.704 -07 000000606 INF: FPGA: Recv ZDACR 38118
17-03-18 05:26:21.714 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:21.714 -07 000000625 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 05:26:21.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:21.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:21.774 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:21.774 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 05:26:22.064 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:26:22.064 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 378 ms to get response, and 381 ms overall
17-03-18 05:26:22.124 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:22.124 -07 000000606 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:26:22.134 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:22.134 -07 000000012 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:22.134 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:26:22.134 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.846 mm, average velocity = 2.215 mm/sec
17-03-18 05:26:23.084 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:23.084 -07 000000474 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:26:23.094 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:23.094 -07 000000012 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:23.124 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:23.124 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:23.124 -07 000000012 INF: Y Motor: Moved to 69.8623 after 1546 ms (table move)
17-03-18 05:26:23.124 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174493 mm (DAC = 38118)
17-03-18 05:26:23.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.124 -07 000000512 INF: FPGA: Recv ZSGSRD 36452
17-03-18 05:26:23.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:26:23.134 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.134 -07 000000474 INF: FPGA: Recv ZSGSRD 36452
17-03-18 05:26:23.144 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.144 -07 000000474 INF: FPGA: Recv ZSGSRD 36449
17-03-18 05:26:23.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.154 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.154 -07 000000625 INF: FPGA: Recv ZSGSRD 36450
17-03-18 05:26:23.164 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.164 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.164 -07 000000012 INF: FPGA: Recv ZSGSRD 36447
17-03-18 05:26:23.174 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.174 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.174 -07 000000012 INF: FPGA: Recv ZSGSRD 36458
17-03-18 05:26:23.184 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.184 -07 000000012 INF: FPGA: Recv ZSGSRD 36462
17-03-18 05:26:23.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.194 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.194 -07 000000012 INF: FPGA: Recv ZSGSRD 36453
17-03-18 05:26:23.204 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.204 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.204 -07 000000012 INF: FPGA: Recv ZSGSRD 36453
17-03-18 05:26:23.214 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.214 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:23.214 -07 000000618 INF: FPGA: Recv ZSGSRD 36454
17-03-18 05:26:23.224 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.224 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:23.224 -07 000000512 INF: FPGA: Recv ZPIEZORD 32572
17-03-18 05:26:23.234 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:23.234 -07 000000455 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.6 V.
17-03-18 05:26:23.234 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36453 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36452 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36447 (-173.6 uncal um), Max = 36462 (-173.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:23.234 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36453, posNoise = 9, negNoise = 6
17-03-18 05:26:23.234 -07 000000455 INF: Z Motor: After move to -0.174493, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:23.234 -07 000000455 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-18 05:26:23.234 -07 000000455 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:23.284 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1906 ms
17-03-18 05:26:23.284 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:23.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:23.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:23.284 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:23.284 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:23.284 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:23.284 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:23.284 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:26:23.284 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:23.294 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:23.294 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:23.304 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:26:23.304 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:26:23.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:23.344 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:23.644 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:23.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:23.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:23.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608160040, 0x0, 559484976) start.
17-03-18 05:26:23.684 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:23.684 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:23.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:26:23.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608160040, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:26:23.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:23.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:23.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:26:23.884 -07 000000455 INF: Autofocus start
17-03-18 05:26:23.884 -07 000000455 INF: MeasureProfile start
17-03-18 05:26:23.884 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:23.884 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:23.894 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:26:23.894 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:23.894 -07 000000455 INF: MeasureProfile done
17-03-18 05:26:23.894 -07 000000455 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:26:23.894 -07 000000455 INF: Autofocus finished
17-03-18 05:26:24.094 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:24.094 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:26:24.094 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174505157214747. ----------
17-03-18 05:26:24.104 -07 000000610 INF: Cycle	137	Tile	13	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:24.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36598, sync = True, waitForSettling = True)
17-03-18 05:26:24.104 -07 000000610 INF: Z Motor: Moving to -0.167535 mm, started at -0.174505 mm, distance = 6.97 um
17-03-18 05:26:24.104 -07 000000610 INF: FPGA: Xmit ZDACW 36598\n [Z Motor]
17-03-18 05:26:24.104 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:26:24.114 -07 000000610 INF: FPGA: 'ZDACW 36598' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:24.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:24.114 -07 000000606 INF: FPGA: Recv ZDACR 36598
17-03-18 05:26:24.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:24.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.274 -07 000000606 INF: FPGA: Recv ZSGSRD 35376
17-03-18 05:26:24.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:24.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:26:24.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.294 -07 000000512 INF: FPGA: Recv ZSGSRD 35365
17-03-18 05:26:24.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.304 -07 000000618 INF: FPGA: Recv ZSGSRD 35370
17-03-18 05:26:24.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.314 -07 000000618 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:26:24.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.324 -07 000000569 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:26:24.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35366
17-03-18 05:26:24.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.344 -07 000000618 INF: FPGA: Recv ZSGSRD 35369
17-03-18 05:26:24.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:26:24.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:24.364 -07 000000625 INF: FPGA: Recv ZSGSRD 35370
17-03-18 05:26:24.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:24.374 -07 000000455 INF: FPGA: Recv ZPIEZORD 31086
17-03-18 05:26:24.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:24.384 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.4 V.
17-03-18 05:26:24.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35369 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35368 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35365 (-166.6 uncal um), Max = 35376 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:26:24.384 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35369, posNoise = 7, negNoise = 4
17-03-18 05:26:24.384 -07 000000610 INF: Z Motor: After move to -0.167535, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:24.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:26:24.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:24.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:24.384 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:24.384 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:24.384 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:24.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:24.384 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:24.384 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:24.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:24.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:24.384 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:24.384 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:24.394 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:24.394 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:24.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:26:24.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:24.404 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:26:24.404 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:26:24.404 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:26:24.404 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 05:26:24.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36774 150\n [Camera]
17-03-18 05:26:24.614 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:25.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:25.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:25.044 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:25.054 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:25.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:25.054 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:25.054 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:25.054 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:26:25.054 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:25.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:26:25.244 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.019446,
17-03-18 05:26:25.244 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36774 823
17-03-18 05:26:25.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:25.444 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:26:25.444 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:26:25.444 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:25.454 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:26:25.454 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:26:25.454 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:25.454 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:25.454 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:26:25.454 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:25.464 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:26:25.604 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:25.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:25.604 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:25.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:25.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:25.604 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:25.604 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:26:25.604 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:25.604 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:25.604 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:26:25.794 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1378
17-03-18 05:26:25.794 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:25.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36774 150' command took 2 ms to send, 1376 ms to get response, and 1385 ms overall
17-03-18 05:26:25.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:25.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167541311253078. ------
17-03-18 05:26:25.804 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:25.804 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17389 mm
17-03-18 05:26:25.804 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:25.804 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:25.804 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37987, sync = True, waitForSettling = False)
17-03-18 05:26:25.804 -07 000000424 INF: Z Motor: Moving to -0.173893 mm, started at -0.167541 mm, distance = -6.35 um
17-03-18 05:26:25.804 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:26:25.804 -07 000000625 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:26:25.814 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:25.814 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:25.814 -07 000000461 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:26:25.824 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:26:25.824 -07 000000625 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:25.824 -07 000000424 INF: FPGA: Xmit ZDACW 37987\n [Z Motor]
17-03-18 05:26:25.824 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:26:25.824 -07 000000625 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:25.824 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:26:25.834 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:25.834 -07 000000424 INF: FPGA: 'ZDACW 37987' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:26:25.844 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:25.854 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:25.854 -07 000000455 INF: FPGA: Recv ZDACR 37987
17-03-18 05:26:25.864 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:25.864 -07 000000424 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:26:26.004 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:26:26.004 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:26:26.004 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:26.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:26:26.004 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:26:26.004 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:26.014 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:26.014 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:26.014 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:26:26.014 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:26:26.034 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:26.034 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:26:26.214 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 05:26:26.214 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:26:26.264 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:26.274 -07 000000479 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:26:26.274 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:26.274 -07 000000625 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:26.274 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:26:26.274 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec
17-03-18 05:26:26.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:27.224 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:27.224 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:26:27.234 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.234 -07 000000625 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:27.264 -07 000000625 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:27.264 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:27.264 -07 000000625 INF: Y Motor: Moved to 70.6875 after 1455 ms (table move)
17-03-18 05:26:27.264 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173893 mm (DAC = 37987)
17-03-18 05:26:27.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.264 -07 000000625 INF: FPGA: Recv ZSGSRD 36368
17-03-18 05:26:27.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:27.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.274 -07 000000012 INF: FPGA: Recv ZSGSRD 36352
17-03-18 05:26:27.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.284 -07 000000625 INF: FPGA: Recv ZSGSRD 36357
17-03-18 05:26:27.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.294 -07 000000012 INF: FPGA: Recv ZSGSRD 36360
17-03-18 05:26:27.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.304 -07 000000606 INF: FPGA: Recv ZSGSRD 36353
17-03-18 05:26:27.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.314 -07 000000012 INF: FPGA: Recv ZSGSRD 36359
17-03-18 05:26:27.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.324 -07 000000606 INF: FPGA: Recv ZSGSRD 36357
17-03-18 05:26:27.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.334 -07 000000606 INF: FPGA: Recv ZSGSRD 36369
17-03-18 05:26:27.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.344 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.344 -07 000000012 INF: FPGA: Recv ZSGSRD 36365
17-03-18 05:26:27.354 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.354 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:27.354 -07 000000012 INF: FPGA: Recv ZSGSRD 36358
17-03-18 05:26:27.364 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.364 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:27.364 -07 000000606 INF: FPGA: Recv ZPIEZORD 32458
17-03-18 05:26:27.374 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:27.374 -07 000000569 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.6 V.
17-03-18 05:26:27.374 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36360 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36358 (-173.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36352 (-173.0 uncal um), Max = 36369 (-173.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:26:27.374 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36360, posNoise = 9, negNoise = 8
17-03-18 05:26:27.374 -07 000000569 INF: Z Motor: After move to -0.173893, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:27.374 -07 000000569 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:26:27.374 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:27.424 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 05:26:27.424 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:27.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:27.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:27.424 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:27.424 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:27.424 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:27.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:27.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:27.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:27.434 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:27.434 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:27.434 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:26:27.434 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:26:27.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:27.484 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:27.784 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:27.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:27.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:27.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:26:27.824 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:27.824 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:27.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 05:26:27.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:26:27.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:27.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:26:27.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:26:27.934 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:27.934 -07 000000474 INF: Autofocus start
17-03-18 05:26:27.934 -07 000000474 INF: MeasureProfile start
17-03-18 05:26:27.934 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:27.944 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:27.944 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:27.944 -07 000000474 INF: MeasureProfile done
17-03-18 05:26:27.944 -07 000000474 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:26:27.944 -07 000000474 INF: Autofocus finished
17-03-18 05:26:28.144 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:28.144 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:28.144 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173907705485563. ----------
17-03-18 05:26:28.144 -07 000000610 INF: Cycle	137	Tile	14	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:28.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36538, sync = True, waitForSettling = True)
17-03-18 05:26:28.154 -07 000000610 INF: Z Motor: Moving to -0.167260 mm, started at -0.173908 mm, distance = 6.65 um
17-03-18 05:26:28.154 -07 000000610 INF: FPGA: Xmit ZDACW 36538\n [Z Motor]
17-03-18 05:26:28.154 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:26:28.164 -07 000000610 INF: FPGA: 'ZDACW 36538' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:28.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:28.164 -07 000000606 INF: FPGA: Recv ZDACR 36538
17-03-18 05:26:28.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:28.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.324 -07 000000479 INF: FPGA: Recv ZSGSRD 35333
17-03-18 05:26:28.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:28.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35323
17-03-18 05:26:28.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.344 -07 000000424 INF: FPGA: Recv ZSGSRD 35332
17-03-18 05:26:28.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:28.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.354 -07 000000606 INF: FPGA: Recv ZSGSRD 35330
17-03-18 05:26:28.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.364 -07 000000606 INF: FPGA: Recv ZSGSRD 35330
17-03-18 05:26:28.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.374 -07 000000474 INF: FPGA: Recv ZSGSRD 35324
17-03-18 05:26:28.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35328
17-03-18 05:26:28.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.394 -07 000000606 INF: FPGA: Recv ZSGSRD 35325
17-03-18 05:26:28.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.404 -07 000000474 INF: FPGA: Recv ZSGSRD 35327
17-03-18 05:26:28.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:28.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35323
17-03-18 05:26:28.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:28.424 -07 000000479 INF: FPGA: Recv ZPIEZORD 31044
17-03-18 05:26:28.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:28.434 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.4 V.
17-03-18 05:26:28.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35328 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35328 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35323 (-166.4 uncal um), Max = 35333 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:26:28.434 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35328, posNoise = 5, negNoise = 5
17-03-18 05:26:28.434 -07 000000610 INF: Z Motor: After move to -0.167260, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:28.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:26:28.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:28.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:28.434 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:28.434 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:28.434 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:28.434 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:28.434 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:28.434 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:28.434 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:28.434 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:28.434 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:26:28.434 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:28.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:28.444 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:28.444 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:28.444 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:28.454 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:26:28.454 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:26:28.454 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:26:28.454 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:26:28.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36714 150\n [Camera]
17-03-18 05:26:28.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:29.094 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:29.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:29.094 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:29.094 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:29.094 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:26:29.094 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:29.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:29.094 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:29.094 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:29.094 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:26:29.284 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36714 823
17-03-18 05:26:29.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:29.494 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:26:29.494 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:26:29.494 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:29.494 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:26:29.494 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:26:29.494 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:29.504 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:29.504 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:26:29.504 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:29.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:26:29.644 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:29.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:29.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:29.644 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:29.644 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:26:29.644 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:29.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:29.654 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:29.654 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:29.654 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:26:29.834 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:29.834 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:29.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36714 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:26:29.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:29.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167277918555266. ------
17-03-18 05:26:29.844 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:29.844 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17398 mm
17-03-18 05:26:29.844 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:29.844 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:26:29.844 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:26:29.844 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38006, sync = True, waitForSettling = False)
17-03-18 05:26:29.844 -07 000000455 INF: Z Motor: Moving to -0.173980 mm, started at -0.167278 mm, distance = -6.70 um
17-03-18 05:26:29.844 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:29.854 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:29.854 -07 000000455 INF: FPGA: Xmit ZDACW 38006\n [Z Motor]
17-03-18 05:26:29.854 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:26:29.864 -07 000000455 INF: FPGA: 'ZDACW 38006' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:29.864 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:29.864 -07 000000474 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:26:29.874 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:29.874 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:26:29.874 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:29.874 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:29.874 -07 000000512 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:26:29.884 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:29.884 -07 000000461 INF: FPGA: Recv ZDACR 38006
17-03-18 05:26:29.894 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:29.894 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:29.894 -07 000000455 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:26:30.044 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:26:30.054 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:26:30.054 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:30.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:26:30.054 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:26:30.054 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:30.054 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:30.054 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:26:30.054 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:26:30.064 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:26:30.074 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:30.074 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:26:30.274 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:26:30.274 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-18 05:26:30.324 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:30.324 -07 000000479 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:26:30.334 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:30.334 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:30.334 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:26:30.334 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:26:30.604 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.06299,
17-03-18 05:26:31.284 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:31.284 -07 000000608 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:26:31.294 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:31.294 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:31.324 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:31.324 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:31.324 -07 000000512 INF: Y Motor: Moved to 71.5181 after 1472 ms (table move)
17-03-18 05:26:31.324 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173980 mm (DAC = 38006)
17-03-18 05:26:31.324 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.324 -07 000000461 INF: FPGA: Recv ZSGSRD 36377
17-03-18 05:26:31.334 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:26:31.334 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.334 -07 000000461 INF: FPGA: Recv ZSGSRD 36364
17-03-18 05:26:31.344 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.344 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.344 -07 000000512 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:26:31.354 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.354 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.354 -07 000000512 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:26:31.364 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.364 -07 000000461 INF: FPGA: Recv ZSGSRD 36370
17-03-18 05:26:31.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.374 -07 000000461 INF: FPGA: Recv ZSGSRD 36379
17-03-18 05:26:31.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.384 -07 000000512 INF: FPGA: Recv ZSGSRD 36368
17-03-18 05:26:31.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.394 -07 000000461 INF: FPGA: Recv ZSGSRD 36367
17-03-18 05:26:31.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.404 -07 000000461 INF: FPGA: Recv ZSGSRD 36369
17-03-18 05:26:31.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:31.414 -07 000000474 INF: FPGA: Recv ZSGSRD 36378
17-03-18 05:26:31.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.424 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:31.424 -07 000000625 INF: FPGA: Recv ZPIEZORD 32455
17-03-18 05:26:31.434 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:31.434 -07 000000424 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.7 V.
17-03-18 05:26:31.434 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36372 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36372 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36364 (-173.0 uncal um), Max = 36379 (-173.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:26:31.434 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36372, posNoise = 7, negNoise = 8
17-03-18 05:26:31.434 -07 000000424 INF: Z Motor: After move to -0.173980, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:31.434 -07 000000424 INF: Z Motor: Settle wait time = 1475 ms, measure time = 106 ms (allowed 150 ms), total time = 1581 ms
17-03-18 05:26:31.434 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:31.484 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 05:26:31.484 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:31.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:31.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:31.484 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:31.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:31.484 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:31.484 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:31.484 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:31.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:31.494 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:31.494 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:31.504 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:26:31.504 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:26:31.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:31.554 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:31.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:31.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:31.854 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:31.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:31.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:31.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-18 05:26:31.894 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:31.894 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:31.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 05:26:31.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:26:31.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:31.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:26:31.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:26:31.994 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:31.994 -07 000000625 INF: Autofocus start
17-03-18 05:26:31.994 -07 000000625 INF: MeasureProfile start
17-03-18 05:26:31.994 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:32.004 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:32.004 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:32.004 -07 000000625 INF: MeasureProfile done
17-03-18 05:26:32.004 -07 000000625 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:26:32.004 -07 000000625 INF: Autofocus finished
17-03-18 05:26:32.204 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:32.204 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:26:32.204 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173984796031264. ----------
17-03-18 05:26:32.204 -07 000000610 INF: Cycle	137	Tile	15	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:32.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36521, sync = True, waitForSettling = True)
17-03-18 05:26:32.214 -07 000000610 INF: Z Motor: Moving to -0.167182 mm, started at -0.173985 mm, distance = 6.80 um
17-03-18 05:26:32.214 -07 000000610 INF: FPGA: Xmit ZDACW 36521\n [Z Motor]
17-03-18 05:26:32.214 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:26:32.224 -07 000000610 INF: FPGA: 'ZDACW 36521' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:32.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:32.224 -07 000000424 INF: FPGA: Recv ZDACR 36521
17-03-18 05:26:32.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:32.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.384 -07 000000618 INF: FPGA: Recv ZSGSRD 35316
17-03-18 05:26:32.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:32.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.394 -07 000000606 INF: FPGA: Recv ZSGSRD 35311
17-03-18 05:26:32.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.404 -07 000000424 INF: FPGA: Recv ZSGSRD 35317
17-03-18 05:26:32.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.414 -07 000000606 INF: FPGA: Recv ZSGSRD 35313
17-03-18 05:26:32.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.424 -07 000000618 INF: FPGA: Recv ZSGSRD 35314
17-03-18 05:26:32.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35319
17-03-18 05:26:32.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.444 -07 000000424 INF: FPGA: Recv ZSGSRD 35312
17-03-18 05:26:32.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35314
17-03-18 05:26:32.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.464 -07 000000625 INF: FPGA: Recv ZSGSRD 35313
17-03-18 05:26:32.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:32.474 -07 000000424 INF: FPGA: Recv ZSGSRD 35318
17-03-18 05:26:32.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:32.484 -07 000000424 INF: FPGA: Recv ZPIEZORD 31051
17-03-18 05:26:32.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:32.494 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.4 V.
17-03-18 05:26:32.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35315 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35311 (-166.3 uncal um), Max = 35319 (-166.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:26:32.494 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35315, posNoise = 4, negNoise = 4
17-03-18 05:26:32.494 -07 000000610 INF: Z Motor: After move to -0.167182, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:32.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:26:32.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:32.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:32.494 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:32.494 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:32.494 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:32.494 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:32.494 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:32.494 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:32.494 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:32.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:32.494 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:32.494 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:32.494 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:32.494 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:32.494 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:26:32.504 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:32.504 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:26:32.504 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:26:32.514 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:26:32.514 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:26:32.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36697 150\n [Camera]
17-03-18 05:26:32.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:33.154 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:33.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:33.154 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:33.154 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:33.154 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 05:26:33.154 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:33.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:33.154 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:33.154 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:33.154 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 05:26:33.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36697 823
17-03-18 05:26:33.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:33.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:26:33.534 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:26:33.534 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:33.534 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:26:33.534 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:26:33.534 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:33.534 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:33.534 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:33.534 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 05:26:33.544 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:26:33.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:33.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:33.704 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:33.704 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:33.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 05:26:33.704 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:33.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:33.704 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:33.704 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:33.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 05:26:33.894 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:33.894 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:33.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36697 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:26:33.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:33.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.167194403797423. ------
17-03-18 05:26:33.904 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:33.904 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17366 mm
17-03-18 05:26:33.904 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:33.904 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:26:33.904 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37936, sync = True, waitForSettling = False)
17-03-18 05:26:33.904 -07 000000455 INF: Z Motor: Moving to -0.173660 mm, started at -0.167194 mm, distance = -6.47 um
17-03-18 05:26:33.904 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:33.904 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:26:33.914 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:26:33.914 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:33.914 -07 000000012 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:26:33.924 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:26:33.924 -07 000000455 INF: FPGA: Xmit ZDACW 37936\n [Z Motor]
17-03-18 05:26:33.924 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:33.924 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:26:33.924 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:33.924 -07 000000618 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:26:33.934 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:33.934 -07 000000455 INF: FPGA: 'ZDACW 37936' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:26:33.944 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:33.954 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:33.954 -07 000000479 INF: FPGA: Recv ZDACR 37936
17-03-18 05:26:33.964 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:33.964 -07 000000455 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:26:34.114 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:26:34.114 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:26:34.114 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:34.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:26:34.114 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:26:34.114 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:34.114 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:34.114 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:26:34.114 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:26:34.124 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:26:34.134 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:34.134 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:26:34.314 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:26:34.314 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 05:26:34.364 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:34.374 -07 000000424 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:26:34.374 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:26:34.374 -07 000000618 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:34.374 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:26:34.374 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 05:26:35.324 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:35.324 -07 000000606 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:26:35.334 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.334 -07 000000618 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:35.364 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:35.364 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:35.364 -07 000000618 INF: Y Motor: Moved to 72.3486 after 1454 ms (table move)
17-03-18 05:26:35.364 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173660 mm (DAC = 37936)
17-03-18 05:26:35.364 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36326
17-03-18 05:26:35.374 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:35.374 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.374 -07 000000455 INF: FPGA: Recv ZSGSRD 36325
17-03-18 05:26:35.384 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.384 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36322
17-03-18 05:26:35.394 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.394 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.394 -07 000000012 INF: FPGA: Recv ZSGSRD 36318
17-03-18 05:26:35.404 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.404 -07 000000012 INF: FPGA: Recv ZSGSRD 36311
17-03-18 05:26:35.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.414 -07 000000512 INF: FPGA: Recv ZSGSRD 36320
17-03-18 05:26:35.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.424 -07 000000455 INF: FPGA: Recv ZSGSRD 36328
17-03-18 05:26:35.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.434 -07 000000512 INF: FPGA: Recv ZSGSRD 36327
17-03-18 05:26:35.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.444 -07 000000512 INF: FPGA: Recv ZSGSRD 36322
17-03-18 05:26:35.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:35.454 -07 000000012 INF: FPGA: Recv ZSGSRD 36323
17-03-18 05:26:35.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.464 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:35.464 -07 000000512 INF: FPGA: Recv ZPIEZORD 32378
17-03-18 05:26:35.474 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:35.474 -07 000000608 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.7 V.
17-03-18 05:26:35.474 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36322 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36322 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36311 (-172.7 uncal um), Max = 36328 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:26:35.474 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36322, posNoise = 6, negNoise = 11
17-03-18 05:26:35.474 -07 000000608 INF: Z Motor: After move to -0.173660, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:35.474 -07 000000608 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:26:35.474 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:35.524 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:26:35.524 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:35.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:35.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:35.524 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:35.524 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:35.524 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:35.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:35.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:35.524 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:35.534 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:35.534 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:35.544 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:26:35.544 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:26:35.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:35.594 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:35.894 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:35.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:35.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:35.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:26:35.934 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:35.934 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:35.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 05:26:35.964 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.03576,
17-03-18 05:26:36.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:26:36.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:36.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:26:36.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:26:36.034 -07 000000569 INF: Autofocus start
17-03-18 05:26:36.034 -07 000000569 INF: MeasureProfile start
17-03-18 05:26:36.034 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:36.044 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:36.044 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:26:36.044 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:36.054 -07 000000569 INF: MeasureProfile done
17-03-18 05:26:36.054 -07 000000569 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:26:36.054 -07 000000569 INF: Autofocus finished
17-03-18 05:26:36.244 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:36.244 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:26:36.244 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173663585424176. ----------
17-03-18 05:26:36.254 -07 000000610 INF: Cycle	137	Tile	16	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:36.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36416, sync = True, waitForSettling = True)
17-03-18 05:26:36.254 -07 000000610 INF: Z Motor: Moving to -0.166702 mm, started at -0.173664 mm, distance = 6.96 um
17-03-18 05:26:36.254 -07 000000610 INF: FPGA: Xmit ZDACW 36416\n [Z Motor]
17-03-18 05:26:36.254 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:26:36.264 -07 000000610 INF: FPGA: 'ZDACW 36416' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:36.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:36.264 -07 000000606 INF: FPGA: Recv ZDACR 36416
17-03-18 05:26:36.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:36.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35243
17-03-18 05:26:36.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:36.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:26:36.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.444 -07 000000606 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:26:36.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.454 -07 000000569 INF: FPGA: Recv ZSGSRD 35242
17-03-18 05:26:36.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.464 -07 000000424 INF: FPGA: Recv ZSGSRD 35237
17-03-18 05:26:36.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.474 -07 000000455 INF: FPGA: Recv ZSGSRD 35241
17-03-18 05:26:36.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35238
17-03-18 05:26:36.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.494 -07 000000455 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:26:36.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.504 -07 000000606 INF: FPGA: Recv ZSGSRD 35240
17-03-18 05:26:36.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:36.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35234
17-03-18 05:26:36.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:36.524 -07 000000569 INF: FPGA: Recv ZPIEZORD 30954
17-03-18 05:26:36.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:36.534 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V.
17-03-18 05:26:36.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35239 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35238 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35234 (-165.8 uncal um), Max = 35243 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:26:36.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35239, posNoise = 4, negNoise = 5
17-03-18 05:26:36.534 -07 000000610 INF: Z Motor: After move to -0.166702, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:36.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:26:36.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:36.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:36.534 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:36.534 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:36.534 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:36.534 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:36.534 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:36.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:36.534 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:36.534 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:36.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:26:36.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:36.544 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:36.544 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:36.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:36.544 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:36.554 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:26:36.554 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:26:36.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:26:36.554 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:26:36.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36593 150\n [Camera]
17-03-18 05:26:36.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:36.764 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:36.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:37.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 631
17-03-18 05:26:37.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 631
17-03-18 05:26:37.204 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:37.204 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:37.204 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 05:26:37.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 631
17-03-18 05:26:37.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 631
17-03-18 05:26:37.204 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:37.204 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:37.204 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 05:26:37.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36593 823
17-03-18 05:26:37.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:37.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:26:37.584 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:26:37.584 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:37.584 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:26:37.584 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:26:37.584 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:37.584 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:26:37.584 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:26:37.584 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:26:37.594 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:26:37.754 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:37.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:37.754 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:37.754 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:37.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 05:26:37.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:37.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:37.754 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:37.754 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:37.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 05:26:37.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:37.944 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:37.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36593 150' command took 2 ms to send, 1375 ms to get response, and 1384 ms overall
17-03-18 05:26:37.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:37.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166706163674649. ------
17-03-18 05:26:37.954 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:37.954 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17313 mm
17-03-18 05:26:37.954 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:37.954 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:37.954 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37821, sync = True, waitForSettling = False)
17-03-18 05:26:37.954 -07 000000479 INF: Z Motor: Moving to -0.173133 mm, started at -0.166706 mm, distance = -6.43 um
17-03-18 05:26:37.954 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:26:37.954 -07 000000461 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:26:37.964 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:37.964 -07 000000479 INF: FPGA: Xmit ZDACW 37821\n [Z Motor]
17-03-18 05:26:37.964 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:26:37.974 -07 000000479 INF: FPGA: 'ZDACW 37821' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:26:37.974 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:37.974 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:26:37.984 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:37.984 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:26:37.984 -07 000000461 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:37.984 -07 000000461 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:37.984 -07 000000461 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:26:37.994 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:37.994 -07 000000474 INF: FPGA: Recv ZDACR 37821
17-03-18 05:26:38.004 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:38.004 -07 000000479 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:26:38.004 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:38.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:26:38.154 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:26:38.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:38.154 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:26:38.154 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:26:38.154 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:38.164 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:38.164 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:26:38.164 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:26:38.164 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:26:38.184 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:38.184 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:26:38.374 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:26:38.374 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:26:38.424 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:38.434 -07 000000012 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:26:38.434 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:26:38.434 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:38.434 -07 000000461 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:26:38.434 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-18 05:26:39.384 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:39.384 -07 000000512 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:26:39.394 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:39.394 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:39.424 -07 000000461 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:39.424 -07 000000461 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:39.424 -07 000000461 INF: Y Motor: Moved to 73.1753 after 1466 ms (table move)
17-03-18 05:26:39.424 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173133 mm (DAC = 37821)
17-03-18 05:26:39.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.434 -07 000000512 INF: FPGA: Recv ZSGSRD 36240
17-03-18 05:26:39.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:26:39.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.434 -07 000000461 INF: FPGA: Recv ZSGSRD 36242
17-03-18 05:26:39.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.444 -07 000000461 INF: FPGA: Recv ZSGSRD 36241
17-03-18 05:26:39.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.454 -07 000000461 INF: FPGA: Recv ZSGSRD 36241
17-03-18 05:26:39.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.464 -07 000000461 INF: FPGA: Recv ZSGSRD 36241
17-03-18 05:26:39.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.474 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.474 -07 000000618 INF: FPGA: Recv ZSGSRD 36241
17-03-18 05:26:39.484 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.484 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.484 -07 000000461 INF: FPGA: Recv ZSGSRD 36231
17-03-18 05:26:39.494 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.494 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.494 -07 000000618 INF: FPGA: Recv ZSGSRD 36240
17-03-18 05:26:39.504 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.504 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.504 -07 000000461 INF: FPGA: Recv ZSGSRD 36243
17-03-18 05:26:39.514 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.514 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:39.514 -07 000000461 INF: FPGA: Recv ZSGSRD 36239
17-03-18 05:26:39.524 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.524 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:39.524 -07 000000606 INF: FPGA: Recv ZPIEZORD 32311
17-03-18 05:26:39.534 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:39.534 -07 000000455 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.7 V.
17-03-18 05:26:39.534 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36240 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36241 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36231 (-172.2 uncal um), Max = 36243 (-172.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:26:39.534 -07 000000455 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36240, posNoise = 3, negNoise = 9
17-03-18 05:26:39.534 -07 000000455 INF: Z Motor: After move to -0.173133, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:39.534 -07 000000455 INF: Z Motor: Settle wait time = 1470 ms, measure time = 103 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:26:39.534 -07 000000455 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:39.584 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:26:39.584 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:39.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:39.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:39.584 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:39.584 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:39.584 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:39.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:39.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:39.584 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:39.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:39.594 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:39.604 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:26:39.604 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:26:39.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:39.654 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:39.954 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:39.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:39.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:39.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 05:26:39.994 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:39.994 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:39.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:26:40.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:26:40.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:40.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:40.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:26:40.094 -07 000000512 INF: Autofocus start
17-03-18 05:26:40.094 -07 000000512 INF: MeasureProfile start
17-03-18 05:26:40.094 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:40.094 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:40.104 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:40.104 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:40.104 -07 000000512 INF: MeasureProfile done
17-03-18 05:26:40.104 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:26:40.104 -07 000000512 INF: Autofocus finished
17-03-18 05:26:40.304 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:40.304 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:40.304 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173136800028552. ----------
17-03-18 05:26:40.304 -07 000000610 INF: Cycle	137	Tile	17	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:40.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36354, sync = True, waitForSettling = True)
17-03-18 05:26:40.314 -07 000000610 INF: Z Motor: Moving to -0.166418 mm, started at -0.173137 mm, distance = 6.72 um
17-03-18 05:26:40.314 -07 000000610 INF: FPGA: Xmit ZDACW 36354\n [Z Motor]
17-03-18 05:26:40.314 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:26:40.324 -07 000000610 INF: FPGA: 'ZDACW 36354' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:40.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:40.324 -07 000000455 INF: FPGA: Recv ZDACR 36354
17-03-18 05:26:40.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 05:26:40.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:40.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35196
17-03-18 05:26:40.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:40.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35193
17-03-18 05:26:40.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35198
17-03-18 05:26:40.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.514 -07 000000606 INF: FPGA: Recv ZSGSRD 35193
17-03-18 05:26:40.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.524 -07 000000512 INF: FPGA: Recv ZSGSRD 35194
17-03-18 05:26:40.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.534 -07 000000606 INF: FPGA: Recv ZSGSRD 35196
17-03-18 05:26:40.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.544 -07 000000474 INF: FPGA: Recv ZSGSRD 35196
17-03-18 05:26:40.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35197
17-03-18 05:26:40.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35193
17-03-18 05:26:40.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:40.574 -07 000000474 INF: FPGA: Recv ZSGSRD 35199
17-03-18 05:26:40.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:40.584 -07 000000606 INF: FPGA: Recv ZPIEZORD 30930
17-03-18 05:26:40.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:40.594 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.4 V.
17-03-18 05:26:40.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35196 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35196 (-165.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35193 (-165.5 uncal um), Max = 35199 (-165.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:26:40.594 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35196, posNoise = 3, negNoise = 3
17-03-18 05:26:40.594 -07 000000610 INF: Z Motor: After move to -0.166418, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:40.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:26:40.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:40.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:40.594 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:40.594 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:40.594 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:40.594 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:40.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:40.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:40.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:40.594 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:40.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:40.594 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:40.604 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:26:40.604 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:40.604 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:40.604 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:40.604 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:26:40.604 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:26:40.614 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:26:40.614 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:26:40.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36531 150\n [Camera]
17-03-18 05:26:40.814 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:41.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:41.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:41.254 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:41.254 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:41.254 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 05:26:41.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:41.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:41.254 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:41.254 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:41.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 05:26:41.324 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.999021,
17-03-18 05:26:41.444 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36531 823
17-03-18 05:26:41.594 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:41.644 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:26:41.644 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:26:41.644 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:41.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:26:41.644 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:26:41.644 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:41.644 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:41.644 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:26:41.644 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:41.654 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:26:41.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:41.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:41.804 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:41.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:41.804 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:41.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:41.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:41.944 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:41.944 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:41.944 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 05:26:41.954 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:41.954 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:41.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:26:41.994 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:41.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36531 150' command took 2 ms to send, 1375 ms to get response, and 1383 ms overall
17-03-18 05:26:41.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:41.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166429922552554. ------
17-03-18 05:26:42.004 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:42.004 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17228 mm
17-03-18 05:26:42.004 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:42.004 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:26:42.004 -07 000000479 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:26:42.004 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:42.004 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37635, sync = True, waitForSettling = False)
17-03-18 05:26:42.004 -07 000000625 INF: Z Motor: Moving to -0.172282 mm, started at -0.166430 mm, distance = -5.85 um
17-03-18 05:26:42.014 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:42.014 -07 000000625 INF: FPGA: Xmit ZDACW 37635\n [Z Motor]
17-03-18 05:26:42.014 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:26:42.024 -07 000000625 INF: FPGA: 'ZDACW 37635' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:26:42.024 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:42.024 -07 000000512 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:26:42.034 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:42.034 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:26:42.034 -07 000000479 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:42.034 -07 000000479 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:42.034 -07 000000479 INF: Y Motor: Moving 1356 steps-35
17-03-18 05:26:42.044 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:42.044 -07 000000512 INF: FPGA: Recv ZDACR 37635
17-03-18 05:26:42.054 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:42.054 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:42.054 -07 000000625 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:26:42.234 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:42.234 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:26:42.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:26:42.344 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:26:42.344 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:42.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:26:42.344 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:26:42.344 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:42.344 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:42.354 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:42.354 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms.
17-03-18 05:26:42.354 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:26:42.424 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:26:42.424 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:26:42.464 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:42.474 -07 000000012 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:26:42.474 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:26:42.474 -07 000000479 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:42.474 -07 000000479 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:26:42.474 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.145 mm/sec
17-03-18 05:26:43.424 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:43.424 -07 000000618 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:26:43.434 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:43.434 -07 000000479 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:43.454 -07 000000479 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:43.454 -07 000000479 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:43.454 -07 000000479 INF: Y Motor: Moved to 74.0073 after 1449 ms (table move)
17-03-18 05:26:43.454 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172282 mm (DAC = 37635)
17-03-18 05:26:43.454 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.464 -07 000000455 INF: FPGA: Recv ZSGSRD 36108
17-03-18 05:26:43.464 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:26:43.464 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.464 -07 000000455 INF: FPGA: Recv ZSGSRD 36112
17-03-18 05:26:43.474 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.474 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.474 -07 000000455 INF: FPGA: Recv ZSGSRD 36111
17-03-18 05:26:43.484 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.484 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.484 -07 000000512 INF: FPGA: Recv ZSGSRD 36102
17-03-18 05:26:43.494 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.494 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.494 -07 000000608 INF: FPGA: Recv ZSGSRD 36115
17-03-18 05:26:43.504 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:26:43.504 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.504 -07 000000512 INF: FPGA: Recv ZSGSRD 36107
17-03-18 05:26:43.514 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:43.514 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.514 -07 000000512 INF: FPGA: Recv ZSGSRD 36107
17-03-18 05:26:43.524 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.524 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.524 -07 000000608 INF: FPGA: Recv ZSGSRD 36105
17-03-18 05:26:43.534 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.534 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.534 -07 000000512 INF: FPGA: Recv ZSGSRD 36107
17-03-18 05:26:43.544 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.544 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:43.544 -07 000000512 INF: FPGA: Recv ZSGSRD 36111
17-03-18 05:26:43.554 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.554 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:43.554 -07 000000512 INF: FPGA: Recv ZPIEZORD 32141
17-03-18 05:26:43.564 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:43.564 -07 000000569 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.8 V.
17-03-18 05:26:43.564 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36108 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36108 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36102 (-171.4 uncal um), Max = 36115 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:43.564 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36108, posNoise = 7, negNoise = 6
17-03-18 05:26:43.564 -07 000000569 INF: Z Motor: After move to -0.172282, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:43.564 -07 000000569 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-18 05:26:43.564 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:43.614 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 05:26:43.614 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:43.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:43.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:43.614 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:43.614 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:43.614 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:43.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:43.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:43.614 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:43.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:43.624 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:43.634 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:26:43.634 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:26:43.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:43.684 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:43.984 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:43.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:43.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:43.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593483960, 0x0, 559484976) start.
17-03-18 05:26:44.024 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:44.024 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:44.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:26:44.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593483960, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:26:44.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:44.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:44.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:26:44.124 -07 000000512 INF: Autofocus start
17-03-18 05:26:44.124 -07 000000512 INF: MeasureProfile start
17-03-18 05:26:44.124 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:44.124 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:44.134 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:44.134 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:44.134 -07 000000512 INF: MeasureProfile done
17-03-18 05:26:44.134 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:26:44.134 -07 000000512 INF: Autofocus finished
17-03-18 05:26:44.334 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:44.334 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:44.334 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.17228880402584. ----------
17-03-18 05:26:44.334 -07 000000610 INF: Cycle	137	Tile	18	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:44.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36132, sync = True, waitForSettling = True)
17-03-18 05:26:44.344 -07 000000610 INF: Z Motor: Moving to -0.165402 mm, started at -0.172289 mm, distance = 6.89 um
17-03-18 05:26:44.344 -07 000000610 INF: FPGA: Xmit ZDACW 36132\n [Z Motor]
17-03-18 05:26:44.344 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:26:44.354 -07 000000610 INF: FPGA: 'ZDACW 36132' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:44.354 -07 000000618 INF: FPGA: Recv ZDACR 36132
17-03-18 05:26:44.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:44.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.514 -07 000000569 INF: FPGA: Recv ZSGSRD 35042
17-03-18 05:26:44.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.524 -07 000000618 INF: FPGA: Recv ZSGSRD 35041
17-03-18 05:26:44.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.534 -07 000000512 INF: FPGA: Recv ZSGSRD 35031
17-03-18 05:26:44.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.544 -07 000000618 INF: FPGA: Recv ZSGSRD 35038
17-03-18 05:26:44.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.554 -07 000000608 INF: FPGA: Recv ZSGSRD 35040
17-03-18 05:26:44.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.564 -07 000000608 INF: FPGA: Recv ZSGSRD 35034
17-03-18 05:26:44.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.574 -07 000000618 INF: FPGA: Recv ZSGSRD 35033
17-03-18 05:26:44.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35043
17-03-18 05:26:44.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.594 -07 000000618 INF: FPGA: Recv ZSGSRD 35040
17-03-18 05:26:44.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:44.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35032
17-03-18 05:26:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:44.614 -07 000000569 INF: FPGA: Recv ZPIEZORD 30737
17-03-18 05:26:44.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:44.624 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.513 V. Piezo Error = -9.5 V.
17-03-18 05:26:44.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35037 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35039 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35031 (-164.5 uncal um), Max = 35043 (-164.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:44.624 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35037, posNoise = 6, negNoise = 6
17-03-18 05:26:44.624 -07 000000610 INF: Z Motor: After move to -0.165402, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:44.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:26:44.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:44.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:44.624 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:44.624 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:44.624 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:44.624 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:44.624 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:44.624 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:44.624 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:26:44.624 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:44.624 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:44.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:44.634 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:26:44.634 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:44.634 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:26:44.634 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:44.644 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:26:44.644 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:26:44.644 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:26:44.644 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:26:44.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36308 150\n [Camera]
17-03-18 05:26:44.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:45.284 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:45.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:45.284 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:45.284 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:45.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:45.284 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:45.294 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:45.294 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:26:45.294 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:45.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:26:45.474 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36308 823
17-03-18 05:26:45.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:45.664 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:26:45.664 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:26:45.664 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:45.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 05:26:45.664 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 05:26:45.664 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:45.674 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:45.674 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:26:45.674 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:45.674 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:26:45.834 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:45.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:45.834 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:45.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:45.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:45.954 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:45.954 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:45.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 05:26:45.964 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:45.964 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:46.024 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:46.024 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:46.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36308 150' command took 2 ms to send, 1376 ms to get response, and 1384 ms overall
17-03-18 05:26:46.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:26:46.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165408472822014. ------
17-03-18 05:26:46.034 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:46.034 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17174 mm
17-03-18 05:26:46.034 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:46.034 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:26:46.034 -07 000000474 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:26:46.034 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37516, sync = True, waitForSettling = False)
17-03-18 05:26:46.034 -07 000000479 INF: Z Motor: Moving to -0.171737 mm, started at -0.165408 mm, distance = -6.33 um
17-03-18 05:26:46.034 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:46.044 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:46.044 -07 000000479 INF: FPGA: Xmit ZDACW 37516\n [Z Motor]
17-03-18 05:26:46.044 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:26:46.054 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:46.054 -07 000000479 INF: FPGA: 'ZDACW 37516' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:26:46.054 -07 000000424 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:26:46.064 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:26:46.064 -07 000000474 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:46.064 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:46.064 -07 000000474 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:46.064 -07 000000474 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:26:46.074 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:46.074 -07 000000625 INF: FPGA: Recv ZDACR 37516
17-03-18 05:26:46.084 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:46.084 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:46.084 -07 000000479 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 05:26:46.264 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:46.264 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:26:46.354 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:26:46.354 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:26:46.354 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:46.354 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:26:46.354 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:26:46.354 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:46.364 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:46.364 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 05:26:46.364 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:46.364 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:26:46.454 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:26:46.454 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:26:46.494 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:46.494 -07 000000479 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:26:46.504 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:46.504 -07 000000474 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:46.504 -07 000000474 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:26:46.504 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:26:46.684 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.973092,
17-03-18 05:26:46.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:46.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:47.454 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:47.454 -07 000000479 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:26:47.464 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:47.464 -07 000000474 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:47.474 -07 000000474 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:47.484 -07 000000474 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:26:47.484 -07 000000474 INF: Y Motor: Moved to 74.8311 after 1444 ms (table move)
17-03-18 05:26:47.484 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171737 mm (DAC = 37516)
17-03-18 05:26:47.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.484 -07 000000479 INF: FPGA: Recv ZSGSRD 36035
17-03-18 05:26:47.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:47.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.494 -07 000000474 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:26:47.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.504 -07 000000479 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:26:47.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.514 -07 000000474 INF: FPGA: Recv ZSGSRD 36025
17-03-18 05:26:47.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.524 -07 000000474 INF: FPGA: Recv ZSGSRD 36028
17-03-18 05:26:47.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.534 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.534 -07 000000479 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:26:47.544 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.544 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.544 -07 000000474 INF: FPGA: Recv ZSGSRD 36026
17-03-18 05:26:47.554 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.554 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.554 -07 000000479 INF: FPGA: Recv ZSGSRD 36018
17-03-18 05:26:47.564 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.564 -07 000000474 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:26:47.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:47.574 -07 000000479 INF: FPGA: Recv ZSGSRD 36024
17-03-18 05:26:47.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.584 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:47.584 -07 000000474 INF: FPGA: Recv ZPIEZORD 32032
17-03-18 05:26:47.594 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:47.594 -07 000000606 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -8.8 V.
17-03-18 05:26:47.594 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36024 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36015 (-170.8 uncal um), Max = 36035 (-170.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:26:47.594 -07 000000606 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36024, posNoise = 11, negNoise = 9
17-03-18 05:26:47.594 -07 000000606 INF: Z Motor: After move to -0.171737, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:47.594 -07 000000606 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-18 05:26:47.594 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:47.644 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 05:26:47.644 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:47.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:47.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:47.644 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:47.644 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:47.644 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:47.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:47.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:26:47.644 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:47.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:47.654 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:47.654 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:26:47.654 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:26:47.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:47.704 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:48.004 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:48.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:48.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:48.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593483960, 0x0, 559484976) start.
17-03-18 05:26:48.044 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:48.044 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:48.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:26:48.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593483960, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:26:48.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:48.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:48.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:26:48.144 -07 000000479 INF: Autofocus start
17-03-18 05:26:48.144 -07 000000479 INF: MeasureProfile start
17-03-18 05:26:48.144 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:48.144 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:48.154 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:26:48.154 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:48.154 -07 000000479 INF: MeasureProfile done
17-03-18 05:26:48.154 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:26:48.154 -07 000000479 INF: Autofocus finished
17-03-18 05:26:48.354 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:48.354 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:48.354 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171749170205932. ----------
17-03-18 05:26:48.354 -07 000000610 INF: Cycle	137	Tile	19	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:48.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36030, sync = True, waitForSettling = True)
17-03-18 05:26:48.364 -07 000000610 INF: Z Motor: Moving to -0.164935 mm, started at -0.171749 mm, distance = 6.81 um
17-03-18 05:26:48.364 -07 000000610 INF: FPGA: Xmit ZDACW 36030\n [Z Motor]
17-03-18 05:26:48.364 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:26:48.374 -07 000000610 INF: FPGA: 'ZDACW 36030' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:48.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:48.374 -07 000000606 INF: FPGA: Recv ZDACR 36030
17-03-18 05:26:48.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:48.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.534 -07 000000479 INF: FPGA: Recv ZSGSRD 34967
17-03-18 05:26:48.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:48.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.544 -07 000000012 INF: FPGA: Recv ZSGSRD 34963
17-03-18 05:26:48.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.554 -07 000000474 INF: FPGA: Recv ZSGSRD 34964
17-03-18 05:26:48.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.564 -07 000000012 INF: FPGA: Recv ZSGSRD 34963
17-03-18 05:26:48.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.574 -07 000000479 INF: FPGA: Recv ZSGSRD 34959
17-03-18 05:26:48.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.584 -07 000000474 INF: FPGA: Recv ZSGSRD 34970
17-03-18 05:26:48.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.594 -07 000000012 INF: FPGA: Recv ZSGSRD 34965
17-03-18 05:26:48.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.604 -07 000000474 INF: FPGA: Recv ZSGSRD 34968
17-03-18 05:26:48.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.614 -07 000000012 INF: FPGA: Recv ZSGSRD 34964
17-03-18 05:26:48.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:48.624 -07 000000479 INF: FPGA: Recv ZSGSRD 34964
17-03-18 05:26:48.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:48.634 -07 000000012 INF: FPGA: Recv ZPIEZORD 30677
17-03-18 05:26:48.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:48.644 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.498 V. Piezo Error = -9.4 V.
17-03-18 05:26:48.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34965 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34964 (-164.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34959 (-164.0 uncal um), Max = 34970 (-164.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:26:48.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34965, posNoise = 5, negNoise = 6
17-03-18 05:26:48.644 -07 000000610 INF: Z Motor: After move to -0.164935, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:48.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:26:48.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:48.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:48.644 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:48.644 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:48.644 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:48.644 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:48.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:48.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:48.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:48.644 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:48.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:48.644 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:48.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:26:48.654 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:48.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:26:48.654 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:48.664 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:26:48.664 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:26:48.664 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:26:48.664 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:26:48.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36207 150\n [Camera]
17-03-18 05:26:48.864 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:26:49.304 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 631
17-03-18 05:26:49.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 631
17-03-18 05:26:49.304 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:49.304 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 631
17-03-18 05:26:49.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 631
17-03-18 05:26:49.304 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:49.304 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:49.314 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:26:49.314 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:49.314 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:26:49.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36207 823
17-03-18 05:26:49.644 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:49.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:26:49.684 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:26:49.684 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:49.684 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:26:49.684 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:26:49.684 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:49.694 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:26:49.694 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:26:49.694 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:26:49.694 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:26:49.854 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:49.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:49.854 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:49.854 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:49.854 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:49.854 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:26:49.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:49.864 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:49.864 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:49.864 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:26:50.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:26:50.044 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:50.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36207 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:26:50.264 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:26:50.264 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:26:50.264 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:50.264 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:26:50.264 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:26:50.264 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:50.264 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:50.274 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:26:50.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:26:50.274 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:26:50.274 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:26:50.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:26:50.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:26:50.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:26:50.354 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:26:50.354 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:26:50.354 -07 000000479 INF: FPGA: Recv EMCUR 
17-03-18 05:26:50.364 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:26:50.364 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:26:50.864 -07 000000618 INF: FPGA: Recv EMIN
17-03-18 05:26:50.864 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-18 05:26:50.864 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:26:50.864 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 05:26:50.874 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:26:50.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:26:50.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164945929547807. ------
17-03-18 05:26:50.994 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:50.994 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13939 mm
17-03-18 05:26:50.994 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:50.994 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:26:50.994 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 05:26:50.994 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30450, sync = True, waitForSettling = False)
17-03-18 05:26:50.994 -07 000000608 INF: Z Motor: Moving to -0.139391 mm, started at -0.164946 mm, distance = 25.55 um
17-03-18 05:26:51.004 -07 000000608 INF: FPGA: Xmit ZDACW 30450\n [Z Motor]
17-03-18 05:26:51.004 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:51.004 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 05:26:51.004 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:26:51.014 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:51.014 -07 000000608 INF: FPGA: 'ZDACW 30450' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:26:51.014 -07 000000625 INF: FPGA: Recv YRDPOS 153256
17-03-18 05:26:51.024 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:26:51.024 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:51.024 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:51.034 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:51.034 -07 000000618 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:26:51.034 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:26:51.034 -07 000000455 INF: FPGA: Recv ZDACR 30450
17-03-18 05:26:51.044 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:51.044 -07 000000608 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:26:51.044 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:26:51.224 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:51.224 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:26:52.314 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:52.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:52.624 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.985358,
17-03-18 05:26:52.674 -07 000000424 INF: FPGA: Recv YMVTO 122701 23905
17-03-18 05:26:52.674 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1640 ms overall
17-03-18 05:26:52.674 -07 000000618 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:26:52.674 -07 000000618 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23905 steps (14.941 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:26:52.674 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.097 mm/sec
17-03-18 05:26:55.524 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:55.524 -07 000000479 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:26:55.534 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:55.534 -07 000000618 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:55.574 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:55.574 -07 000000618 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:26:55.574 -07 000000618 INF: Y Motor: Moved to 59.9097 after 4572 ms
17-03-18 05:26:55.574 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139391 mm (DAC = 30450)
17-03-18 05:26:55.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.574 -07 000000625 INF: FPGA: Recv ZSGSRD 30991
17-03-18 05:26:55.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:55.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30987
17-03-18 05:26:55.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.594 -07 000000625 INF: FPGA: Recv ZSGSRD 30986
17-03-18 05:26:55.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.604 -07 000000479 INF: FPGA: Recv ZSGSRD 30987
17-03-18 05:26:55.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.614 -07 000000625 INF: FPGA: Recv ZSGSRD 30992
17-03-18 05:26:55.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.624 -07 000000424 INF: FPGA: Recv ZSGSRD 30987
17-03-18 05:26:55.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.634 -07 000000625 INF: FPGA: Recv ZSGSRD 30988
17-03-18 05:26:55.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.644 -07 000000479 INF: FPGA: Recv ZSGSRD 30986
17-03-18 05:26:55.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.654 -07 000000625 INF: FPGA: Recv ZSGSRD 30983
17-03-18 05:26:55.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:55.664 -07 000000569 INF: FPGA: Recv ZSGSRD 30992
17-03-18 05:26:55.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.674 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:55.674 -07 000000625 INF: FPGA: Recv ZPIEZORD 26475
17-03-18 05:26:55.684 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:55.684 -07 000000606 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.646 V. Piezo Error = -9.9 V.
17-03-18 05:26:55.684 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30988 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30987 (-138.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30983 (-138.6 uncal um), Max = 30992 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:26:55.684 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30988, posNoise = 4, negNoise = 5
17-03-18 05:26:55.684 -07 000000606 INF: Z Motor: After move to -0.139391, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:55.684 -07 000000606 INF: Z Motor: Settle wait time = 4575 ms, measure time = 107 ms (allowed 150 ms), total time = 4682 ms
17-03-18 05:26:55.684 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:55.734 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4734 ms
17-03-18 05:26:55.734 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:55.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:55.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:55.734 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:55.734 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:55.734 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:55.734 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:55.734 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:55.744 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:26:55.764 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 05:26:55.764 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:55.764 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:26:55.764 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:55.774 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:26:55.774 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-18 05:26:55.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:55.824 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:26:56.124 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:26:56.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:26:56.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:26:56.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:26:56.164 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:26:56.164 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:26:56.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:26:56.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:26:56.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:56.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:26:56.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:26:56.264 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:56.264 -07 000000461 INF: Image SNR check: start
17-03-18 05:26:56.264 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:56.274 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:26:56.274 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:26:56.284 -07 000000461 INF: Image SNR check: pass  [peak (Max-Min)=123.47]
17-03-18 05:26:56.284 -07 000000461 INF: Autofocus start
17-03-18 05:26:56.284 -07 000000461 INF: MeasureProfile start
17-03-18 05:26:56.294 -07 000000461 INF: MeasureProfile done
17-03-18 05:26:56.294 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:26:56.294 -07 000000461 INF: Autofocus finished
17-03-18 05:26:56.474 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:26:56.474 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:26:56.474 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139396837860024. ----------
17-03-18 05:26:56.474 -07 000000610 INF: Cycle	137	Tile	1	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:26:56.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28957, sync = True, waitForSettling = True)
17-03-18 05:26:56.484 -07 000000610 INF: Z Motor: Moving to -0.132557 mm, started at -0.139397 mm, distance = 6.84 um
17-03-18 05:26:56.484 -07 000000610 INF: FPGA: Xmit ZDACW 28957\n [Z Motor]
17-03-18 05:26:56.484 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:26:56.494 -07 000000610 INF: FPGA: 'ZDACW 28957' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:56.494 -07 000000569 INF: FPGA: Recv ZDACR 28957
17-03-18 05:26:56.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:26:56.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.654 -07 000000625 INF: FPGA: Recv ZSGSRD 29922
17-03-18 05:26:56.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:56.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.664 -07 000000479 INF: FPGA: Recv ZSGSRD 29925
17-03-18 05:26:56.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.674 -07 000000424 INF: FPGA: Recv ZSGSRD 29926
17-03-18 05:26:56.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.684 -07 000000455 INF: FPGA: Recv ZSGSRD 29922
17-03-18 05:26:56.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.694 -07 000000625 INF: FPGA: Recv ZSGSRD 29923
17-03-18 05:26:56.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.704 -07 000000569 INF: FPGA: Recv ZSGSRD 29926
17-03-18 05:26:56.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.714 -07 000000424 INF: FPGA: Recv ZSGSRD 29928
17-03-18 05:26:56.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.724 -07 000000569 INF: FPGA: Recv ZSGSRD 29923
17-03-18 05:26:56.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.734 -07 000000625 INF: FPGA: Recv ZSGSRD 29924
17-03-18 05:26:56.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:56.744 -07 000000424 INF: FPGA: Recv ZSGSRD 29927
17-03-18 05:26:56.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:56.754 -07 000000606 INF: FPGA: Recv ZPIEZORD 25338
17-03-18 05:26:56.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:56.764 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -10.1 V.
17-03-18 05:26:56.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29925 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29924 (-131.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29922 (-131.8 uncal um), Max = 29928 (-131.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:26:56.764 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29925, posNoise = 3, negNoise = 3
17-03-18 05:26:56.764 -07 000000610 INF: Z Motor: After move to -0.132557, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:56.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:26:56.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:56.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:56.764 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:56.764 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:56.764 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:26:56.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:56.764 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:26:56.764 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:26:56.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:26:56.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:26:56.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:26:56.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:26:56.764 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:26:56.764 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:26:56.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:56.764 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:26:56.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:26:56.774 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms.
17-03-18 05:26:56.784 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 05:26:56.784 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:26:56.794 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:26:56.794 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:26:56.794 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:26:56.794 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 05:26:56.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29134 150\n [Camera]
17-03-18 05:26:57.004 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 05:26:57.444 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:26:57.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:26:57.444 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:57.444 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:26:57.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:26:57.444 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:57.444 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:57.444 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:26:57.454 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:57.454 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:26:57.634 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29134 823
17-03-18 05:26:57.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:26:57.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:26:57.824 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:26:57.824 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:57.824 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:26:57.824 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:26:57.824 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:57.824 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:57.824 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:26:57.824 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:57.834 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:26:57.984 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.990831,
17-03-18 05:26:57.994 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:26:57.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:26:57.994 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:26:57.994 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:26:57.994 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:26:57.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:26:57.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:26:57.994 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:26:57.994 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:26:57.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:26:58.184 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:26:58.184 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:26:58.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29134 150' command took 2 ms to send, 1376 ms to get response, and 1383 ms overall
17-03-18 05:26:58.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:26:58.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132567900353332. ------
17-03-18 05:26:58.194 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:26:58.194 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13892 mm
17-03-18 05:26:58.194 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:26:58.194 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:26:58.194 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:26:58.194 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:26:58.194 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30346, sync = True, waitForSettling = False)
17-03-18 05:26:58.194 -07 000000479 INF: Z Motor: Moving to -0.138915 mm, started at -0.132568 mm, distance = -6.35 um
17-03-18 05:26:58.204 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:26:58.204 -07 000000479 INF: FPGA: Xmit ZDACW 30346\n [Z Motor]
17-03-18 05:26:58.204 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:26:58.214 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:58.214 -07 000000479 INF: FPGA: 'ZDACW 30346' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:26:58.214 -07 000000606 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:26:58.224 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:26:58.224 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:26:58.224 -07 000000012 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:58.224 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:26:58.224 -07 000000012 INF: Y Motor: Moving 1333 steps0
17-03-18 05:26:58.234 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:26:58.234 -07 000000608 INF: FPGA: Recv ZDACR 30346
17-03-18 05:26:58.244 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:26:58.244 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:26:58.244 -07 000000479 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:26:58.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:26:58.384 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:26:58.384 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:58.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:26:58.384 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:26:58.384 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:26:58.384 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:26:58.394 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:26:58.394 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:26:58.394 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:26:58.424 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:26:58.424 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:26:58.614 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:26:58.614 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:26:58.654 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:58.664 -07 000000461 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:26:58.664 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:26:58.664 -07 000000012 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:58.664 -07 000000012 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:26:58.664 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 05:26:59.614 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:26:59.614 -07 000000461 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:26:59.624 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:26:59.624 -07 000000012 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:26:59.654 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:26:59.654 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:26:59.654 -07 000000012 INF: Y Motor: Moved to 60.7319 after 1457 ms (table move)
17-03-18 05:26:59.654 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138915 mm (DAC = 30346)
17-03-18 05:26:59.654 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.664 -07 000000606 INF: FPGA: Recv ZSGSRD 30912
17-03-18 05:26:59.664 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:26:59.664 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.664 -07 000000012 INF: FPGA: Recv ZSGSRD 30926
17-03-18 05:26:59.674 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.674 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.674 -07 000000461 INF: FPGA: Recv ZSGSRD 30901
17-03-18 05:26:59.684 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.684 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.684 -07 000000467 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:26:59.694 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.694 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.694 -07 000000606 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:26:59.704 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.704 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.704 -07 000000474 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:26:59.714 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.714 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.714 -07 000000012 INF: FPGA: Recv ZSGSRD 30918
17-03-18 05:26:59.724 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.724 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.724 -07 000000474 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:26:59.734 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.734 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.734 -07 000000606 INF: FPGA: Recv ZSGSRD 30918
17-03-18 05:26:59.744 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.744 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:26:59.744 -07 000000461 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:26:59.754 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.754 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:26:59.754 -07 000000467 INF: FPGA: Recv ZPIEZORD 26651
17-03-18 05:26:59.764 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:26:59.764 -07 000000625 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 05:26:59.764 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30913 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30913 (-138.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 30901 (-138.0 uncal um), Max = 30926 (-138.2 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 05:26:59.764 -07 000000625 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30913, posNoise = 13, negNoise = 12
17-03-18 05:26:59.764 -07 000000625 INF: Z Motor: After move to -0.138915, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:26:59.764 -07 000000625 INF: Z Motor: Settle wait time = 1460 ms, measure time = 103 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:26:59.764 -07 000000625 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:26:59.814 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 05:26:59.814 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:26:59.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:26:59.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:26:59.814 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:26:59.814 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:26:59.814 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:26:59.814 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:26:59.814 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:26:59.814 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:26:59.824 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:26:59.824 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:26:59.834 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:26:59.834 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:26:59.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:26:59.874 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:00.174 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:00.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:00.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:00.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:27:00.214 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:00.214 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:00.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:27:00.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 05:27:00.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:00.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:00.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 05:27:00.414 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:00.414 -07 000000461 INF: Autofocus start
17-03-18 05:27:00.414 -07 000000461 INF: MeasureProfile start
17-03-18 05:27:00.414 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:00.424 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:00.424 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:00.424 -07 000000461 INF: MeasureProfile done
17-03-18 05:27:00.424 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:27:00.424 -07 000000461 INF: Autofocus finished
17-03-18 05:27:00.624 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:00.624 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:00.624 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138915021949391. ----------
17-03-18 05:27:00.634 -07 000000610 INF: Cycle	137	Tile	2	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:00.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28854, sync = True, waitForSettling = True)
17-03-18 05:27:00.634 -07 000000610 INF: Z Motor: Moving to -0.132085 mm, started at -0.138915 mm, distance = 6.83 um
17-03-18 05:27:00.634 -07 000000610 INF: FPGA: Xmit ZDACW 28854\n [Z Motor]
17-03-18 05:27:00.634 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:27:00.644 -07 000000610 INF: FPGA: 'ZDACW 28854' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:00.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:00.644 -07 000000012 INF: FPGA: Recv ZDACR 28854
17-03-18 05:27:00.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:00.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.804 -07 000000625 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:27:00.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:00.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.814 -07 000000461 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:27:00.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.824 -07 000000625 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:27:00.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.834 -07 000000012 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:27:00.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:27:00.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.854 -07 000000424 INF: FPGA: Recv ZSGSRD 29843
17-03-18 05:27:00.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.864 -07 000000606 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:27:00.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.874 -07 000000461 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:27:00.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:27:00.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:00.894 -07 000000606 INF: FPGA: Recv ZSGSRD 29849
17-03-18 05:27:00.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:00.904 -07 000000012 INF: FPGA: Recv ZPIEZORD 25273
17-03-18 05:27:00.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:00.914 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.0 V.
17-03-18 05:27:00.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29851 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29843 (-131.3 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:27:00.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29851, posNoise = 4, negNoise = 8
17-03-18 05:27:00.914 -07 000000610 INF: Z Motor: After move to -0.132085, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:00.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:27:00.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:00.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:00.914 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:00.914 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:00.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:00.914 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:00.914 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:00.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:00.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:00.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:00.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:00.914 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:00.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:00.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:00.924 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:00.924 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:00.934 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:27:00.934 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:27:00.934 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:27:00.934 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:27:00.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29031 150\n [Camera]
17-03-18 05:27:01.134 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:01.574 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:01.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:01.574 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:01.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:01.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:01.584 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:01.584 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:01.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:27:01.584 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:01.584 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:27:01.764 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:01.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:01.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29031 823
17-03-18 05:27:01.914 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:01.974 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:27:01.974 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:27:01.974 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:01.984 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:27:01.984 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:27:01.984 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:01.984 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:01.984 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:27:01.984 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:01.994 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:27:02.134 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:02.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:02.134 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:02.134 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:02.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:02.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:02.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:27:02.134 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:02.134 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:02.134 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:27:02.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:02.324 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:02.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29031 150' command took 2 ms to send, 1372 ms to get response, and 1383 ms overall
17-03-18 05:27:02.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:02.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132092508654841. ------
17-03-18 05:27:02.324 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:02.324 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13889 mm
17-03-18 05:27:02.324 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:02.334 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:02.334 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:27:02.334 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:02.334 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30340, sync = True, waitForSettling = False)
17-03-18 05:27:02.334 -07 000000479 INF: Z Motor: Moving to -0.138888 mm, started at -0.132093 mm, distance = -6.80 um
17-03-18 05:27:02.334 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:27:02.334 -07 000000625 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:27:02.344 -07 000000479 INF: FPGA: Xmit ZDACW 30340\n [Z Motor]
17-03-18 05:27:02.344 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:27:02.354 -07 000000479 INF: FPGA: 'ZDACW 30340' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:27:02.354 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:02.354 -07 000000012 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:27:02.364 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:27:02.364 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:02.364 -07 000000625 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:02.364 -07 000000625 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:27:02.364 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:02.364 -07 000000455 INF: FPGA: Recv ZDACR 30340
17-03-18 05:27:02.374 -07 000000479 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:02.374 -07 000000479 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:27:02.374 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:02.534 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:02.534 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 05:27:02.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:27:02.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:27:02.544 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:02.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:27:02.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:27:02.544 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:02.544 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:02.544 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:27:02.544 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:02.554 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:27:02.744 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:27:02.744 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:27:02.794 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:02.804 -07 000000479 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:27:02.804 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:27:02.804 -07 000000625 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:02.804 -07 000000625 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:27:02.804 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.167 mm/sec
17-03-18 05:27:03.344 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.983999,
17-03-18 05:27:03.754 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:03.754 -07 000000467 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:27:03.764 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:03.764 -07 000000625 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:03.794 -07 000000625 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:03.794 -07 000000625 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:03.794 -07 000000625 INF: Y Motor: Moved to 61.5625 after 1458 ms (table move)
17-03-18 05:27:03.794 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138888 mm (DAC = 30340)
17-03-18 05:27:03.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.794 -07 000000625 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:27:03.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:03.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.804 -07 000000012 INF: FPGA: Recv ZSGSRD 30897
17-03-18 05:27:03.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.814 -07 000000012 INF: FPGA: Recv ZSGSRD 30911
17-03-18 05:27:03.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.824 -07 000000606 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:27:03.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.834 -07 000000625 INF: FPGA: Recv ZSGSRD 30907
17-03-18 05:27:03.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30903
17-03-18 05:27:03.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.854 -07 000000012 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:27:03.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.864 -07 000000579 INF: FPGA: Recv ZSGSRD 30911
17-03-18 05:27:03.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.874 -07 000000579 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:27:03.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:03.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:03.884 -07 000000625 INF: FPGA: Recv ZSGSRD 30916
17-03-18 05:27:03.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.894 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:03.894 -07 000000474 INF: FPGA: Recv ZPIEZORD 26694
17-03-18 05:27:03.904 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:03.904 -07 000000424 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.3 V.
17-03-18 05:27:03.904 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30908 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30897 (-138.0 uncal um), Max = 30916 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:27:03.904 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30908, posNoise = 8, negNoise = 11
17-03-18 05:27:03.904 -07 000000424 INF: Z Motor: After move to -0.138888, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:03.904 -07 000000424 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:27:03.904 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:03.954 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:27:03.954 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:03.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:03.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:03.954 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:03.954 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:03.954 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:03.954 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:03.954 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:03.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:03.964 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:03.964 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:03.974 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:27:03.974 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:27:03.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:04.024 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:04.324 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:04.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:04.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:04.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 05:27:04.364 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:04.364 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:04.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 05:27:04.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:27:04.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:04.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:04.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:27:04.464 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:04.464 -07 000000424 INF: Autofocus start
17-03-18 05:27:04.464 -07 000000424 INF: MeasureProfile start
17-03-18 05:27:04.464 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:04.474 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:04.474 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:04.474 -07 000000424 INF: MeasureProfile done
17-03-18 05:27:04.474 -07 000000424 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:27:04.474 -07 000000424 INF: Autofocus finished
17-03-18 05:27:04.674 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:04.674 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:27:04.684 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138882900888683. ----------
17-03-18 05:27:04.684 -07 000000610 INF: Cycle	137	Tile	3	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:04.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28881, sync = True, waitForSettling = True)
17-03-18 05:27:04.684 -07 000000610 INF: Z Motor: Moving to -0.132209 mm, started at -0.138883 mm, distance = 6.67 um
17-03-18 05:27:04.684 -07 000000610 INF: FPGA: Xmit ZDACW 28881\n [Z Motor]
17-03-18 05:27:04.684 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:27:04.694 -07 000000610 INF: FPGA: 'ZDACW 28881' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:04.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:04.694 -07 000000012 INF: FPGA: Recv ZDACR 28881
17-03-18 05:27:04.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:04.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.854 -07 000000424 INF: FPGA: Recv ZSGSRD 29867
17-03-18 05:27:04.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:04.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29866
17-03-18 05:27:04.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.874 -07 000000625 INF: FPGA: Recv ZSGSRD 29870
17-03-18 05:27:04.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29874
17-03-18 05:27:04.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.894 -07 000000606 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:27:04.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.904 -07 000000461 INF: FPGA: Recv ZSGSRD 29864
17-03-18 05:27:04.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.914 -07 000000424 INF: FPGA: Recv ZSGSRD 29875
17-03-18 05:27:04.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:27:04.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.934 -07 000000012 INF: FPGA: Recv ZSGSRD 29865
17-03-18 05:27:04.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:04.944 -07 000000461 INF: FPGA: Recv ZSGSRD 29866
17-03-18 05:27:04.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:04.954 -07 000000012 INF: FPGA: Recv ZPIEZORD 25399
17-03-18 05:27:04.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:04.964 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.8 V.
17-03-18 05:27:04.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29868 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29862 (-131.4 uncal um), Max = 29875 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:04.964 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29868, posNoise = 7, negNoise = 6
17-03-18 05:27:04.964 -07 000000610 INF: Z Motor: After move to -0.132209, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:04.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 05:27:04.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:04.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:04.964 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:04.964 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:04.964 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:04.964 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:04.964 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:04.964 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:04.964 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:04.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:04.964 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:04.964 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:04.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:04.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:04.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:04.974 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:04.974 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:27:04.974 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:27:04.984 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:27:04.984 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:04.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29057 150\n [Camera]
17-03-18 05:27:05.184 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:05.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:05.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:05.624 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:05.624 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:05.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:27:05.624 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:05.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:05.624 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:05.624 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:05.624 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:27:05.814 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29057 823
17-03-18 05:27:05.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:06.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 05:27:06.004 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:27:06.004 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:06.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:27:06.004 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:27:06.004 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:06.004 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:06.004 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:06.004 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:27:06.014 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:27:06.174 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1186
17-03-18 05:27:06.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1186
17-03-18 05:27:06.174 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:06.174 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:06.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:27:06.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1186
17-03-18 05:27:06.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1186
17-03-18 05:27:06.184 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:06.184 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:06.184 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:27:06.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:06.364 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:06.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29057 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-18 05:27:06.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:06.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132201720261251. ------
17-03-18 05:27:06.374 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:06.374 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13866 mm
17-03-18 05:27:06.374 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:06.374 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:27:06.374 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30291, sync = True, waitForSettling = False)
17-03-18 05:27:06.374 -07 000000618 INF: Z Motor: Moving to -0.138663 mm, started at -0.132202 mm, distance = -6.46 um
17-03-18 05:27:06.374 -07 000000625 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:27:06.374 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:06.384 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:06.384 -07 000000618 INF: FPGA: Xmit ZDACW 30291\n [Z Motor]
17-03-18 05:27:06.384 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:27:06.394 -07 000000618 INF: FPGA: 'ZDACW 30291' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:27:06.394 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:06.394 -07 000000608 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:27:06.404 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:06.404 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:27:06.404 -07 000000625 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:06.404 -07 000000625 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:06.404 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:27:06.414 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:06.414 -07 000000474 INF: FPGA: Recv ZDACR 30291
17-03-18 05:27:06.424 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:27:06.424 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:27:06.424 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:06.584 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:27:06.584 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:27:06.584 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:06.584 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:27:06.584 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:27:06.584 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:06.584 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:06.584 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:27:06.584 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:27:06.594 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:27:06.604 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:06.604 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 05:27:06.764 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:06.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:06.794 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:27:06.794 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:27:06.844 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:06.854 -07 000000455 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:27:06.864 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:06.864 -07 000000625 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:06.864 -07 000000625 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:27:06.864 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 05:27:07.814 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:07.814 -07 000000579 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:27:07.824 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:07.824 -07 000000625 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:07.854 -07 000000625 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:07.854 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:27:07.854 -07 000000625 INF: Y Motor: Moved to 62.3945 after 1474 ms (table move)
17-03-18 05:27:07.854 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138663 mm (DAC = 30291)
17-03-18 05:27:07.854 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.854 -07 000000625 INF: FPGA: Recv ZSGSRD 30871
17-03-18 05:27:07.864 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:07.864 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.864 -07 000000625 INF: FPGA: Recv ZSGSRD 30875
17-03-18 05:27:07.874 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.874 -07 000000625 INF: FPGA: Recv ZSGSRD 30871
17-03-18 05:27:07.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.884 -07 000000579 INF: FPGA: Recv ZSGSRD 30873
17-03-18 05:27:07.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.894 -07 000000424 INF: FPGA: Recv ZSGSRD 30878
17-03-18 05:27:07.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.904 -07 000000012 INF: FPGA: Recv ZSGSRD 30876
17-03-18 05:27:07.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.914 -07 000000625 INF: FPGA: Recv ZSGSRD 30882
17-03-18 05:27:07.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.924 -07 000000625 INF: FPGA: Recv ZSGSRD 30870
17-03-18 05:27:07.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.934 -07 000000455 INF: FPGA: Recv ZSGSRD 30876
17-03-18 05:27:07.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:07.944 -07 000000455 INF: FPGA: Recv ZSGSRD 30869
17-03-18 05:27:07.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.954 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:07.954 -07 000000467 INF: FPGA: Recv ZPIEZORD 26682
17-03-18 05:27:07.964 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:07.964 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.2 V.
17-03-18 05:27:07.964 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30874 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30874 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30869 (-137.8 uncal um), Max = 30882 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:07.964 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30874, posNoise = 8, negNoise = 5
17-03-18 05:27:07.964 -07 000000512 INF: Z Motor: After move to -0.138663, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:07.964 -07 000000512 INF: Z Motor: Settle wait time = 1477 ms, measure time = 106 ms (allowed 150 ms), total time = 1583 ms
17-03-18 05:27:07.964 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:08.014 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 05:27:08.014 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:08.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:08.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:08.014 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:08.014 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:08.014 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:08.014 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:08.014 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:27:08.014 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:08.024 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:08.024 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:08.034 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:27:08.034 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:27:08.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:08.084 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:08.384 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:08.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:08.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:08.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) start.
17-03-18 05:27:08.424 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:08.424 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:08.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:27:08.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201550776, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:27:08.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:08.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:08.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:27:08.524 -07 000000625 INF: Autofocus start
17-03-18 05:27:08.524 -07 000000625 INF: MeasureProfile start
17-03-18 05:27:08.524 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:08.534 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:08.534 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:27:08.534 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:08.544 -07 000000625 INF: MeasureProfile done
17-03-18 05:27:08.544 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:27:08.544 -07 000000625 INF: Autofocus finished
17-03-18 05:27:08.704 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.985358,
17-03-18 05:27:08.734 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:08.734 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:27:08.734 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138664477675863. ----------
17-03-18 05:27:08.744 -07 000000610 INF: Cycle	137	Tile	4	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:08.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28815, sync = True, waitForSettling = True)
17-03-18 05:27:08.744 -07 000000610 INF: Z Motor: Moving to -0.131907 mm, started at -0.138664 mm, distance = 6.76 um
17-03-18 05:27:08.744 -07 000000610 INF: FPGA: Xmit ZDACW 28815\n [Z Motor]
17-03-18 05:27:08.744 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:27:08.754 -07 000000610 INF: FPGA: 'ZDACW 28815' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:08.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:08.754 -07 000000512 INF: FPGA: Recv ZDACR 28815
17-03-18 05:27:08.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:08.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.914 -07 000000455 INF: FPGA: Recv ZSGSRD 29817
17-03-18 05:27:08.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:08.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.924 -07 000000512 INF: FPGA: Recv ZSGSRD 29826
17-03-18 05:27:08.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.934 -07 000000012 INF: FPGA: Recv ZSGSRD 29822
17-03-18 05:27:08.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.944 -07 000000579 INF: FPGA: Recv ZSGSRD 29822
17-03-18 05:27:08.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.954 -07 000000012 INF: FPGA: Recv ZSGSRD 29823
17-03-18 05:27:08.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.964 -07 000000424 INF: FPGA: Recv ZSGSRD 29817
17-03-18 05:27:08.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.974 -07 000000455 INF: FPGA: Recv ZSGSRD 29818
17-03-18 05:27:08.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.984 -07 000000579 INF: FPGA: Recv ZSGSRD 29825
17-03-18 05:27:08.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:08.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:08.994 -07 000000455 INF: FPGA: Recv ZSGSRD 29824
17-03-18 05:27:09.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:09.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:09.004 -07 000000579 INF: FPGA: Recv ZSGSRD 29822
17-03-18 05:27:09.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:09.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:09.014 -07 000000461 INF: FPGA: Recv ZPIEZORD 25295
17-03-18 05:27:09.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:09.024 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.9 V.
17-03-18 05:27:09.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29817 (-131.1 uncal um), Max = 29826 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:09.024 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 4, negNoise = 5
17-03-18 05:27:09.024 -07 000000610 INF: Z Motor: After move to -0.131907, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:09.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:27:09.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:09.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:09.024 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:09.024 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:09.024 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:09.024 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:09.024 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:09.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:09.024 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:09.024 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:09.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:09.034 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:09.034 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:09.034 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:09.034 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:09.034 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:09.044 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:27:09.044 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:09.044 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:27:09.044 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:09.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28992 150\n [Camera]
17-03-18 05:27:09.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:09.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:09.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:09.684 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:09.684 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:09.684 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:27:09.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:09.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:09.684 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:09.684 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:09.684 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:27:09.874 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28992 825
17-03-18 05:27:10.024 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:10.064 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:27:10.064 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:27:10.064 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:10.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:27:10.064 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:27:10.064 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:10.074 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:10.074 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:27:10.074 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:10.074 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:27:10.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:10.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:10.234 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:10.234 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:10.234 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:27:10.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:10.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:10.244 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:10.244 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:10.244 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:27:10.424 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:10.424 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:10.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28992 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:27:10.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:10.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.13190620650273. ------
17-03-18 05:27:10.434 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:10.434 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13860 mm
17-03-18 05:27:10.434 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:10.434 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:27:10.434 -07 000000461 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 05:27:10.434 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:10.434 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30277, sync = True, waitForSettling = False)
17-03-18 05:27:10.444 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:10.444 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:10.444 -07 000000512 INF: Z Motor: Moving to -0.138599 mm, started at -0.131906 mm, distance = -6.69 um
17-03-18 05:27:10.444 -07 000000012 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:27:10.454 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:27:10.454 -07 000000461 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:10.454 -07 000000461 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:10.454 -07 000000461 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:27:10.454 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:10.464 -07 000000512 INF: FPGA: Xmit ZDACW 30277\n [Z Motor]
17-03-18 05:27:10.464 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:27:10.474 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:10.474 -07 000000512 INF: FPGA: 'ZDACW 30277' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:27:10.484 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:10.484 -07 000000608 INF: FPGA: Recv ZDACR 30277
17-03-18 05:27:10.494 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:10.494 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:27:10.644 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:27:10.644 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:27:10.644 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:10.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:27:10.644 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:27:10.644 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:10.644 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:10.644 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:27:10.644 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:27:10.654 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:27:10.654 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:10.654 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:27:10.854 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:27:10.854 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 05:27:10.904 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:10.904 -07 000000625 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:27:10.914 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:10.914 -07 000000461 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:10.914 -07 000000461 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:27:10.914 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.095 mm/sec
17-03-18 05:27:11.764 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:11.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:11.864 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:11.864 -07 000000012 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:27:11.874 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:11.874 -07 000000461 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:11.904 -07 000000461 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:11.904 -07 000000461 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:11.904 -07 000000461 INF: Y Motor: Moved to 63.2222 after 1464 ms (table move)
17-03-18 05:27:11.904 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138599 mm (DAC = 30277)
17-03-18 05:27:11.904 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.914 -07 000000424 INF: FPGA: Recv ZSGSRD 30869
17-03-18 05:27:11.914 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:27:11.914 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.914 -07 000000424 INF: FPGA: Recv ZSGSRD 30866
17-03-18 05:27:11.924 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.924 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.924 -07 000000512 INF: FPGA: Recv ZSGSRD 30858
17-03-18 05:27:11.934 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.934 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.934 -07 000000608 INF: FPGA: Recv ZSGSRD 30860
17-03-18 05:27:11.944 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.944 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.944 -07 000000479 INF: FPGA: Recv ZSGSRD 30873
17-03-18 05:27:11.954 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.954 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.954 -07 000000461 INF: FPGA: Recv ZSGSRD 30870
17-03-18 05:27:11.964 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.964 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.964 -07 000000467 INF: FPGA: Recv ZSGSRD 30866
17-03-18 05:27:11.974 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.974 -07 000000424 INF: FPGA: Recv ZSGSRD 30859
17-03-18 05:27:11.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.984 -07 000000569 INF: FPGA: Recv ZSGSRD 30860
17-03-18 05:27:11.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:11.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:11.994 -07 000000012 INF: FPGA: Recv ZSGSRD 30863
17-03-18 05:27:12.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:12.004 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:12.004 -07 000000012 INF: FPGA: Recv ZPIEZORD 26671
17-03-18 05:27:12.014 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:12.014 -07 000000579 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -9.2 V.
17-03-18 05:27:12.014 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30864 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30864 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30858 (-137.8 uncal um), Max = 30873 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:12.014 -07 000000579 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30864, posNoise = 9, negNoise = 6
17-03-18 05:27:12.014 -07 000000579 INF: Z Motor: After move to -0.138599, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:12.014 -07 000000579 INF: Z Motor: Settle wait time = 1465 ms, measure time = 103 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:27:12.014 -07 000000579 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:12.064 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:27:12.064 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:12.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:12.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:12.064 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:12.064 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:12.064 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:12.064 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:12.064 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:27:12.064 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:12.074 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:12.074 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:12.084 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:27:12.084 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:27:12.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:12.124 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:12.424 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:12.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:12.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:12.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 05:27:12.464 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:12.464 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:12.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:27:12.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:27:12.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:12.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:12.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:27:12.564 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:12.564 -07 000000474 INF: Autofocus start
17-03-18 05:27:12.564 -07 000000474 INF: MeasureProfile start
17-03-18 05:27:12.564 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:12.574 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:12.574 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:12.574 -07 000000474 INF: MeasureProfile done
17-03-18 05:27:12.574 -07 000000474 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 05:27:12.574 -07 000000474 INF: Autofocus finished
17-03-18 05:27:12.774 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:12.774 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 05:27:12.784 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.138600235554445. ----------
17-03-18 05:27:12.784 -07 000000610 INF: Cycle	137	Tile	5	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:12.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28704, sync = True, waitForSettling = True)
17-03-18 05:27:12.784 -07 000000610 INF: Z Motor: Moving to -0.131398 mm, started at -0.138600 mm, distance = 7.20 um
17-03-18 05:27:12.784 -07 000000610 INF: FPGA: Xmit ZDACW 28704\n [Z Motor]
17-03-18 05:27:12.784 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:27:12.794 -07 000000610 INF: FPGA: 'ZDACW 28704' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:27:12.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:12.794 -07 000000625 INF: FPGA: Recv ZDACR 28704
17-03-18 05:27:12.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:12.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:12.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:12.954 -07 000000012 INF: FPGA: Recv ZSGSRD 29741
17-03-18 05:27:12.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:12.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:12.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:27:12.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:12.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:12.974 -07 000000608 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:27:12.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:12.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:12.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29742
17-03-18 05:27:12.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:12.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:12.994 -07 000000012 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:27:13.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:13.004 -07 000000625 INF: FPGA: Recv ZSGSRD 29746
17-03-18 05:27:13.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:13.014 -07 000000012 INF: FPGA: Recv ZSGSRD 29751
17-03-18 05:27:13.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:13.024 -07 000000455 INF: FPGA: Recv ZSGSRD 29741
17-03-18 05:27:13.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:13.034 -07 000000012 INF: FPGA: Recv ZSGSRD 29740
17-03-18 05:27:13.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:13.044 -07 000000625 INF: FPGA: Recv ZSGSRD 29747
17-03-18 05:27:13.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:13.054 -07 000000608 INF: FPGA: Recv ZPIEZORD 25179
17-03-18 05:27:13.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:13.064 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -10.0 V.
17-03-18 05:27:13.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29744 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29743 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29740 (-130.6 uncal um), Max = 29751 (-130.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:27:13.064 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29744, posNoise = 7, negNoise = 4
17-03-18 05:27:13.064 -07 000000610 INF: Z Motor: After move to -0.131398, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:13.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:27:13.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:13.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:13.064 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:13.064 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:13.064 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:13.064 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:13.064 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:13.064 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:13.064 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:27:13.064 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:13.064 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:13.064 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:13.074 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:13.074 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:13.074 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:13.074 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:13.084 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:27:13.084 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:13.084 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:27:13.084 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:13.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28880 150\n [Camera]
17-03-18 05:27:13.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:13.724 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:13.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:13.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:13.724 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:13.724 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:27:13.724 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:13.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:13.724 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:13.724 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:13.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:27:13.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28880 823
17-03-18 05:27:14.064 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:14.084 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.016692,
17-03-18 05:27:14.114 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:27:14.114 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:27:14.114 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:14.114 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:27:14.114 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:27:14.114 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:14.114 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:14.114 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:27:14.114 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:14.124 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:27:14.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:14.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:14.274 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:14.274 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:14.274 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:27:14.284 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:14.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:14.284 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:14.284 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:14.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:27:14.464 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:27:14.464 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:14.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28880 150' command took 2 ms to send, 1377 ms to get response, and 1384 ms overall
17-03-18 05:27:14.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:14.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.131405117955673. ------
17-03-18 05:27:14.474 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13780 mm
17-03-18 05:27:14.474 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:14.474 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:14.474 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:27:14.474 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 05:27:14.474 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30102, sync = True, waitForSettling = False)
17-03-18 05:27:14.474 -07 000000625 INF: Z Motor: Moving to -0.137798 mm, started at -0.131405 mm, distance = -6.39 um
17-03-18 05:27:14.484 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:14.494 -07 000000625 INF: FPGA: Xmit ZDACW 30102\n [Z Motor]
17-03-18 05:27:14.674 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:27:14.674 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:27:14.674 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:14.674 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:14.674 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:27:14.674 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:27:14.674 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:14.684 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:27:14.684 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:27:14.684 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:27:14.694 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:14.694 -07 000000474 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:27:14.694 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:27:14.694 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 223 ms overall
17-03-18 05:27:14.694 -07 000000625 INF: FPGA: 'ZDACW 30102' command took 0 ms to send, 198 ms to get response, and 220 ms overall
17-03-18 05:27:14.694 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 221 ms overall
17-03-18 05:27:14.694 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:14.694 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:14.704 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:14.704 -07 000000608 INF: FPGA: Recv ZDACR 30102
17-03-18 05:27:14.704 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:27:14.704 -07 000000625 INF: Z Motor: MoveAbsStepped took 225 ms (did NOT wait for settling yet))
17-03-18 05:27:14.704 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:14.704 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:27:14.714 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:14.904 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:14.904 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 05:27:15.084 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:27:15.084 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 05:27:15.134 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:15.144 -07 000000618 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:27:15.144 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:27:15.144 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:15.144 -07 000000479 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:27:15.144 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.194 mm/sec
17-03-18 05:27:16.094 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:16.094 -07 000000474 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:27:16.104 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:16.104 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:16.124 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:16.124 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:16.134 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1652 ms (table move)
17-03-18 05:27:16.134 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137798 mm (DAC = 30102)
17-03-18 05:27:16.134 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30739
17-03-18 05:27:16.144 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:16.144 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.144 -07 000000608 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:27:16.154 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.154 -07 000000625 INF: FPGA: Recv ZSGSRD 30734
17-03-18 05:27:16.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:27:16.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.174 -07 000000625 INF: FPGA: Recv ZSGSRD 30738
17-03-18 05:27:16.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.184 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.184 -07 000000618 INF: FPGA: Recv ZSGSRD 30743
17-03-18 05:27:16.194 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.194 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.194 -07 000000474 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:27:16.204 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.204 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.204 -07 000000608 INF: FPGA: Recv ZSGSRD 30743
17-03-18 05:27:16.214 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.214 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30747
17-03-18 05:27:16.224 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.224 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:16.224 -07 000000479 INF: FPGA: Recv ZSGSRD 30747
17-03-18 05:27:16.234 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.234 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:16.234 -07 000000618 INF: FPGA: Recv ZPIEZORD 26522
17-03-18 05:27:16.244 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:16.244 -07 000000012 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.3 V.
17-03-18 05:27:16.244 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30742 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30743 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30734 (-137.0 uncal um), Max = 30748 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:27:16.244 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30742, posNoise = 6, negNoise = 8
17-03-18 05:27:16.244 -07 000000012 INF: Z Motor: After move to -0.137798, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:16.244 -07 000000012 INF: Z Motor: Settle wait time = 1655 ms, measure time = 107 ms (allowed 150 ms), total time = 1762 ms
17-03-18 05:27:16.244 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:16.294 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1814 ms
17-03-18 05:27:16.294 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:16.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:16.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:16.294 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:16.294 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:16.294 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:16.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:16.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:27:16.294 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:16.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:16.304 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:16.304 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:16.304 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:27:16.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:16.354 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:16.654 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:16.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:16.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:16.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-18 05:27:16.694 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:16.694 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:16.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:27:16.764 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:16.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:27:16.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:16.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:16.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:27:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:16.794 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:16.794 -07 000000012 INF: Autofocus start
17-03-18 05:27:16.794 -07 000000012 INF: MeasureProfile start
17-03-18 05:27:16.794 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:16.804 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:16.804 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:16.804 -07 000000012 INF: MeasureProfile done
17-03-18 05:27:16.804 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:27:16.804 -07 000000012 INF: Autofocus finished
17-03-18 05:27:17.004 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:17.004 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:27:17.004 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.13781648167315. ----------
17-03-18 05:27:17.004 -07 000000610 INF: Cycle	137	Tile	6	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:17.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = True)
17-03-18 05:27:17.014 -07 000000610 INF: Z Motor: Moving to -0.130964 mm, started at -0.137816 mm, distance = 6.85 um
17-03-18 05:27:17.014 -07 000000610 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-18 05:27:17.014 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:27:17.024 -07 000000610 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:17.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:17.024 -07 000000569 INF: FPGA: Recv ZDACR 28609
17-03-18 05:27:17.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:17.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.184 -07 000000479 INF: FPGA: Recv ZSGSRD 29676
17-03-18 05:27:17.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:17.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.194 -07 000000625 INF: FPGA: Recv ZSGSRD 29675
17-03-18 05:27:17.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29668
17-03-18 05:27:17.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.214 -07 000000606 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:27:17.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29678
17-03-18 05:27:17.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.234 -07 000000479 INF: FPGA: Recv ZSGSRD 29677
17-03-18 05:27:17.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.244 -07 000000569 INF: FPGA: Recv ZSGSRD 29683
17-03-18 05:27:17.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.254 -07 000000474 INF: FPGA: Recv ZSGSRD 29673
17-03-18 05:27:17.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.264 -07 000000608 INF: FPGA: Recv ZSGSRD 29674
17-03-18 05:27:17.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:17.274 -07 000000474 INF: FPGA: Recv ZSGSRD 29675
17-03-18 05:27:17.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:17.284 -07 000000479 INF: FPGA: Recv ZPIEZORD 25127
17-03-18 05:27:17.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:17.294 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -10.0 V.
17-03-18 05:27:17.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29668 (-130.1 uncal um), Max = 29683 (-130.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:27:17.294 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 7, negNoise = 8
17-03-18 05:27:17.294 -07 000000610 INF: Z Motor: After move to -0.130964, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:17.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:27:17.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:17.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:17.294 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:17.294 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:17.294 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:17.294 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:17.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:17.294 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:17.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:17.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:17.294 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:17.294 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:17.304 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:17.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:17.304 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:27:17.304 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:17.304 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:27:17.304 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:27:17.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:27:17.304 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:17.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28786 150\n [Camera]
17-03-18 05:27:17.514 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:17.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:17.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:17.954 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:17.954 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:17.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:27:17.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:17.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:17.954 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:17.954 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:17.954 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:27:18.144 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28786 823
17-03-18 05:27:18.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:18.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:27:18.344 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:27:18.344 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:18.344 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:27:18.344 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:27:18.344 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:18.354 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:18.354 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:27:18.354 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:18.354 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:27:18.504 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:18.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:18.504 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:18.504 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:18.504 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:27:18.514 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:18.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:18.514 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:18.514 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:18.514 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 05:27:18.694 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:18.694 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:18.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28786 150' command took 2 ms to send, 1377 ms to get response, and 1384 ms overall
17-03-18 05:27:18.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:18.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.130968271530033. ------
17-03-18 05:27:18.844 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13743 mm
17-03-18 05:27:18.844 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:18.844 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:27:18.844 -07 000000606 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:27:18.844 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30022, sync = True, waitForSettling = False)
17-03-18 05:27:18.844 -07 000000012 INF: Z Motor: Moving to -0.137432 mm, started at -0.130968 mm, distance = -6.46 um
17-03-18 05:27:18.854 -07 000000012 INF: FPGA: Xmit ZDACW 30022\n [Z Motor]
17-03-18 05:27:18.864 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:18.874 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:18.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 417 ms.
17-03-18 05:27:18.924 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 05:27:18.924 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:18.924 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 416 ms.
17-03-18 05:27:18.924 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:27:18.924 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:18.934 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:18.934 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:27:18.934 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 426 ms.
17-03-18 05:27:18.934 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 427 ms.
17-03-18 05:27:18.944 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:27:18.944 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:18.944 -07 000000012 INF: FPGA: 'ZDACW 30022' command took 0 ms to send, 83 ms to get response, and 93 ms overall
17-03-18 05:27:18.944 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 73 ms to get response, and 97 ms overall
17-03-18 05:27:18.944 -07 000000569 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:27:18.944 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 67 ms to get response, and 97 ms overall
17-03-18 05:27:18.944 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:18.944 -07 000000606 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:18.944 -07 000000606 INF: Y Motor: Moving 1339 steps-14
17-03-18 05:27:18.944 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:18.954 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:18.954 -07 000000569 INF: FPGA: Recv ZDACR 30022
17-03-18 05:27:18.954 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:27:18.954 -07 000000012 INF: Z Motor: MoveAbsStepped took 100 ms (did NOT wait for settling yet))
17-03-18 05:27:18.964 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:19.154 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:19.154 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 208 ms overall
17-03-18 05:27:19.334 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:27:19.334 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 05:27:19.384 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:19.394 -07 000000608 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:27:19.394 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:27:19.394 -07 000000606 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:19.394 -07 000000606 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:27:19.394 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.146 mm/sec
17-03-18 05:27:19.474 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.012614,
17-03-18 05:27:20.344 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:20.344 -07 000000569 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:27:20.354 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:20.354 -07 000000606 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:20.384 -07 000000606 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:20.384 -07 000000606 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:20.384 -07 000000606 INF: Y Motor: Moved to 64.8774 after 1533 ms (table move)
17-03-18 05:27:20.384 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137432 mm (DAC = 30022)
17-03-18 05:27:20.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.384 -07 000000512 INF: FPGA: Recv ZSGSRD 30683
17-03-18 05:27:20.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:20.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30682
17-03-18 05:27:20.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.404 -07 000000479 INF: FPGA: Recv ZSGSRD 30689
17-03-18 05:27:20.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.414 -07 000000608 INF: FPGA: Recv ZSGSRD 30684
17-03-18 05:27:20.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30681
17-03-18 05:27:20.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.434 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.434 -07 000000012 INF: FPGA: Recv ZSGSRD 30682
17-03-18 05:27:20.444 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.444 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.444 -07 000000479 INF: FPGA: Recv ZSGSRD 30681
17-03-18 05:27:20.454 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.454 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.454 -07 000000012 INF: FPGA: Recv ZSGSRD 30688
17-03-18 05:27:20.464 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.464 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.464 -07 000000569 INF: FPGA: Recv ZSGSRD 30681
17-03-18 05:27:20.474 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.474 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:20.474 -07 000000012 INF: FPGA: Recv ZSGSRD 30684
17-03-18 05:27:20.484 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.484 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:20.484 -07 000000479 INF: FPGA: Recv ZPIEZORD 26491
17-03-18 05:27:20.494 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:20.494 -07 000000618 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -9.2 V.
17-03-18 05:27:20.494 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30684 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30682 (-136.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30681 (-136.6 uncal um), Max = 30689 (-136.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:27:20.494 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30684, posNoise = 5, negNoise = 3
17-03-18 05:27:20.494 -07 000000618 INF: Z Motor: After move to -0.137432, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:20.494 -07 000000618 INF: Z Motor: Settle wait time = 1535 ms, measure time = 105 ms (allowed 150 ms), total time = 1640 ms
17-03-18 05:27:20.494 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:20.544 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1694 ms
17-03-18 05:27:20.544 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:20.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:20.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:20.544 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:20.544 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:20.544 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:20.544 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:20.544 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:27:20.554 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:20.554 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:20.554 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:20.554 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:20.564 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:27:20.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:20.614 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:20.914 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:20.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:20.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:20.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:27:20.944 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:20.944 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:20.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:27:21.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:27:21.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:21.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:21.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:27:21.044 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:21.044 -07 000000461 INF: Autofocus start
17-03-18 05:27:21.044 -07 000000461 INF: MeasureProfile start
17-03-18 05:27:21.044 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:21.054 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:21.054 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:21.054 -07 000000461 INF: MeasureProfile done
17-03-18 05:27:21.054 -07 000000461 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:27:21.054 -07 000000461 INF: Autofocus finished
17-03-18 05:27:21.254 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:21.254 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:21.254 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137443877368928. ----------
17-03-18 05:27:21.254 -07 000000610 INF: Cycle	137	Tile	7	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:21.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28546, sync = True, waitForSettling = True)
17-03-18 05:27:21.264 -07 000000610 INF: Z Motor: Moving to -0.130675 mm, started at -0.137444 mm, distance = 6.77 um
17-03-18 05:27:21.264 -07 000000610 INF: FPGA: Xmit ZDACW 28546\n [Z Motor]
17-03-18 05:27:21.264 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:27:21.274 -07 000000610 INF: FPGA: 'ZDACW 28546' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:21.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:21.274 -07 000000012 INF: FPGA: Recv ZDACR 28546
17-03-18 05:27:21.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:21.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.434 -07 000000479 INF: FPGA: Recv ZSGSRD 29633
17-03-18 05:27:21.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:21.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.444 -07 000000618 INF: FPGA: Recv ZSGSRD 29629
17-03-18 05:27:21.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29629
17-03-18 05:27:21.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29631
17-03-18 05:27:21.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29631
17-03-18 05:27:21.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.484 -07 000000569 INF: FPGA: Recv ZSGSRD 29636
17-03-18 05:27:21.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29625
17-03-18 05:27:21.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.504 -07 000000012 INF: FPGA: Recv ZSGSRD 29631
17-03-18 05:27:21.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29634
17-03-18 05:27:21.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:21.524 -07 000000461 INF: FPGA: Recv ZSGSRD 29631
17-03-18 05:27:21.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:21.534 -07 000000608 INF: FPGA: Recv ZPIEZORD 25119
17-03-18 05:27:21.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:21.544 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.9 V.
17-03-18 05:27:21.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29631 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29631 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29625 (-129.9 uncal um), Max = 29636 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:21.544 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29631, posNoise = 5, negNoise = 6
17-03-18 05:27:21.544 -07 000000610 INF: Z Motor: After move to -0.130675, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:21.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:27:21.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:21.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:21.544 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:21.544 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:21.544 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:21.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:21.544 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:21.544 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:21.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 05:27:21.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:21.544 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:21.544 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:21.554 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:21.554 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:21.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:21.554 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:21.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:27:21.564 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:27:21.564 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:27:21.564 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:27:21.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28722 150\n [Camera]
17-03-18 05:27:21.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:21.764 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:21.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:22.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:22.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:22.204 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:22.204 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:22.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:22.204 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:22.204 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:22.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:27:22.214 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:22.214 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:27:22.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28722 823
17-03-18 05:27:22.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:22.584 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:27:22.584 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:27:22.584 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:22.584 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:22.594 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:27:22.594 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:27:22.594 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:22.594 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:22.594 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:27:22.594 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:27:22.754 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:22.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:22.754 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:22.754 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:22.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:22.764 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:22.884 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:22.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 05:27:22.884 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:22.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 05:27:22.944 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:27:22.944 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:22.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28722 150' command took 2 ms to send, 1378 ms to get response, and 1383 ms overall
17-03-18 05:27:22.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:22.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130679181983654. ------
17-03-18 05:27:22.954 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13741 mm
17-03-18 05:27:22.954 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:22.954 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:22.954 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:27:22.954 -07 000000455 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 05:27:22.954 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30018, sync = True, waitForSettling = False)
17-03-18 05:27:22.954 -07 000000012 INF: Z Motor: Moving to -0.137414 mm, started at -0.130679 mm, distance = -6.73 um
17-03-18 05:27:22.964 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:22.974 -07 000000012 INF: FPGA: Xmit ZDACW 30018\n [Z Motor]
17-03-18 05:27:23.284 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:27:23.284 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:27:23.284 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:23.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:27:23.284 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:27:23.284 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:23.284 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:23.294 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:23.294 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 05:27:23.294 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-18 05:27:23.304 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:23.304 -07 000000569 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:27:23.304 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:27:23.304 -07 000000012 INF: FPGA: 'ZDACW 30018' command took 0 ms to send, 328 ms to get response, and 351 ms overall
17-03-18 05:27:23.304 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 348 ms to get response, and 354 ms overall
17-03-18 05:27:23.304 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 338 ms to get response, and 351 ms overall
17-03-18 05:27:23.304 -07 000000455 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:23.314 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:23.314 -07 000000569 INF: FPGA: Recv ZDACR 30018
17-03-18 05:27:23.314 -07 000000455 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:23.314 -07 000000455 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:27:23.324 -07 000000012 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:23.324 -07 000000012 INF: Z Motor: MoveAbsStepped took 362 ms (did NOT wait for settling yet))
17-03-18 05:27:23.324 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:23.334 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:23.524 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:23.524 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 05:27:23.714 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:27:23.714 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 05:27:23.754 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:23.764 -07 000000569 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:27:23.764 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:27:23.764 -07 000000455 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:23.764 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:27:23.764 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:27:24.714 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:24.714 -07 000000012 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:27:24.724 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.724 -07 000000455 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:24.754 -07 000000455 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:24.754 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:24.754 -07 000000455 INF: Y Motor: Moved to 65.7129 after 1802 ms (table move)
17-03-18 05:27:24.764 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137414 mm (DAC = 30018)
17-03-18 05:27:24.764 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.764 -07 000000012 INF: FPGA: Recv ZSGSRD 30673
17-03-18 05:27:24.774 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:24.774 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.774 -07 000000618 INF: FPGA: Recv ZSGSRD 30675
17-03-18 05:27:24.784 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.784 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.784 -07 000000455 INF: FPGA: Recv ZSGSRD 30678
17-03-18 05:27:24.794 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.794 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.794 -07 000000012 INF: FPGA: Recv ZSGSRD 30678
17-03-18 05:27:24.804 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.804 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.814 -07 000000618 INF: FPGA: Recv ZSGSRD 30678
17-03-18 05:27:24.814 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 05:27:24.814 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.814 -07 000000455 INF: FPGA: Recv ZSGSRD 30673
17-03-18 05:27:24.824 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:24.824 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.824 -07 000000618 INF: FPGA: Recv ZSGSRD 30687
17-03-18 05:27:24.834 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.844 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.844 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.977204,
17-03-18 05:27:24.844 -07 000000625 INF: FPGA: Recv ZSGSRD 30681
17-03-18 05:27:24.854 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:24.854 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.854 -07 000000618 INF: FPGA: Recv ZSGSRD 30680
17-03-18 05:27:24.864 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.874 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:24.874 -07 000000512 INF: FPGA: Recv ZSGSRD 30685
17-03-18 05:27:24.884 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:24.884 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:24.884 -07 000000569 INF: FPGA: Recv ZPIEZORD 26533
17-03-18 05:27:24.894 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:24.894 -07 000000479 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -9.1 V.
17-03-18 05:27:24.894 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30679 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30678 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30673 (-136.6 uncal um), Max = 30687 (-136.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:24.894 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30679, posNoise = 8, negNoise = 6
17-03-18 05:27:24.894 -07 000000479 INF: Z Motor: After move to -0.137414, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:24.894 -07 000000479 INF: Z Motor: Settle wait time = 1805 ms, measure time = 128 ms (allowed 150 ms), total time = 1933 ms
17-03-18 05:27:24.894 -07 000000479 INF: Z Motor: Waiting extra 22 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:24.924 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1965 ms
17-03-18 05:27:24.924 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:24.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:24.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:24.924 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:24.924 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:24.924 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:24.924 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:24.924 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:24.924 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:24.934 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:24.934 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:24.934 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:24.934 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:27:24.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:24.984 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:25.284 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:25.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:25.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:25.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608160040, 0x0, 559484976) start.
17-03-18 05:27:25.324 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:25.324 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:25.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:27:25.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608160040, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:27:25.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:25.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:25.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:27:25.424 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:25.424 -07 000000012 INF: Autofocus start
17-03-18 05:27:25.424 -07 000000012 INF: MeasureProfile start
17-03-18 05:27:25.424 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:25.434 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:25.434 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:25.434 -07 000000012 INF: MeasureProfile done
17-03-18 05:27:25.434 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:27:25.434 -07 000000012 INF: Autofocus finished
17-03-18 05:27:25.634 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:25.634 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:25.634 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137411756308219. ----------
17-03-18 05:27:25.634 -07 000000610 INF: Cycle	137	Tile	8	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:25.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28525, sync = True, waitForSettling = True)
17-03-18 05:27:25.644 -07 000000610 INF: Z Motor: Moving to -0.130579 mm, started at -0.137412 mm, distance = 6.83 um
17-03-18 05:27:25.644 -07 000000610 INF: FPGA: Xmit ZDACW 28525\n [Z Motor]
17-03-18 05:27:25.644 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:27:25.654 -07 000000610 INF: FPGA: 'ZDACW 28525' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:25.654 -07 000000467 INF: FPGA: Recv ZDACR 28525
17-03-18 05:27:25.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:25.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.814 -07 000000512 INF: FPGA: Recv ZSGSRD 29620
17-03-18 05:27:25.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:25.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.824 -07 000000608 INF: FPGA: Recv ZSGSRD 29616
17-03-18 05:27:25.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.834 -07 000000625 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:27:25.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:27:25.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.854 -07 000000455 INF: FPGA: Recv ZSGSRD 29615
17-03-18 05:27:25.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.864 -07 000000608 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:27:25.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.874 -07 000000625 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:27:25.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.884 -07 000000579 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:27:25.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.894 -07 000000455 INF: FPGA: Recv ZSGSRD 29610
17-03-18 05:27:25.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:25.904 -07 000000608 INF: FPGA: Recv ZSGSRD 29611
17-03-18 05:27:25.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:25.914 -07 000000625 INF: FPGA: Recv ZPIEZORD 25105
17-03-18 05:27:25.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:25.924 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.9 V.
17-03-18 05:27:25.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29610 (-129.8 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:25.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 4, negNoise = 6
17-03-18 05:27:25.924 -07 000000610 INF: Z Motor: After move to -0.130579, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:25.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:27:25.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:25.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:25.924 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:25.924 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:25.924 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:25.924 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:25.924 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:25.924 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:25.924 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:25.924 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:25.924 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:25.924 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:25.934 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:25.934 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:25.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:27:25.934 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:25.944 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:27:25.944 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:27:25.944 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:27:25.944 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:27:25.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28702 150\n [Camera]
17-03-18 05:27:26.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:26.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:26.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:26.584 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:26.594 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:26.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:26.594 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:26.594 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:26.594 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 05:27:26.594 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:26.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:27:26.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:26.784 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28702 825
17-03-18 05:27:26.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:26.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:27:26.964 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:27:26.964 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:26.974 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:26.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:27:26.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:27:26.974 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:26.974 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:27:26.984 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:26.984 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:27:27.144 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:27.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:27.144 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:27.144 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:27.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:27.144 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:27.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 05:27:27.144 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:27.144 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:27.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:27:27.334 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:27:27.334 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:27.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28702 150' command took 2 ms to send, 1374 ms to get response, and 1384 ms overall
17-03-18 05:27:27.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:27.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130582818801528. ------
17-03-18 05:27:27.334 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:27.344 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13699 mm
17-03-18 05:27:27.344 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:27.344 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:27:27.344 -07 000000461 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 05:27:27.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:27.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 05:27:27.554 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:27:27.554 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:27.554 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:27:27.554 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:27:27.554 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:27.554 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:27.554 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:27.554 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:27:27.564 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:27:27.564 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29926, sync = True, waitForSettling = False)
17-03-18 05:27:27.564 -07 000000569 INF: Z Motor: Moving to -0.136992 mm, started at -0.130583 mm, distance = -6.41 um
17-03-18 05:27:27.564 -07 000000569 INF: FPGA: Xmit ZDACW 29926\n [Z Motor]
17-03-18 05:27:27.574 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:27.574 -07 000000512 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:27:27.574 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:27:27.574 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 216 ms to get response, and 233 ms overall
17-03-18 05:27:27.574 -07 000000461 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:27.574 -07 000000461 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:27.574 -07 000000461 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:27:27.574 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:27.574 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 236 ms overall
17-03-18 05:27:27.574 -07 000000569 INF: FPGA: 'ZDACW 29926' command took 0 ms to send, 6 ms to get response, and 7 ms overall
17-03-18 05:27:27.584 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:27.584 -07 000000512 INF: FPGA: Recv ZDACR 29926
17-03-18 05:27:27.594 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:27.594 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:27:27.594 -07 000000569 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 05:27:27.794 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:27.794 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-18 05:27:27.954 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:27:27.954 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 379 ms overall
17-03-18 05:27:28.004 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:28.014 -07 000000512 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:27:28.014 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:27:28.014 -07 000000461 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:28.014 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:27:28.014 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.216 mm/sec
17-03-18 05:27:28.964 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:28.964 -07 000000512 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:27:28.974 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:28.974 -07 000000461 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:29.004 -07 000000461 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:29.004 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:29.004 -07 000000461 INF: Y Motor: Moved to 66.5381 after 1660 ms (table move)
17-03-18 05:27:29.004 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136992 mm (DAC = 29926)
17-03-18 05:27:29.004 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30613
17-03-18 05:27:29.014 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:27:29.014 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.014 -07 000000461 INF: FPGA: Recv ZSGSRD 30617
17-03-18 05:27:29.024 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:29.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30610
17-03-18 05:27:29.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.034 -07 000000461 INF: FPGA: Recv ZSGSRD 30618
17-03-18 05:27:29.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.044 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.044 -07 000000512 INF: FPGA: Recv ZSGSRD 30619
17-03-18 05:27:29.054 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.054 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.054 -07 000000618 INF: FPGA: Recv ZSGSRD 30610
17-03-18 05:27:29.064 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.064 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.064 -07 000000618 INF: FPGA: Recv ZSGSRD 30616
17-03-18 05:27:29.074 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.074 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.074 -07 000000461 INF: FPGA: Recv ZSGSRD 30619
17-03-18 05:27:29.084 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.084 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.084 -07 000000569 INF: FPGA: Recv ZSGSRD 30611
17-03-18 05:27:29.094 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.094 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:29.094 -07 000000461 INF: FPGA: Recv ZSGSRD 30608
17-03-18 05:27:29.104 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.104 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:29.104 -07 000000618 INF: FPGA: Recv ZPIEZORD 26417
17-03-18 05:27:29.114 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:29.114 -07 000000012 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.2 V.
17-03-18 05:27:29.114 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30614 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30614 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30608 (-136.2 uncal um), Max = 30619 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:29.114 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30614, posNoise = 5, negNoise = 6
17-03-18 05:27:29.114 -07 000000012 INF: Z Motor: After move to -0.136992, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:29.114 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-18 05:27:29.114 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:29.164 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1819 ms
17-03-18 05:27:29.164 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:29.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:29.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:29.164 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:29.164 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:29.164 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:29.164 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:29.174 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:29.174 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:29.174 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:29.174 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:29.184 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:27:29.184 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:27:29.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:29.224 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:29.524 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:29.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:29.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:29.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:27:29.564 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:29.564 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:29.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:27:29.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:27:29.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:29.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:29.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:27:29.664 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:29.664 -07 000000512 INF: Autofocus start
17-03-18 05:27:29.664 -07 000000512 INF: MeasureProfile start
17-03-18 05:27:29.664 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:29.674 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:29.674 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:29.674 -07 000000512 INF: MeasureProfile done
17-03-18 05:27:29.674 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:27:29.674 -07 000000512 INF: Autofocus finished
17-03-18 05:27:29.874 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:29.874 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:29.874 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.136994182519005. ----------
17-03-18 05:27:29.874 -07 000000610 INF: Cycle	137	Tile	9	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:29.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28421, sync = True, waitForSettling = True)
17-03-18 05:27:29.884 -07 000000610 INF: Z Motor: Moving to -0.130103 mm, started at -0.136994 mm, distance = 6.89 um
17-03-18 05:27:29.894 -07 000000610 INF: FPGA: Xmit ZDACW 28421\n [Z Motor]
17-03-18 05:27:29.894 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:27:29.904 -07 000000610 INF: FPGA: 'ZDACW 28421' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:27:29.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:29.914 -07 000000618 INF: FPGA: Recv ZDACR 28421
17-03-18 05:27:29.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:29.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:30.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.074 -07 000000618 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:27:30.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:30.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29539
17-03-18 05:27:30.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.094 -07 000000618 INF: FPGA: Recv ZSGSRD 29546
17-03-18 05:27:30.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29540
17-03-18 05:27:30.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.114 -07 000000569 INF: FPGA: Recv ZSGSRD 29534
17-03-18 05:27:30.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:27:30.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.134 -07 000000012 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:27:30.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.144 -07 000000461 INF: FPGA: Recv ZSGSRD 29538
17-03-18 05:27:30.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.154 -07 000000012 INF: FPGA: Recv ZSGSRD 29537
17-03-18 05:27:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:30.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29545
17-03-18 05:27:30.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:30.174 -07 000000012 INF: FPGA: Recv ZPIEZORD 25019
17-03-18 05:27:30.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:30.184 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.9 V.
17-03-18 05:27:30.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29540 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29534 (-129.3 uncal um), Max = 29546 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:30.184 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29540, posNoise = 6, negNoise = 6
17-03-18 05:27:30.184 -07 000000610 INF: Z Motor: After move to -0.130103, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:30.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 05:27:30.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:30.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:30.184 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:30.184 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:30.184 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:30.184 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:30.184 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:30.184 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:30.184 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:30.184 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:30.184 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:30.184 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:30.194 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:30.194 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:30.194 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:30.194 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:30.204 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 05:27:30.204 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:27:30.214 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 05:27:30.214 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 05:27:30.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28598 150\n [Camera]
17-03-18 05:27:30.244 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.012614,
17-03-18 05:27:30.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:27:30.854 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:30.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:30.854 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:30.854 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:30.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:27:30.854 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:30.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:30.854 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:30.854 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:30.854 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:27:31.044 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28598 823
17-03-18 05:27:31.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:31.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:27:31.244 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:27:31.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:31.244 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:27:31.244 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:27:31.244 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:31.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:31.244 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:27:31.244 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:31.254 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:27:31.404 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:31.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:31.404 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:31.524 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:31.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:31.534 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:31.534 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:31.534 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:27:31.534 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:31.534 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 593483960, 0x0, 418435064) start.
17-03-18 05:27:31.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:27:31.594 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:31.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28598 150' command took 2 ms to send, 1377 ms to get response, and 1383 ms overall
17-03-18 05:27:31.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:31.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130094578678754. ------
17-03-18 05:27:31.604 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:31.604 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13690 mm
17-03-18 05:27:31.604 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:31.604 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:27:31.604 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 05:27:31.614 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:31.934 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 593483960, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:27:31.934 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:27:31.934 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:31.934 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:27:31.934 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:27:31.934 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:31.934 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:31.934 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:31.934 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 05:27:31.944 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:27:31.964 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29905, sync = True, waitForSettling = False)
17-03-18 05:27:31.964 -07 000000569 INF: Z Motor: Moving to -0.136896 mm, started at -0.130095 mm, distance = -6.80 um
17-03-18 05:27:31.964 -07 000000569 INF: FPGA: Xmit ZDACW 29905\n [Z Motor]
17-03-18 05:27:31.964 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:31.964 -07 000000424 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:27:31.964 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:31.964 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:27:31.964 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 355 ms to get response, and 362 ms overall
17-03-18 05:27:31.964 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:31.964 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 345 ms to get response, and 359 ms overall
17-03-18 05:27:31.964 -07 000000461 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:31.964 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:31.964 -07 000000461 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:27:31.974 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:31.974 -07 000000569 INF: FPGA: 'ZDACW 29905' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:31.984 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:31.994 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:31.994 -07 000000424 INF: FPGA: Recv ZDACR 29905
17-03-18 05:27:32.004 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:27:32.004 -07 000000569 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:27:32.184 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:32.184 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 05:27:32.344 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:27:32.344 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 05:27:32.394 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:32.404 -07 000000618 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:27:32.404 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:27:32.404 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:32.404 -07 000000461 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:27:32.404 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.845 mm, average velocity = 2.217 mm/sec
17-03-18 05:27:33.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:33.354 -07 000000569 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:27:33.364 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:33.364 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:33.394 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:33.394 -07 000000461 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:33.394 -07 000000461 INF: Y Motor: Moved to 67.3711 after 1784 ms (table move)
17-03-18 05:27:33.394 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136896 mm (DAC = 29905)
17-03-18 05:27:33.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.394 -07 000000461 INF: FPGA: Recv ZSGSRD 30607
17-03-18 05:27:33.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:33.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.404 -07 000000618 INF: FPGA: Recv ZSGSRD 30605
17-03-18 05:27:33.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30600
17-03-18 05:27:33.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.424 -07 000000618 INF: FPGA: Recv ZSGSRD 30594
17-03-18 05:27:33.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30595
17-03-18 05:27:33.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.444 -07 000000618 INF: FPGA: Recv ZSGSRD 30597
17-03-18 05:27:33.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.454 -07 000000461 INF: FPGA: Recv ZSGSRD 30595
17-03-18 05:27:33.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.464 -07 000000461 INF: FPGA: Recv ZSGSRD 30601
17-03-18 05:27:33.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.474 -07 000000569 INF: FPGA: Recv ZSGSRD 30604
17-03-18 05:27:33.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:33.484 -07 000000424 INF: FPGA: Recv ZSGSRD 30604
17-03-18 05:27:33.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.494 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:33.494 -07 000000569 INF: FPGA: Recv ZPIEZORD 26434
17-03-18 05:27:33.504 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:33.504 -07 000000512 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 05:27:33.504 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30600 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30600 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30594 (-136.1 uncal um), Max = 30607 (-136.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:27:33.504 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30600, posNoise = 7, negNoise = 6
17-03-18 05:27:33.504 -07 000000512 INF: Z Motor: After move to -0.136896, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:33.504 -07 000000512 INF: Z Motor: Settle wait time = 1431 ms, measure time = 107 ms (allowed 150 ms), total time = 1538 ms
17-03-18 05:27:33.504 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:33.554 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1946 ms
17-03-18 05:27:33.554 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:33.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:33.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:33.554 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:33.554 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:33.554 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:33.554 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:33.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:33.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:33.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:33.564 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:33.574 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:33.574 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:27:33.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:33.614 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:33.914 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:33.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:33.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:33.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 05:27:33.954 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:33.954 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:33.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:27:34.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:27:34.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:34.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:34.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:27:34.054 -07 000000569 INF: Autofocus start
17-03-18 05:27:34.054 -07 000000569 INF: MeasureProfile start
17-03-18 05:27:34.054 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:34.054 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:34.064 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:34.064 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:34.064 -07 000000569 INF: MeasureProfile done
17-03-18 05:27:34.064 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:27:34.064 -07 000000569 INF: Autofocus finished
17-03-18 05:27:34.264 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:34.264 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:34.264 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13690424354902. ----------
17-03-18 05:27:34.264 -07 000000610 INF: Cycle	137	Tile	10	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:34.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28429, sync = True, waitForSettling = True)
17-03-18 05:27:34.274 -07 000000610 INF: Z Motor: Moving to -0.130140 mm, started at -0.136904 mm, distance = 6.76 um
17-03-18 05:27:34.274 -07 000000610 INF: FPGA: Xmit ZDACW 28429\n [Z Motor]
17-03-18 05:27:34.274 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:27:34.284 -07 000000610 INF: FPGA: 'ZDACW 28429' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:34.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:34.284 -07 000000569 INF: FPGA: Recv ZDACR 28429
17-03-18 05:27:34.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.444 -07 000000618 INF: FPGA: Recv ZSGSRD 29546
17-03-18 05:27:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.454 -07 000000569 INF: FPGA: Recv ZSGSRD 29550
17-03-18 05:27:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.464 -07 000000618 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:27:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.474 -07 000000569 INF: FPGA: Recv ZSGSRD 29545
17-03-18 05:27:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.484 -07 000000455 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:27:34.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.494 -07 000000569 INF: FPGA: Recv ZSGSRD 29549
17-03-18 05:27:34.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.504 -07 000000618 INF: FPGA: Recv ZSGSRD 29549
17-03-18 05:27:34.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.514 -07 000000512 INF: FPGA: Recv ZSGSRD 29541
17-03-18 05:27:34.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.524 -07 000000455 INF: FPGA: Recv ZSGSRD 29548
17-03-18 05:27:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:34.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:27:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:34.544 -07 000000424 INF: FPGA: Recv ZPIEZORD 25026
17-03-18 05:27:34.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:34.554 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.9 V.
17-03-18 05:27:34.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29546 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29547 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29541 (-129.3 uncal um), Max = 29550 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:34.554 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29546, posNoise = 4, negNoise = 5
17-03-18 05:27:34.554 -07 000000610 INF: Z Motor: After move to -0.130140, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:34.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:27:34.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:34.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:34.554 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:34.554 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:34.554 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:34.554 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:34.554 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:34.554 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:34.554 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:34.554 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:34.554 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:34.554 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:34.564 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:34.564 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:34.564 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:34.564 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:34.574 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:27:34.574 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:27:34.574 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:27:34.574 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:34.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28606 150\n [Camera]
17-03-18 05:27:34.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:35.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:35.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:35.214 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:35.214 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:35.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:27:35.214 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:35.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:35.214 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:35.214 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:35.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:27:35.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28606 823
17-03-18 05:27:35.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:35.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:27:35.594 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:27:35.594 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:35.594 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:27:35.604 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.011254,
17-03-18 05:27:35.604 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:27:35.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:27:35.604 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:27:35.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:35.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:35.614 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:27:35.764 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:35.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:35.764 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:35.874 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:35.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:35.874 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:35.874 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:35.874 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:27:35.884 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:35.884 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 593483960, 0x0, 418435064) start.
17-03-18 05:27:35.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:35.954 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:35.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28606 150' command took 2 ms to send, 1376 ms to get response, and 1384 ms overall
17-03-18 05:27:35.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:35.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130133123951604. ------
17-03-18 05:27:35.964 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:35.964 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13658 mm
17-03-18 05:27:35.964 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:35.964 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:27:35.964 -07 000000579 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:27:35.974 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:36.274 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 593483960, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:27:36.274 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:27:36.274 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:36.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:27:36.274 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:27:36.274 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:36.284 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:36.284 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:36.284 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 05:27:36.284 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:27:36.294 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29836, sync = True, waitForSettling = False)
17-03-18 05:27:36.294 -07 000000461 INF: Z Motor: Moving to -0.136580 mm, started at -0.130133 mm, distance = -6.45 um
17-03-18 05:27:36.294 -07 000000461 INF: FPGA: Xmit ZDACW 29836\n [Z Motor]
17-03-18 05:27:36.294 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:36.294 -07 000000474 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:27:36.294 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 327 ms to get response, and 335 ms overall
17-03-18 05:27:36.294 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 317 ms to get response, and 332 ms overall
17-03-18 05:27:36.294 -07 000000579 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:36.294 -07 000000579 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:36.294 -07 000000579 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:27:36.294 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:27:36.304 -07 000000461 INF: FPGA: 'ZDACW 29836' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:27:36.304 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:36.314 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:36.324 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:36.324 -07 000000474 INF: FPGA: Recv ZDACR 29836
17-03-18 05:27:36.334 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:27:36.334 -07 000000461 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:27:36.504 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:36.504 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 05:27:36.684 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:27:36.684 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 390 ms overall
17-03-18 05:27:36.734 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:36.744 -07 000000461 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:27:36.744 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:27:36.744 -07 000000579 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:36.744 -07 000000579 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:27:36.744 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.842 mm, average velocity = 2.152 mm/sec
17-03-18 05:27:36.764 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:36.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:37.694 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:37.694 -07 000000461 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:27:37.704 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:37.704 -07 000000579 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:37.744 -07 000000579 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:37.744 -07 000000579 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:37.744 -07 000000579 INF: Y Motor: Moved to 68.2036 after 1775 ms (table move)
17-03-18 05:27:37.744 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136580 mm (DAC = 29836)
17-03-18 05:27:37.744 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.744 -07 000000461 INF: FPGA: Recv ZSGSRD 30549
17-03-18 05:27:37.754 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:27:37.754 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.754 -07 000000625 INF: FPGA: Recv ZSGSRD 30550
17-03-18 05:27:37.764 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.764 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.764 -07 000000579 INF: FPGA: Recv ZSGSRD 30547
17-03-18 05:27:37.774 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.774 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.774 -07 000000579 INF: FPGA: Recv ZSGSRD 30548
17-03-18 05:27:37.784 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.784 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.784 -07 000000474 INF: FPGA: Recv ZSGSRD 30546
17-03-18 05:27:37.794 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.794 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.794 -07 000000474 INF: FPGA: Recv ZSGSRD 30551
17-03-18 05:27:37.804 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.804 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.804 -07 000000579 INF: FPGA: Recv ZSGSRD 30549
17-03-18 05:27:37.814 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.814 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.814 -07 000000461 INF: FPGA: Recv ZSGSRD 30554
17-03-18 05:27:37.824 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.824 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.824 -07 000000461 INF: FPGA: Recv ZSGSRD 30543
17-03-18 05:27:37.834 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.834 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:37.834 -07 000000625 INF: FPGA: Recv ZSGSRD 30547
17-03-18 05:27:37.844 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.844 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:37.844 -07 000000461 INF: FPGA: Recv ZPIEZORD 26358
17-03-18 05:27:37.854 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:37.854 -07 000000618 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -9.2 V.
17-03-18 05:27:37.854 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30548 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30548 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30543 (-135.7 uncal um), Max = 30554 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:37.854 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30548, posNoise = 6, negNoise = 5
17-03-18 05:27:37.854 -07 000000618 INF: Z Motor: After move to -0.136580, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:37.854 -07 000000618 INF: Z Motor: Settle wait time = 1449 ms, measure time = 104 ms (allowed 150 ms), total time = 1553 ms
17-03-18 05:27:37.854 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:37.904 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1937 ms
17-03-18 05:27:37.904 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:37.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:37.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:37.904 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:37.904 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:37.904 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:37.904 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:37.904 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:37.904 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:37.914 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:37.914 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:37.914 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:37.914 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:27:37.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:37.964 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:38.264 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:38.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:38.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:38.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 05:27:38.304 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:38.304 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:38.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:27:38.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:27:38.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:38.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:38.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:27:38.404 -07 000000467 INF: Autofocus start
17-03-18 05:27:38.404 -07 000000467 INF: MeasureProfile start
17-03-18 05:27:38.404 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:38.404 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:38.414 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:38.414 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:38.414 -07 000000467 INF: MeasureProfile done
17-03-18 05:27:38.414 -07 000000467 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:27:38.414 -07 000000467 INF: Autofocus finished
17-03-18 05:27:38.614 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:38.614 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:27:38.614 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.136570184517649. ----------
17-03-18 05:27:38.624 -07 000000610 INF: Cycle	137	Tile	11	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:38.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28331, sync = True, waitForSettling = True)
17-03-18 05:27:38.624 -07 000000610 INF: Z Motor: Moving to -0.129691 mm, started at -0.136570 mm, distance = 6.88 um
17-03-18 05:27:38.624 -07 000000610 INF: FPGA: Xmit ZDACW 28331\n [Z Motor]
17-03-18 05:27:38.624 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:27:38.634 -07 000000610 INF: FPGA: 'ZDACW 28331' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:38.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:38.634 -07 000000606 INF: FPGA: Recv ZDACR 28331
17-03-18 05:27:38.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:38.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.794 -07 000000579 INF: FPGA: Recv ZSGSRD 29476
17-03-18 05:27:38.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:38.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.804 -07 000000467 INF: FPGA: Recv ZSGSRD 29476
17-03-18 05:27:38.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.814 -07 000000618 INF: FPGA: Recv ZSGSRD 29473
17-03-18 05:27:38.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.824 -07 000000424 INF: FPGA: Recv ZSGSRD 29474
17-03-18 05:27:38.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.834 -07 000000618 INF: FPGA: Recv ZSGSRD 29478
17-03-18 05:27:38.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.844 -07 000000474 INF: FPGA: Recv ZSGSRD 29473
17-03-18 05:27:38.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.854 -07 000000424 INF: FPGA: Recv ZSGSRD 29482
17-03-18 05:27:38.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29481
17-03-18 05:27:38.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.874 -07 000000461 INF: FPGA: Recv ZSGSRD 29478
17-03-18 05:27:38.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:38.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29473
17-03-18 05:27:38.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:38.894 -07 000000461 INF: FPGA: Recv ZPIEZORD 24961
17-03-18 05:27:38.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:38.904 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.9 V.
17-03-18 05:27:38.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29476 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29473 (-128.9 uncal um), Max = 29482 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:27:38.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29476, posNoise = 6, negNoise = 3
17-03-18 05:27:38.904 -07 000000610 INF: Z Motor: After move to -0.129691, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:38.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:27:38.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:38.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:38.904 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:38.904 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:38.904 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:38.904 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:38.904 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:38.904 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:38.904 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:38.904 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:38.904 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:38.904 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:38.914 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:38.914 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:38.914 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:27:38.914 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:38.924 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:27:38.924 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:27:38.924 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:27:38.924 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:27:38.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28508 150\n [Camera]
17-03-18 05:27:39.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:39.564 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:39.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:39.564 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:39.564 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:39.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:39.564 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:39.574 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:39.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:27:39.574 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:39.574 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:27:39.754 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28508 823
17-03-18 05:27:39.904 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:39.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:27:39.964 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:27:39.964 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:39.974 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:39.974 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:27:39.974 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:27:39.974 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:27:39.974 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:39.974 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:39.984 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:27:40.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:40.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:40.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:40.124 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:40.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:40.124 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:40.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:27:40.124 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:40.124 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:40.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:27:40.314 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:40.314 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:40.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28508 150' command took 2 ms to send, 1381 ms to get response, and 1384 ms overall
17-03-18 05:27:40.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:40.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.129683429101681. ------
17-03-18 05:27:40.314 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13628 mm
17-03-18 05:27:40.314 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:40.314 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:40.314 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:27:40.314 -07 000000606 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 05:27:40.324 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:40.324 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:40.324 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:27:40.444 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29770, sync = True, waitForSettling = False)
17-03-18 05:27:40.444 -07 000000461 INF: Z Motor: Moving to -0.136278 mm, started at -0.129683 mm, distance = -6.59 um
17-03-18 05:27:40.444 -07 000000474 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:27:40.444 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 121 ms overall
17-03-18 05:27:40.444 -07 000000606 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:40.444 -07 000000606 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:40.444 -07 000000606 INF: Y Motor: Moving 1342 steps-18
17-03-18 05:27:40.454 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:40.464 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:40.474 -07 000000461 INF: FPGA: Xmit ZDACW 29770\n [Z Motor]
17-03-18 05:27:40.474 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:27:40.484 -07 000000461 INF: FPGA: 'ZDACW 29770' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:27:40.484 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:40.484 -07 000000012 INF: FPGA: Recv ZDACR 29770
17-03-18 05:27:40.494 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:40.494 -07 000000461 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:27:40.524 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:27:40.524 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:27:40.524 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:40.524 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:27:40.524 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:27:40.524 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:40.534 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:40.534 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:27:40.534 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:40.534 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:27:40.664 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:40.664 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:27:40.824 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:27:40.824 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 05:27:40.874 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:40.874 -07 000000512 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:27:40.884 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:27:40.884 -07 000000606 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:40.884 -07 000000606 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 05:27:40.884 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.202 mm/sec
17-03-18 05:27:41.074 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.004458,
17-03-18 05:27:41.764 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:41.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:41.834 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:41.834 -07 000000424 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:27:41.844 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.844 -07 000000606 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:41.874 -07 000000606 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:41.874 -07 000000606 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:41.874 -07 000000606 INF: Y Motor: Moved to 69.0259 after 1552 ms (table move)
17-03-18 05:27:41.874 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136278 mm (DAC = 29770)
17-03-18 05:27:41.874 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.874 -07 000000424 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:27:41.884 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:41.884 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.884 -07 000000512 INF: FPGA: Recv ZSGSRD 30498
17-03-18 05:27:41.894 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.894 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.894 -07 000000424 INF: FPGA: Recv ZSGSRD 30495
17-03-18 05:27:41.904 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.904 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.904 -07 000000606 INF: FPGA: Recv ZSGSRD 30497
17-03-18 05:27:41.914 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.914 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.914 -07 000000424 INF: FPGA: Recv ZSGSRD 30509
17-03-18 05:27:41.924 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.924 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.924 -07 000000424 INF: FPGA: Recv ZSGSRD 30508
17-03-18 05:27:41.934 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.934 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.934 -07 000000424 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:27:41.944 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.944 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.944 -07 000000512 INF: FPGA: Recv ZSGSRD 30507
17-03-18 05:27:41.954 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.954 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.954 -07 000000512 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:27:41.964 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.964 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:41.964 -07 000000501 INF: FPGA: Recv ZSGSRD 30500
17-03-18 05:27:41.974 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.974 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:41.974 -07 000000424 INF: FPGA: Recv ZPIEZORD 26327
17-03-18 05:27:41.984 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:41.984 -07 000000625 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.2 V.
17-03-18 05:27:41.984 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30504 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30505 (-135.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30495 (-135.4 uncal um), Max = 30512 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:27:41.984 -07 000000625 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30504, posNoise = 8, negNoise = 9
17-03-18 05:27:41.984 -07 000000625 INF: Z Motor: After move to -0.136278, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:41.984 -07 000000625 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-18 05:27:41.984 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:42.034 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-18 05:27:42.034 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:42.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:42.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:42.034 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:42.034 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:42.034 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:42.044 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:42.044 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:27:42.044 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:42.044 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:42.044 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:42.054 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:42.054 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:27:42.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:42.094 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:42.394 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:42.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:42.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:42.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:27:42.434 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:42.434 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:42.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:27:42.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 05:27:42.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:42.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:42.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 05:27:42.634 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:42.634 -07 000000501 INF: Autofocus start
17-03-18 05:27:42.634 -07 000000501 INF: MeasureProfile start
17-03-18 05:27:42.634 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:42.644 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:42.644 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:42.644 -07 000000501 INF: MeasureProfile done
17-03-18 05:27:42.644 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:27:42.644 -07 000000501 INF: Autofocus finished
17-03-18 05:27:42.844 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:42.844 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:42.844 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136287519183411. ----------
17-03-18 05:27:42.844 -07 000000610 INF: Cycle	137	Tile	12	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:42.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28311, sync = True, waitForSettling = True)
17-03-18 05:27:42.854 -07 000000610 INF: Z Motor: Moving to -0.129599 mm, started at -0.136288 mm, distance = 6.69 um
17-03-18 05:27:42.854 -07 000000610 INF: FPGA: Xmit ZDACW 28311\n [Z Motor]
17-03-18 05:27:42.854 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:27:42.864 -07 000000610 INF: FPGA: 'ZDACW 28311' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:42.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:42.864 -07 000000501 INF: FPGA: Recv ZDACR 28311
17-03-18 05:27:42.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:42.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.024 -07 000000569 INF: FPGA: Recv ZSGSRD 29460
17-03-18 05:27:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.034 -07 000000501 INF: FPGA: Recv ZSGSRD 29462
17-03-18 05:27:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.044 -07 000000606 INF: FPGA: Recv ZSGSRD 29462
17-03-18 05:27:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.054 -07 000000618 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:27:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.064 -07 000000569 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:27:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29466
17-03-18 05:27:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29467
17-03-18 05:27:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.094 -07 000000606 INF: FPGA: Recv ZSGSRD 29466
17-03-18 05:27:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.104 -07 000000625 INF: FPGA: Recv ZSGSRD 29462
17-03-18 05:27:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:43.114 -07 000000512 INF: FPGA: Recv ZSGSRD 29467
17-03-18 05:27:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:43.124 -07 000000618 INF: FPGA: Recv ZPIEZORD 24991
17-03-18 05:27:43.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:43.134 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.8 V.
17-03-18 05:27:43.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29464 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29465 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29460 (-128.8 uncal um), Max = 29467 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:27:43.134 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29464, posNoise = 3, negNoise = 4
17-03-18 05:27:43.134 -07 000000610 INF: Z Motor: After move to -0.129599, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:43.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:27:43.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:43.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:43.134 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:43.134 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:43.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:43.134 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:43.134 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:43.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:43.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:43.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:43.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:43.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:43.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:43.144 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:43.144 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:27:43.144 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:43.154 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:27:43.154 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:27:43.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:27:43.154 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:27:43.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28487 150\n [Camera]
17-03-18 05:27:43.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:43.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:43.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:43.794 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:43.794 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:43.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:43.794 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:43.794 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:43.794 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:27:43.794 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:43.794 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:27:43.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28487 826
17-03-18 05:27:44.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:44.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:27:44.194 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:27:44.194 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:44.194 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:27:44.194 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:27:44.194 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:44.204 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:44.204 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:27:44.204 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:44.204 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:27:44.344 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:44.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:44.344 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:44.344 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:44.344 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:27:44.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:44.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:44.344 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:44.354 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:44.354 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:27:44.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:44.534 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:44.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28487 150' command took 2 ms to send, 1377 ms to get response, and 1384 ms overall
17-03-18 05:27:44.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:44.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.12960633855598. ------
17-03-18 05:27:44.544 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:44.544 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13607 mm
17-03-18 05:27:44.544 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:44.544 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:44.544 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:27:44.544 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:27:44.544 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29725, sync = True, waitForSettling = False)
17-03-18 05:27:44.544 -07 000000424 INF: Z Motor: Moving to -0.136072 mm, started at -0.129606 mm, distance = -6.47 um
17-03-18 05:27:44.554 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:44.554 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:44.554 -07 000000606 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:27:44.564 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:44.564 -07 000000455 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:44.564 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:44.564 -07 000000455 INF: Y Motor: Moving 1355 steps-34
17-03-18 05:27:44.564 -07 000000424 INF: FPGA: Xmit ZDACW 29725\n [Z Motor]
17-03-18 05:27:44.564 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:27:44.574 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:44.574 -07 000000424 INF: FPGA: 'ZDACW 29725' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:27:44.584 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:44.594 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:44.594 -07 000000606 INF: FPGA: Recv ZDACR 29725
17-03-18 05:27:44.604 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:27:44.604 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:27:44.754 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:27:44.754 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:27:44.754 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:44.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 05:27:44.754 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:27:44.754 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:44.764 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:44.764 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:44.764 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 05:27:44.764 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:27:44.774 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:44.774 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:27:44.964 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:27:44.964 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 05:27:45.014 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:45.014 -07 000000606 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:27:45.024 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:45.024 -07 000000455 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:45.024 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:27:45.024 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.847 mm, average velocity = 2.117 mm/sec
17-03-18 05:27:45.974 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:45.974 -07 000000467 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:27:45.984 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:45.984 -07 000000455 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:46.014 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:46.014 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:46.014 -07 000000455 INF: Y Motor: Moved to 69.8623 after 1462 ms (table move)
17-03-18 05:27:46.014 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136072 mm (DAC = 29725)
17-03-18 05:27:46.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.014 -07 000000606 INF: FPGA: Recv ZSGSRD 30470
17-03-18 05:27:46.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:46.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.024 -07 000000467 INF: FPGA: Recv ZSGSRD 30468
17-03-18 05:27:46.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30470
17-03-18 05:27:46.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.044 -07 000000606 INF: FPGA: Recv ZSGSRD 30476
17-03-18 05:27:46.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.054 -07 000000467 INF: FPGA: Recv ZSGSRD 30471
17-03-18 05:27:46.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.064 -07 000000467 INF: FPGA: Recv ZSGSRD 30470
17-03-18 05:27:46.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.074 -07 000000467 INF: FPGA: Recv ZSGSRD 30470
17-03-18 05:27:46.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.084 -07 000000606 INF: FPGA: Recv ZSGSRD 30471
17-03-18 05:27:46.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:46.094 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.094 -07 000000467 INF: FPGA: Recv ZSGSRD 30469
17-03-18 05:27:46.104 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.104 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:46.104 -07 000000606 INF: FPGA: Recv ZSGSRD 30469
17-03-18 05:27:46.114 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.124 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:46.124 -07 000000606 INF: FPGA: Recv ZPIEZORD 26309
17-03-18 05:27:46.134 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:46.134 -07 000000501 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -9.2 V.
17-03-18 05:27:46.134 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30470 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30470 (-135.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30468 (-135.3 uncal um), Max = 30476 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:27:46.134 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30470, posNoise = 6, negNoise = 2
17-03-18 05:27:46.134 -07 000000501 INF: Z Motor: After move to -0.136072, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:46.134 -07 000000501 INF: Z Motor: Settle wait time = 1465 ms, measure time = 116 ms (allowed 150 ms), total time = 1581 ms
17-03-18 05:27:46.134 -07 000000501 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:46.174 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:27:46.174 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:46.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:46.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:46.174 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:46.174 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:46.174 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:46.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:46.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:46.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:46.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:27:46.184 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:46.194 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:27:46.194 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:27:46.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:46.244 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:46.454 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.994908,
17-03-18 05:27:46.544 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:46.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:46.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:46.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-18 05:27:46.584 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:46.584 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:46.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:27:46.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:27:46.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:46.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:46.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:27:46.684 -07 000000455 INF: Autofocus start
17-03-18 05:27:46.684 -07 000000455 INF: MeasureProfile start
17-03-18 05:27:46.684 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:46.684 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:46.694 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:46.694 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:46.694 -07 000000455 INF: MeasureProfile done
17-03-18 05:27:46.694 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:27:46.694 -07 000000455 INF: Autofocus finished
17-03-18 05:27:46.764 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:46.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:46.894 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:46.894 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:46.894 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.136069095970591. ----------
17-03-18 05:27:46.894 -07 000000610 INF: Cycle	137	Tile	13	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:46.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28249, sync = True, waitForSettling = True)
17-03-18 05:27:46.904 -07 000000610 INF: Z Motor: Moving to -0.129316 mm, started at -0.136069 mm, distance = 6.75 um
17-03-18 05:27:46.904 -07 000000610 INF: FPGA: Xmit ZDACW 28249\n [Z Motor]
17-03-18 05:27:46.904 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:27:46.914 -07 000000610 INF: FPGA: 'ZDACW 28249' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:46.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:46.914 -07 000000606 INF: FPGA: Recv ZDACR 28249
17-03-18 05:27:46.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:46.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29419
17-03-18 05:27:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.084 -07 000000606 INF: FPGA: Recv ZSGSRD 29422
17-03-18 05:27:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.094 -07 000000501 INF: FPGA: Recv ZSGSRD 29419
17-03-18 05:27:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.104 -07 000000606 INF: FPGA: Recv ZSGSRD 29415
17-03-18 05:27:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.114 -07 000000467 INF: FPGA: Recv ZSGSRD 29417
17-03-18 05:27:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.124 -07 000000501 INF: FPGA: Recv ZSGSRD 29419
17-03-18 05:27:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.134 -07 000000479 INF: FPGA: Recv ZSGSRD 29420
17-03-18 05:27:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29419
17-03-18 05:27:47.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.154 -07 000000455 INF: FPGA: Recv ZSGSRD 29421
17-03-18 05:27:47.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:47.164 -07 000000608 INF: FPGA: Recv ZSGSRD 29416
17-03-18 05:27:47.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:47.174 -07 000000479 INF: FPGA: Recv ZPIEZORD 24884
17-03-18 05:27:47.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:47.184 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.9 V.
17-03-18 05:27:47.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29419 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29419 (-128.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29415 (-128.5 uncal um), Max = 29422 (-128.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:27:47.184 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29419, posNoise = 3, negNoise = 4
17-03-18 05:27:47.184 -07 000000610 INF: Z Motor: After move to -0.129316, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:47.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:27:47.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:47.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:47.184 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:47.184 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:47.184 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:47.184 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:47.184 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:47.184 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:47.184 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:47.184 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:47.184 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:27:47.184 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:47.194 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:47.194 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:47.194 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:47.194 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:47.194 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:27:47.194 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:47.194 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:27:47.194 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:27:47.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28425 150\n [Camera]
17-03-18 05:27:47.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:47.834 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:47.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:47.844 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:47.844 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:47.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:27:47.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:47.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:47.844 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:47.844 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:47.844 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:27:48.034 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28425 823
17-03-18 05:27:48.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:48.214 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:27:48.214 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:27:48.214 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:48.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:27:48.214 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:27:48.214 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:48.214 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:48.224 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:48.224 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:27:48.224 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:27:48.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:48.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:48.394 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:48.394 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:48.394 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:48.394 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:27:48.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:48.394 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:48.394 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:48.394 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:27:48.584 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:27:48.584 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:48.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28425 150' command took 2 ms to send, 1378 ms to get response, and 1387 ms overall
17-03-18 05:27:48.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:48.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.129317249009601. ------
17-03-18 05:27:48.594 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:48.594 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13569 mm
17-03-18 05:27:48.594 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:48.594 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:27:48.594 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:27:48.594 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29642, sync = True, waitForSettling = False)
17-03-18 05:27:48.594 -07 000000012 INF: Z Motor: Moving to -0.135692 mm, started at -0.129317 mm, distance = -6.38 um
17-03-18 05:27:48.594 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:48.604 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:48.604 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:48.604 -07 000000579 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:27:48.614 -07 000000012 INF: FPGA: Xmit ZDACW 29642\n [Z Motor]
17-03-18 05:27:48.614 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:27:48.744 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:48.744 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:27:48.744 -07 000000012 INF: FPGA: 'ZDACW 29642' command took 0 ms to send, 1 ms to get response, and 144 ms overall
17-03-18 05:27:48.744 -07 000000501 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:48.744 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:48.744 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:27:48.754 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:48.764 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:48.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:27:48.784 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:27:48.784 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:48.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:27:48.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:27:48.794 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:48.794 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:48.794 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:27:48.794 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:27:48.794 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:27:49.314 -07 000000579 INF: FPGA: Recv ZDACR 29642
17-03-18 05:27:49.314 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:49.314 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:27:49.314 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 560 ms to get response, and 710 ms overall
17-03-18 05:27:49.314 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 551 ms to get response, and 568 ms overall
17-03-18 05:27:49.314 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 540 ms to get response, and 568 ms overall
17-03-18 05:27:49.314 -07 000000012 INF: Z Motor: MoveAbsStepped took 714 ms (did NOT wait for settling yet))
17-03-18 05:27:49.364 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:49.364 -07 000000608 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:27:49.374 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:49.374 -07 000000501 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:49.374 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:27:49.374 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 569 ms, distance = 0.840 mm, average velocity = 1.477 mm/sec
17-03-18 05:27:50.324 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:50.324 -07 000000479 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:27:50.334 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:50.334 -07 000000501 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:50.364 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:50.364 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:50.364 -07 000000501 INF: Y Motor: Moved to 70.6875 after 1764 ms (table move)
17-03-18 05:27:50.364 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135692 mm (DAC = 29642)
17-03-18 05:27:50.364 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.364 -07 000000479 INF: FPGA: Recv ZSGSRD 30415
17-03-18 05:27:50.374 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:27:50.374 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.374 -07 000000474 INF: FPGA: Recv ZSGSRD 30420
17-03-18 05:27:50.384 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.384 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.384 -07 000000579 INF: FPGA: Recv ZSGSRD 30411
17-03-18 05:27:50.394 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.394 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.394 -07 000000618 INF: FPGA: Recv ZSGSRD 30408
17-03-18 05:27:50.404 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.404 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.404 -07 000000579 INF: FPGA: Recv ZSGSRD 30412
17-03-18 05:27:50.414 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.414 -07 000000479 INF: FPGA: Recv ZSGSRD 30414
17-03-18 05:27:50.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.424 -07 000000608 INF: FPGA: Recv ZSGSRD 30416
17-03-18 05:27:50.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.434 -07 000000618 INF: FPGA: Recv ZSGSRD 30409
17-03-18 05:27:50.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.444 -07 000000579 INF: FPGA: Recv ZSGSRD 30409
17-03-18 05:27:50.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:50.454 -07 000000618 INF: FPGA: Recv ZSGSRD 30412
17-03-18 05:27:50.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.464 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:50.464 -07 000000474 INF: FPGA: Recv ZPIEZORD 26255
17-03-18 05:27:50.474 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:50.474 -07 000000606 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -9.1 V.
17-03-18 05:27:50.474 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30413 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30412 (-134.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30408 (-134.9 uncal um), Max = 30420 (-135.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:50.474 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30413, posNoise = 7, negNoise = 5
17-03-18 05:27:50.474 -07 000000606 INF: Z Motor: After move to -0.135692, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:50.474 -07 000000606 INF: Z Motor: Settle wait time = 1767 ms, measure time = 106 ms (allowed 150 ms), total time = 1873 ms
17-03-18 05:27:50.474 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:50.524 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1925 ms
17-03-18 05:27:50.524 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:50.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:50.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:50.524 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:50.524 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:50.524 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:50.524 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:50.524 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:27:50.524 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:50.534 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:50.534 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:50.534 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:50.534 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:27:50.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:50.584 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 05:27:50.884 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:27:50.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:27:50.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:50.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:27:50.924 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:50.924 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:50.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:27:51.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:27:51.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:51.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:51.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:27:51.024 -07 000000455 INF: Autofocus start
17-03-18 05:27:51.024 -07 000000455 INF: MeasureProfile start
17-03-18 05:27:51.024 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:51.024 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:51.034 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:27:51.034 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:51.044 -07 000000455 INF: MeasureProfile done
17-03-18 05:27:51.044 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:27:51.044 -07 000000455 INF: Autofocus finished
17-03-18 05:27:51.234 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:51.234 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:27:51.234 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135702915878511. ----------
17-03-18 05:27:51.234 -07 000000610 INF: Cycle	137	Tile	14	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:51.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28150, sync = True, waitForSettling = True)
17-03-18 05:27:51.244 -07 000000610 INF: Z Motor: Moving to -0.128862 mm, started at -0.135703 mm, distance = 6.84 um
17-03-18 05:27:51.244 -07 000000610 INF: FPGA: Xmit ZDACW 28150\n [Z Motor]
17-03-18 05:27:51.244 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:27:51.254 -07 000000610 INF: FPGA: 'ZDACW 28150' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:51.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:51.254 -07 000000455 INF: FPGA: Recv ZDACR 28150
17-03-18 05:27:51.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:51.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.414 -07 000000579 INF: FPGA: Recv ZSGSRD 29351
17-03-18 05:27:51.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:51.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.424 -07 000000479 INF: FPGA: Recv ZSGSRD 29349
17-03-18 05:27:51.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.434 -07 000000474 INF: FPGA: Recv ZSGSRD 29347
17-03-18 05:27:51.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.444 -07 000000455 INF: FPGA: Recv ZSGSRD 29344
17-03-18 05:27:51.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.454 -07 000000606 INF: FPGA: Recv ZSGSRD 29350
17-03-18 05:27:51.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.464 -07 000000479 INF: FPGA: Recv ZSGSRD 29354
17-03-18 05:27:51.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.474 -07 000000606 INF: FPGA: Recv ZSGSRD 29345
17-03-18 05:27:51.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.484 -07 000000479 INF: FPGA: Recv ZSGSRD 29348
17-03-18 05:27:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:51.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.504 -07 000000012 INF: FPGA: Recv ZSGSRD 29348
17-03-18 05:27:51.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:51.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29347
17-03-18 05:27:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:27:51.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:51.554 -07 000000455 INF: FPGA: Recv ZPIEZORD 24864
17-03-18 05:27:51.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:51.564 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.295 V. Piezo Error = -9.8 V.
17-03-18 05:27:51.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29348 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29348 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29344 (-128.1 uncal um), Max = 29354 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:27:51.564 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29348, posNoise = 6, negNoise = 4
17-03-18 05:27:51.564 -07 000000610 INF: Z Motor: After move to -0.128862, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:51.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-18 05:27:51.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:51.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:51.564 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:51.564 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:51.564 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:51.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:51.564 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:51.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:51.564 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:51.564 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:51.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:51.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:51.574 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:51.574 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:51.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:51.574 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:51.584 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:27:51.584 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:27:51.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:27:51.584 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:27:51.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28326 150\n [Camera]
17-03-18 05:27:51.764 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:51.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:51.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:51.834 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 3.993549,
17-03-18 05:27:52.224 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:52.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:52.224 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:52.224 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:52.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:52.234 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:52.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:27:52.234 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:52.234 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:52.234 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:27:52.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28326 823
17-03-18 05:27:52.564 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:27:52.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:27:52.624 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:27:52.624 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:52.624 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:27:52.624 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:27:52.624 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:52.624 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:52.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:27:52.624 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:27:52.634 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:27:52.774 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:52.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:52.774 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:52.784 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:52.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:52.784 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:52.784 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:52.784 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:27:52.784 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:52.784 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:27:52.964 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-18 05:27:52.964 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:52.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28326 150' command took 2 ms to send, 1379 ms to get response, and 1383 ms overall
17-03-18 05:27:52.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:52.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128861129947536. ------
17-03-18 05:27:52.974 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:52.974 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13563 mm
17-03-18 05:27:52.974 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:53.084 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:53.084 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-18 05:27:53.084 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:53.094 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29628, sync = True, waitForSettling = False)
17-03-18 05:27:53.094 -07 000000579 INF: Z Motor: Moving to -0.135628 mm, started at -0.128861 mm, distance = -6.77 um
17-03-18 05:27:53.094 -07 000000579 INF: FPGA: Xmit ZDACW 29628\n [Z Motor]
17-03-18 05:27:53.094 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:27:53.094 -07 000000461 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:27:53.094 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:27:53.104 -07 000000579 INF: FPGA: 'ZDACW 29628' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:53.104 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:53.104 -07 000000606 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:27:53.114 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:27:53.114 -07 000000461 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:53.114 -07 000000461 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:53.114 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:27:53.114 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:53.114 -07 000000382 INF: FPGA: Recv ZDACR 29628
17-03-18 05:27:53.124 -07 000000579 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:27:53.124 -07 000000579 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 05:27:53.124 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:53.164 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:27:53.164 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 05:27:53.164 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:53.164 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:53.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:27:53.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:27:53.174 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:53.174 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:27:53.174 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:53.174 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:27:53.294 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:53.294 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-18 05:27:53.494 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 05:27:53.494 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:27:53.544 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:53.554 -07 000000501 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:27:53.554 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:27:53.554 -07 000000461 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:53.554 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:27:53.554 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec
17-03-18 05:27:54.504 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:54.504 -07 000000424 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:27:54.514 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.514 -07 000000461 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:54.554 -07 000000461 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:54.554 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:54.554 -07 000000461 INF: Y Motor: Moved to 71.5176 after 1463 ms (table move)
17-03-18 05:27:54.554 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135628 mm (DAC = 29628)
17-03-18 05:27:54.554 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.564 -07 000000501 INF: FPGA: Recv ZSGSRD 30402
17-03-18 05:27:54.564 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:27:54.564 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.564 -07 000000625 INF: FPGA: Recv ZSGSRD 30402
17-03-18 05:27:54.574 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:54.574 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.574 -07 000000012 INF: FPGA: Recv ZSGSRD 30404
17-03-18 05:27:54.584 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.584 -07 000000382 INF: FPGA: Recv ZSGSRD 30399
17-03-18 05:27:54.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.594 -07 000000579 INF: FPGA: Recv ZSGSRD 30395
17-03-18 05:27:54.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.604 -07 000000479 INF: FPGA: Recv ZSGSRD 30404
17-03-18 05:27:54.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.614 -07 000000012 INF: FPGA: Recv ZSGSRD 30404
17-03-18 05:27:54.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.624 -07 000000467 INF: FPGA: Recv ZSGSRD 30395
17-03-18 05:27:54.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.634 -07 000000618 INF: FPGA: Recv ZSGSRD 30404
17-03-18 05:27:54.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:54.644 -07 000000461 INF: FPGA: Recv ZSGSRD 30408
17-03-18 05:27:54.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.654 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:54.654 -07 000000608 INF: FPGA: Recv ZPIEZORD 26254
17-03-18 05:27:54.664 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:54.664 -07 000000569 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.521 V. Piezo Error = -9.1 V.
17-03-18 05:27:54.664 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30402 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30403 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30395 (-134.8 uncal um), Max = 30408 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:27:54.664 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30402, posNoise = 6, negNoise = 7
17-03-18 05:27:54.664 -07 000000569 INF: Z Motor: After move to -0.135628, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:54.664 -07 000000569 INF: Z Motor: Settle wait time = 1466 ms, measure time = 102 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:27:54.664 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:54.714 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 05:27:54.714 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:54.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:54.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:54.714 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:54.714 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:54.714 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:54.714 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:54.714 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:27:54.714 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:54.724 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:27:54.724 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:54.724 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:54.724 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:27:54.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:54.774 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:55.074 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:55.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:55.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:55.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:27:55.114 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:55.114 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:55.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:27:55.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:27:55.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:55.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:27:55.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:27:55.214 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:55.214 -07 000000382 INF: Autofocus start
17-03-18 05:27:55.214 -07 000000382 INF: MeasureProfile start
17-03-18 05:27:55.214 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:55.224 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:55.224 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:55.224 -07 000000382 INF: MeasureProfile done
17-03-18 05:27:55.224 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:27:55.224 -07 000000382 INF: Autofocus finished
17-03-18 05:27:55.424 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:55.424 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:27:55.424 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135632249544952. ----------
17-03-18 05:27:55.434 -07 000000610 INF: Cycle	137	Tile	15	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:55.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28123, sync = True, waitForSettling = True)
17-03-18 05:27:55.434 -07 000000610 INF: Z Motor: Moving to -0.128739 mm, started at -0.135632 mm, distance = 6.89 um
17-03-18 05:27:55.434 -07 000000610 INF: FPGA: Xmit ZDACW 28123\n [Z Motor]
17-03-18 05:27:55.434 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:27:55.444 -07 000000610 INF: FPGA: 'ZDACW 28123' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:55.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:55.444 -07 000000012 INF: FPGA: Recv ZDACR 28123
17-03-18 05:27:55.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:55.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.604 -07 000000608 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:27:55.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.614 -07 000000474 INF: FPGA: Recv ZSGSRD 29334
17-03-18 05:27:55.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.624 -07 000000382 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:27:55.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.634 -07 000000467 INF: FPGA: Recv ZSGSRD 29335
17-03-18 05:27:55.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.644 -07 000000608 INF: FPGA: Recv ZSGSRD 29334
17-03-18 05:27:55.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.654 -07 000000467 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:27:55.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.664 -07 000000474 INF: FPGA: Recv ZSGSRD 29328
17-03-18 05:27:55.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.674 -07 000000382 INF: FPGA: Recv ZSGSRD 29335
17-03-18 05:27:55.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.684 -07 000000474 INF: FPGA: Recv ZSGSRD 29328
17-03-18 05:27:55.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:55.694 -07 000000012 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:27:55.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:55.704 -07 000000581 INF: FPGA: Recv ZPIEZORD 24794
17-03-18 05:27:55.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:55.714 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.9 V.
17-03-18 05:27:55.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29330 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29328 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29326 (-127.9 uncal um), Max = 29335 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:27:55.714 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29330, posNoise = 5, negNoise = 4
17-03-18 05:27:55.714 -07 000000610 INF: Z Motor: After move to -0.128739, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:55.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:27:55.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:55.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:55.714 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:55.714 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:55.714 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:55.714 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:55.714 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:55.714 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:55.714 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:55.714 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:55.714 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:55.714 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:55.724 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:55.724 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:55.724 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:55.724 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:55.734 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:27:55.734 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:27:55.734 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:27:55.734 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:27:55.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28300 150\n [Camera]
17-03-18 05:27:55.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:27:56.374 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:27:56.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:27:56.374 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:56.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:27:56.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:27:56.384 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:56.384 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:56.384 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:27:56.384 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:56.384 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:27:56.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28300 823
17-03-18 05:27:56.724 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 976
17-03-18 05:27:56.754 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:27:56.754 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:27:56.764 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:56.764 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:56.764 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:27:56.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:27:56.774 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:27:56.774 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:27:56.774 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:27:56.774 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:56.774 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:56.774 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:27:56.934 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:27:56.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:27:56.934 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:27:56.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:27:56.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:27:56.934 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:27:56.944 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:27:56.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:27:56.944 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:27:56.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:27:57.124 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:27:57.124 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:27:57.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28300 150' command took 2 ms to send, 1374 ms to get response, and 1384 ms overall
17-03-18 05:27:57.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:27:57.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128745494128984. ------
17-03-18 05:27:57.134 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:57.134 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13511 mm
17-03-18 05:27:57.134 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:27:57.134 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:57.134 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29515, sync = True, waitForSettling = False)
17-03-18 05:27:57.134 -07 000000382 INF: Z Motor: Moving to -0.135111 mm, started at -0.128745 mm, distance = -6.37 um
17-03-18 05:27:57.134 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:27:57.134 -07 000000474 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 05:27:57.144 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:57.144 -07 000000382 INF: FPGA: Xmit ZDACW 29515\n [Z Motor]
17-03-18 05:27:57.144 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:27:57.154 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:57.154 -07 000000382 INF: FPGA: 'ZDACW 29515' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:27:57.154 -07 000000424 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:27:57.164 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:27:57.164 -07 000000474 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:57.164 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:27:57.164 -07 000000474 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:27:57.164 -07 000000474 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:27:57.174 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:57.174 -07 000000625 INF: FPGA: Recv ZDACR 29515
17-03-18 05:27:57.184 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:27:57.184 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:27:57.184 -07 000000382 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:27:57.214 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.001704,
17-03-18 05:27:57.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:27:57.324 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:27:57.324 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:57.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:27:57.334 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:27:57.334 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:57.334 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:27:57.334 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:27:57.334 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:27:57.334 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:27:57.364 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:27:57.364 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:27:57.554 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:27:57.554 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:27:57.604 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:57.614 -07 000000512 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:27:57.614 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:27:57.614 -07 000000474 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:57.614 -07 000000474 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:27:57.614 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 05:27:58.564 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:27:58.564 -07 000000382 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:27:58.574 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:27:58.574 -07 000000474 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:27:58.614 -07 000000474 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:27:58.614 -07 000000474 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:27:58.614 -07 000000474 INF: Y Motor: Moved to 72.3481 after 1479 ms (table move)
17-03-18 05:27:58.614 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135111 mm (DAC = 29515)
17-03-18 05:27:58.614 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.624 -07 000000625 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:27:58.624 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:27:58.624 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.624 -07 000000625 INF: FPGA: Recv ZSGSRD 30321
17-03-18 05:27:58.634 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:27:58.634 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.634 -07 000000625 INF: FPGA: Recv ZSGSRD 30315
17-03-18 05:27:58.644 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.644 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.644 -07 000000625 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:27:58.654 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.654 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.654 -07 000000625 INF: FPGA: Recv ZSGSRD 30322
17-03-18 05:27:58.664 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.664 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.664 -07 000000512 INF: FPGA: Recv ZSGSRD 30326
17-03-18 05:27:58.674 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.674 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.674 -07 000000512 INF: FPGA: Recv ZSGSRD 30324
17-03-18 05:27:58.684 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.684 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.684 -07 000000424 INF: FPGA: Recv ZSGSRD 30323
17-03-18 05:27:58.694 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.694 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.694 -07 000000479 INF: FPGA: Recv ZSGSRD 30323
17-03-18 05:27:58.704 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.704 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:58.704 -07 000000569 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:27:58.714 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.714 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:58.714 -07 000000479 INF: FPGA: Recv ZPIEZORD 26124
17-03-18 05:27:58.724 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:58.724 -07 000000012 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.2 V.
17-03-18 05:27:58.724 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30320 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30322 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30315 (-134.3 uncal um), Max = 30326 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:58.724 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30320, posNoise = 6, negNoise = 5
17-03-18 05:27:58.724 -07 000000012 INF: Z Motor: After move to -0.135111, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:58.724 -07 000000012 INF: Z Motor: Settle wait time = 1483 ms, measure time = 103 ms (allowed 150 ms), total time = 1586 ms
17-03-18 05:27:58.724 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:27:58.774 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 05:27:58.774 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:27:58.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:58.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:58.774 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:58.774 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:58.774 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:27:58.774 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:58.774 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:27:58.774 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:27:58.784 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-18 05:27:58.784 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:27:58.784 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:27:58.784 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:27:58.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:27:58.834 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:27:59.134 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:27:59.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:27:59.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:27:59.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 05:27:59.174 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:27:59.174 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:27:59.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:27:59.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:27:59.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:27:59.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:27:59.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:27:59.274 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:27:59.274 -07 000000569 INF: Autofocus start
17-03-18 05:27:59.274 -07 000000569 INF: MeasureProfile start
17-03-18 05:27:59.274 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:27:59.284 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:27:59.284 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:27:59.284 -07 000000569 INF: MeasureProfile done
17-03-18 05:27:59.284 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:27:59.284 -07 000000569 INF: Autofocus finished
17-03-18 05:27:59.484 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:27:59.484 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:27:59.484 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.135105464149327. ----------
17-03-18 05:27:59.484 -07 000000610 INF: Cycle	137	Tile	16	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:27:59.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28022, sync = True, waitForSettling = True)
17-03-18 05:27:59.494 -07 000000610 INF: Z Motor: Moving to -0.128276 mm, started at -0.135105 mm, distance = 6.83 um
17-03-18 05:27:59.494 -07 000000610 INF: FPGA: Xmit ZDACW 28022\n [Z Motor]
17-03-18 05:27:59.494 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:27:59.504 -07 000000610 INF: FPGA: 'ZDACW 28022' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:27:59.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:27:59.504 -07 000000474 INF: FPGA: Recv ZDACR 28022
17-03-18 05:27:59.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:27:59.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.664 -07 000000474 INF: FPGA: Recv ZSGSRD 29261
17-03-18 05:27:59.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.674 -07 000000012 INF: FPGA: Recv ZSGSRD 29260
17-03-18 05:27:59.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.684 -07 000000479 INF: FPGA: Recv ZSGSRD 29254
17-03-18 05:27:59.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.694 -07 000000474 INF: FPGA: Recv ZSGSRD 29261
17-03-18 05:27:59.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.704 -07 000000467 INF: FPGA: Recv ZSGSRD 29258
17-03-18 05:27:59.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.714 -07 000000467 INF: FPGA: Recv ZSGSRD 29255
17-03-18 05:27:59.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.724 -07 000000467 INF: FPGA: Recv ZSGSRD 29259
17-03-18 05:27:59.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.734 -07 000000474 INF: FPGA: Recv ZSGSRD 29253
17-03-18 05:27:59.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.744 -07 000000467 INF: FPGA: Recv ZSGSRD 29263
17-03-18 05:27:59.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:27:59.754 -07 000000012 INF: FPGA: Recv ZSGSRD 29257
17-03-18 05:27:59.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:27:59.764 -07 000000474 INF: FPGA: Recv ZPIEZORD 24698
17-03-18 05:27:59.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:27:59.774 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -10.0 V.
17-03-18 05:27:59.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29258 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29258 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29253 (-127.5 uncal um), Max = 29263 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:27:59.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29258, posNoise = 5, negNoise = 5
17-03-18 05:27:59.774 -07 000000610 INF: Z Motor: After move to -0.128276, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:27:59.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:27:59.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:27:59.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:27:59.774 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:27:59.774 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:27:59.774 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:27:59.774 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:27:59.774 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:27:59.774 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:27:59.774 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:27:59.774 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:27:59.774 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:27:59.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:27:59.784 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:27:59.784 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:27:59.784 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:27:59.784 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:27:59.794 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:27:59.794 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:27:59.794 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:27:59.794 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:27:59.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28199 150\n [Camera]
17-03-18 05:27:59.994 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:28:00.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:28:00.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:28:00.434 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:00.434 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:00.434 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:28:00.434 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:28:00.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:28:00.434 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:00.434 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:00.434 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:28:00.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28199 823
17-03-18 05:28:00.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:28:00.824 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:28:00.824 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:28:00.824 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:00.834 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:28:00.834 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:28:00.834 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:00.834 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:28:00.834 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:28:00.834 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:28:00.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:28:00.984 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:28:00.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:28:00.984 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:00.984 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:00.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:28:00.994 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:28:00.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:28:00.994 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:00.994 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:00.994 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:28:01.174 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:28:01.174 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:28:01.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28199 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:28:01.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:28:01.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.128282950854777. ------
17-03-18 05:28:01.304 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13492 mm
17-03-18 05:28:01.304 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:28:01.304 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:28:01.304 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:28:01.304 -07 000000479 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 05:28:01.314 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:01.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:28:01.384 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:28:01.384 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:01.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:28:01.394 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:28:01.394 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:01.394 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:28:01.394 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:28:01.394 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:28:01.404 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:28:01.404 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29472, sync = True, waitForSettling = False)
17-03-18 05:28:01.404 -07 000000474 INF: Z Motor: Moving to -0.134914 mm, started at -0.128283 mm, distance = -6.63 um
17-03-18 05:28:01.404 -07 000000474 INF: FPGA: Xmit ZDACW 29472\n [Z Motor]
17-03-18 05:28:01.414 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:28:01.414 -07 000000012 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:28:01.414 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:28:01.414 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 94 ms to get response, and 109 ms overall
17-03-18 05:28:01.414 -07 000000479 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:01.414 -07 000000479 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:28:01.414 -07 000000479 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:28:01.414 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:28:01.414 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 103 ms to get response, and 111 ms overall
17-03-18 05:28:01.414 -07 000000474 INF: FPGA: 'ZDACW 29472' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 05:28:01.424 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:28:01.434 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:28:01.434 -07 000000502 INF: FPGA: Recv ZDACR 29472
17-03-18 05:28:01.444 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:28:01.444 -07 000000474 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:28:01.624 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:28:01.624 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 05:28:01.764 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:01.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:28:01.794 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:28:01.794 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 05:28:01.844 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:01.844 -07 000000455 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:28:01.854 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:28:01.854 -07 000000479 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:01.854 -07 000000479 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:28:01.854 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec
17-03-18 05:28:02.594 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.02213,
17-03-18 05:28:02.804 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:02.804 -07 000000579 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:28:02.814 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:28:02.814 -07 000000479 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:02.844 -07 000000479 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:28:02.844 -07 000000479 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:28:02.844 -07 000000479 INF: Y Motor: Moved to 73.1748 after 1543 ms (table move)
17-03-18 05:28:02.854 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134914 mm (DAC = 29472)
17-03-18 05:28:02.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.854 -07 000000479 INF: FPGA: Recv ZSGSRD 30295
17-03-18 05:28:02.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:28:02.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.864 -07 000000579 INF: FPGA: Recv ZSGSRD 30290
17-03-18 05:28:02.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.874 -07 000000479 INF: FPGA: Recv ZSGSRD 30290
17-03-18 05:28:02.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.884 -07 000000579 INF: FPGA: Recv ZSGSRD 30285
17-03-18 05:28:02.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.894 -07 000000479 INF: FPGA: Recv ZSGSRD 30296
17-03-18 05:28:02.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.904 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30285
17-03-18 05:28:02.914 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.914 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.914 -07 000000502 INF: FPGA: Recv ZSGSRD 30285
17-03-18 05:28:02.924 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.924 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30289
17-03-18 05:28:02.934 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.934 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.934 -07 000000479 INF: FPGA: Recv ZSGSRD 30292
17-03-18 05:28:02.944 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.944 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:02.944 -07 000000474 INF: FPGA: Recv ZSGSRD 30296
17-03-18 05:28:02.954 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.954 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:28:02.954 -07 000000479 INF: FPGA: Recv ZPIEZORD 26107
17-03-18 05:28:02.964 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:02.964 -07 000000467 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.2 V.
17-03-18 05:28:02.964 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30290 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30290 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30285 (-134.1 uncal um), Max = 30296 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:28:02.964 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30290, posNoise = 6, negNoise = 5
17-03-18 05:28:02.964 -07 000000467 INF: Z Motor: After move to -0.134914, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:28:02.964 -07 000000467 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:28:02.964 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:28:03.014 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-18 05:28:03.014 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:28:03.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:28:03.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:28:03.014 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:28:03.014 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:28:03.014 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:28:03.014 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:28:03.014 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:28:03.014 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:28:03.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:28:03.024 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:28:03.024 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:28:03.024 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:28:03.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:28:03.074 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:28:03.374 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:28:03.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:28:03.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:28:03.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:28:03.414 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:28:03.414 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:28:03.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:28:03.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:28:03.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:03.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:28:03.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:28:03.514 -07 000000618 INF: Autofocus start
17-03-18 05:28:03.514 -07 000000618 INF: MeasureProfile start
17-03-18 05:28:03.514 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:28:03.514 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:28:03.524 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:28:03.524 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:28:03.524 -07 000000618 INF: MeasureProfile done
17-03-18 05:28:03.524 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:28:03.524 -07 000000618 INF: Autofocus finished
17-03-18 05:28:03.724 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:28:03.724 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:28:03.724 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134912737785074. ----------
17-03-18 05:28:03.734 -07 000000610 INF: Cycle	137	Tile	17	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:28:03.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27967, sync = True, waitForSettling = True)
17-03-18 05:28:03.734 -07 000000610 INF: Z Motor: Moving to -0.128025 mm, started at -0.134913 mm, distance = 6.89 um
17-03-18 05:28:03.734 -07 000000610 INF: FPGA: Xmit ZDACW 27967\n [Z Motor]
17-03-18 05:28:03.734 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:28:03.744 -07 000000610 INF: FPGA: 'ZDACW 27967' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:28:03.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:28:03.744 -07 000000479 INF: FPGA: Recv ZDACR 27967
17-03-18 05:28:03.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:28:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29221
17-03-18 05:28:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:28:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.914 -07 000000579 INF: FPGA: Recv ZSGSRD 29221
17-03-18 05:28:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29218
17-03-18 05:28:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29218
17-03-18 05:28:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.944 -07 000000012 INF: FPGA: Recv ZSGSRD 29221
17-03-18 05:28:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.954 -07 000000625 INF: FPGA: Recv ZSGSRD 29219
17-03-18 05:28:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29218
17-03-18 05:28:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.974 -07 000000012 INF: FPGA: Recv ZSGSRD 29219
17-03-18 05:28:03.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.984 -07 000000455 INF: FPGA: Recv ZSGSRD 29220
17-03-18 05:28:03.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:03.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:03.994 -07 000000474 INF: FPGA: Recv ZSGSRD 29216
17-03-18 05:28:04.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:04.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:28:04.004 -07 000000625 INF: FPGA: Recv ZPIEZORD 24681
17-03-18 05:28:04.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:04.014 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.9 V.
17-03-18 05:28:04.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29219 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29219 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29216 (-127.2 uncal um), Max = 29221 (-127.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:28:04.014 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29219, posNoise = 2, negNoise = 3
17-03-18 05:28:04.014 -07 000000610 INF: Z Motor: After move to -0.128025, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:28:04.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:28:04.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:28:04.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:28:04.014 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:28:04.014 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:28:04.014 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:28:04.014 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:28:04.014 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:28:04.014 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:28:04.014 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:28:04.014 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:28:04.014 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:28:04.014 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:28:04.024 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:28:04.024 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:28:04.024 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:28:04.024 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:28:04.034 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:28:04.034 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:28:04.034 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:28:04.034 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:28:04.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28144 150\n [Camera]
17-03-18 05:28:04.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:28:04.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:28:04.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:28:04.674 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:04.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:28:04.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:28:04.674 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:04.674 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:04.674 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:28:04.684 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:04.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:28:04.864 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28144 823
17-03-18 05:28:05.014 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:28:05.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:28:05.054 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:28:05.054 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:05.054 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:28:05.054 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 05:28:05.054 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:28:05.054 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:05.064 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:28:05.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:28:05.064 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:28:05.224 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:28:05.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:28:05.224 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:05.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:28:05.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:28:05.234 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:05.234 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:05.234 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:28:05.234 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:05.234 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 05:28:05.414 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:28:05.414 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:28:05.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28144 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:28:05.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:28:05.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.128032406581248. ------
17-03-18 05:28:05.424 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:28:05.424 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13388 mm
17-03-18 05:28:05.424 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:28:05.424 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:28:05.424 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:28:05.434 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:05.634 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:28:05.634 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:28:05.634 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:05.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:28:05.754 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 05:28:05.754 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:05.764 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 121 ms.
17-03-18 05:28:05.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 05:28:05.764 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:28:05.764 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-18 05:28:05.774 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29247, sync = True, waitForSettling = False)
17-03-18 05:28:05.774 -07 000000455 INF: Z Motor: Moving to -0.133884 mm, started at -0.128032 mm, distance = -5.85 um
17-03-18 05:28:05.774 -07 000000455 INF: FPGA: Xmit ZDACW 29247\n [Z Motor]
17-03-18 05:28:05.774 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:28:05.774 -07 000000479 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:28:05.774 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:28:05.774 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 338 ms to get response, and 350 ms overall
17-03-18 05:28:05.774 -07 000000012 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:05.774 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 348 ms to get response, and 353 ms overall
17-03-18 05:28:05.784 -07 000000455 INF: FPGA: 'ZDACW 29247' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:28:05.784 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:28:05.784 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:28:05.784 -07 000000012 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:28:05.784 -07 000000479 INF: FPGA: Recv ZDACR 29247
17-03-18 05:28:05.794 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:05.794 -07 000000455 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 05:28:05.794 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:28:05.804 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:28:05.994 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:28:05.994 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 213 ms overall
17-03-18 05:28:06.174 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:28:06.174 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 05:28:06.224 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:06.224 -07 000000455 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:28:06.234 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:28:06.234 -07 000000012 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:06.234 -07 000000012 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:28:06.234 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.848 mm, average velocity = 2.141 mm/sec
17-03-18 05:28:06.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:06.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:28:07.184 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:07.184 -07 000000424 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:28:07.194 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.194 -07 000000012 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:07.214 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:28:07.214 -07 000000012 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:28:07.214 -07 000000012 INF: Y Motor: Moved to 74.0068 after 1790 ms (table move)
17-03-18 05:28:07.224 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133884 mm (DAC = 29247)
17-03-18 05:28:07.224 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.224 -07 000000424 INF: FPGA: Recv ZSGSRD 30129
17-03-18 05:28:07.234 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:28:07.234 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.234 -07 000000608 INF: FPGA: Recv ZSGSRD 30126
17-03-18 05:28:07.244 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.244 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.244 -07 000000455 INF: FPGA: Recv ZSGSRD 30123
17-03-18 05:28:07.254 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.254 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.254 -07 000000474 INF: FPGA: Recv ZSGSRD 30128
17-03-18 05:28:07.264 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.264 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.264 -07 000000501 INF: FPGA: Recv ZSGSRD 30128
17-03-18 05:28:07.274 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.274 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.274 -07 000000474 INF: FPGA: Recv ZSGSRD 30131
17-03-18 05:28:07.284 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.284 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.284 -07 000000012 INF: FPGA: Recv ZSGSRD 30137
17-03-18 05:28:07.294 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.294 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.294 -07 000000608 INF: FPGA: Recv ZSGSRD 30133
17-03-18 05:28:07.304 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.304 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.304 -07 000000512 INF: FPGA: Recv ZSGSRD 30139
17-03-18 05:28:07.314 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.324 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:07.324 -07 000000012 INF: FPGA: Recv ZSGSRD 30132
17-03-18 05:28:07.334 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:28:07.334 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:28:07.334 -07 000000512 INF: FPGA: Recv ZPIEZORD 25893
17-03-18 05:28:07.344 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:07.344 -07 000000625 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.463 V. Piezo Error = -9.3 V.
17-03-18 05:28:07.344 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30131 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30130 (-133.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30123 (-133.1 uncal um), Max = 30139 (-133.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:28:07.344 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30131, posNoise = 8, negNoise = 8
17-03-18 05:28:07.344 -07 000000625 INF: Z Motor: After move to -0.133884, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:28:07.344 -07 000000625 INF: Z Motor: Settle wait time = 1450 ms, measure time = 118 ms (allowed 150 ms), total time = 1568 ms
17-03-18 05:28:07.344 -07 000000625 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 05:28:07.384 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1955 ms
17-03-18 05:28:07.384 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:28:07.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:28:07.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:28:07.384 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:28:07.384 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:28:07.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:28:07.384 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:28:07.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:28:07.384 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:28:07.394 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:28:07.394 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:28:07.394 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:28:07.394 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:28:07.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:28:07.444 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:28:07.744 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:28:07.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:28:07.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:28:07.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) start.
17-03-18 05:28:07.784 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:28:07.784 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 05:28:07.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:28:07.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576608896, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:28:07.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:07.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:28:07.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 05:28:07.884 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:28:07.884 -07 000000501 INF: Autofocus start
17-03-18 05:28:07.884 -07 000000501 INF: MeasureProfile start
17-03-18 05:28:07.884 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:28:07.894 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:28:07.894 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:28:07.894 -07 000000501 INF: MeasureProfile done
17-03-18 05:28:07.894 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:28:07.894 -07 000000501 INF: Autofocus finished
17-03-18 05:28:07.954 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.031682,
17-03-18 05:28:08.094 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:28:08.094 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 05:28:08.094 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133891288054534. ----------
17-03-18 05:28:08.104 -07 000000610 INF: Cycle	137	Tile	18	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:28:08.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27771, sync = True, waitForSettling = True)
17-03-18 05:28:08.104 -07 000000610 INF: Z Motor: Moving to -0.127127 mm, started at -0.133891 mm, distance = 6.76 um
17-03-18 05:28:08.104 -07 000000610 INF: FPGA: Xmit ZDACW 27771\n [Z Motor]
17-03-18 05:28:08.104 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:28:08.114 -07 000000610 INF: FPGA: 'ZDACW 27771' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:28:08.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:28:08.114 -07 000000512 INF: FPGA: Recv ZDACR 27771
17-03-18 05:28:08.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:28:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.274 -07 000000424 INF: FPGA: Recv ZSGSRD 29074
17-03-18 05:28:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:28:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.284 -07 000000012 INF: FPGA: Recv ZSGSRD 29078
17-03-18 05:28:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.294 -07 000000012 INF: FPGA: Recv ZSGSRD 29074
17-03-18 05:28:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.304 -07 000000606 INF: FPGA: Recv ZSGSRD 29080
17-03-18 05:28:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.314 -07 000000606 INF: FPGA: Recv ZSGSRD 29086
17-03-18 05:28:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29072
17-03-18 05:28:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.334 -07 000000455 INF: FPGA: Recv ZSGSRD 29075
17-03-18 05:28:08.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.344 -07 000000012 INF: FPGA: Recv ZSGSRD 29080
17-03-18 05:28:08.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.354 -07 000000606 INF: FPGA: Recv ZSGSRD 29074
17-03-18 05:28:08.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:08.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29075
17-03-18 05:28:08.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:28:08.374 -07 000000012 INF: FPGA: Recv ZPIEZORD 24519
17-03-18 05:28:08.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:08.384 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.238 V. Piezo Error = -10.0 V.
17-03-18 05:28:08.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29077 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29075 (-126.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29072 (-126.3 uncal um), Max = 29086 (-126.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:28:08.384 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29077, posNoise = 9, negNoise = 5
17-03-18 05:28:08.384 -07 000000610 INF: Z Motor: After move to -0.127127, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:28:08.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:28:08.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:28:08.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:28:08.384 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:28:08.384 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:28:08.384 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:28:08.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:28:08.384 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:28:08.384 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:28:08.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:28:08.384 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:28:08.384 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:28:08.384 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:28:08.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:28:08.394 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:28:08.394 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:28:08.394 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:28:08.394 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:28:08.404 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:28:08.404 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:28:08.404 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:28:08.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 27948 150\n [Camera]
17-03-18 05:28:08.604 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:28:09.044 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:28:09.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:28:09.044 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:09.044 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:28:09.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:28:09.044 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:09.044 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:09.044 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) start.
17-03-18 05:28:09.054 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:09.054 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:28:09.234 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27948 823
17-03-18 05:28:09.384 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:28:09.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 595690280, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:28:09.444 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:28:09.444 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:09.444 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:28:09.444 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:28:09.444 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:09.444 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:28:09.444 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:28:09.454 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:28:09.454 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:28:09.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1185
17-03-18 05:28:09.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1185
17-03-18 05:28:09.594 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:09.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1185
17-03-18 05:28:09.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1185
17-03-18 05:28:09.604 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:09.604 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:09.604 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 05:28:09.604 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:09.604 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 05:28:09.784 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:28:09.784 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:28:09.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 27948 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:28:09.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:28:09.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.127120168457118. ------
17-03-18 05:28:09.794 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:28:09.794 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13359 mm
17-03-18 05:28:09.794 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:28:10.004 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:28:10.004 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:28:10.004 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:10.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 05:28:10.004 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:28:10.004 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:10.014 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:28:10.014 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:28:10.014 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:28:10.024 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 05:28:10.024 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:28:10.024 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 222 ms to get response, and 229 ms overall
17-03-18 05:28:10.024 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:28:10.024 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29182, sync = True, waitForSettling = False)
17-03-18 05:28:10.024 -07 000000461 INF: Z Motor: Moving to -0.133587 mm, started at -0.127120 mm, distance = -6.47 um
17-03-18 05:28:10.024 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:28:10.024 -07 000000581 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:28:10.034 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:10.034 -07 000000579 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:28:10.044 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:28:10.044 -07 000000581 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:10.044 -07 000000461 INF: FPGA: Xmit ZDACW 29182\n [Z Motor]
17-03-18 05:28:10.044 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:28:10.044 -07 000000581 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:28:10.044 -07 000000581 INF: Y Motor: Moving 1352 steps-32
17-03-18 05:28:10.054 -07 000000461 INF: FPGA: 'ZDACW 29182' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:28:10.054 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:28:10.054 -07 000000606 INF: FPGA: Recv ZDACR 29182
17-03-18 05:28:10.064 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:28:10.064 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:10.064 -07 000000461 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 05:28:10.224 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:28:10.224 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 05:28:10.434 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:28:10.434 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:28:10.464 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:10.474 -07 000000467 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:28:10.474 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:28:10.474 -07 000000581 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:10.474 -07 000000581 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:28:10.474 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.147 mm/sec
17-03-18 05:28:11.424 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:11.424 -07 000000606 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:28:11.434 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:28:11.434 -07 000000581 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:11.454 -07 000000581 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:28:11.454 -07 000000581 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:28:11.454 -07 000000581 INF: Y Motor: Moved to 74.8306 after 1425 ms (table move)
17-03-18 05:28:11.454 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133587 mm (DAC = 29182)
17-03-18 05:28:11.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.454 -07 000000579 INF: FPGA: Recv ZSGSRD 30087
17-03-18 05:28:11.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:28:11.464 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.464 -07 000000579 INF: FPGA: Recv ZSGSRD 30079
17-03-18 05:28:11.474 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.474 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.474 -07 000000606 INF: FPGA: Recv ZSGSRD 30085
17-03-18 05:28:11.484 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.484 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.484 -07 000000606 INF: FPGA: Recv ZSGSRD 30081
17-03-18 05:28:11.494 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.494 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.494 -07 000000606 INF: FPGA: Recv ZSGSRD 30084
17-03-18 05:28:11.504 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.504 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.504 -07 000000455 INF: FPGA: Recv ZSGSRD 30087
17-03-18 05:28:11.514 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.514 -07 000000455 INF: FPGA: Recv ZSGSRD 30084
17-03-18 05:28:11.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.524 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.524 -07 000000606 INF: FPGA: Recv ZSGSRD 30080
17-03-18 05:28:11.534 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30083
17-03-18 05:28:11.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:11.544 -07 000000606 INF: FPGA: Recv ZSGSRD 30085
17-03-18 05:28:11.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.554 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:28:11.554 -07 000000606 INF: FPGA: Recv ZPIEZORD 25857
17-03-18 05:28:11.564 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:11.564 -07 000000424 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.3 V.
17-03-18 05:28:11.564 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30084 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30084 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30079 (-132.8 uncal um), Max = 30087 (-132.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:28:11.564 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30084, posNoise = 3, negNoise = 5
17-03-18 05:28:11.564 -07 000000424 INF: Z Motor: After move to -0.133587, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:28:11.564 -07 000000424 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-18 05:28:11.564 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:28:11.614 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1816 ms
17-03-18 05:28:11.614 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:28:11.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:28:11.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:28:11.614 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:28:11.614 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:28:11.614 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:28:11.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:28:11.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:28:11.614 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:28:11.624 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:28:11.624 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:28:11.634 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:28:11.634 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:28:11.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:28:11.684 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:28:11.764 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:11.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 136. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:28:11.984 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:28:11.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:28:11.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:28:11.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-18 05:28:12.024 -07 000000579 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:28:12.024 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:28:12.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 387 ms overall
17-03-18 05:28:12.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:28:12.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:12.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:28:12.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:28:12.124 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:28:12.124 -07 000000606 INF: Autofocus start
17-03-18 05:28:12.124 -07 000000606 INF: MeasureProfile start
17-03-18 05:28:12.134 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:28:12.134 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:28:12.134 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:28:12.144 -07 000000606 INF: MeasureProfile done
17-03-18 05:28:12.144 -07 000000606 INF: X=-6  Z correction [um]=-0.03260989
17-03-18 05:28:12.144 -07 000000606 INF: Autofocus finished
17-03-18 05:28:12.334 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:28:12.334 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:28:12.344 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133589350083872. ----------
17-03-18 05:28:12.344 -07 000000610 INF: Cycle	137	Tile	19	Exposure Settings		A	438	G	211	T	211	C	438
17-03-18 05:28:12.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27688, sync = True, waitForSettling = True)
17-03-18 05:28:12.344 -07 000000610 INF: Z Motor: Moving to -0.126748 mm, started at -0.133589 mm, distance = 6.84 um
17-03-18 05:28:12.344 -07 000000610 INF: FPGA: Xmit ZDACW 27688\n [Z Motor]
17-03-18 05:28:12.344 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:28:12.354 -07 000000610 INF: FPGA: 'ZDACW 27688' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:28:12.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:28:12.354 -07 000000012 INF: FPGA: Recv ZDACR 27688
17-03-18 05:28:12.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:28:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.514 -07 000000618 INF: FPGA: Recv ZSGSRD 29014
17-03-18 05:28:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.524 -07 000000012 INF: FPGA: Recv ZSGSRD 29013
17-03-18 05:28:12.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29012
17-03-18 05:28:12.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.544 -07 000000502 INF: FPGA: Recv ZSGSRD 29017
17-03-18 05:28:12.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.554 -07 000000012 INF: FPGA: Recv ZSGSRD 29028
17-03-18 05:28:12.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.564 -07 000000467 INF: FPGA: Recv ZSGSRD 29017
17-03-18 05:28:12.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.574 -07 000000502 INF: FPGA: Recv ZSGSRD 29022
17-03-18 05:28:12.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.584 -07 000000581 INF: FPGA: Recv ZSGSRD 29023
17-03-18 05:28:12.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29020
17-03-18 05:28:12.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:28:12.604 -07 000000618 INF: FPGA: Recv ZSGSRD 29024
17-03-18 05:28:12.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:28:12.614 -07 000000424 INF: FPGA: Recv ZPIEZORD 24501
17-03-18 05:28:12.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:12.624 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.225 V. Piezo Error = -9.9 V.
17-03-18 05:28:12.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29019 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29018 (-126.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29012 (-125.9 uncal um), Max = 29028 (-126.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:28:12.624 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29019, posNoise = 9, negNoise = 7
17-03-18 05:28:12.624 -07 000000610 INF: Z Motor: After move to -0.126748, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:28:12.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:28:12.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:28:12.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:28:12.624 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:28:12.624 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:28:12.624 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:28:12.624 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:28:12.624 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:28:12.624 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:28:12.624 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:28:12.624 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:28:12.624 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:28:12.624 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:28:12.634 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:28:12.634 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:28:12.634 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:28:12.634 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:28:12.644 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:28:12.644 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:28:12.644 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:28:12.644 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:28:12.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 27864 150\n [Camera]
17-03-18 05:28:12.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:28:13.284 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-18 05:28:13.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-18 05:28:13.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-18 05:28:13.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-18 05:28:13.284 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:13.284 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:13.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:28:13.284 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:13.284 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:13.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:28:13.324 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.000345,
17-03-18 05:28:13.474 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27864 823
17-03-18 05:28:13.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-18 05:28:13.674 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:28:13.674 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:28:13.674 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:13.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:28:13.674 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:28:13.674 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:13.684 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:28:13.684 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:28:13.684 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:28:13.684 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:28:13.834 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-18 05:28:13.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-18 05:28:13.834 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:28:13.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:28:13.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:28:13.834 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-18 05:28:13.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-18 05:28:13.834 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:28:13.834 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:28:13.834 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:28:14.024 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-18 05:28:14.024 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:28:14.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 27864 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-18 05:28:14.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:28:14.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:28:14.234 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:14.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:28:14.234 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:28:14.234 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:28:14.234 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:28:14.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:28:14.364 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 05:28:14.364 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:28:14.374 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-18 05:28:14.404 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:28:14.404 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:28:14.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:28:14.464 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 05:28:14.464 -07 000000610 INF: Imaging Cycle 137: ScanTilesCommand Cycle 137 time end. Duration was 172161 ms.
17-03-18 05:28:14.464 -07 000000610 INF: =================== Cycle #137 ===================
17-03-18 05:28:14.464 -07 000000610 INF: ===================  ===================
17-03-18 05:28:14.464 -07 000000625 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:28:14.474 -07 000000569 INF: FPGA: Recv EXLED1ADCR 27
17-03-18 05:28:14.474 -07 000000625 INF: FPGA: 'EXLED1ADCR' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:28:14.474 -07 000000625 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-18 05:28:14.474 -07 000000625 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 137, FrontChillerTemperature: 4.000345, FrontChillerHeatSinkTemperature: 0.230151, AmbientTemperature: 18.69714, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.3752, GreenLEDSensorTemperature: 27.21573, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-18 05:28:14.584 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.