17-03-18 05:28:14.634 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:14.634 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:28:14.634 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 05:28:14.634 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:14.644 -07 000000579 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:28:14.654 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:28:14.654 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:14.654 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:28:14.654 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:28:14.654 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:28:14.764 -07 000000502 INF: FPGA: Recv YMVTO 154378 874
17-03-18 05:28:14.774 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 115 ms overall
17-03-18 05:28:14.774 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:28:14.774 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 874 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 05:28:14.774 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 05:28:16.764 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:16.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1861, R2=1933, Total=3794. Warn if over 250 bubbles per interval.
17-03-18 05:28:17.774 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:28:17.774 -07 000000625 INF: FPGA: Recv YRDPOS 154379
17-03-18 05:28:17.784 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:28:17.784 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:28:17.804 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:28:17.804 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:28:17.804 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3167 ms
17-03-18 05:28:17.814 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 60° ===================
17-03-18 05:28:17.814 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:28:17.814 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:28:17.814 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:28:17.824 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:28:17.824 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:28:17.824 -07 000000479 INF: FPGA: Recv TEC2EN 
17-03-18 05:28:17.834 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:17.834 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 60° ===================
17-03-18 05:28:17.834 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:17.834 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:28:17.834 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:17.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:28:17.864 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:28:17.864 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:28:18.164 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:28:18.184 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:28:18.184 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:28:18.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:18.254 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:28:18.254 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:28:18.354 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:18.354 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:28:18.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:18.464 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:28:18.464 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:28:18.464 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:28:18.594 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:28:18.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:18.694 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.969015,
17-03-18 05:28:21.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:21.764 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 05:28:21.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1862, R2=1933, Total=3795. Warn if over 250 bubbles per interval.
17-03-18 05:28:21.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:22.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:22.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:22.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:22.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:22.694 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:28:22.694 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:22.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:22.854 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:28:22.854 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:28:22.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:23.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:28:23.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:28:23.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:28:23.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:28:23.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:23.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:23.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:23.634 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:28:23.634 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:24.064 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.959467,
17-03-18 05:28:24.854 -07 000000610 INF: AsyncDelayTimer waited 1206ms
17-03-18 05:28:24.854 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:28:24.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:24.874 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:28:24.874 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:28:24.874 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:28:25.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:28:25.034 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:28:25.034 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:28:25.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:25.104 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:28:25.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:28:25.204 -07 000000610 INF: =================== Cycle #138, Pumping Reagent CMS (4) ===================
17-03-18 05:28:25.204 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:28:25.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:25.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:28:25.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:28:25.234 -07 000000610 INF: =================== Cycle #138, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:28:25.364 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:28:25.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:26.764 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 05:28:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1863, R2=1935, Total=3798. Warn if over 250 bubbles per interval.
17-03-18 05:28:26.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:26.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:27.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:27.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:27.324 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:28:27.324 -07 000000610 INF: =================== Cycle #138, Pumping Reagent CMS (4) ===================
17-03-18 05:28:27.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:27.484 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:28:27.484 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:28:27.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:27.644 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:28:27.644 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:28:27.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:28:27.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:28:27.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:28.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:28.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:28.264 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:28:28.264 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:29.434 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.018051,
17-03-18 05:28:29.484 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:28:29.484 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:28:29.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:29.504 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:28:29.504 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:28:29.504 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:28:29.654 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:28:29.674 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:28:29.674 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:28:29.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:29.744 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:28:29.744 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:28:29.844 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:29.844 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:28:29.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:29.874 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:28:29.874 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:28:29.874 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:28:30.004 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:28:30.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:30.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:30.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:30.944 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:28:30.944 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:31.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:31.104 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:28:31.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:28:31.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:31.264 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:28:31.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:28:31.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:28:31.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:28:31.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:31.764 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:31.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1863, R2=1935, Total=3798. Warn if over 250 bubbles per interval.
17-03-18 05:28:31.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:31.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:31.884 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:28:31.884 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:31.884 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:28:31.884 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:28:31.884 -07 000000625 INF: WaitCommand(10000) start
17-03-18 05:28:33.104 -07 000000382 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:28:33.104 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-18 05:28:33.134 -07 000000382 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:28:33.134 -07 000000382 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:28:33.264 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:28:33.304 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:34.814 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.0344,
17-03-18 05:28:34.834 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:34.864 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:35.284 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:35.314 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:35.314 -07 000000382 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:28:35.314 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:28:35.314 -07 000000382 INF: ===================  ===================
17-03-18 05:28:36.764 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:36.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1863, R2=1935, Total=3798. Warn if over 250 bubbles per interval.
17-03-18 05:28:40.174 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.016692,
17-03-18 05:28:41.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:41.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1863, R2=1935, Total=3798. Warn if over 250 bubbles per interval.
17-03-18 05:28:41.894 -07 000000625 INF: WaitCommand(10000) end
17-03-18 05:28:41.894 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:41.894 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:28:41.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:41.924 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:28:41.924 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:28:41.924 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:28:42.054 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:28:42.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:45.544 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.050752,
17-03-18 05:28:46.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:28:46.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1864, R2=1936, Total=3800. Warn if over 250 bubbles per interval.
17-03-18 05:28:48.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:48.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:48.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:48.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:49.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:49.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:49.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:49.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:50.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:50.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:50.054 -07 000000610 INF: LanePump: Waited 7961 ms for pump motion to complete
17-03-18 05:28:50.054 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:50.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:50.214 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:28:50.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:28:50.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:50.374 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:28:50.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:28:50.374 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:28:50.504 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:28:50.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:50.914 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.015368,
17-03-18 05:28:50.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:50.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:50.994 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:28:50.994 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:51.764 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 05:28:51.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:28:52.214 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:28:52.214 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:28:52.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:52.234 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:28:52.234 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:28:52.234 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:28:52.444 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:28:52.464 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:28:52.464 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:28:52.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:52.534 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:28:52.534 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:28:52.634 -07 000000610 INF: =================== Cycle #138, Pumping Reagent IMT (1) ===================
17-03-18 05:28:52.634 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:28:52.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:52.664 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:28:52.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:28:52.664 -07 000000610 INF: =================== Cycle #138, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:28:52.794 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:28:52.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:54.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:54.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:54.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:54.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:54.754 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:28:54.754 -07 000000610 INF: =================== Cycle #138, Pumping Reagent IMT (1) ===================
17-03-18 05:28:54.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:54.914 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:28:54.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:28:55.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:55.074 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:28:55.074 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:28:55.074 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:28:55.204 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:28:55.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:55.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:55.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:55.694 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:28:55.694 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:56.284 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.016692,
17-03-18 05:28:56.764 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:28:56.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:28:56.914 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:28:56.914 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:28:56.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:56.934 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:28:56.934 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:28:56.934 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:28:57.164 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:28:57.184 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:28:57.184 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:28:57.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:28:57.254 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:28:57.254 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:28:57.354 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:57.354 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:28:57.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:57.384 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:28:57.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:28:57.384 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:28:57.514 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:28:57.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:28:58.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:58.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:58.454 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:28:58.454 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:28:58.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:58.614 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:28:58.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:28:58.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:28:58.774 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:28:58.774 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:28:58.774 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:28:58.904 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:28:58.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:59.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:28:59.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:28:59.394 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:28:59.394 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:59.394 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 65° ===================
17-03-18 05:28:59.394 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:28:59.394 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:28:59.394 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:28:59.404 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:28:59.404 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:28:59.404 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 05:28:59.414 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:28:59.414 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 65° ===================
17-03-18 05:28:59.414 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:28:59.414 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:29:01.654 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.978563,
17-03-18 05:29:01.764 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:01.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:07.314 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:07.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:07.624 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.971733,
17-03-18 05:29:11.764 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:11.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:12.984 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.970374,
17-03-18 05:29:16.764 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:16.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:18.354 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.985358,
17-03-18 05:29:21.764 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:23.724 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.959467,
17-03-18 05:29:26.764 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:26.764 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:29.104 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.999021,
17-03-18 05:29:29.424 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:29:29.424 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:29:29.424 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:29:29.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:29:29.554 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:29:29.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:29:29.554 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:29:29.684 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:29:29.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:29:30.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:29:30.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:29:30.294 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 05:29:30.294 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:29:30.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:29:30.454 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:29:30.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:29:30.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:29:30.614 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:29:30.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:29:30.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:29:30.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:29:30.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:29:31.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:29:31.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:29:31.234 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:29:31.234 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:29:31.234 -07 000000455 INF: WaitCommand(30000) start
17-03-18 05:29:31.234 -07 000000611 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:29:31.234 -07 000000611 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:29:31.764 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:32.454 -07 000000611 INF: AsyncDelayTimer waited 1215ms
17-03-18 05:29:32.454 -07 000000611 INF: LanePump: Xmit /1?\r
17-03-18 05:29:32.484 -07 000000611 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:29:32.484 -07 000000611 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:29:32.614 -07 000000611 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:29:32.654 -07 000000611 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:29:34.464 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.999021,
17-03-18 05:29:34.994 -07 000000611 INF: LanePump: Xmit /1Q\r
17-03-18 05:29:35.024 -07 000000611 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:29:35.444 -07 000000611 INF: LanePump: Xmit /1Q\r
17-03-18 05:29:35.474 -07 000000611 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:29:35.474 -07 000000611 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:29:35.474 -07 000000611 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:29:35.474 -07 000000611 INF: ===================  ===================
17-03-18 05:29:36.764 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:39.834 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.993549,
17-03-18 05:29:41.774 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:45.204 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.003063,
17-03-18 05:29:46.774 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:46.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:50.584 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.007176,
17-03-18 05:29:51.774 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:29:55.944 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.999021,
17-03-18 05:29:56.774 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:29:56.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:30:01.244 -07 000000455 INF: WaitCommand(30000) end
17-03-18 05:30:01.244 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 22° ===================
17-03-18 05:30:01.244 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:30:01.244 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:30:01.244 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:30:01.254 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:30:01.254 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:30:01.254 -07 000000606 INF: FPGA: Recv TEC2EN 
17-03-18 05:30:01.264 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:01.264 -07 000000610 INF: =================== Cycle #138, Flow Cell Temp 22° ===================
17-03-18 05:30:01.264 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:30:01.264 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:30:01.264 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:30:01.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:01.304 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:30:01.304 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:30:01.304 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:30:01.314 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.994908,
17-03-18 05:30:01.434 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:30:01.474 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:01.774 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:01.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1866, R2=1938, Total=3804. Warn if over 250 bubbles per interval.
17-03-18 05:30:04.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:04.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:05.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:05.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:05.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:05.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:05.534 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:30:05.534 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:30:05.664 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:05.694 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:30:05.694 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:30:05.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:05.854 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:30:05.854 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:30:05.854 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:30:05.984 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:30:06.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:06.444 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:06.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:06.474 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:30:06.474 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:30:06.684 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.99219,
17-03-18 05:30:07.314 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 05:30:07.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:07.694 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:30:07.694 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:30:07.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:30:07.714 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:30:07.714 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:30:07.714 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:30:07.864 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:30:07.884 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:30:07.884 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:30:07.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:30:07.954 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:30:07.954 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:30:08.054 -07 000000610 INF: =================== Cycle #138, Pumping Reagent USM (2) ===================
17-03-18 05:30:08.054 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:30:08.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:08.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:30:08.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:30:08.084 -07 000000610 INF: =================== Cycle #138, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:30:08.214 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:30:08.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:09.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:09.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:10.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:10.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:10.174 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 05:30:10.174 -07 000000610 INF: =================== Cycle #138, Pumping Reagent USM (2) ===================
17-03-18 05:30:10.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:10.334 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:30:10.334 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:30:10.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:10.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:30:10.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:30:10.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:30:10.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:30:10.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:11.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:11.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:11.114 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:30:11.114 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:30:11.774 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:11.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:12.054 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.997626,
17-03-18 05:30:12.334 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 05:30:12.334 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:30:12.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:30:12.354 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:30:12.354 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:30:12.354 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:30:12.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:30:12.524 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:30:12.524 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:30:12.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:30:12.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:30:12.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:30:12.694 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:30:12.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:30:12.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:12.724 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:30:12.724 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:30:12.724 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:30:12.854 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:30:12.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:13.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:13.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:13.794 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:30:13.794 -07 000000610 INF: =================== Cycle #138, Pumping Reagent PR2 (3) ===================
17-03-18 05:30:13.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:13.954 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:30:13.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:30:14.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:30:14.114 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:30:14.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:30:14.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:30:14.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:30:14.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:14.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:14.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:14.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:30:14.734 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:30:14.734 -07 000000579 INF: WaitCommand(10000) start
17-03-18 05:30:14.734 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:30:14.734 -07 000000585 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:30:15.954 -07 000000585 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:30:15.954 -07 000000585 INF: LanePump: Xmit /1?\r
17-03-18 05:30:15.984 -07 000000585 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:30:15.984 -07 000000585 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:30:16.114 -07 000000585 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:30:16.154 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:16.774 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:17.424 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.02213,
17-03-18 05:30:17.684 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:17.714 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:30:18.134 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 05:30:18.164 -07 000000585 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:30:18.164 -07 000000585 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:30:18.164 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:30:18.164 -07 000000585 INF: ===================  ===================
17-03-18 05:30:21.774 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:22.794 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.038479,
17-03-18 05:30:24.744 -07 000000579 INF: WaitCommand(10000) end
17-03-18 05:30:24.744 -07 000000610 INF: =================== Cycle #138, Imaging ===================
17-03-18 05:30:24.744 -07 000000610 INF: Imaging Cycle 138: ScanTilesCommand Cycle 138 time start.
17-03-18 05:30:24.744 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:30:24.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:30:24.774 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:30:24.774 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:30:24.774 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:30:25.074 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:30:25.094 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:30:25.094 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:30:25.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:30:25.164 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:30:25.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:25.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:25.164 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:30:25.164 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:25.164 -07 000000467 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:30:25.164 -07 000000561 INF: FPGA: Recv EXLED1ON 
17-03-18 05:30:25.174 -07 000000467 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:30:25.174 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:30:26.124 -07 000000579 INF: FPGA: Recv EXLED1ADCR 23219
17-03-18 05:30:26.124 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 940 ms to get response, and 950 ms overall
17-03-18 05:30:26.124 -07 000000467 INF: RedLED: Using Red data: Photodiode ADC 23219 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.3 mW
17-03-18 05:30:26.124 -07 000000467 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:30:26.124 -07 000000585 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:30:26.134 -07 000000467 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:30:26.134 -07 000000467 INF: RedLED: LED was on for 960 ms
17-03-18 05:30:26.134 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 964 ms.
17-03-18 05:30:26.134 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:30:26.134 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:26.134 -07 000000467 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:30:26.134 -07 000000444 INF: FPGA: Recv EXLED2ON 
17-03-18 05:30:26.144 -07 000000467 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:30:26.144 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:30:26.144 -07 000000455 INF: FPGA: Recv EXLED1ADCR 2106
17-03-18 05:30:26.154 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:26.154 -07 000000467 INF: GreenLED: Using Green data: Photodiode ADC 2106 --> 0.9 mW (old method), or 182.9 mW (new method). Difference = 182.0 mW
17-03-18 05:30:26.154 -07 000000467 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:30:26.154 -07 000000444 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:30:26.164 -07 000000467 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:26.164 -07 000000467 INF: GreenLED: LED was on for 19 ms
17-03-18 05:30:26.164 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:30:26.164 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:30:26.164 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 05:30:26.174 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:30:26.174 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:30:26.674 -07 000000444 INF: FPGA: Recv EMOUT
17-03-18 05:30:26.674 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:30:26.674 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:30:26.674 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 05:30:26.684 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:26.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:26.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126747564152896. ------
17-03-18 05:30:26.684 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:26.684 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17850 mm
17-03-18 05:30:26.684 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:26.684 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:30:26.684 -07 000000585 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 05:30:26.684 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:26.694 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:30:26.694 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:26.694 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38994, sync = True, waitForSettling = False)
17-03-18 05:30:26.694 -07 000000579 INF: Z Motor: Moving to -0.178503 mm, started at -0.126748 mm, distance = -51.76 um
17-03-18 05:30:26.694 -07 000000561 INF: FPGA: Recv YRDPOS 154380
17-03-18 05:30:26.704 -07 000000579 INF: FPGA: Xmit ZDACW 38994\n [Z Motor]
17-03-18 05:30:26.704 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:26.704 -07 000000585 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:26.704 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:30:26.704 -07 000000585 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:30:26.704 -07 000000585 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:30:26.714 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:26.714 -07 000000579 INF: FPGA: 'ZDACW 38994' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:30:26.724 -07 000000585 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:30:26.734 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:26.734 -07 000000592 INF: FPGA: Recv ZDACR 38994
17-03-18 05:30:26.744 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:30:26.744 -07 000000579 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:30:26.774 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:26.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:26.914 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:26.914 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:30:28.164 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.018051,
17-03-18 05:30:28.404 -07 000000561 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 05:30:28.404 -07 000000585 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1703 ms overall
17-03-18 05:30:28.404 -07 000000585 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:30:28.404 -07 000000585 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24778 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:30:28.404 -07 000000585 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1704 ms, distance = 15.468 mm, average velocity = 9.077 mm/sec
17-03-18 05:30:31.254 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:31.254 -07 000000592 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:30:31.264 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:31.264 -07 000000585 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:31.294 -07 000000585 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:31.294 -07 000000585 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:30:31.294 -07 000000585 INF: Y Motor: Moved to 59.9097 after 4602 ms
17-03-18 05:30:31.294 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178503 mm (DAC = 38994)
17-03-18 05:30:31.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.294 -07 000000455 INF: FPGA: Recv ZSGSRD 37077
17-03-18 05:30:31.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:30:31.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.304 -07 000000585 INF: FPGA: Recv ZSGSRD 37073
17-03-18 05:30:31.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.314 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.314 -07 000000455 INF: FPGA: Recv ZSGSRD 37069
17-03-18 05:30:31.324 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.324 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.324 -07 000000444 INF: FPGA: Recv ZSGSRD 37070
17-03-18 05:30:31.334 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.334 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.334 -07 000000561 INF: FPGA: Recv ZSGSRD 37075
17-03-18 05:30:31.344 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.344 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.344 -07 000000444 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:30:31.354 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.354 -07 000000629 INF: FPGA: Recv ZSGSRD 37076
17-03-18 05:30:31.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.364 -07 000000467 INF: FPGA: Recv ZSGSRD 37078
17-03-18 05:30:31.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.374 -07 000000592 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:30:31.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:31.384 -07 000000585 INF: FPGA: Recv ZSGSRD 37071
17-03-18 05:30:31.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.394 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:31.394 -07 000000561 INF: FPGA: Recv ZPIEZORD 33335
17-03-18 05:30:31.404 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:31.404 -07 000000591 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.3 V.
17-03-18 05:30:31.404 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37075 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37076 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37069 (-177.6 uncal um), Max = 37079 (-177.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:30:31.404 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37075, posNoise = 4, negNoise = 6
17-03-18 05:30:31.404 -07 000000591 INF: Z Motor: After move to -0.178503, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:31.404 -07 000000591 INF: Z Motor: Settle wait time = 4601 ms, measure time = 106 ms (allowed 150 ms), total time = 4707 ms
17-03-18 05:30:31.404 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:31.454 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 05:30:31.454 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:31.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:31.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:31.454 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:31.454 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:31.454 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:31.454 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:31.454 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:31.454 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:30:31.484 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:30:31.484 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:31.484 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:30:31.484 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:31.494 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:30:31.494 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 05:30:31.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:31.544 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:30:31.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:31.844 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:30:31.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:30:31.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:31.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576740024, 0x0, 559484976) start.
17-03-18 05:30:31.884 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:30:31.884 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:31.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:30:31.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576740024, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:30:31.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:31.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:30:31.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:30:31.984 -07 000000606 INF: Image SNR check: start
17-03-18 05:30:31.984 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:31.984 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:31.994 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:31.994 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:31.994 -07 000000606 INF: Image SNR check: pass  [peak (Max-Min)=136.95]
17-03-18 05:30:31.994 -07 000000606 INF: Autofocus start
17-03-18 05:30:31.994 -07 000000606 INF: MeasureProfile start
17-03-18 05:30:32.004 -07 000000606 INF: MeasureProfile done
17-03-18 05:30:32.004 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:30:32.004 -07 000000606 INF: Autofocus finished
17-03-18 05:30:32.194 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:32.194 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:30:32.194 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178501017166922. ----------
17-03-18 05:30:32.194 -07 000000610 INF: Cycle	138	Tile	1	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:32.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37508, sync = True, waitForSettling = True)
17-03-18 05:30:32.204 -07 000000610 INF: Z Motor: Moving to -0.171701 mm, started at -0.178501 mm, distance = 6.80 um
17-03-18 05:30:32.204 -07 000000610 INF: FPGA: Xmit ZDACW 37508\n [Z Motor]
17-03-18 05:30:32.204 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:30:32.214 -07 000000610 INF: FPGA: 'ZDACW 37508' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:32.214 -07 000000629 INF: FPGA: Recv ZDACR 37508
17-03-18 05:30:32.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:32.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.374 -07 000000561 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:30:32.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:32.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.384 -07 000000455 INF: FPGA: Recv ZSGSRD 36022
17-03-18 05:30:32.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36019
17-03-18 05:30:32.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.404 -07 000000585 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:30:32.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.414 -07 000000591 INF: FPGA: Recv ZSGSRD 36017
17-03-18 05:30:32.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.424 -07 000000444 INF: FPGA: Recv ZSGSRD 36019
17-03-18 05:30:32.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.434 -07 000000591 INF: FPGA: Recv ZSGSRD 36022
17-03-18 05:30:32.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.444 -07 000000591 INF: FPGA: Recv ZSGSRD 36016
17-03-18 05:30:32.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.454 -07 000000467 INF: FPGA: Recv ZSGSRD 36015
17-03-18 05:30:32.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:32.464 -07 000000455 INF: FPGA: Recv ZSGSRD 36020
17-03-18 05:30:32.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:32.474 -07 000000467 INF: FPGA: Recv ZPIEZORD 31911
17-03-18 05:30:32.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:32.484 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.1 V.
17-03-18 05:30:32.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36018 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36015 (-170.8 uncal um), Max = 36022 (-170.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:30:32.484 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36018, posNoise = 4, negNoise = 3
17-03-18 05:30:32.484 -07 000000610 INF: Z Motor: After move to -0.171701, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:32.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:30:32.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:32.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:32.484 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:32.484 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:32.484 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:32.484 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:32.484 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:32.484 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:32.484 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:32.484 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:32.484 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:30:32.484 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:30:32.484 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:30:32.484 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:32.504 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:30:32.504 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:30:32.514 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-18 05:30:32.514 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:32.514 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:30:32.514 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:32.524 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:30:32.524 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-18 05:30:32.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37685 150\n [Camera]
17-03-18 05:30:32.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:33.164 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:33.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:33.164 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:33.174 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:33.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:33.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:33.174 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:33.174 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:30:33.184 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:33.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 05:30:33.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37685 825
17-03-18 05:30:33.514 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:30:33.534 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.996267,
17-03-18 05:30:33.574 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:30:33.574 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:30:33.574 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:33.574 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:33.574 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:30:33.574 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:30:33.574 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:30:33.574 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:33.584 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:33.594 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 05:30:33.724 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:33.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:33.724 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:33.844 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:33.844 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:30:33.844 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:33.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:33.844 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:33.844 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:33.844 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:30:33.914 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:30:33.914 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:33.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37685 150' command took 2 ms to send, 1375 ms to get response, and 1387 ms overall
17-03-18 05:30:33.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:33.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171710624933081. ------
17-03-18 05:30:33.924 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:33.924 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17793 mm
17-03-18 05:30:33.924 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:33.924 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:30:33.924 -07 000000455 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 05:30:33.924 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38869, sync = True, waitForSettling = False)
17-03-18 05:30:33.924 -07 000000585 INF: Z Motor: Moving to -0.177931 mm, started at -0.171711 mm, distance = -6.22 um
17-03-18 05:30:33.924 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:33.934 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:33.934 -07 000000585 INF: FPGA: Xmit ZDACW 38869\n [Z Motor]
17-03-18 05:30:33.934 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:30:33.944 -07 000000585 INF: FPGA: 'ZDACW 38869' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:30:33.944 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:33.944 -07 000000467 INF: FPGA: Recv YRDPOS 122695
17-03-18 05:30:33.954 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:30:33.954 -07 000000455 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:33.954 -07 000000455 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:33.954 -07 000000455 INF: Y Motor: Moving 1333 steps0
17-03-18 05:30:33.954 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:33.964 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:33.964 -07 000000424 INF: FPGA: Recv ZDACR 38869
17-03-18 05:30:33.974 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:30:33.974 -07 000000585 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:30:33.974 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:34.154 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:34.154 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 05:30:34.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:30:34.234 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:30:34.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:34.234 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:30:34.234 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:30:34.234 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:34.244 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:30:34.244 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:30:34.244 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 05:30:34.254 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:30:34.344 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 05:30:34.344 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:30:34.384 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:34.394 -07 000000579 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:30:34.394 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:30:34.394 -07 000000455 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:34.394 -07 000000455 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:30:34.394 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.833 mm, average velocity = 2.109 mm/sec
17-03-18 05:30:35.344 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:35.344 -07 000000591 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:30:35.354 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:35.354 -07 000000455 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:35.384 -07 000000455 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:35.384 -07 000000455 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:30:35.384 -07 000000455 INF: Y Motor: Moved to 60.7319 after 1460 ms (table move)
17-03-18 05:30:35.384 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177931 mm (DAC = 38869)
17-03-18 05:30:35.384 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.394 -07 000000606 INF: FPGA: Recv ZSGSRD 36983
17-03-18 05:30:35.394 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:30:35.394 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.394 -07 000000629 INF: FPGA: Recv ZSGSRD 36987
17-03-18 05:30:35.404 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.404 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.404 -07 000000585 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:30:35.414 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.414 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.414 -07 000000629 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:30:35.424 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.424 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.424 -07 000000467 INF: FPGA: Recv ZSGSRD 36985
17-03-18 05:30:35.434 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.434 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.434 -07 000000455 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:30:35.444 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.444 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.444 -07 000000629 INF: FPGA: Recv ZSGSRD 36983
17-03-18 05:30:35.454 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.454 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.454 -07 000000455 INF: FPGA: Recv ZSGSRD 36995
17-03-18 05:30:35.464 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.464 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:30:35.474 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.474 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:35.474 -07 000000591 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:30:35.484 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.484 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:35.484 -07 000000585 INF: FPGA: Recv ZPIEZORD 33236
17-03-18 05:30:35.494 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:35.494 -07 000000444 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.3 V.
17-03-18 05:30:35.494 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36987 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36986 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36983 (-177.0 uncal um), Max = 36995 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:30:35.494 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36987, posNoise = 8, negNoise = 4
17-03-18 05:30:35.494 -07 000000444 INF: Z Motor: After move to -0.177931, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:35.494 -07 000000444 INF: Z Motor: Settle wait time = 1463 ms, measure time = 103 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:30:35.494 -07 000000444 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:35.544 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:30:35.544 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:35.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:35.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:35.544 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:35.544 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:35.544 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:35.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:35.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:35.544 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:35.554 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:35.554 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:35.564 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:30:35.564 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:30:35.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:35.614 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:30:35.914 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:30:35.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:30:35.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:35.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576740024, 0x0, 559484976) start.
17-03-18 05:30:35.944 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:30:35.954 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:35.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:30:36.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576740024, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:30:36.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:36.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:30:36.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:30:36.054 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:36.054 -07 000000591 INF: Autofocus start
17-03-18 05:30:36.054 -07 000000591 INF: MeasureProfile start
17-03-18 05:30:36.054 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:36.064 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:36.064 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:36.064 -07 000000591 INF: MeasureProfile done
17-03-18 05:30:36.064 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:30:36.064 -07 000000591 INF: Autofocus finished
17-03-18 05:30:36.264 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:36.264 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:30:36.264 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177935686498447. ----------
17-03-18 05:30:36.264 -07 000000610 INF: Cycle	138	Tile	2	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:36.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37384, sync = True, waitForSettling = True)
17-03-18 05:30:36.274 -07 000000610 INF: Z Motor: Moving to -0.171133 mm, started at -0.177936 mm, distance = 6.80 um
17-03-18 05:30:36.274 -07 000000610 INF: FPGA: Xmit ZDACW 37384\n [Z Motor]
17-03-18 05:30:36.274 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:30:36.284 -07 000000610 INF: FPGA: 'ZDACW 37384' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:36.284 -07 000000629 INF: FPGA: Recv ZDACR 37384
17-03-18 05:30:36.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:36.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.444 -07 000000467 INF: FPGA: Recv ZSGSRD 35925
17-03-18 05:30:36.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:36.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.454 -07 000000444 INF: FPGA: Recv ZSGSRD 35929
17-03-18 05:30:36.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35929
17-03-18 05:30:36.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.474 -07 000000606 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:30:36.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35935
17-03-18 05:30:36.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35929
17-03-18 05:30:36.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35932
17-03-18 05:30:36.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.514 -07 000000444 INF: FPGA: Recv ZSGSRD 35931
17-03-18 05:30:36.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.524 -07 000000629 INF: FPGA: Recv ZSGSRD 35923
17-03-18 05:30:36.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:36.534 -07 000000585 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:30:36.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:36.544 -07 000000579 INF: FPGA: Recv ZPIEZORD 31805
17-03-18 05:30:36.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:36.554 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.1 V.
17-03-18 05:30:36.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35929 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35929 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35923 (-170.2 uncal um), Max = 35935 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:30:36.554 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35929, posNoise = 6, negNoise = 6
17-03-18 05:30:36.554 -07 000000610 INF: Z Motor: After move to -0.171133, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:36.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:30:36.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:36.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:36.554 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:36.554 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:36.554 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:36.554 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:36.554 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:36.554 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:36.554 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:30:36.554 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:36.554 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:30:36.554 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:36.564 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:30:36.564 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:36.564 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:30:36.564 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:36.574 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:30:36.574 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:30:36.574 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:30:36.574 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:30:36.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37561 150\n [Camera]
17-03-18 05:30:36.774 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:36.784 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:37.224 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:37.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:37.224 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:37.224 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:37.224 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-18 05:30:37.224 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:37.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:37.224 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:37.224 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:37.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-18 05:30:37.414 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37561 825
17-03-18 05:30:37.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:30:37.624 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:30:37.624 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:30:37.624 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:37.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:37.624 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:30:37.624 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:30:37.624 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:30:37.624 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:37.634 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:37.634 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:30:37.774 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:37.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:37.774 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:37.774 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:37.774 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:30:37.774 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:37.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:37.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:37.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:37.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:30:37.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:30:37.964 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:37.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37561 150' command took 2 ms to send, 1377 ms to get response, and 1387 ms overall
17-03-18 05:30:37.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:37.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171138870052464. ------
17-03-18 05:30:38.094 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:38.094 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17794 mm
17-03-18 05:30:38.094 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:38.094 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:30:38.094 -07 000000467 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:30:38.094 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:38.094 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38870, sync = True, waitForSettling = False)
17-03-18 05:30:38.094 -07 000000585 INF: Z Motor: Moving to -0.177935 mm, started at -0.171139 mm, distance = -6.80 um
17-03-18 05:30:38.104 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:30:38.104 -07 000000585 INF: FPGA: Xmit ZDACW 38870\n [Z Motor]
17-03-18 05:30:38.104 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:30:38.114 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:38.114 -07 000000585 INF: FPGA: 'ZDACW 38870' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:30:38.114 -07 000000437 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:30:38.124 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:38.124 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:30:38.124 -07 000000467 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:38.124 -07 000000467 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:38.124 -07 000000467 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:30:38.134 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:38.134 -07 000000591 INF: FPGA: Recv ZDACR 38870
17-03-18 05:30:38.144 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:30:38.144 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:38.144 -07 000000585 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:30:38.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:30:38.174 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:30:38.174 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:38.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:30:38.174 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:30:38.174 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:38.184 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:38.184 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:30:38.184 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:30:38.194 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:30:38.324 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:38.324 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:30:38.514 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 05:30:38.514 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:30:38.564 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:38.574 -07 000000591 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:30:38.574 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:30:38.574 -07 000000467 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:38.574 -07 000000467 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:30:38.574 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-18 05:30:38.904 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.99219,
17-03-18 05:30:39.524 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:39.524 -07 000000629 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:30:39.534 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:39.534 -07 000000467 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:39.564 -07 000000467 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:39.564 -07 000000467 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:30:39.564 -07 000000467 INF: Y Motor: Moved to 61.5625 after 1466 ms (table move)
17-03-18 05:30:39.564 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177935 mm (DAC = 38870)
17-03-18 05:30:39.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.564 -07 000000629 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:30:39.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:30:39.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.574 -07 000000629 INF: FPGA: Recv ZSGSRD 36988
17-03-18 05:30:39.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.584 -07 000000629 INF: FPGA: Recv ZSGSRD 36990
17-03-18 05:30:39.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.594 -07 000000591 INF: FPGA: Recv ZSGSRD 36987
17-03-18 05:30:39.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:30:39.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.604 -07 000000579 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:30:39.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.614 -07 000000629 INF: FPGA: Recv ZSGSRD 36984
17-03-18 05:30:39.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.624 -07 000000629 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:30:39.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.634 -07 000000561 INF: FPGA: Recv ZSGSRD 36987
17-03-18 05:30:39.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.644 -07 000000629 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:30:39.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:39.654 -07 000000561 INF: FPGA: Recv ZSGSRD 36986
17-03-18 05:30:39.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.664 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:39.664 -07 000000629 INF: FPGA: Recv ZPIEZORD 33240
17-03-18 05:30:39.674 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:39.674 -07 000000606 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.3 V.
17-03-18 05:30:39.674 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36987 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36987 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36984 (-177.0 uncal um), Max = 36991 (-177.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:30:39.674 -07 000000606 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36987, posNoise = 4, negNoise = 3
17-03-18 05:30:39.674 -07 000000606 INF: Z Motor: After move to -0.177935, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:39.674 -07 000000606 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms
17-03-18 05:30:39.674 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:39.724 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:30:39.724 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:39.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:39.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:39.724 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:39.724 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:39.724 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:39.724 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:39.724 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:39.724 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:39.734 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:39.734 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:39.734 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:30:39.734 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:30:39.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:39.784 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:30:40.084 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:30:40.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:30:40.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:40.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:30:40.124 -07 000000444 INF: FPGA: Recv @CAMSNAP 382
17-03-18 05:30:40.124 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:40.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 05:30:40.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:30:40.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:40.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:30:40.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:30:40.224 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:40.224 -07 000000579 INF: Autofocus start
17-03-18 05:30:40.224 -07 000000579 INF: MeasureProfile start
17-03-18 05:30:40.224 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:40.234 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:40.234 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:40.234 -07 000000579 INF: MeasureProfile done
17-03-18 05:30:40.234 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:30:40.234 -07 000000579 INF: Autofocus finished
17-03-18 05:30:40.434 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:40.434 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:30:40.434 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177935686498447. ----------
17-03-18 05:30:40.434 -07 000000610 INF: Cycle	138	Tile	3	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:40.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37385, sync = True, waitForSettling = True)
17-03-18 05:30:40.444 -07 000000610 INF: Z Motor: Moving to -0.171138 mm, started at -0.177936 mm, distance = 6.80 um
17-03-18 05:30:40.444 -07 000000610 INF: FPGA: Xmit ZDACW 37385\n [Z Motor]
17-03-18 05:30:40.444 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:30:40.454 -07 000000610 INF: FPGA: 'ZDACW 37385' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:40.454 -07 000000579 INF: FPGA: Recv ZDACR 37385
17-03-18 05:30:40.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:40.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.614 -07 000000579 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:30:40.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:30:40.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.634 -07 000000606 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:30:40.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.644 -07 000000591 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:30:40.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.654 -07 000000561 INF: FPGA: Recv ZSGSRD 35929
17-03-18 05:30:40.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.664 -07 000000606 INF: FPGA: Recv ZSGSRD 35932
17-03-18 05:30:40.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.674 -07 000000591 INF: FPGA: Recv ZSGSRD 35931
17-03-18 05:30:40.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.684 -07 000000561 INF: FPGA: Recv ZSGSRD 35927
17-03-18 05:30:40.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.694 -07 000000629 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:30:40.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:40.704 -07 000000561 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:30:40.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:40.714 -07 000000606 INF: FPGA: Recv ZPIEZORD 31823
17-03-18 05:30:40.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:40.724 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 05:30:40.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35929 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35926 (-170.2 uncal um), Max = 35932 (-170.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:30:40.724 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35929, posNoise = 3, negNoise = 3
17-03-18 05:30:40.724 -07 000000610 INF: Z Motor: After move to -0.171138, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:40.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:30:40.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:40.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:40.724 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:40.724 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:40.724 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:40.724 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:40.724 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:40.724 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:40.724 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:30:40.724 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:40.724 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:30:40.724 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:40.734 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:30:40.734 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:40.734 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:40.734 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:40.744 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:30:40.744 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:30:40.744 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:30:40.744 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:30:40.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37562 150\n [Camera]
17-03-18 05:30:40.944 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:41.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:41.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:41.384 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:41.384 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:41.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:41.384 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:41.384 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:41.384 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:30:41.394 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:41.394 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:30:41.574 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37562 825
17-03-18 05:30:41.734 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:30:41.774 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:41.784 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:30:41.784 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:30:41.784 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:41.784 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:30:41.784 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:30:41.784 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:41.784 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:30:41.784 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:30:41.784 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:30:41.794 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:30:41.944 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:41.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:41.944 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:41.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:41.944 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:41.944 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 05:30:41.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:41.944 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:41.944 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:41.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:30:42.134 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:30:42.134 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:42.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37562 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-18 05:30:42.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:42.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171138870052464. ------
17-03-18 05:30:42.134 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:42.134 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17733 mm
17-03-18 05:30:42.134 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:42.134 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:30:42.134 -07 000000444 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:30:42.134 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38737, sync = True, waitForSettling = False)
17-03-18 05:30:42.134 -07 000000561 INF: Z Motor: Moving to -0.177327 mm, started at -0.171139 mm, distance = -6.19 um
17-03-18 05:30:42.144 -07 000000561 INF: FPGA: Xmit ZDACW 38737\n [Z Motor]
17-03-18 05:30:42.144 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:42.144 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:30:42.144 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:30:42.154 -07 000000561 INF: FPGA: 'ZDACW 38737' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:30:42.154 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:42.154 -07 000000629 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:30:42.164 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:42.164 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:30:42.164 -07 000000444 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:42.164 -07 000000444 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:42.164 -07 000000444 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:30:42.174 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:42.174 -07 000000629 INF: FPGA: Recv ZDACR 38737
17-03-18 05:30:42.184 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:30:42.184 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:42.184 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:30:42.344 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:30:42.344 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:30:42.344 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:42.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:30:42.354 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:30:42.354 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:42.354 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:42.354 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:30:42.354 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:30:42.364 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:30:42.364 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:42.364 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:30:42.554 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:30:42.554 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 05:30:42.604 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:42.614 -07 000000629 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:30:42.614 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:30:42.614 -07 000000444 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:42.614 -07 000000444 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:30:42.614 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 05:30:43.564 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:43.564 -07 000000591 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:30:43.574 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.574 -07 000000444 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:43.604 -07 000000444 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:43.604 -07 000000444 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:30:43.604 -07 000000444 INF: Y Motor: Moved to 62.3940 after 1463 ms (table move)
17-03-18 05:30:43.604 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177327 mm (DAC = 38737)
17-03-18 05:30:43.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.604 -07 000000591 INF: FPGA: Recv ZSGSRD 36896
17-03-18 05:30:43.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:30:43.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.614 -07 000000444 INF: FPGA: Recv ZSGSRD 36899
17-03-18 05:30:43.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.624 -07 000000592 INF: FPGA: Recv ZSGSRD 36893
17-03-18 05:30:43.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.644 -07 000000591 INF: FPGA: Recv ZSGSRD 36894
17-03-18 05:30:43.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:30:43.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.654 -07 000000444 INF: FPGA: Recv ZSGSRD 36899
17-03-18 05:30:43.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.664 -07 000000629 INF: FPGA: Recv ZSGSRD 36900
17-03-18 05:30:43.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.674 -07 000000591 INF: FPGA: Recv ZSGSRD 36894
17-03-18 05:30:43.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.684 -07 000000424 INF: FPGA: Recv ZSGSRD 36893
17-03-18 05:30:43.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.694 -07 000000591 INF: FPGA: Recv ZSGSRD 36898
17-03-18 05:30:43.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:43.704 -07 000000424 INF: FPGA: Recv ZSGSRD 36895
17-03-18 05:30:43.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.714 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:43.714 -07 000000467 INF: FPGA: Recv ZPIEZORD 33113
17-03-18 05:30:43.724 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:43.724 -07 000000606 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.4 V.
17-03-18 05:30:43.724 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36896 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36896 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36893 (-176.4 uncal um), Max = 36900 (-176.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:30:43.724 -07 000000606 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36896, posNoise = 4, negNoise = 3
17-03-18 05:30:43.724 -07 000000606 INF: Z Motor: After move to -0.177327, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:43.724 -07 000000606 INF: Z Motor: Settle wait time = 1468 ms, measure time = 114 ms (allowed 150 ms), total time = 1582 ms
17-03-18 05:30:43.724 -07 000000606 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:43.764 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:30:43.764 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:43.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:43.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:43.764 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:43.764 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:43.764 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:43.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:43.764 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:30:43.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:43.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:43.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:43.774 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:30:43.774 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:30:43.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:43.834 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:30:44.124 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:30:44.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:30:44.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:44.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:30:44.164 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:30:44.164 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:44.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:30:44.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:30:44.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:44.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:30:44.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:30:44.264 -07 000000467 INF: Autofocus start
17-03-18 05:30:44.264 -07 000000467 INF: MeasureProfile start
17-03-18 05:30:44.274 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:44.274 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.001704,
17-03-18 05:30:44.274 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:44.274 -07 000000467 INF: MeasureProfile done
17-03-18 05:30:44.274 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:30:44.274 -07 000000467 INF: Autofocus finished
17-03-18 05:30:44.284 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:30:44.304 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:44.504 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:44.504 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:30:44.504 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.177351083193547. ----------
17-03-18 05:30:44.514 -07 000000610 INF: Cycle	138	Tile	4	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:44.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37252, sync = True, waitForSettling = True)
17-03-18 05:30:44.514 -07 000000610 INF: Z Motor: Moving to -0.170529 mm, started at -0.177351 mm, distance = 6.82 um
17-03-18 05:30:44.514 -07 000000610 INF: FPGA: Xmit ZDACW 37252\n [Z Motor]
17-03-18 05:30:44.514 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:30:44.524 -07 000000610 INF: FPGA: 'ZDACW 37252' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:44.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:44.524 -07 000000467 INF: FPGA: Recv ZDACR 37252
17-03-18 05:30:44.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.684 -07 000000467 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:30:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35836
17-03-18 05:30:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.704 -07 000000467 INF: FPGA: Recv ZSGSRD 35828
17-03-18 05:30:44.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.714 -07 000000561 INF: FPGA: Recv ZSGSRD 35838
17-03-18 05:30:44.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.724 -07 000000467 INF: FPGA: Recv ZSGSRD 35834
17-03-18 05:30:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.734 -07 000000561 INF: FPGA: Recv ZSGSRD 35839
17-03-18 05:30:44.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35832
17-03-18 05:30:44.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35836
17-03-18 05:30:44.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.764 -07 000000444 INF: FPGA: Recv ZSGSRD 35840
17-03-18 05:30:44.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:44.774 -07 000000444 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:30:44.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:44.784 -07 000000437 INF: FPGA: Recv ZPIEZORD 31649
17-03-18 05:30:44.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:44.794 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-18 05:30:44.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35835 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35835 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:30:44.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35835, posNoise = 5, negNoise = 7
17-03-18 05:30:44.794 -07 000000610 INF: Z Motor: After move to -0.170529, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:44.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:30:44.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:44.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:44.794 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:44.794 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:44.794 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:44.794 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:44.794 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:44.794 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:44.794 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:44.794 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:44.794 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:30:44.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:44.804 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:30:44.804 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:44.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:30:44.804 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:44.814 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:30:44.814 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:30:44.814 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:30:44.814 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:30:44.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37429 150\n [Camera]
17-03-18 05:30:45.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:45.454 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:45.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:45.454 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:45.454 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:45.454 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) start.
17-03-18 05:30:45.454 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:45.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:45.454 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:45.454 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:45.454 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:30:45.644 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37429 825
17-03-18 05:30:45.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:30:45.854 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:30:45.854 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:30:45.854 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:45.854 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:30:45.854 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:30:45.854 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:45.854 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:45.854 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:30:45.854 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:45.864 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:30:46.004 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:46.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:46.014 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:46.014 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:46.014 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:30:46.014 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:46.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:46.014 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:46.014 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:46.014 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:30:46.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:30:46.204 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:46.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37429 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-18 05:30:46.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:46.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.170534994111139. ------
17-03-18 05:30:46.324 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:46.334 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17695 mm
17-03-18 05:30:46.334 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:46.334 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:46.334 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38654, sync = True, waitForSettling = False)
17-03-18 05:30:46.334 -07 000000585 INF: Z Motor: Moving to -0.176947 mm, started at -0.170535 mm, distance = -6.41 um
17-03-18 05:30:46.334 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:30:46.334 -07 000000437 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 05:30:46.344 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:46.344 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:46.344 -07 000000629 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:30:46.354 -07 000000585 INF: FPGA: Xmit ZDACW 38654\n [Z Motor]
17-03-18 05:30:46.354 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:30:46.354 -07 000000437 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:46.354 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:30:46.354 -07 000000437 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:46.354 -07 000000437 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:30:46.364 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:46.364 -07 000000585 INF: FPGA: 'ZDACW 38654' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:30:46.374 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:46.384 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:46.384 -07 000000629 INF: FPGA: Recv ZDACR 38654
17-03-18 05:30:46.394 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:30:46.394 -07 000000585 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:30:46.414 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:30:46.414 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:30:46.414 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:46.414 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:46.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:30:46.414 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:30:46.414 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:46.424 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:30:46.424 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:30:46.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:30:46.564 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:46.564 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:30:46.744 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:30:46.744 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 393 ms overall
17-03-18 05:30:46.774 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:46.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:46.794 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:46.804 -07 000000444 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:30:46.804 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:30:46.804 -07 000000437 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:46.804 -07 000000437 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:30:46.804 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-18 05:30:47.754 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:47.754 -07 000000606 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:30:47.764 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.764 -07 000000437 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:47.794 -07 000000437 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:47.794 -07 000000437 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:30:47.794 -07 000000437 INF: Y Motor: Moved to 63.2227 after 1457 ms (table move)
17-03-18 05:30:47.794 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176947 mm (DAC = 38654)
17-03-18 05:30:47.794 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.794 -07 000000606 INF: FPGA: Recv ZSGSRD 36837
17-03-18 05:30:47.804 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:30:47.804 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.804 -07 000000437 INF: FPGA: Recv ZSGSRD 36836
17-03-18 05:30:47.814 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.814 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.814 -07 000000585 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:30:47.824 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.824 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.824 -07 000000561 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:30:47.834 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.834 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.834 -07 000000585 INF: FPGA: Recv ZSGSRD 36834
17-03-18 05:30:47.844 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.844 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.844 -07 000000606 INF: FPGA: Recv ZSGSRD 36837
17-03-18 05:30:47.854 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.854 -07 000000585 INF: FPGA: Recv ZSGSRD 36829
17-03-18 05:30:47.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.864 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.864 -07 000000606 INF: FPGA: Recv ZSGSRD 36831
17-03-18 05:30:47.874 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.874 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.874 -07 000000585 INF: FPGA: Recv ZSGSRD 36828
17-03-18 05:30:47.884 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.884 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:47.884 -07 000000606 INF: FPGA: Recv ZSGSRD 36838
17-03-18 05:30:47.894 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.894 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:47.894 -07 000000585 INF: FPGA: Recv ZPIEZORD 33020
17-03-18 05:30:47.904 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:47.904 -07 000000591 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.4 V.
17-03-18 05:30:47.904 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36835 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36828 (-176.0 uncal um), Max = 36838 (-176.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:30:47.904 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36835, posNoise = 3, negNoise = 7
17-03-18 05:30:47.904 -07 000000591 INF: Z Motor: After move to -0.176947, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:47.904 -07 000000591 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:30:47.904 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:47.954 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 05:30:47.954 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:47.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:47.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:47.954 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:47.954 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:47.954 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:47.954 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:47.954 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:47.954 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:47.964 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:47.964 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:47.964 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:30:47.964 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:30:47.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:48.014 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:30:48.314 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:30:48.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:30:48.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:48.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:30:48.354 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:30:48.354 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:48.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:30:48.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:30:48.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:48.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:30:48.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:30:48.454 -07 000000424 INF: Autofocus start
17-03-18 05:30:48.454 -07 000000424 INF: MeasureProfile start
17-03-18 05:30:48.454 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:48.454 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:48.464 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:48.464 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:48.464 -07 000000424 INF: MeasureProfile done
17-03-18 05:30:48.464 -07 000000424 INF: X=64  Z correction [um]=0.2557664
17-03-18 05:30:48.464 -07 000000424 INF: Autofocus finished
17-03-18 05:30:48.664 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:48.664 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:30:48.664 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.1769592062529. ----------
17-03-18 05:30:48.674 -07 000000610 INF: Cycle	138	Tile	5	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:48.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37223, sync = True, waitForSettling = True)
17-03-18 05:30:48.674 -07 000000610 INF: Z Motor: Moving to -0.170396 mm, started at -0.176959 mm, distance = 6.56 um
17-03-18 05:30:48.674 -07 000000610 INF: FPGA: Xmit ZDACW 37223\n [Z Motor]
17-03-18 05:30:48.674 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:30:48.684 -07 000000610 INF: FPGA: 'ZDACW 37223' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:30:48.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:48.684 -07 000000424 INF: FPGA: Recv ZDACR 37223
17-03-18 05:30:48.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:48.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.844 -07 000000437 INF: FPGA: Recv ZSGSRD 35823
17-03-18 05:30:48.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.854 -07 000000606 INF: FPGA: Recv ZSGSRD 35821
17-03-18 05:30:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.864 -07 000000585 INF: FPGA: Recv ZSGSRD 35815
17-03-18 05:30:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:30:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.874 -07 000000561 INF: FPGA: Recv ZSGSRD 35816
17-03-18 05:30:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.884 -07 000000629 INF: FPGA: Recv ZSGSRD 35814
17-03-18 05:30:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.894 -07 000000424 INF: FPGA: Recv ZSGSRD 35812
17-03-18 05:30:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.904 -07 000000606 INF: FPGA: Recv ZSGSRD 35818
17-03-18 05:30:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.914 -07 000000444 INF: FPGA: Recv ZSGSRD 35816
17-03-18 05:30:48.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35822
17-03-18 05:30:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:48.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35812
17-03-18 05:30:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:48.944 -07 000000629 INF: FPGA: Recv ZPIEZORD 31657
17-03-18 05:30:48.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:48.954 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 05:30:48.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35817 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35812 (-169.5 uncal um), Max = 35823 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:30:48.954 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35817, posNoise = 6, negNoise = 5
17-03-18 05:30:48.954 -07 000000610 INF: Z Motor: After move to -0.170396, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:48.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:30:48.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:48.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:48.954 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:48.954 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:48.954 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:48.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:48.954 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:48.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:48.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:48.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:48.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:30:48.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:48.964 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:48.964 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:48.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:30:48.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:48.974 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:30:48.974 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:30:48.974 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:30:48.974 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:30:48.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37399 150\n [Camera]
17-03-18 05:30:49.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:49.614 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:49.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:49.614 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:49.614 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:49.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:49.614 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:49.614 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:49.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:30:49.624 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:49.624 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:30:49.654 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.012614,
17-03-18 05:30:49.804 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37399 825
17-03-18 05:30:49.954 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:30:50.014 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:30:50.014 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:30:50.014 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:50.014 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:50.014 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:30:50.024 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:30:50.024 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:30:50.024 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:50.024 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:50.034 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:30:50.174 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:50.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:50.174 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:50.174 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:50.174 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:30:50.174 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:50.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:50.174 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:50.174 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:50.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:30:50.364 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:30:50.364 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:50.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37399 150' command took 2 ms to send, 1382 ms to get response, and 1387 ms overall
17-03-18 05:30:50.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:50.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170419358292587. ------
17-03-18 05:30:50.364 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:50.364 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17676 mm
17-03-18 05:30:50.364 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:50.374 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:50.374 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:30:50.374 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:50.374 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:30:50.374 -07 000000455 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 05:30:50.374 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38614, sync = True, waitForSettling = False)
17-03-18 05:30:50.374 -07 000000561 INF: Z Motor: Moving to -0.176764 mm, started at -0.170419 mm, distance = -6.34 um
17-03-18 05:30:50.384 -07 000000561 INF: FPGA: Xmit ZDACW 38614\n [Z Motor]
17-03-18 05:30:50.384 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:30:50.394 -07 000000561 INF: FPGA: 'ZDACW 38614' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:30:50.394 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:50.394 -07 000000437 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:30:50.404 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:50.404 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:30:50.404 -07 000000455 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:50.524 -07 000000455 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:50.524 -07 000000455 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:30:50.524 -07 000000437 INF: FPGA: Recv ZDACR 38614
17-03-18 05:30:50.524 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 131 ms overall
17-03-18 05:30:50.524 -07 000000561 INF: Z Motor: MoveAbsStepped took 148 ms (did NOT wait for settling yet))
17-03-18 05:30:50.524 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:50.574 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:30:50.574 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:30:50.574 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:50.574 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:50.574 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:30:50.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:30:50.574 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:30:50.574 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:50.584 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:30:50.584 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:30:50.584 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:30:50.584 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:30:50.894 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 05:30:50.904 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 379 ms overall
17-03-18 05:30:50.954 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:50.954 -07 000000592 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:30:50.964 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:50.964 -07 000000455 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:50.964 -07 000000455 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:30:50.964 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.216 mm/sec
17-03-18 05:30:51.774 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:51.914 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:51.914 -07 000000585 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:30:51.924 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:51.924 -07 000000455 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:51.954 -07 000000455 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:51.954 -07 000000455 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:30:51.954 -07 000000455 INF: Y Motor: Moved to 64.0557 after 1577 ms (table move)
17-03-18 05:30:51.954 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176764 mm (DAC = 38614)
17-03-18 05:30:51.954 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:51.954 -07 000000592 INF: FPGA: Recv ZSGSRD 36804
17-03-18 05:30:51.964 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:51.964 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:51.964 -07 000000382 INF: FPGA: Recv ZSGSRD 36801
17-03-18 05:30:51.974 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:51.974 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:51.974 -07 000000606 INF: FPGA: Recv ZSGSRD 36805
17-03-18 05:30:51.984 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:51.984 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:51.984 -07 000000455 INF: FPGA: Recv ZSGSRD 36811
17-03-18 05:30:51.994 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:51.994 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:51.994 -07 000000444 INF: FPGA: Recv ZSGSRD 36808
17-03-18 05:30:52.004 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.004 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:52.004 -07 000000424 INF: FPGA: Recv ZSGSRD 36810
17-03-18 05:30:52.014 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.014 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:52.014 -07 000000569 INF: FPGA: Recv ZSGSRD 36809
17-03-18 05:30:52.024 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:52.024 -07 000000581 INF: FPGA: Recv ZSGSRD 36802
17-03-18 05:30:52.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:52.034 -07 000000455 INF: FPGA: Recv ZSGSRD 36797
17-03-18 05:30:52.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:52.044 -07 000000502 INF: FPGA: Recv ZSGSRD 36800
17-03-18 05:30:52.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.054 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:52.054 -07 000000424 INF: FPGA: Recv ZPIEZORD 32989
17-03-18 05:30:52.064 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.064 -07 000000591 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.4 V.
17-03-18 05:30:52.064 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36805 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36804 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36797 (-175.8 uncal um), Max = 36811 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:30:52.064 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36805, posNoise = 6, negNoise = 8
17-03-18 05:30:52.064 -07 000000591 INF: Z Motor: After move to -0.176764, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:52.064 -07 000000591 INF: Z Motor: Settle wait time = 1580 ms, measure time = 107 ms (allowed 150 ms), total time = 1687 ms
17-03-18 05:30:52.064 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:52.114 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1740 ms
17-03-18 05:30:52.114 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:52.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:52.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:52.114 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:52.114 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:52.114 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:52.114 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:52.124 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:52.124 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:52.124 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:52.124 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:52.124 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:30:52.124 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:30:52.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:52.174 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:30:52.474 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:30:52.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:30:52.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:52.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:30:52.514 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:30:52.514 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:52.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:30:52.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:30:52.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:52.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:30:52.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:30:52.614 -07 000000382 INF: Autofocus start
17-03-18 05:30:52.614 -07 000000382 INF: MeasureProfile start
17-03-18 05:30:52.614 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:52.614 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:52.624 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:30:52.624 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:52.624 -07 000000382 INF: MeasureProfile done
17-03-18 05:30:52.624 -07 000000382 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 05:30:52.624 -07 000000382 INF: Autofocus finished
17-03-18 05:30:52.824 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:52.824 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:30:52.824 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176766479888647. ----------
17-03-18 05:30:52.824 -07 000000610 INF: Cycle	138	Tile	6	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:52.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37038, sync = True, waitForSettling = True)
17-03-18 05:30:52.834 -07 000000610 INF: Z Motor: Moving to -0.169549 mm, started at -0.176766 mm, distance = 7.22 um
17-03-18 05:30:52.834 -07 000000610 INF: FPGA: Xmit ZDACW 37038\n [Z Motor]
17-03-18 05:30:52.834 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:30:52.844 -07 000000610 INF: FPGA: 'ZDACW 37038' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:30:52.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:52.844 -07 000000629 INF: FPGA: Recv ZDACR 37038
17-03-18 05:30:52.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:52.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.004 -07 000000502 INF: FPGA: Recv ZSGSRD 35682
17-03-18 05:30:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.014 -07 000000606 INF: FPGA: Recv ZSGSRD 35685
17-03-18 05:30:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.024 -07 000000579 INF: FPGA: Recv ZSGSRD 35686
17-03-18 05:30:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.034 -07 000000382 INF: FPGA: Recv ZSGSRD 35687
17-03-18 05:30:53.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.044 -07 000000569 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:30:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.054 -07 000000629 INF: FPGA: Recv ZSGSRD 35677
17-03-18 05:30:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.064 -07 000000585 INF: FPGA: Recv ZSGSRD 35688
17-03-18 05:30:53.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.074 -07 000000606 INF: FPGA: Recv ZSGSRD 35680
17-03-18 05:30:53.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.084 -07 000000569 INF: FPGA: Recv ZSGSRD 35678
17-03-18 05:30:53.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:53.094 -07 000000629 INF: FPGA: Recv ZSGSRD 35683
17-03-18 05:30:53.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:53.104 -07 000000502 INF: FPGA: Recv ZPIEZORD 31483
17-03-18 05:30:53.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:53.114 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.3 V.
17-03-18 05:30:53.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35683 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35683 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35677 (-168.6 uncal um), Max = 35688 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:30:53.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35683, posNoise = 5, negNoise = 6
17-03-18 05:30:53.114 -07 000000610 INF: Z Motor: After move to -0.169549, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:53.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:30:53.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:53.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:53.114 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:53.114 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:53.114 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:53.114 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:53.114 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:53.114 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:53.114 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:53.114 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:53.114 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:30:53.114 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:53.124 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:53.124 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:53.124 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:30:53.124 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:53.124 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:30:53.124 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:30:53.134 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:30:53.134 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:30:53.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37215 150\n [Camera]
17-03-18 05:30:53.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:53.774 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:53.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:53.774 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:53.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:53.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:53.774 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:53.774 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:53.774 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:30:53.774 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:53.774 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:30:53.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37215 825
17-03-18 05:30:54.114 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:30:54.174 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:30:54.174 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:30:54.174 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:54.174 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:30:54.174 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:30:54.174 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:54.174 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:54.174 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:30:54.184 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:30:54.194 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:30:54.334 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:54.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:54.334 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:54.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:54.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:30:54.334 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:54.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:54.334 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:54.334 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:54.334 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:30:54.524 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:30:54.524 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:54.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37215 150' command took 2 ms to send, 1380 ms to get response, and 1386 ms overall
17-03-18 05:30:54.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:54.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169558513865591. ------
17-03-18 05:30:54.524 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:54.524 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17591 mm
17-03-18 05:30:54.524 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:54.534 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:30:54.534 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:30:54.534 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:54.534 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:54.534 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:54.534 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38429, sync = True, waitForSettling = False)
17-03-18 05:30:54.534 -07 000000629 INF: Z Motor: Moving to -0.175917 mm, started at -0.169559 mm, distance = -6.36 um
17-03-18 05:30:54.534 -07 000000606 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:30:54.544 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:30:54.544 -07 000000569 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:54.544 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:54.544 -07 000000569 INF: Y Motor: Moving 1339 steps-14
17-03-18 05:30:54.544 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:54.554 -07 000000629 INF: FPGA: Xmit ZDACW 38429\n [Z Motor]
17-03-18 05:30:54.554 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:30:54.564 -07 000000629 INF: FPGA: 'ZDACW 38429' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:30:54.564 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:54.574 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:54.574 -07 000000606 INF: FPGA: Recv ZDACR 38429
17-03-18 05:30:54.584 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:30:54.584 -07 000000629 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:30:54.734 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:30:54.734 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:30:54.734 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:54.734 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:30:54.734 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:30:54.734 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:54.744 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:54.744 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:30:54.744 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:30:54.744 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:54.744 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 212 ms overall
17-03-18 05:30:54.744 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:30:54.934 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:30:54.934 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:30:54.984 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:54.994 -07 000000606 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:30:54.994 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:30:54.994 -07 000000569 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:54.994 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:30:54.994 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 05:30:55.014 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.028963,
17-03-18 05:30:55.944 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:55.944 -07 000000629 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:30:55.954 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:55.954 -07 000000569 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:55.984 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:30:55.984 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:30:55.984 -07 000000569 INF: Y Motor: Moved to 64.8774 after 1451 ms (table move)
17-03-18 05:30:55.984 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175917 mm (DAC = 38429)
17-03-18 05:30:55.984 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:55.984 -07 000000606 INF: FPGA: Recv ZSGSRD 36671
17-03-18 05:30:55.994 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:30:55.994 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:55.994 -07 000000502 INF: FPGA: Recv ZSGSRD 36674
17-03-18 05:30:56.004 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.004 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.004 -07 000000579 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:30:56.014 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.014 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.014 -07 000000502 INF: FPGA: Recv ZSGSRD 36674
17-03-18 05:30:56.024 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.024 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.024 -07 000000606 INF: FPGA: Recv ZSGSRD 36670
17-03-18 05:30:56.034 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.034 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.034 -07 000000569 INF: FPGA: Recv ZSGSRD 36671
17-03-18 05:30:56.044 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.044 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.044 -07 000000592 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:30:56.054 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.054 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.054 -07 000000569 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:30:56.064 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.064 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.064 -07 000000592 INF: FPGA: Recv ZSGSRD 36678
17-03-18 05:30:56.074 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.074 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:56.074 -07 000000569 INF: FPGA: Recv ZSGSRD 36676
17-03-18 05:30:56.084 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.084 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:56.084 -07 000000592 INF: FPGA: Recv ZPIEZORD 32810
17-03-18 05:30:56.094 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.094 -07 000000585 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.5 V.
17-03-18 05:30:56.094 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36674 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36674 (-175.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36670 (-175.0 uncal um), Max = 36678 (-175.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:30:56.094 -07 000000585 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36674, posNoise = 4, negNoise = 4
17-03-18 05:30:56.094 -07 000000585 INF: Z Motor: After move to -0.175917, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:56.094 -07 000000585 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms
17-03-18 05:30:56.094 -07 000000585 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:30:56.144 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 05:30:56.144 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:30:56.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:56.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:56.144 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:56.144 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:56.144 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:30:56.144 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:56.154 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:56.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:30:56.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:56.154 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:30:56.164 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:30:56.164 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:30:56.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:30:56.204 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:30:56.504 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:30:56.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:30:56.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:30:56.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:30:56.544 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:30:56.544 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 05:30:56.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:30:56.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:30:56.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:56.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:30:56.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:30:56.644 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:56.644 -07 000000629 INF: Autofocus start
17-03-18 05:30:56.644 -07 000000629 INF: MeasureProfile start
17-03-18 05:30:56.644 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:56.654 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:30:56.654 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:30:56.654 -07 000000629 INF: MeasureProfile done
17-03-18 05:30:56.654 -07 000000629 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:30:56.654 -07 000000629 INF: Autofocus finished
17-03-18 05:30:56.774 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:30:56.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:30:56.854 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:30:56.854 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:30:56.854 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175924908098076. ----------
17-03-18 05:30:56.854 -07 000000610 INF: Cycle	138	Tile	7	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:30:56.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36943, sync = True, waitForSettling = True)
17-03-18 05:30:56.864 -07 000000610 INF: Z Motor: Moving to -0.169114 mm, started at -0.175925 mm, distance = 6.81 um
17-03-18 05:30:56.864 -07 000000610 INF: FPGA: Xmit ZDACW 36943\n [Z Motor]
17-03-18 05:30:56.864 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:30:56.874 -07 000000610 INF: FPGA: 'ZDACW 36943' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:30:56.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:56.874 -07 000000629 INF: FPGA: Recv ZDACR 36943
17-03-18 05:30:56.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:56.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:30:57.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.034 -07 000000592 INF: FPGA: Recv ZSGSRD 35620
17-03-18 05:30:57.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:30:57.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.044 -07 000000592 INF: FPGA: Recv ZSGSRD 35615
17-03-18 05:30:57.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.054 -07 000000382 INF: FPGA: Recv ZSGSRD 35617
17-03-18 05:30:57.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.064 -07 000000382 INF: FPGA: Recv ZSGSRD 35616
17-03-18 05:30:57.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.074 -07 000000502 INF: FPGA: Recv ZSGSRD 35615
17-03-18 05:30:57.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.084 -07 000000502 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:30:57.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.094 -07 000000502 INF: FPGA: Recv ZSGSRD 35618
17-03-18 05:30:57.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.104 -07 000000502 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:30:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.114 -07 000000502 INF: FPGA: Recv ZSGSRD 35617
17-03-18 05:30:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:30:57.124 -07 000000629 INF: FPGA: Recv ZSGSRD 35615
17-03-18 05:30:57.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:30:57.134 -07 000000012 INF: FPGA: Recv ZPIEZORD 31369
17-03-18 05:30:57.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:57.144 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.4 V.
17-03-18 05:30:57.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35616 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35614 (-168.2 uncal um), Max = 35620 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:30:57.144 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35616, posNoise = 4, negNoise = 2
17-03-18 05:30:57.144 -07 000000610 INF: Z Motor: After move to -0.169114, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:30:57.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:30:57.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:30:57.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:30:57.144 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:30:57.144 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:30:57.144 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:30:57.144 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:30:57.144 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:30:57.144 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:30:57.144 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:30:57.144 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:30:57.144 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:30:57.144 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:30:57.154 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:30:57.154 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:30:57.154 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:30:57.154 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:30:57.164 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:30:57.164 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:30:57.164 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:30:57.164 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:30:57.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37120 150\n [Camera]
17-03-18 05:30:57.364 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:30:57.804 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:30:57.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:30:57.804 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:57.804 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:57.804 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) start.
17-03-18 05:30:57.804 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:30:57.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:30:57.804 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:57.804 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:57.804 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:30:57.994 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37120 825
17-03-18 05:30:58.144 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:30:58.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:30:58.184 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:30:58.184 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:58.184 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:58.194 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:30:58.194 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:30:58.194 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:58.194 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:30:58.194 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:58.194 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:30:58.354 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:30:58.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:30:58.354 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:30:58.354 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:30:58.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:30:58.364 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:30:58.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:30:58.364 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:30:58.364 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:30:58.364 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:30:58.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:30:58.544 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:30:58.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37120 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-18 05:30:58.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:30:58.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169128091652093. ------
17-03-18 05:30:58.684 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:30:58.684 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17589 mm
17-03-18 05:30:58.684 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:30:58.684 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:30:58.684 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:30:58.684 -07 000000592 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 05:30:58.684 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38423, sync = True, waitForSettling = False)
17-03-18 05:30:58.684 -07 000000629 INF: Z Motor: Moving to -0.175889 mm, started at -0.169128 mm, distance = -6.76 um
17-03-18 05:30:58.694 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:30:58.694 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:58.694 -07 000000569 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:30:58.704 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:30:58.704 -07 000000592 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:58.704 -07 000000592 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:30:58.704 -07 000000592 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:30:58.704 -07 000000629 INF: FPGA: Xmit ZDACW 38423\n [Z Motor]
17-03-18 05:30:58.704 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:30:58.714 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:30:58.714 -07 000000629 INF: FPGA: 'ZDACW 38423' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:30:58.724 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:30:58.734 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:30:58.734 -07 000000569 INF: FPGA: Recv ZDACR 38423
17-03-18 05:30:58.744 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:30:58.744 -07 000000629 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 05:30:58.764 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:30:58.764 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:30:58.764 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:30:58.764 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:58.764 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:30:58.764 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:30:58.764 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:30:58.774 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:30:58.774 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:30:58.774 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:30:58.914 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:30:58.914 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:30:59.094 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:30:59.094 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:30:59.144 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:30:59.154 -07 000000467 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:30:59.154 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:30:59.154 -07 000000592 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:30:59.154 -07 000000592 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:30:59.154 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 05:31:00.104 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:00.104 -07 000000629 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:31:00.114 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.114 -07 000000592 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:00.144 -07 000000592 INF: Y Motor: After move to 65.722610, error = -0.010208, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:00.144 -07 000000592 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:31:00.144 -07 000000592 INF: Y Motor: Moved to 65.7124 after 1463 ms (table move)
17-03-18 05:31:00.154 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175889 mm (DAC = 38423)
17-03-18 05:31:00.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.154 -07 000000585 INF: FPGA: Recv ZSGSRD 36665
17-03-18 05:31:00.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:31:00.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.164 -07 000000592 INF: FPGA: Recv ZSGSRD 36666
17-03-18 05:31:00.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.174 -07 000000606 INF: FPGA: Recv ZSGSRD 36664
17-03-18 05:31:00.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.184 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.184 -07 000000467 INF: FPGA: Recv ZSGSRD 36669
17-03-18 05:31:00.194 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.194 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.194 -07 000000569 INF: FPGA: Recv ZSGSRD 36666
17-03-18 05:31:00.204 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.204 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.204 -07 000000592 INF: FPGA: Recv ZSGSRD 36668
17-03-18 05:31:00.214 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.214 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.214 -07 000000569 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:31:00.224 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.224 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.224 -07 000000502 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:31:00.234 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.234 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.234 -07 000000455 INF: FPGA: Recv ZSGSRD 36676
17-03-18 05:31:00.244 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.244 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:00.244 -07 000000629 INF: FPGA: Recv ZSGSRD 36662
17-03-18 05:31:00.254 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.254 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:00.254 -07 000000606 INF: FPGA: Recv ZPIEZORD 32765
17-03-18 05:31:00.264 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:00.264 -07 000000012 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.6 V.
17-03-18 05:31:00.264 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36668 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36667 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36662 (-175.0 uncal um), Max = 36676 (-175.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:00.264 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36668, posNoise = 8, negNoise = 6
17-03-18 05:31:00.264 -07 000000012 INF: Z Motor: After move to -0.175889, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:00.264 -07 000000012 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:31:00.264 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:00.314 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:31:00.314 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:00.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:00.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:00.314 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:00.324 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:00.324 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:00.324 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:00.324 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:00.324 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:00.324 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:00.324 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:00.334 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:31:00.334 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:31:00.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:00.384 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.02213,
17-03-18 05:31:00.384 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:00.684 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:00.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:00.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:00.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:00.724 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:00.724 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:00.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:31:00.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:31:00.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:00.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:00.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:31:00.824 -07 000000569 INF: Autofocus start
17-03-18 05:31:00.824 -07 000000569 INF: MeasureProfile start
17-03-18 05:31:00.824 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:00.824 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:00.834 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:00.834 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:00.834 -07 000000569 INF: MeasureProfile done
17-03-18 05:31:00.834 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:31:00.834 -07 000000569 INF: Autofocus finished
17-03-18 05:31:01.034 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:01.034 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:01.034 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71240234375, Z-position -0.175886362825226. ----------
17-03-18 05:31:01.044 -07 000000610 INF: Cycle	138	Tile	8	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:01.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36938, sync = True, waitForSettling = True)
17-03-18 05:31:01.044 -07 000000610 INF: Z Motor: Moving to -0.169091 mm, started at -0.175886 mm, distance = 6.80 um
17-03-18 05:31:01.044 -07 000000610 INF: FPGA: Xmit ZDACW 36938\n [Z Motor]
17-03-18 05:31:01.044 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 05:31:01.054 -07 000000610 INF: FPGA: 'ZDACW 36938' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:01.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:01.054 -07 000000467 INF: FPGA: Recv ZDACR 36938
17-03-18 05:31:01.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:01.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.214 -07 000000569 INF: FPGA: Recv ZSGSRD 35607
17-03-18 05:31:01.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:01.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.224 -07 000000592 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:31:01.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.234 -07 000000502 INF: FPGA: Recv ZSGSRD 35609
17-03-18 05:31:01.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.244 -07 000000592 INF: FPGA: Recv ZSGSRD 35611
17-03-18 05:31:01.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.254 -07 000000502 INF: FPGA: Recv ZSGSRD 35608
17-03-18 05:31:01.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.264 -07 000000012 INF: FPGA: Recv ZSGSRD 35611
17-03-18 05:31:01.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.274 -07 000000502 INF: FPGA: Recv ZSGSRD 35614
17-03-18 05:31:01.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.284 -07 000000012 INF: FPGA: Recv ZSGSRD 35608
17-03-18 05:31:01.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.294 -07 000000502 INF: FPGA: Recv ZSGSRD 35611
17-03-18 05:31:01.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:01.304 -07 000000592 INF: FPGA: Recv ZSGSRD 35607
17-03-18 05:31:01.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:01.314 -07 000000502 INF: FPGA: Recv ZPIEZORD 31377
17-03-18 05:31:01.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:01.324 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 05:31:01.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35607 (-168.2 uncal um), Max = 35614 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:31:01.324 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 4, negNoise = 3
17-03-18 05:31:01.324 -07 000000610 INF: Z Motor: After move to -0.169091, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:01.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:31:01.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:01.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:01.324 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:01.324 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:01.324 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:01.324 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:01.324 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:01.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:01.324 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:31:01.324 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:01.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:01.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:01.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:01.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:01.334 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:01.334 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:01.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:31:01.344 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:01.344 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:31:01.344 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:31:01.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37115 150\n [Camera]
17-03-18 05:31:01.544 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:01.774 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:01.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:01.984 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:01.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:01.984 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:01.984 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:01.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:01.984 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:01.994 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:01.994 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:01.994 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:01.994 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:02.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37115 825
17-03-18 05:31:02.324 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:02.364 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 05:31:02.364 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 05:31:02.364 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:02.364 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:02.364 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:31:02.364 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 05:31:02.364 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:31:02.364 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:02.374 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:02.384 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:31:02.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:02.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:02.544 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:02.544 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:02.544 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:31:02.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:02.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:02.544 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:02.544 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:02.544 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:31:02.734 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:02.734 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:02.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37115 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-18 05:31:02.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:02.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71240234375, Z-Position -0.169089546379243. ------
17-03-18 05:31:02.864 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17556 mm
17-03-18 05:31:02.864 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:02.864 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:02.864 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:31:02.864 -07 000000606 INF: Y Motor: Moving to 66.5526 mm, started at 65.7124 mm, delta = 0.8402 mm
17-03-18 05:31:02.864 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:02.864 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38350, sync = True, waitForSettling = False)
17-03-18 05:31:02.864 -07 000000012 INF: Z Motor: Moving to -0.175555 mm, started at -0.169090 mm, distance = -6.47 um
17-03-18 05:31:02.874 -07 000000012 INF: FPGA: Xmit ZDACW 38350\n [Z Motor]
17-03-18 05:31:02.874 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:31:02.874 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:31:02.884 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:02.884 -07 000000012 INF: FPGA: 'ZDACW 38350' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:31:02.884 -07 000000585 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:31:02.894 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:02.894 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:31:02.894 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:02.894 -07 000000606 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:02.894 -07 000000606 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:31:02.904 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:02.904 -07 000000455 INF: FPGA: Recv ZDACR 38350
17-03-18 05:31:02.914 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:02.914 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:02.914 -07 000000012 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 05:31:02.934 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:31:02.934 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:31:02.934 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:02.934 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:31:02.934 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:31:02.934 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:02.944 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:02.944 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:02.944 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:31:02.944 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:31:03.094 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:03.094 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:31:03.284 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:31:03.284 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:31:03.334 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:03.344 -07 000000592 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:31:03.344 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 05:31:03.344 -07 000000606 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:03.344 -07 000000606 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:31:03.344 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.138 mm/sec
17-03-18 05:31:04.294 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:04.294 -07 000000585 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:31:04.304 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:04.304 -07 000000606 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:04.334 -07 000000606 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:04.334 -07 000000606 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:04.334 -07 000000606 INF: Y Motor: Moved to 66.5381 after 1469 ms (table move)
17-03-18 05:31:04.334 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175555 mm (DAC = 38350)
17-03-18 05:31:04.334 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.344 -07 000000591 INF: FPGA: Recv ZSGSRD 36620
17-03-18 05:31:04.344 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:31:04.344 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.344 -07 000000591 INF: FPGA: Recv ZSGSRD 36617
17-03-18 05:31:04.354 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:04.354 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.354 -07 000000569 INF: FPGA: Recv ZSGSRD 36619
17-03-18 05:31:04.364 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.364 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.364 -07 000000569 INF: FPGA: Recv ZSGSRD 36616
17-03-18 05:31:04.374 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.374 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36614
17-03-18 05:31:04.384 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.384 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.384 -07 000000467 INF: FPGA: Recv ZSGSRD 36616
17-03-18 05:31:04.394 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.394 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.394 -07 000000501 INF: FPGA: Recv ZSGSRD 36614
17-03-18 05:31:04.404 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.404 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.404 -07 000000501 INF: FPGA: Recv ZSGSRD 36611
17-03-18 05:31:04.414 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.414 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.414 -07 000000467 INF: FPGA: Recv ZSGSRD 36621
17-03-18 05:31:04.424 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.424 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:04.424 -07 000000501 INF: FPGA: Recv ZSGSRD 36620
17-03-18 05:31:04.434 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.434 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:04.434 -07 000000501 INF: FPGA: Recv ZPIEZORD 32747
17-03-18 05:31:04.444 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:04.444 -07 000000629 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.6 V.
17-03-18 05:31:04.444 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36617 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36616 (-174.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36621 (-174.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:04.444 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36617, posNoise = 4, negNoise = 6
17-03-18 05:31:04.444 -07 000000629 INF: Z Motor: After move to -0.175555, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:04.444 -07 000000629 INF: Z Motor: Settle wait time = 1471 ms, measure time = 102 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:31:04.444 -07 000000629 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:04.494 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:31:04.494 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:04.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:04.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:04.494 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:04.494 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:04.494 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:04.494 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:04.494 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:31:04.494 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:04.504 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:04.504 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:04.504 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:31:04.504 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:31:04.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:04.554 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:04.854 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:04.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:04.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:04.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:04.894 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:04.894 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:04.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:31:04.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:31:04.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:04.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:04.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:31:04.994 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:04.994 -07 000000591 INF: Autofocus start
17-03-18 05:31:04.994 -07 000000591 INF: MeasureProfile start
17-03-18 05:31:04.994 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:05.004 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:05.004 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:05.004 -07 000000591 INF: MeasureProfile done
17-03-18 05:31:05.004 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:31:05.004 -07 000000591 INF: Autofocus finished
17-03-18 05:31:05.204 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:05.204 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:05.204 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175558728005996. ----------
17-03-18 05:31:05.204 -07 000000610 INF: Cycle	138	Tile	9	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:05.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36847, sync = True, waitForSettling = True)
17-03-18 05:31:05.214 -07 000000610 INF: Z Motor: Moving to -0.168675 mm, started at -0.175559 mm, distance = 6.88 um
17-03-18 05:31:05.214 -07 000000610 INF: FPGA: Xmit ZDACW 36847\n [Z Motor]
17-03-18 05:31:05.214 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:31:05.224 -07 000000610 INF: FPGA: 'ZDACW 36847' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:05.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:05.224 -07 000000591 INF: FPGA: Recv ZDACR 36847
17-03-18 05:31:05.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:05.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.384 -07 000000501 INF: FPGA: Recv ZSGSRD 35547
17-03-18 05:31:05.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.394 -07 000000585 INF: FPGA: Recv ZSGSRD 35548
17-03-18 05:31:05.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35549
17-03-18 05:31:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35545
17-03-18 05:31:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.444 -07 000000569 INF: FPGA: Recv ZSGSRD 35546
17-03-18 05:31:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:05.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.464 -07 000000592 INF: FPGA: Recv ZSGSRD 35547
17-03-18 05:31:05.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:05.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.474 -07 000000012 INF: FPGA: Recv ZSGSRD 35550
17-03-18 05:31:05.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.504 -07 000000455 INF: FPGA: Recv ZSGSRD 35543
17-03-18 05:31:05.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:05.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35549
17-03-18 05:31:05.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:05.534 -07 000000012 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:31:05.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:05.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:05.544 -07 000000467 INF: FPGA: Recv ZPIEZORD 31328
17-03-18 05:31:05.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:05.554 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.3 V.
17-03-18 05:31:05.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35546 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35547 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35539 (-167.8 uncal um), Max = 35550 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:31:05.554 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35546, posNoise = 4, negNoise = 7
17-03-18 05:31:05.554 -07 000000610 INF: Z Motor: After move to -0.168675, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:05.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms)
17-03-18 05:31:05.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:05.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:05.554 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:05.554 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:05.554 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:05.554 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:05.554 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:05.554 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:05.554 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:31:05.554 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:05.554 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:31:05.554 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:05.564 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:31:05.564 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:05.564 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:05.564 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:05.564 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:31:05.574 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:05.574 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:31:05.574 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:31:05.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37024 150\n [Camera]
17-03-18 05:31:05.754 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.997626,
17-03-18 05:31:05.774 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:06.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:06.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:06.214 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:06.214 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:06.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:06.214 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:06.214 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:06.214 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:31:06.214 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:06.214 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:06.404 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37024 825
17-03-18 05:31:06.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:06.594 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:31:06.594 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:31:06.594 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:06.604 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:06.604 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:31:06.604 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:31:06.604 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:06.604 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:31:06.604 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:31:06.604 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:31:06.764 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:06.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:06.764 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:06.764 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:06.764 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:31:06.774 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:06.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:06.774 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:06.774 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:06.774 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:31:06.774 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:06.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:06.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:31:06.954 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:06.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37024 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-18 05:31:06.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:06.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.16867839680217. ------
17-03-18 05:31:06.964 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:06.964 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17543 mm
17-03-18 05:31:06.964 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:06.964 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:06.964 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:31:06.964 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 05:31:06.964 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38322, sync = True, waitForSettling = False)
17-03-18 05:31:06.964 -07 000000591 INF: Z Motor: Moving to -0.175427 mm, started at -0.168678 mm, distance = -6.75 um
17-03-18 05:31:06.974 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:06.974 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:06.974 -07 000000585 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:31:06.984 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:31:06.984 -07 000000502 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:06.984 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:06.984 -07 000000502 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:31:06.984 -07 000000591 INF: FPGA: Xmit ZDACW 38322\n [Z Motor]
17-03-18 05:31:06.984 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:31:06.994 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:06.994 -07 000000591 INF: FPGA: 'ZDACW 38322' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:31:07.004 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:07.014 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:07.014 -07 000000581 INF: FPGA: Recv ZDACR 38322
17-03-18 05:31:07.024 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:07.024 -07 000000591 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:31:07.174 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:31:07.174 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:31:07.174 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:07.174 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:31:07.174 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:31:07.174 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:07.174 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:07.174 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:07.184 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:31:07.184 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:31:07.194 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:07.194 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:31:07.374 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:31:07.374 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:31:07.424 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:07.434 -07 000000585 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:31:07.444 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:07.444 -07 000000502 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:07.444 -07 000000502 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:31:07.444 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 05:31:08.394 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:08.394 -07 000000569 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:31:08.404 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.404 -07 000000502 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:08.434 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:08.434 -07 000000502 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:31:08.434 -07 000000502 INF: Y Motor: Moved to 67.3706 after 1462 ms (table move)
17-03-18 05:31:08.434 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175427 mm (DAC = 38322)
17-03-18 05:31:08.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.434 -07 000000501 INF: FPGA: Recv ZSGSRD 36606
17-03-18 05:31:08.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:08.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.444 -07 000000437 INF: FPGA: Recv ZSGSRD 36593
17-03-18 05:31:08.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.454 -07 000000012 INF: FPGA: Recv ZSGSRD 36596
17-03-18 05:31:08.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.464 -07 000000581 INF: FPGA: Recv ZSGSRD 36592
17-03-18 05:31:08.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.474 -07 000000437 INF: FPGA: Recv ZSGSRD 36597
17-03-18 05:31:08.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.484 -07 000000569 INF: FPGA: Recv ZSGSRD 36599
17-03-18 05:31:08.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.494 -07 000000585 INF: FPGA: Recv ZSGSRD 36597
17-03-18 05:31:08.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.504 -07 000000455 INF: FPGA: Recv ZSGSRD 36608
17-03-18 05:31:08.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.514 -07 000000561 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:31:08.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:08.524 -07 000000581 INF: FPGA: Recv ZSGSRD 36598
17-03-18 05:31:08.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.534 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:08.534 -07 000000437 INF: FPGA: Recv ZPIEZORD 32720
17-03-18 05:31:08.544 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:08.544 -07 000000467 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.6 V.
17-03-18 05:31:08.544 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36598 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36598 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36592 (-174.5 uncal um), Max = 36608 (-174.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:08.544 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36598, posNoise = 10, negNoise = 6
17-03-18 05:31:08.544 -07 000000467 INF: Z Motor: After move to -0.175427, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:08.544 -07 000000467 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:31:08.544 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:08.594 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 05:31:08.594 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:08.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:08.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:08.594 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:08.594 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:08.594 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:08.594 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:08.594 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:08.594 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:08.604 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:08.604 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:08.614 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:31:08.614 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:31:08.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:08.664 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:08.964 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:08.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:08.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:08.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:31:09.004 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:09.004 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:09.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:31:09.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:31:09.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:09.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:31:09.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:31:09.104 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:09.104 -07 000000581 INF: Autofocus start
17-03-18 05:31:09.104 -07 000000581 INF: MeasureProfile start
17-03-18 05:31:09.104 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:09.114 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:09.114 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:09.124 -07 000000581 INF: MeasureProfile done
17-03-18 05:31:09.124 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:31:09.124 -07 000000581 INF: Autofocus finished
17-03-18 05:31:09.314 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:09.314 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:09.314 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175436667975302. ----------
17-03-18 05:31:09.314 -07 000000610 INF: Cycle	138	Tile	10	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:09.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36837, sync = True, waitForSettling = True)
17-03-18 05:31:09.324 -07 000000610 INF: Z Motor: Moving to -0.168629 mm, started at -0.175437 mm, distance = 6.81 um
17-03-18 05:31:09.324 -07 000000610 INF: FPGA: Xmit ZDACW 36837\n [Z Motor]
17-03-18 05:31:09.324 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:31:09.334 -07 000000610 INF: FPGA: 'ZDACW 36837' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:31:09.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:09.334 -07 000000585 INF: FPGA: Recv ZDACR 36837
17-03-18 05:31:09.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.494 -07 000000561 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:31:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.504 -07 000000437 INF: FPGA: Recv ZSGSRD 35546
17-03-18 05:31:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.514 -07 000000444 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:31:09.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.524 -07 000000455 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:31:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.534 -07 000000467 INF: FPGA: Recv ZSGSRD 35537
17-03-18 05:31:09.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.544 -07 000000581 INF: FPGA: Recv ZSGSRD 35544
17-03-18 05:31:09.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.554 -07 000000501 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:31:09.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.564 -07 000000592 INF: FPGA: Recv ZSGSRD 35536
17-03-18 05:31:09.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.574 -07 000000012 INF: FPGA: Recv ZSGSRD 35536
17-03-18 05:31:09.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:09.584 -07 000000585 INF: FPGA: Recv ZSGSRD 35541
17-03-18 05:31:09.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:09.594 -07 000000501 INF: FPGA: Recv ZPIEZORD 31338
17-03-18 05:31:09.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:09.604 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 05:31:09.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35539 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35536 (-167.7 uncal um), Max = 35546 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:31:09.604 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 6, negNoise = 4
17-03-18 05:31:09.604 -07 000000610 INF: Z Motor: After move to -0.168629, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:09.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:31:09.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:09.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:09.604 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:09.604 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:09.604 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:09.604 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:09.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:09.604 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:09.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:31:09.604 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:09.604 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:09.604 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:09.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:09.614 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:09.614 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:09.614 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:09.624 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:31:09.624 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:09.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:31:09.624 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:09.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37014 150\n [Camera]
17-03-18 05:31:09.824 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:10.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:10.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:10.264 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:10.264 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:10.264 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) start.
17-03-18 05:31:10.264 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:10.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:10.264 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:10.264 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:10.264 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:10.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37014 825
17-03-18 05:31:10.604 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:10.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:31:10.644 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:31:10.644 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:10.644 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:10.644 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:31:10.644 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:31:10.644 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:31:10.644 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:10.654 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:10.654 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:31:10.814 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:10.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:10.814 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:10.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:10.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:31:10.824 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:10.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:10.824 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:10.824 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:10.824 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:31:11.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:11.004 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:11.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37014 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-18 05:31:11.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:11.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168639851529319. ------
17-03-18 05:31:11.134 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:11.134 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17492 mm
17-03-18 05:31:11.134 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:11.144 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:11.144 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:31:11.144 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:31:11.144 -07 000000444 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 05:31:11.144 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 38212, sync = True, waitForSettling = False)
17-03-18 05:31:11.144 -07 000000592 INF: Z Motor: Moving to -0.174923 mm, started at -0.168640 mm, distance = -6.28 um
17-03-18 05:31:11.144 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:11.164 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:11.164 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.988112,
17-03-18 05:31:11.164 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:31:11.174 -07 000000592 INF: FPGA: Xmit ZDACW 38212\n [Z Motor]
17-03-18 05:31:11.174 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:31:11.174 -07 000000444 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:11.174 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:31:11.174 -07 000000444 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:11.174 -07 000000444 INF: Y Motor: Moving 1346 steps-25
17-03-18 05:31:11.184 -07 000000592 INF: FPGA: 'ZDACW 38212' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 05:31:11.194 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:11.204 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:11.204 -07 000000424 INF: FPGA: Recv ZDACR 38212
17-03-18 05:31:11.214 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:11.214 -07 000000592 INF: Z Motor: MoveAbsStepped took 68 ms (did NOT wait for settling yet))
17-03-18 05:31:11.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 05:31:11.214 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:31:11.214 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:11.214 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:31:11.214 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:31:11.214 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:31:11.214 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:11.224 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:31:11.224 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:31:11.224 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:31:11.344 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:11.344 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:31:11.564 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 05:31:11.564 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 05:31:11.614 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:11.624 -07 000000424 INF: FPGA: Recv YRDPOS 139681
17-03-18 05:31:11.624 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:31:11.624 -07 000000444 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:11.624 -07 000000444 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:31:11.624 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.842 mm, average velocity = 2.148 mm/sec
17-03-18 05:31:11.774 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:11.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:12.574 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:12.574 -07 000000569 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:31:12.584 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.584 -07 000000444 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:12.614 -07 000000444 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:12.614 -07 000000444 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:12.614 -07 000000444 INF: Y Motor: Moved to 68.2041 after 1470 ms (table move)
17-03-18 05:31:12.614 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174923 mm (DAC = 38212)
17-03-18 05:31:12.614 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.614 -07 000000561 INF: FPGA: Recv ZSGSRD 36525
17-03-18 05:31:12.624 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:31:12.624 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.624 -07 000000569 INF: FPGA: Recv ZSGSRD 36518
17-03-18 05:31:12.634 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.634 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.634 -07 000000592 INF: FPGA: Recv ZSGSRD 36514
17-03-18 05:31:12.644 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.644 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.644 -07 000000591 INF: FPGA: Recv ZSGSRD 36517
17-03-18 05:31:12.654 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.654 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.654 -07 000000561 INF: FPGA: Recv ZSGSRD 36511
17-03-18 05:31:12.664 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.664 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.664 -07 000000581 INF: FPGA: Recv ZSGSRD 36525
17-03-18 05:31:12.674 -07 000000585 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.674 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.674 -07 000000592 INF: FPGA: Recv ZSGSRD 36519
17-03-18 05:31:12.684 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.684 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.684 -07 000000591 INF: FPGA: Recv ZSGSRD 36521
17-03-18 05:31:12.694 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.694 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.694 -07 000000569 INF: FPGA: Recv ZSGSRD 36524
17-03-18 05:31:12.704 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.704 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:12.704 -07 000000424 INF: FPGA: Recv ZSGSRD 36521
17-03-18 05:31:12.714 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.714 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:12.714 -07 000000561 INF: FPGA: Recv ZPIEZORD 32634
17-03-18 05:31:12.724 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:12.724 -07 000000585 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.6 V.
17-03-18 05:31:12.724 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36520 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36520 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36511 (-174.0 uncal um), Max = 36525 (-174.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:31:12.724 -07 000000585 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36520, posNoise = 5, negNoise = 9
17-03-18 05:31:12.724 -07 000000585 INF: Z Motor: After move to -0.174923, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:12.724 -07 000000585 INF: Z Motor: Settle wait time = 1473 ms, measure time = 105 ms (allowed 150 ms), total time = 1578 ms
17-03-18 05:31:12.724 -07 000000585 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:12.774 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 05:31:12.774 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:12.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:12.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:12.774 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:12.774 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:12.774 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:12.774 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:12.774 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:31:12.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:12.784 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:12.784 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:12.794 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:31:12.794 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:31:12.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:12.834 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:13.134 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:13.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:13.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:13.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:13.174 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:13.174 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:13.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:31:13.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:31:13.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:13.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:31:13.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:31:13.274 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:13.274 -07 000000502 INF: Autofocus start
17-03-18 05:31:13.274 -07 000000502 INF: MeasureProfile start
17-03-18 05:31:13.274 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:13.284 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:13.284 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:13.284 -07 000000502 INF: MeasureProfile done
17-03-18 05:31:13.284 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:31:13.284 -07 000000502 INF: Autofocus finished
17-03-18 05:31:13.484 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:13.484 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:13.484 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174935579428245. ----------
17-03-18 05:31:13.494 -07 000000610 INF: Cycle	138	Tile	11	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:13.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36709, sync = True, waitForSettling = True)
17-03-18 05:31:13.494 -07 000000610 INF: Z Motor: Moving to -0.168043 mm, started at -0.174936 mm, distance = 6.89 um
17-03-18 05:31:13.494 -07 000000610 INF: FPGA: Xmit ZDACW 36709\n [Z Motor]
17-03-18 05:31:13.494 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:31:13.504 -07 000000610 INF: FPGA: 'ZDACW 36709' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:31:13.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:13.504 -07 000000592 INF: FPGA: Recv ZDACR 36709
17-03-18 05:31:13.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:13.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.664 -07 000000561 INF: FPGA: Recv ZSGSRD 35452
17-03-18 05:31:13.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:13.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.674 -07 000000592 INF: FPGA: Recv ZSGSRD 35449
17-03-18 05:31:13.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.684 -07 000000569 INF: FPGA: Recv ZSGSRD 35448
17-03-18 05:31:13.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.694 -07 000000592 INF: FPGA: Recv ZSGSRD 35445
17-03-18 05:31:13.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.704 -07 000000591 INF: FPGA: Recv ZSGSRD 35451
17-03-18 05:31:13.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.714 -07 000000592 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:31:13.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.724 -07 000000569 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:31:13.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.734 -07 000000592 INF: FPGA: Recv ZSGSRD 35445
17-03-18 05:31:13.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.744 -07 000000561 INF: FPGA: Recv ZSGSRD 35448
17-03-18 05:31:13.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:13.754 -07 000000591 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:31:13.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:13.764 -07 000000585 INF: FPGA: Recv ZPIEZORD 31208
17-03-18 05:31:13.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:13.774 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.3 V.
17-03-18 05:31:13.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35449 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35450 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35445 (-167.2 uncal um), Max = 35454 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:31:13.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35449, posNoise = 5, negNoise = 4
17-03-18 05:31:13.774 -07 000000610 INF: Z Motor: After move to -0.168043, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:13.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:31:13.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:13.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:13.774 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:13.774 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:13.774 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:13.774 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:13.774 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:13.774 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:13.774 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:13.774 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:13.774 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:13.774 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:13.784 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:13.784 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:13.784 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:31:13.784 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:13.794 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:31:13.794 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:31:13.794 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:31:13.794 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:31:13.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36886 150\n [Camera]
17-03-18 05:31:13.994 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:14.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:14.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:14.434 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:14.434 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:14.434 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:14.434 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:14.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:14.434 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:14.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:14.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:14.624 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36886 825
17-03-18 05:31:14.774 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:14.814 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:31:14.814 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:31:14.814 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:14.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 05:31:14.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 05:31:14.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:14.824 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:14.824 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:31:14.824 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:14.824 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:31:14.984 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:14.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:14.984 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:14.984 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:14.984 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:31:14.994 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:14.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:14.994 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:14.994 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:14.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:31:15.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:31:15.174 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:15.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36886 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-18 05:31:15.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:15.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168055248224419. ------
17-03-18 05:31:15.184 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:15.184 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17470 mm
17-03-18 05:31:15.184 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:15.184 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38164, sync = True, waitForSettling = False)
17-03-18 05:31:15.184 -07 000000444 INF: Z Motor: Moving to -0.174704 mm, started at -0.168055 mm, distance = -6.65 um
17-03-18 05:31:15.184 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:31:15.184 -07 000000581 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:31:15.184 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:15.194 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:31:15.194 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:15.314 -07 000000444 INF: FPGA: Xmit ZDACW 38164\n [Z Motor]
17-03-18 05:31:15.314 -07 000000585 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:31:15.314 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 05:31:15.314 -07 000000581 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:15.314 -07 000000581 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:15.314 -07 000000581 INF: Y Motor: Moving 1342 steps-18
17-03-18 05:31:15.314 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:31:15.324 -07 000000444 INF: FPGA: 'ZDACW 38164' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-18 05:31:15.324 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:15.334 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:15.344 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:15.344 -07 000000585 INF: FPGA: Recv ZDACR 38164
17-03-18 05:31:15.354 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:31:15.354 -07 000000444 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-18 05:31:15.394 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:31:15.394 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:31:15.394 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:15.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:31:15.394 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:31:15.394 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:15.394 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:15.394 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:31:15.394 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:31:15.404 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:31:15.534 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:15.534 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 342 ms overall
17-03-18 05:31:15.694 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:31:15.694 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:31:15.744 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:15.754 -07 000000444 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:31:15.754 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:31:15.754 -07 000000581 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:15.754 -07 000000581 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 05:31:15.754 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.172 mm/sec
17-03-18 05:31:16.564 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.994908,
17-03-18 05:31:16.704 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:16.704 -07 000000437 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:31:16.714 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:16.714 -07 000000581 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:16.744 -07 000000581 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:16.744 -07 000000581 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:31:16.744 -07 000000581 INF: Y Motor: Moved to 69.0259 after 1555 ms (table move)
17-03-18 05:31:16.744 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174704 mm (DAC = 38164)
17-03-18 05:31:16.744 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.754 -07 000000501 INF: FPGA: Recv ZSGSRD 36477
17-03-18 05:31:16.754 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 05:31:16.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.754 -07 000000467 INF: FPGA: Recv ZSGSRD 36490
17-03-18 05:31:16.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:16.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.764 -07 000000502 INF: FPGA: Recv ZSGSRD 36482
17-03-18 05:31:16.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.774 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:16.774 -07 000000561 INF: FPGA: Recv ZSGSRD 36476
17-03-18 05:31:16.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.784 -07 000000502 INF: FPGA: Recv ZSGSRD 36482
17-03-18 05:31:16.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.794 -07 000000501 INF: FPGA: Recv ZSGSRD 36490
17-03-18 05:31:16.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.804 -07 000000585 INF: FPGA: Recv ZSGSRD 36486
17-03-18 05:31:16.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.814 -07 000000437 INF: FPGA: Recv ZSGSRD 36485
17-03-18 05:31:16.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36486
17-03-18 05:31:16.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:16.834 -07 000000629 INF: FPGA: Recv ZSGSRD 36483
17-03-18 05:31:16.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.844 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:16.844 -07 000000592 INF: FPGA: Recv ZPIEZORD 32603
17-03-18 05:31:16.854 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:16.854 -07 000000579 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.6 V.
17-03-18 05:31:16.854 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36484 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36484 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36476 (-173.8 uncal um), Max = 36490 (-173.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:31:16.854 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36484, posNoise = 6, negNoise = 8
17-03-18 05:31:16.854 -07 000000579 INF: Z Motor: After move to -0.174704, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:16.854 -07 000000579 INF: Z Motor: Settle wait time = 1559 ms, measure time = 104 ms (allowed 150 ms), total time = 1663 ms
17-03-18 05:31:16.854 -07 000000579 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:16.904 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-18 05:31:16.904 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:16.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:16.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:16.904 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:16.904 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:16.904 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:16.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:16.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:16.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:16.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:16.914 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:16.924 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:31:16.924 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:31:16.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:16.974 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:17.274 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:17.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:17.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:17.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:17.314 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:17.314 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:17.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:31:17.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:31:17.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:17.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:17.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:31:17.414 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:17.414 -07 000000581 INF: Autofocus start
17-03-18 05:31:17.414 -07 000000581 INF: MeasureProfile start
17-03-18 05:31:17.414 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:17.424 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:17.424 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:17.434 -07 000000581 INF: MeasureProfile done
17-03-18 05:31:17.434 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:31:17.434 -07 000000581 INF: Autofocus finished
17-03-18 05:31:17.624 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:17.624 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:17.624 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174704307791142. ----------
17-03-18 05:31:17.624 -07 000000610 INF: Cycle	138	Tile	12	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:17.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36697, sync = True, waitForSettling = True)
17-03-18 05:31:17.634 -07 000000610 INF: Z Motor: Moving to -0.167988 mm, started at -0.174704 mm, distance = 6.72 um
17-03-18 05:31:17.634 -07 000000610 INF: FPGA: Xmit ZDACW 36697\n [Z Motor]
17-03-18 05:31:17.634 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:31:17.644 -07 000000610 INF: FPGA: 'ZDACW 36697' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:17.644 -07 000000561 INF: FPGA: Recv ZDACR 36697
17-03-18 05:31:17.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:17.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35435
17-03-18 05:31:17.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.814 -07 000000012 INF: FPGA: Recv ZSGSRD 35436
17-03-18 05:31:17.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35443
17-03-18 05:31:17.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35440
17-03-18 05:31:17.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35439
17-03-18 05:31:17.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.854 -07 000000591 INF: FPGA: Recv ZSGSRD 35438
17-03-18 05:31:17.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35441
17-03-18 05:31:17.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.874 -07 000000012 INF: FPGA: Recv ZSGSRD 35443
17-03-18 05:31:17.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.884 -07 000000455 INF: FPGA: Recv ZSGSRD 35439
17-03-18 05:31:17.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:17.894 -07 000000561 INF: FPGA: Recv ZSGSRD 35438
17-03-18 05:31:17.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:17.904 -07 000000012 INF: FPGA: Recv ZPIEZORD 31214
17-03-18 05:31:17.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:17.914 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-18 05:31:17.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35439 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35439 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35435 (-167.1 uncal um), Max = 35443 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:31:17.914 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35439, posNoise = 4, negNoise = 4
17-03-18 05:31:17.914 -07 000000610 INF: Z Motor: After move to -0.167988, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:17.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:31:17.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:17.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:17.914 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:17.914 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:17.914 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:17.914 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:17.914 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:17.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:17.914 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:31:17.914 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:17.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:17.914 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:17.914 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:17.914 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:17.914 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:17.914 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:17.924 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:31:17.924 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:31:17.924 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:31:17.924 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:31:17.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36873 150\n [Camera]
17-03-18 05:31:18.134 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:18.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:18.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:18.574 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:18.574 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:18.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:18.574 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:18.574 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:18.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:31:18.574 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:18.574 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:18.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36873 825
17-03-18 05:31:18.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:18.954 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:31:18.954 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 05:31:18.954 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:18.954 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:31:18.954 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:31:18.954 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:18.964 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:18.964 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:31:18.964 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:18.964 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:31:19.124 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:19.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:19.124 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:19.124 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:19.124 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:31:19.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:19.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:19.134 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:19.134 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:19.134 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:31:19.314 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:31:19.314 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:19.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36873 150' command took 2 ms to send, 1379 ms to get response, and 1388 ms overall
17-03-18 05:31:19.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:19.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167991006103002. ------
17-03-18 05:31:19.324 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:19.324 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17425 mm
17-03-18 05:31:19.324 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:19.324 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:31:19.324 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:31:19.324 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38064, sync = True, waitForSettling = False)
17-03-18 05:31:19.324 -07 000000606 INF: Z Motor: Moving to -0.174246 mm, started at -0.167991 mm, distance = -6.25 um
17-03-18 05:31:19.334 -07 000000606 INF: FPGA: Xmit ZDACW 38064\n [Z Motor]
17-03-18 05:31:19.334 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:19.334 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:19.334 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:31:19.344 -07 000000606 INF: FPGA: 'ZDACW 38064' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:19.344 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:19.354 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:19.354 -07 000000591 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:31:19.364 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:19.364 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:31:19.364 -07 000000569 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:19.364 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:19.364 -07 000000569 INF: Y Motor: Moving 1355 steps-34
17-03-18 05:31:19.364 -07 000000501 INF: FPGA: Recv ZDACR 38064
17-03-18 05:31:19.374 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:19.374 -07 000000606 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 05:31:19.374 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:19.524 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:31:19.524 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:31:19.524 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:19.524 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:31:19.524 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:31:19.524 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:19.524 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:19.534 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:31:19.534 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:31:19.534 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:31:19.544 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:19.544 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 05:31:19.754 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:31:19.754 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 05:31:19.794 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:19.804 -07 000000501 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:31:19.814 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:19.814 -07 000000569 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:19.814 -07 000000569 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:31:19.814 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.847 mm, average velocity = 2.171 mm/sec
17-03-18 05:31:20.764 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:20.764 -07 000000444 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:31:20.774 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:20.774 -07 000000569 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:20.804 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:20.804 -07 000000569 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:20.804 -07 000000569 INF: Y Motor: Moved to 69.8623 after 1471 ms (table move)
17-03-18 05:31:20.804 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174246 mm (DAC = 38064)
17-03-18 05:31:20.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.804 -07 000000592 INF: FPGA: Recv ZSGSRD 36415
17-03-18 05:31:20.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:31:20.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.814 -07 000000569 INF: FPGA: Recv ZSGSRD 36413
17-03-18 05:31:20.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.824 -07 000000455 INF: FPGA: Recv ZSGSRD 36411
17-03-18 05:31:20.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.834 -07 000000569 INF: FPGA: Recv ZSGSRD 36410
17-03-18 05:31:20.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.844 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.844 -07 000000455 INF: FPGA: Recv ZSGSRD 36410
17-03-18 05:31:20.854 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.854 -07 000000569 INF: FPGA: Recv ZSGSRD 36414
17-03-18 05:31:20.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.864 -07 000000455 INF: FPGA: Recv ZSGSRD 36419
17-03-18 05:31:20.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.874 -07 000000625 INF: FPGA: Recv ZSGSRD 36416
17-03-18 05:31:20.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.884 -07 000000569 INF: FPGA: Recv ZSGSRD 36414
17-03-18 05:31:20.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.894 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:20.894 -07 000000625 INF: FPGA: Recv ZSGSRD 36415
17-03-18 05:31:20.904 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.904 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:20.904 -07 000000569 INF: FPGA: Recv ZPIEZORD 32530
17-03-18 05:31:20.914 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:20.914 -07 000000561 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.808 V. Piezo Error = -8.6 V.
17-03-18 05:31:20.914 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36414 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36414 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36410 (-173.3 uncal um), Max = 36419 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:31:20.914 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36414, posNoise = 5, negNoise = 4
17-03-18 05:31:20.914 -07 000000561 INF: Z Motor: After move to -0.174246, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:20.914 -07 000000561 INF: Z Motor: Settle wait time = 1474 ms, measure time = 106 ms (allowed 150 ms), total time = 1580 ms
17-03-18 05:31:20.914 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:20.964 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 05:31:20.964 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:20.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:20.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:20.964 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:20.964 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:20.964 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:20.964 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:20.964 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:20.964 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:20.974 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:20.974 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:20.974 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:31:20.974 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:31:20.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:21.024 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:21.324 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:21.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:21.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:21.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:31:21.364 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:21.364 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:21.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:31:21.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:31:21.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:21.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:31:21.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:31:21.464 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:21.464 -07 000000455 INF: Autofocus start
17-03-18 05:31:21.464 -07 000000455 INF: MeasureProfile start
17-03-18 05:31:21.464 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:21.474 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:21.474 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:21.474 -07 000000455 INF: MeasureProfile done
17-03-18 05:31:21.474 -07 000000455 INF: X=48  Z correction [um]=0.1739867
17-03-18 05:31:21.474 -07 000000455 INF: Autofocus finished
17-03-18 05:31:21.674 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:21.674 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:21.674 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174254612941218. ----------
17-03-18 05:31:21.674 -07 000000610 INF: Cycle	138	Tile	13	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:21.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36615, sync = True, waitForSettling = True)
17-03-18 05:31:21.684 -07 000000610 INF: Z Motor: Moving to -0.167613 mm, started at -0.174255 mm, distance = 6.64 um
17-03-18 05:31:21.684 -07 000000610 INF: FPGA: Xmit ZDACW 36615\n [Z Motor]
17-03-18 05:31:21.684 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:31:21.694 -07 000000610 INF: FPGA: 'ZDACW 36615' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:21.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:21.694 -07 000000012 INF: FPGA: Recv ZDACR 36615
17-03-18 05:31:21.704 -07 000000610 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:21.774 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:21.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.854 -07 000000437 INF: FPGA: Recv ZSGSRD 35380
17-03-18 05:31:21.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35386
17-03-18 05:31:21.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.874 -07 000000012 INF: FPGA: Recv ZSGSRD 35383
17-03-18 05:31:21.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.884 -07 000000579 INF: FPGA: Recv ZSGSRD 35377
17-03-18 05:31:21.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.894 -07 000000592 INF: FPGA: Recv ZSGSRD 35382
17-03-18 05:31:21.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.904 -07 000000561 INF: FPGA: Recv ZSGSRD 35375
17-03-18 05:31:21.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:21.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.924 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.978563,
17-03-18 05:31:21.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35387
17-03-18 05:31:21.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:21.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.954 -07 000000606 INF: FPGA: Recv ZSGSRD 35381
17-03-18 05:31:21.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:21.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.984 -07 000000444 INF: FPGA: Recv ZSGSRD 35378
17-03-18 05:31:21.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:21.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:21.994 -07 000000444 INF: FPGA: Recv ZSGSRD 35382
17-03-18 05:31:22.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:22.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:22.004 -07 000000569 INF: FPGA: Recv ZPIEZORD 31170
17-03-18 05:31:22.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:22.014 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.3 V.
17-03-18 05:31:22.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35381 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35382 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35375 (-166.7 uncal um), Max = 35387 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:22.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35381, posNoise = 6, negNoise = 6
17-03-18 05:31:22.014 -07 000000610 INF: Z Motor: After move to -0.167613, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:22.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 05:31:22.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:22.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:22.014 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:22.014 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:22.014 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:22.014 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:22.014 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:22.014 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:22.014 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 05:31:22.014 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:22.014 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 05:31:22.014 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:22.024 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:22.024 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:22.024 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:31:22.024 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:22.034 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:31:22.034 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:31:22.034 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:31:22.034 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:31:22.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36792 150\n [Camera]
17-03-18 05:31:22.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:22.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:22.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:22.674 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:22.674 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:22.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) start.
17-03-18 05:31:22.674 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:22.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:22.674 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:22.674 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:22.674 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:22.864 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36792 825
17-03-18 05:31:23.014 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:23.064 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:31:23.064 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:31:23.064 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:23.064 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:31:23.064 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:31:23.064 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:23.064 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:23.064 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:23.064 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:31:23.074 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:31:23.224 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:23.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:23.234 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:23.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:23.234 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:23.234 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:31:23.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:23.234 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:23.234 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:23.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:31:23.424 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:31:23.424 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:23.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36792 150' command took 2 ms to send, 1380 ms to get response, and 1388 ms overall
17-03-18 05:31:23.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:23.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167618401798779. ------
17-03-18 05:31:23.424 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:23.424 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17407 mm
17-03-18 05:31:23.424 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:23.424 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:31:23.424 -07 000000012 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 05:31:23.424 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38025, sync = True, waitForSettling = False)
17-03-18 05:31:23.424 -07 000000444 INF: Z Motor: Moving to -0.174067 mm, started at -0.167618 mm, distance = -6.45 um
17-03-18 05:31:23.424 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:23.434 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:31:23.434 -07 000000444 INF: FPGA: Xmit ZDACW 38025\n [Z Motor]
17-03-18 05:31:23.434 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:31:23.444 -07 000000444 INF: FPGA: 'ZDACW 38025' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:31:23.444 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:23.454 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:23.574 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:31:23.584 -07 000000012 INF: FPGA: 'YRDPOS' command took 126 ms to send, 0 ms to get response, and 151 ms overall
17-03-18 05:31:23.584 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:23.584 -07 000000012 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:23.584 -07 000000012 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:23.584 -07 000000012 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:31:23.584 -07 000000455 INF: FPGA: Recv ZDACR 38025
17-03-18 05:31:23.594 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 149 ms overall
17-03-18 05:31:23.594 -07 000000444 INF: Z Motor: MoveAbsStepped took 161 ms (did NOT wait for settling yet))
17-03-18 05:31:23.594 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:23.634 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:31:23.634 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:31:23.634 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:23.634 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:31:23.634 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:31:23.634 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:23.644 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:23.644 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:23.644 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:31:23.644 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:23.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:31:23.644 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:31:23.964 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 05:31:23.964 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:31:24.024 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:24.024 -07 000000455 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:31:24.034 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:24.034 -07 000000012 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:24.034 -07 000000012 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:31:24.034 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.171 mm/sec
17-03-18 05:31:24.984 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:24.984 -07 000000561 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:31:24.994 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:24.994 -07 000000012 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:25.024 -07 000000012 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:25.024 -07 000000012 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:31:25.024 -07 000000012 INF: Y Motor: Moved to 70.6875 after 1592 ms (table move)
17-03-18 05:31:25.024 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174067 mm (DAC = 38025)
17-03-18 05:31:25.024 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.024 -07 000000501 INF: FPGA: Recv ZSGSRD 36390
17-03-18 05:31:25.034 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:31:25.034 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.034 -07 000000561 INF: FPGA: Recv ZSGSRD 36380
17-03-18 05:31:25.044 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.044 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.044 -07 000000455 INF: FPGA: Recv ZSGSRD 36381
17-03-18 05:31:25.054 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.054 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.054 -07 000000606 INF: FPGA: Recv ZSGSRD 36380
17-03-18 05:31:25.064 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.064 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.064 -07 000000455 INF: FPGA: Recv ZSGSRD 36392
17-03-18 05:31:25.074 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.074 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.074 -07 000000444 INF: FPGA: Recv ZSGSRD 36389
17-03-18 05:31:25.084 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.084 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.084 -07 000000455 INF: FPGA: Recv ZSGSRD 36388
17-03-18 05:31:25.094 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.094 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.094 -07 000000444 INF: FPGA: Recv ZSGSRD 36388
17-03-18 05:31:25.104 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.104 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.104 -07 000000561 INF: FPGA: Recv ZSGSRD 36382
17-03-18 05:31:25.114 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.114 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:25.114 -07 000000444 INF: FPGA: Recv ZSGSRD 36383
17-03-18 05:31:25.124 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.124 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:25.124 -07 000000561 INF: FPGA: Recv ZPIEZORD 32498
17-03-18 05:31:25.134 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.134 -07 000000629 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.6 V.
17-03-18 05:31:25.134 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36385 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36386 (-173.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36380 (-173.2 uncal um), Max = 36392 (-173.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:31:25.134 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36385, posNoise = 7, negNoise = 5
17-03-18 05:31:25.134 -07 000000629 INF: Z Motor: After move to -0.174067, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:25.134 -07 000000629 INF: Z Motor: Settle wait time = 1595 ms, measure time = 106 ms (allowed 150 ms), total time = 1701 ms
17-03-18 05:31:25.134 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:25.184 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1754 ms
17-03-18 05:31:25.184 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:25.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:25.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:25.184 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:25.184 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:25.184 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:25.184 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:25.194 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:25.194 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:25.194 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:25.194 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:25.204 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:31:25.204 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:31:25.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:25.244 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:25.544 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:25.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:25.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:25.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:25.584 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:25.584 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:25.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:31:25.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:31:25.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:25.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:25.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:31:25.684 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:25.684 -07 000000501 INF: Autofocus start
17-03-18 05:31:25.684 -07 000000501 INF: MeasureProfile start
17-03-18 05:31:25.684 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:25.694 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:31:25.694 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:25.694 -07 000000501 INF: MeasureProfile done
17-03-18 05:31:25.694 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 05:31:25.704 -07 000000501 INF: Autofocus finished
17-03-18 05:31:25.894 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:25.894 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:25.894 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.174068310789107. ----------
17-03-18 05:31:25.894 -07 000000610 INF: Cycle	138	Tile	14	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:25.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36505, sync = True, waitForSettling = True)
17-03-18 05:31:25.904 -07 000000610 INF: Z Motor: Moving to -0.167109 mm, started at -0.174068 mm, distance = 6.96 um
17-03-18 05:31:25.904 -07 000000610 INF: FPGA: Xmit ZDACW 36505\n [Z Motor]
17-03-18 05:31:25.904 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:31:25.914 -07 000000610 INF: FPGA: 'ZDACW 36505' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:25.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:25.914 -07 000000444 INF: FPGA: Recv ZDACR 36505
17-03-18 05:31:25.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:25.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:26.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.074 -07 000000561 INF: FPGA: Recv ZSGSRD 35302
17-03-18 05:31:26.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:26.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.084 -07 000000629 INF: FPGA: Recv ZSGSRD 35305
17-03-18 05:31:26.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.094 -07 000000012 INF: FPGA: Recv ZSGSRD 35302
17-03-18 05:31:26.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.104 -07 000000629 INF: FPGA: Recv ZSGSRD 35307
17-03-18 05:31:26.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.114 -07 000000455 INF: FPGA: Recv ZSGSRD 35303
17-03-18 05:31:26.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.124 -07 000000629 INF: FPGA: Recv ZSGSRD 35300
17-03-18 05:31:26.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.134 -07 000000455 INF: FPGA: Recv ZSGSRD 35304
17-03-18 05:31:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.144 -07 000000629 INF: FPGA: Recv ZSGSRD 35301
17-03-18 05:31:26.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.154 -07 000000455 INF: FPGA: Recv ZSGSRD 35304
17-03-18 05:31:26.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:26.164 -07 000000629 INF: FPGA: Recv ZSGSRD 35298
17-03-18 05:31:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:26.174 -07 000000561 INF: FPGA: Recv ZPIEZORD 31043
17-03-18 05:31:26.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:26.184 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.4 V.
17-03-18 05:31:26.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35303 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35298 (-166.2 uncal um), Max = 35307 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:31:26.184 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35303, posNoise = 4, negNoise = 5
17-03-18 05:31:26.184 -07 000000610 INF: Z Motor: After move to -0.167109, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:26.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:31:26.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:26.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:26.184 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:26.184 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:26.184 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:26.184 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:26.184 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:26.184 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:26.184 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:26.184 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:26.184 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:26.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:26.194 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:26.194 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:26.194 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:26.194 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:26.204 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:31:26.204 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:31:26.204 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:31:26.204 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:31:26.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36681 150\n [Camera]
17-03-18 05:31:26.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:26.774 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:26.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:26.854 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:26.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:26.854 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:26.854 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:26.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:26.854 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:26.854 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:26.854 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:26.864 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:26.864 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:27.044 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36681 825
17-03-18 05:31:27.194 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:27.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:31:27.244 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:31:27.244 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:27.244 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:27.244 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:31:27.254 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:31:27.254 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:31:27.254 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:27.254 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:27.264 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:31:27.304 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.999021,
17-03-18 05:31:27.404 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:27.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:27.404 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:27.404 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:27.404 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:31:27.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:27.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:27.404 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:27.404 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:27.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:31:27.594 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:27.594 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:27.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36681 150' command took 2 ms to send, 1377 ms to get response, and 1386 ms overall
17-03-18 05:31:27.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:27.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167117313251722. ------
17-03-18 05:31:27.604 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:27.724 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17384 mm
17-03-18 05:31:27.724 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:27.724 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:27.724 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:31:27.724 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37975, sync = True, waitForSettling = False)
17-03-18 05:31:27.724 -07 000000444 INF: Z Motor: Moving to -0.173838 mm, started at -0.167117 mm, distance = -6.72 um
17-03-18 05:31:27.724 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:31:27.734 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 119 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 05:31:27.734 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:27.734 -07 000000561 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:31:27.744 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:31:27.744 -07 000000501 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:27.744 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:27.744 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:31:27.744 -07 000000444 INF: FPGA: Xmit ZDACW 37975\n [Z Motor]
17-03-18 05:31:27.744 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:31:27.754 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:27.754 -07 000000444 INF: FPGA: 'ZDACW 37975' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:31:27.764 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:27.774 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:27.774 -07 000000581 INF: FPGA: Recv ZDACR 37975
17-03-18 05:31:27.784 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:27.784 -07 000000444 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:31:27.804 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:31:27.804 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:31:27.804 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:27.804 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:31:27.804 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:31:27.814 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:27.814 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:27.814 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:27.814 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:31:27.824 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:31:27.954 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:27.954 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:31:28.144 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 05:31:28.144 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 05:31:28.184 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:28.194 -07 000000561 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:31:28.194 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:31:28.194 -07 000000501 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:28.194 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:31:28.194 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 05:31:29.144 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:29.144 -07 000000606 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:31:29.154 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:29.154 -07 000000501 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:29.184 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:29.184 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:29.184 -07 000000501 INF: Y Motor: Moved to 71.5181 after 1456 ms (table move)
17-03-18 05:31:29.184 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173838 mm (DAC = 37975)
17-03-18 05:31:29.184 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.184 -07 000000561 INF: FPGA: Recv ZSGSRD 36352
17-03-18 05:31:29.194 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:29.194 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.194 -07 000000629 INF: FPGA: Recv ZSGSRD 36354
17-03-18 05:31:29.204 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.204 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.204 -07 000000455 INF: FPGA: Recv ZSGSRD 36349
17-03-18 05:31:29.214 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.214 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.214 -07 000000012 INF: FPGA: Recv ZSGSRD 36351
17-03-18 05:31:29.224 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.224 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.224 -07 000000606 INF: FPGA: Recv ZSGSRD 36350
17-03-18 05:31:29.234 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.234 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.234 -07 000000561 INF: FPGA: Recv ZSGSRD 36349
17-03-18 05:31:29.244 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.244 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.244 -07 000000606 INF: FPGA: Recv ZSGSRD 36347
17-03-18 05:31:29.254 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.254 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.254 -07 000000424 INF: FPGA: Recv ZSGSRD 36344
17-03-18 05:31:29.264 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.264 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.264 -07 000000581 INF: FPGA: Recv ZSGSRD 36350
17-03-18 05:31:29.274 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.274 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:29.274 -07 000000012 INF: FPGA: Recv ZSGSRD 36356
17-03-18 05:31:29.284 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.284 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:29.284 -07 000000455 INF: FPGA: Recv ZPIEZORD 32439
17-03-18 05:31:29.294 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:29.294 -07 000000502 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.795 V. Piezo Error = -8.6 V.
17-03-18 05:31:29.294 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36350 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36350 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36344 (-172.9 uncal um), Max = 36356 (-173.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:29.294 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36350, posNoise = 6, negNoise = 6
17-03-18 05:31:29.294 -07 000000502 INF: Z Motor: After move to -0.173838, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:29.294 -07 000000502 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:31:29.294 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:29.344 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 05:31:29.344 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:29.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:29.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:29.344 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:29.344 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:29.344 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:29.344 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:29.344 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:29.344 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:29.354 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:29.354 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:29.354 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:31:29.354 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:31:29.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:29.404 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:29.704 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:29.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:29.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:29.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:29.744 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:29.744 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:29.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:31:29.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:31:29.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:29.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:29.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:31:29.844 -07 000000561 INF: Autofocus start
17-03-18 05:31:29.844 -07 000000561 INF: MeasureProfile start
17-03-18 05:31:29.844 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:29.844 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:29.854 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:29.854 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:29.854 -07 000000561 INF: MeasureProfile done
17-03-18 05:31:29.854 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:31:29.854 -07 000000561 INF: Autofocus finished
17-03-18 05:31:30.054 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:30.054 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:31:30.054 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173843463364146. ----------
17-03-18 05:31:30.064 -07 000000610 INF: Cycle	138	Tile	15	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:30.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36490, sync = True, waitForSettling = True)
17-03-18 05:31:30.064 -07 000000610 INF: Z Motor: Moving to -0.167041 mm, started at -0.173843 mm, distance = 6.80 um
17-03-18 05:31:30.064 -07 000000610 INF: FPGA: Xmit ZDACW 36490\n [Z Motor]
17-03-18 05:31:30.064 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:31:30.074 -07 000000610 INF: FPGA: 'ZDACW 36490' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:30.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:30.074 -07 000000455 INF: FPGA: Recv ZDACR 36490
17-03-18 05:31:30.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:30.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.234 -07 000000561 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:31:30.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:30.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.244 -07 000000444 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:31:30.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35288
17-03-18 05:31:30.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.264 -07 000000581 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:31:30.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.274 -07 000000629 INF: FPGA: Recv ZSGSRD 35295
17-03-18 05:31:30.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35295
17-03-18 05:31:30.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.294 -07 000000501 INF: FPGA: Recv ZSGSRD 35292
17-03-18 05:31:30.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35293
17-03-18 05:31:30.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.314 -07 000000629 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:31:30.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:30.324 -07 000000606 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:31:30.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:30.334 -07 000000629 INF: FPGA: Recv ZPIEZORD 31000
17-03-18 05:31:30.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:30.344 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.5 V.
17-03-18 05:31:30.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35293 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35293 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35288 (-166.2 uncal um), Max = 35296 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:31:30.344 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35293, posNoise = 3, negNoise = 5
17-03-18 05:31:30.344 -07 000000610 INF: Z Motor: After move to -0.167041, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:30.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:31:30.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:30.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:30.344 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:30.344 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:30.344 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:30.344 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:30.344 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:30.344 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:30.344 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:31:30.344 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:30.344 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:30.344 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:30.354 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:30.354 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:30.354 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:30.354 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:30.364 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:31:30.364 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:30.364 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:31:30.364 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:30.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36666 150\n [Camera]
17-03-18 05:31:30.564 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:31.004 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:31.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:31.004 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:31.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:31.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:31.004 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:31.004 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:31.004 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:31:31.004 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:31.004 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:31.194 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36666 825
17-03-18 05:31:31.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:31.404 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:31:31.404 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:31:31.404 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:31.404 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:31:31.404 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:31:31.404 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:31.404 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:31.404 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:31:31.414 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:31.414 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:31:31.554 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:31.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:31.554 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:31.564 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:31.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:31:31.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:31.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:31.564 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:31.564 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:31.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:31:31.744 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:31:31.754 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:31.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36666 150' command took 2 ms to send, 1380 ms to get response, and 1387 ms overall
17-03-18 05:31:31.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:31.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.167053071130304. ------
17-03-18 05:31:31.754 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:31.754 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17337 mm
17-03-18 05:31:31.754 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:31.764 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:31:31.764 -07 000000629 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:31:31.764 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:31.764 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:31.764 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:31.764 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37873, sync = True, waitForSettling = False)
17-03-18 05:31:31.764 -07 000000467 INF: Z Motor: Moving to -0.173371 mm, started at -0.167053 mm, distance = -6.32 um
17-03-18 05:31:31.764 -07 000000444 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:31:31.774 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:31.774 -07 000000629 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:31.774 -07 000000629 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:31.774 -07 000000629 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:31:31.774 -07 000000467 INF: FPGA: Xmit ZDACW 37873\n [Z Motor]
17-03-18 05:31:31.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:31.774 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:31:31.784 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:31.784 -07 000000467 INF: FPGA: 'ZDACW 37873' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:31:31.794 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:31.804 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:31.804 -07 000000585 INF: FPGA: Recv ZDACR 37873
17-03-18 05:31:31.814 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:31.814 -07 000000467 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:31:31.964 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:31:31.964 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:31:31.964 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:31.964 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:31:31.964 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:31:31.964 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:31.964 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:31.974 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:31.974 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:31:31.974 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:31:31.984 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:31.984 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:31:32.164 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 05:31:32.164 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:31:32.214 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:32.224 -07 000000585 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:31:32.224 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:31:32.224 -07 000000629 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:32.224 -07 000000629 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:31:32.224 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-18 05:31:32.664 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.003063,
17-03-18 05:31:33.174 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:33.174 -07 000000569 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:31:33.184 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.184 -07 000000629 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:33.214 -07 000000629 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:33.214 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:33.214 -07 000000629 INF: Y Motor: Moved to 72.3486 after 1452 ms (table move)
17-03-18 05:31:33.214 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173371 mm (DAC = 37873)
17-03-18 05:31:33.214 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.214 -07 000000629 INF: FPGA: Recv ZSGSRD 36280
17-03-18 05:31:33.224 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:33.224 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.224 -07 000000569 INF: FPGA: Recv ZSGSRD 36284
17-03-18 05:31:33.234 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.234 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.234 -07 000000382 INF: FPGA: Recv ZSGSRD 36277
17-03-18 05:31:33.244 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.244 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.244 -07 000000585 INF: FPGA: Recv ZSGSRD 36278
17-03-18 05:31:33.254 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.254 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.254 -07 000000501 INF: FPGA: Recv ZSGSRD 36273
17-03-18 05:31:33.264 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.264 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.264 -07 000000585 INF: FPGA: Recv ZSGSRD 36276
17-03-18 05:31:33.274 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.274 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.274 -07 000000501 INF: FPGA: Recv ZSGSRD 36281
17-03-18 05:31:33.284 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.284 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.284 -07 000000455 INF: FPGA: Recv ZSGSRD 36278
17-03-18 05:31:33.294 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.294 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.294 -07 000000585 INF: FPGA: Recv ZSGSRD 36278
17-03-18 05:31:33.304 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.304 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:33.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36280
17-03-18 05:31:33.314 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.314 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:33.314 -07 000000501 INF: FPGA: Recv ZPIEZORD 32363
17-03-18 05:31:33.324 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:33.324 -07 000000581 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.7 V.
17-03-18 05:31:33.324 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36278 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36278 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36273 (-172.5 uncal um), Max = 36284 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:31:33.324 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36278, posNoise = 6, negNoise = 5
17-03-18 05:31:33.324 -07 000000581 INF: Z Motor: After move to -0.173371, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:33.324 -07 000000581 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:31:33.324 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:33.374 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:31:33.374 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:33.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:33.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:33.374 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:33.374 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:33.374 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:33.374 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:33.374 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:33.374 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:33.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:33.384 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:33.384 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:31:33.394 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:31:33.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:33.434 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:33.734 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:33.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:33.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:33.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:31:33.774 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:33.774 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:33.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:31:33.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:31:33.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:33.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:31:33.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:31:33.874 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:33.874 -07 000000569 INF: Autofocus start
17-03-18 05:31:33.874 -07 000000569 INF: MeasureProfile start
17-03-18 05:31:33.874 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:33.884 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:33.884 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:33.894 -07 000000569 INF: MeasureProfile done
17-03-18 05:31:33.894 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:31:33.894 -07 000000569 INF: Autofocus finished
17-03-18 05:31:34.084 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:34.084 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:34.084 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173380920089939. ----------
17-03-18 05:31:34.084 -07 000000610 INF: Cycle	138	Tile	16	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:34.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36406, sync = True, waitForSettling = True)
17-03-18 05:31:34.094 -07 000000610 INF: Z Motor: Moving to -0.166656 mm, started at -0.173381 mm, distance = 6.72 um
17-03-18 05:31:34.094 -07 000000610 INF: FPGA: Xmit ZDACW 36406\n [Z Motor]
17-03-18 05:31:34.094 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:31:34.104 -07 000000610 INF: FPGA: 'ZDACW 36406' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:34.104 -07 000000455 INF: FPGA: Recv ZDACR 36406
17-03-18 05:31:34.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:34.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:34.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.264 -07 000000455 INF: FPGA: Recv ZSGSRD 35234
17-03-18 05:31:34.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:34.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.274 -07 000000444 INF: FPGA: Recv ZSGSRD 35229
17-03-18 05:31:34.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.284 -07 000000561 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:31:34.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.294 -07 000000585 INF: FPGA: Recv ZSGSRD 35222
17-03-18 05:31:34.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.304 -07 000000455 INF: FPGA: Recv ZSGSRD 35232
17-03-18 05:31:34.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.314 -07 000000444 INF: FPGA: Recv ZSGSRD 35240
17-03-18 05:31:34.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.324 -07 000000455 INF: FPGA: Recv ZSGSRD 35225
17-03-18 05:31:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.334 -07 000000585 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:31:34.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.434 -07 000000581 INF: FPGA: Recv ZSGSRD 35241
17-03-18 05:31:34.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 2 ms to get response, and 9 ms overall
17-03-18 05:31:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:34.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35236
17-03-18 05:31:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:31:34.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:34.444 -07 000000561 INF: FPGA: Recv ZPIEZORD 30960
17-03-18 05:31:34.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:34.454 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.555 V. Piezo Error = -9.4 V.
17-03-18 05:31:34.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35233 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35222 (-165.7 uncal um), Max = 35241 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:31:34.454 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35233, posNoise = 8, negNoise = 11
17-03-18 05:31:34.454 -07 000000610 INF: Z Motor: After move to -0.166656, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:34.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 360 ms)
17-03-18 05:31:34.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:34.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:34.454 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:34.454 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:34.454 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:34.454 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:34.454 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:34.454 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:34.454 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:34.454 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:34.454 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:31:34.454 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:34.464 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:31:34.464 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:34.464 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:31:34.464 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:34.474 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:31:34.474 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:31:34.474 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:31:34.474 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:31:34.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36582 150\n [Camera]
17-03-18 05:31:34.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:35.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:35.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:35.114 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:35.114 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:35.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) start.
17-03-18 05:31:35.124 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:35.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:35.124 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:35.124 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:35.124 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:35.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36582 825
17-03-18 05:31:35.464 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:35.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:31:35.504 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:31:35.504 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:35.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:35.514 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:31:35.514 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:31:35.514 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:35.514 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:35.514 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:31:35.514 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:31:35.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:35.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:35.674 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:35.674 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:35.674 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:31:35.674 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:35.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:35.674 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:35.674 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:35.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 05:31:35.864 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:35.864 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:35.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36582 150' command took 2 ms to send, 1374 ms to get response, and 1387 ms overall
17-03-18 05:31:35.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:35.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166667618401799. ------
17-03-18 05:31:35.874 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:35.874 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17318 mm
17-03-18 05:31:35.874 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:35.874 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:31:35.874 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37831, sync = True, waitForSettling = False)
17-03-18 05:31:35.874 -07 000000569 INF: Z Motor: Moving to -0.173179 mm, started at -0.166668 mm, distance = -6.51 um
17-03-18 05:31:35.874 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:31:35.884 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:35.894 -07 000000569 INF: FPGA: Xmit ZDACW 37831\n [Z Motor]
17-03-18 05:31:36.074 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:31:36.074 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:31:36.074 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:36.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:31:36.084 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:31:36.084 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:36.084 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:36.084 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:36.084 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:31:36.094 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:31:36.224 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:36.224 -07 000000455 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:31:36.224 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:31:36.224 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 330 ms to get response, and 345 ms overall
17-03-18 05:31:36.224 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 340 ms to get response, and 350 ms overall
17-03-18 05:31:36.224 -07 000000569 INF: FPGA: 'ZDACW 37831' command took 0 ms to send, 320 ms to get response, and 346 ms overall
17-03-18 05:31:36.224 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:36.224 -07 000000501 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:36.224 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:36.224 -07 000000501 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:31:36.224 -07 000000382 INF: FPGA: Recv ZDACR 37831
17-03-18 05:31:36.234 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:36.234 -07 000000569 INF: Z Motor: MoveAbsStepped took 356 ms (did NOT wait for settling yet))
17-03-18 05:31:36.234 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:36.244 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:36.444 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:36.444 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 05:31:36.604 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:31:36.604 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:31:36.654 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:36.664 -07 000000455 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:31:36.664 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:31:36.664 -07 000000501 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:36.664 -07 000000501 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:31:36.664 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-18 05:31:36.774 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:37.614 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:37.614 -07 000000569 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:31:37.624 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:37.624 -07 000000501 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:37.654 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:37.654 -07 000000501 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:31:37.654 -07 000000501 INF: Y Motor: Moved to 73.1748 after 1777 ms (table move)
17-03-18 05:31:37.654 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173179 mm (DAC = 37831)
17-03-18 05:31:37.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.654 -07 000000455 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:31:37.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:31:37.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.664 -07 000000501 INF: FPGA: Recv ZSGSRD 36254
17-03-18 05:31:37.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:37.674 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.674 -07 000000382 INF: FPGA: Recv ZSGSRD 36249
17-03-18 05:31:37.684 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:37.694 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.694 -07 000000606 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:31:37.704 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:37.724 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.724 -07 000000501 INF: FPGA: Recv ZSGSRD 36245
17-03-18 05:31:37.734 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:37.734 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.734 -07 000000501 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:31:37.744 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:37.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.754 -07 000000569 INF: FPGA: Recv ZSGSRD 36245
17-03-18 05:31:37.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:37.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.764 -07 000000382 INF: FPGA: Recv ZSGSRD 36249
17-03-18 05:31:37.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:37.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.784 -07 000000455 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:31:37.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:37.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:37.804 -07 000000501 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:31:37.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:37.814 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:37.814 -07 000000382 INF: FPGA: Recv ZPIEZORD 32323
17-03-18 05:31:37.824 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:37.824 -07 000000467 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.7 V.
17-03-18 05:31:37.824 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36248 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36248 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36245 (-172.3 uncal um), Max = 36254 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:31:37.824 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36248, posNoise = 6, negNoise = 3
17-03-18 05:31:37.824 -07 000000467 INF: Z Motor: After move to -0.173179, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:37.824 -07 000000467 INF: Z Motor: Settle wait time = 1780 ms, measure time = 166 ms (allowed 150 ms), total time = 1946 ms
17-03-18 05:31:37.824 -07 000000467 INF: Z Motor: Warning: Actual position measuring time = 166 ms, longer than max expected time of 150 ms
17-03-18 05:31:37.824 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1950 ms
17-03-18 05:31:37.824 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:37.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:37.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:37.824 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:37.824 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:37.824 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:37.824 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:37.834 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:31:37.834 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:37.834 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:37.834 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:37.834 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:31:37.844 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:31:37.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:37.884 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:38.024 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.979922,
17-03-18 05:31:38.184 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:38.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:38.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:38.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:31:38.224 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:38.224 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:38.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 05:31:38.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:31:38.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:38.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:38.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:31:38.324 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:38.324 -07 000000606 INF: Autofocus start
17-03-18 05:31:38.324 -07 000000606 INF: MeasureProfile start
17-03-18 05:31:38.324 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:38.334 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:31:38.334 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:38.334 -07 000000606 INF: MeasureProfile done
17-03-18 05:31:38.334 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:31:38.334 -07 000000606 INF: Autofocus finished
17-03-18 05:31:38.534 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:38.534 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:38.534 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173188193725686. ----------
17-03-18 05:31:38.534 -07 000000610 INF: Cycle	138	Tile	17	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:38.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36346, sync = True, waitForSettling = True)
17-03-18 05:31:38.544 -07 000000610 INF: Z Motor: Moving to -0.166381 mm, started at -0.173188 mm, distance = 6.81 um
17-03-18 05:31:38.544 -07 000000610 INF: FPGA: Xmit ZDACW 36346\n [Z Motor]
17-03-18 05:31:38.544 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:31:38.554 -07 000000610 INF: FPGA: 'ZDACW 36346' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:31:38.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:38.554 -07 000000455 INF: FPGA: Recv ZDACR 36346
17-03-18 05:31:38.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:38.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.714 -07 000000467 INF: FPGA: Recv ZSGSRD 35187
17-03-18 05:31:38.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:38.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.724 -07 000000455 INF: FPGA: Recv ZSGSRD 35198
17-03-18 05:31:38.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.734 -07 000000382 INF: FPGA: Recv ZSGSRD 35188
17-03-18 05:31:38.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35186
17-03-18 05:31:38.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.754 -07 000000625 INF: FPGA: Recv ZSGSRD 35186
17-03-18 05:31:38.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.764 -07 000000606 INF: FPGA: Recv ZSGSRD 35192
17-03-18 05:31:38.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.774 -07 000000625 INF: FPGA: Recv ZSGSRD 35195
17-03-18 05:31:38.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.784 -07 000000569 INF: FPGA: Recv ZSGSRD 35184
17-03-18 05:31:38.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.794 -07 000000382 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:31:38.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:38.804 -07 000000569 INF: FPGA: Recv ZSGSRD 35194
17-03-18 05:31:38.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:38.814 -07 000000382 INF: FPGA: Recv ZPIEZORD 30920
17-03-18 05:31:38.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:38.824 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.4 V.
17-03-18 05:31:38.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35190 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35190 (-165.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35184 (-165.5 uncal um), Max = 35198 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:38.824 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35190, posNoise = 8, negNoise = 6
17-03-18 05:31:38.824 -07 000000610 INF: Z Motor: After move to -0.166381, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:38.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:31:38.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:38.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:38.824 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:38.824 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:38.824 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:38.824 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:38.824 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:38.824 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:38.834 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:38.834 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:38.834 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:38.834 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:38.834 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:38.834 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:38.834 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:31:38.834 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:38.854 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:31:38.854 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:31:38.854 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:31:38.854 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:31:38.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36522 150\n [Camera]
17-03-18 05:31:39.054 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:39.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:39.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:39.494 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:39.494 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:39.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:39.494 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:39.494 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:39.494 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:31:39.504 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:39.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:31:39.684 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36522 825
17-03-18 05:31:39.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:39.894 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:31:39.894 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:31:39.894 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:39.894 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:39.894 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:31:39.904 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:31:39.904 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:31:39.904 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:39.904 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:39.914 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:31:40.044 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:40.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:40.044 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:40.054 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:40.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:40.054 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:40.054 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:40.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:31:40.164 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:40.164 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:31:40.234 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:40.234 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:40.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36522 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-18 05:31:40.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:40.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166391377279703. ------
17-03-18 05:31:40.244 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:40.244 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17217 mm
17-03-18 05:31:40.244 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:40.244 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:31:40.244 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:40.244 -07 000000455 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:31:40.244 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37611, sync = True, waitForSettling = False)
17-03-18 05:31:40.244 -07 000000501 INF: Z Motor: Moving to -0.172172 mm, started at -0.166391 mm, distance = -5.78 um
17-03-18 05:31:40.254 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:31:40.254 -07 000000501 INF: FPGA: Xmit ZDACW 37611\n [Z Motor]
17-03-18 05:31:40.254 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:31:40.264 -07 000000501 INF: FPGA: 'ZDACW 37611' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:31:40.264 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:40.264 -07 000000569 INF: FPGA: Recv ZDACR 37611
17-03-18 05:31:40.274 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:40.274 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:40.274 -07 000000501 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 05:31:40.274 -07 000000569 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:31:40.284 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 05:31:40.284 -07 000000455 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:40.284 -07 000000455 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:40.284 -07 000000455 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:31:40.284 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:40.294 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:40.444 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:31:40.444 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:31:40.444 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:40.444 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:31:40.454 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:31:40.484 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:40.484 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 233 ms overall
17-03-18 05:31:40.564 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:31:40.564 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:31:40.564 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:40.574 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:31:40.574 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 05:31:40.664 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:31:40.664 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:31:40.704 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:40.714 -07 000000012 INF: FPGA: Recv YRDPOS 151565
17-03-18 05:31:40.714 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:31:40.714 -07 000000455 INF: Y Motor: Encoder = 151565 = motor step 118410.2 = 74.0063 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:40.714 -07 000000455 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:31:40.714 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.848 mm, average velocity = 2.185 mm/sec
17-03-18 05:31:41.664 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:41.664 -07 000000382 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:31:41.674 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:41.674 -07 000000455 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:41.694 -07 000000455 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:41.694 -07 000000455 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:41.694 -07 000000455 INF: Y Motor: Moved to 74.0068 after 1447 ms (table move)
17-03-18 05:31:41.694 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172172 mm (DAC = 37611)
17-03-18 05:31:41.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.704 -07 000000012 INF: FPGA: Recv ZSGSRD 36085
17-03-18 05:31:41.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:31:41.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.704 -07 000000012 INF: FPGA: Recv ZSGSRD 36091
17-03-18 05:31:41.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:41.714 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.714 -07 000000012 INF: FPGA: Recv ZSGSRD 36089
17-03-18 05:31:41.724 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.724 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.724 -07 000000012 INF: FPGA: Recv ZSGSRD 36089
17-03-18 05:31:41.734 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.734 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.734 -07 000000012 INF: FPGA: Recv ZSGSRD 36082
17-03-18 05:31:41.744 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.744 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.744 -07 000000012 INF: FPGA: Recv ZSGSRD 36090
17-03-18 05:31:41.754 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.754 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.754 -07 000000012 INF: FPGA: Recv ZSGSRD 36097
17-03-18 05:31:41.764 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.764 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.764 -07 000000569 INF: FPGA: Recv ZSGSRD 36088
17-03-18 05:31:41.774 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.774 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.774 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:41.774 -07 000000569 INF: FPGA: Recv ZSGSRD 36092
17-03-18 05:31:41.784 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.784 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:41.784 -07 000000382 INF: FPGA: Recv ZSGSRD 36097
17-03-18 05:31:41.794 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.794 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:41.794 -07 000000382 INF: FPGA: Recv ZPIEZORD 32134
17-03-18 05:31:41.804 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:41.804 -07 000000606 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-18 05:31:41.804 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36090 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36090 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36082 (-171.2 uncal um), Max = 36097 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:31:41.804 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36090, posNoise = 7, negNoise = 8
17-03-18 05:31:41.804 -07 000000606 INF: Z Motor: After move to -0.172172, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:41.804 -07 000000606 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-18 05:31:41.804 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:41.854 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 05:31:41.854 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:41.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:41.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:41.854 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:41.854 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:41.854 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:41.854 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:41.854 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:41.854 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:41.864 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:41.864 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:41.864 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:31:41.864 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:31:41.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:41.914 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:42.214 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:42.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:42.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:42.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-18 05:31:42.254 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:42.254 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:42.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:31:42.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:31:42.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:42.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:42.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:31:42.354 -07 000000455 INF: Autofocus start
17-03-18 05:31:42.354 -07 000000455 INF: MeasureProfile start
17-03-18 05:31:42.354 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:42.354 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:42.364 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:42.364 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:42.364 -07 000000455 INF: MeasureProfile done
17-03-18 05:31:42.364 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:31:42.364 -07 000000455 INF: Autofocus finished
17-03-18 05:31:42.564 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:42.564 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:42.564 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172173168207288. ----------
17-03-18 05:31:42.564 -07 000000610 INF: Cycle	138	Tile	18	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:42.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36126, sync = True, waitForSettling = True)
17-03-18 05:31:42.574 -07 000000610 INF: Z Motor: Moving to -0.165374 mm, started at -0.172173 mm, distance = 6.80 um
17-03-18 05:31:42.574 -07 000000610 INF: FPGA: Xmit ZDACW 36126\n [Z Motor]
17-03-18 05:31:42.574 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:31:42.584 -07 000000610 INF: FPGA: 'ZDACW 36126' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:42.584 -07 000000382 INF: FPGA: Recv ZDACR 36126
17-03-18 05:31:42.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:42.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35028
17-03-18 05:31:42.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:42.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:31:42.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.764 -07 000000012 INF: FPGA: Recv ZSGSRD 35031
17-03-18 05:31:42.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.774 -07 000000382 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:31:42.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.784 -07 000000012 INF: FPGA: Recv ZSGSRD 35035
17-03-18 05:31:42.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.794 -07 000000455 INF: FPGA: Recv ZSGSRD 35032
17-03-18 05:31:42.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.814 -07 000000581 INF: FPGA: Recv ZSGSRD 35038
17-03-18 05:31:42.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:42.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.824 -07 000000561 INF: FPGA: Recv ZSGSRD 35030
17-03-18 05:31:42.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.834 -07 000000455 INF: FPGA: Recv ZSGSRD 35026
17-03-18 05:31:42.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:42.844 -07 000000606 INF: FPGA: Recv ZSGSRD 35037
17-03-18 05:31:42.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:42.854 -07 000000581 INF: FPGA: Recv ZPIEZORD 30764
17-03-18 05:31:42.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:42.864 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.512 V. Piezo Error = -9.4 V.
17-03-18 05:31:42.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35032 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35030 (-164.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35026 (-164.5 uncal um), Max = 35038 (-164.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:42.864 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35032, posNoise = 6, negNoise = 6
17-03-18 05:31:42.864 -07 000000610 INF: Z Motor: After move to -0.165374, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:42.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 05:31:42.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:42.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:42.864 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:42.864 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:42.864 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:42.864 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:42.864 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:42.864 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:42.864 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:31:42.864 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:42.864 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:42.864 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:42.874 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:42.874 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:42.874 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:42.874 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:42.884 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:31:42.884 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:31:42.884 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 05:31:42.884 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:31:42.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36302 150\n [Camera]
17-03-18 05:31:43.084 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:43.434 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.99219,
17-03-18 05:31:43.524 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:43.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:43.524 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:43.524 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:43.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:43.524 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:43.524 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:43.524 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:31:43.524 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:43.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:31:43.714 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36302 825
17-03-18 05:31:43.864 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:43.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:31:43.924 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:31:43.924 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:43.924 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:43.924 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:31:43.924 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:31:43.934 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:31:43.934 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:43.934 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:43.944 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:31:44.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:44.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:44.074 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:44.084 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:44.084 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:31:44.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:44.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:44.084 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:44.084 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:44.084 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:31:44.274 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:44.274 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:44.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36302 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-18 05:31:44.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:31:44.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165376351761305. ------
17-03-18 05:31:44.274 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:44.274 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17172 mm
17-03-18 05:31:44.274 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:44.274 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:31:44.274 -07 000000012 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:31:44.274 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37512, sync = True, waitForSettling = False)
17-03-18 05:31:44.274 -07 000000591 INF: Z Motor: Moving to -0.171719 mm, started at -0.165376 mm, distance = -6.34 um
17-03-18 05:31:44.274 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:44.284 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:31:44.284 -07 000000591 INF: FPGA: Xmit ZDACW 37512\n [Z Motor]
17-03-18 05:31:44.284 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:31:44.294 -07 000000591 INF: FPGA: 'ZDACW 37512' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:31:44.294 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:44.294 -07 000000444 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:31:44.304 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:44.304 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:31:44.304 -07 000000012 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:44.304 -07 000000012 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:44.304 -07 000000012 INF: Y Motor: Moving 1353 steps-33
17-03-18 05:31:44.314 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:44.314 -07 000000455 INF: FPGA: Recv ZDACR 37512
17-03-18 05:31:44.324 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:44.324 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:31:44.324 -07 000000591 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:31:44.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:31:44.474 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:31:44.474 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:44.474 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:31:44.474 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:31:44.474 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:44.484 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:44.484 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:44.484 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:31:44.484 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:31:44.504 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:44.504 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:31:44.694 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:31:44.694 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:31:44.734 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:44.734 -07 000000569 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:31:44.744 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:44.744 -07 000000012 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:44.744 -07 000000012 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:31:44.744 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 05:31:45.694 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:45.694 -07 000000455 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:31:45.704 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:45.704 -07 000000012 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:45.714 -07 000000012 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:45.724 -07 000000012 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:31:45.724 -07 000000012 INF: Y Motor: Moved to 74.8306 after 1441 ms (table move)
17-03-18 05:31:45.724 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171719 mm (DAC = 37512)
17-03-18 05:31:45.724 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.724 -07 000000012 INF: FPGA: Recv ZSGSRD 36024
17-03-18 05:31:45.734 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:45.734 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.734 -07 000000012 INF: FPGA: Recv ZSGSRD 36014
17-03-18 05:31:45.744 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.744 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.744 -07 000000012 INF: FPGA: Recv ZSGSRD 36018
17-03-18 05:31:45.754 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.754 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.754 -07 000000625 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:31:45.764 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.764 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.764 -07 000000444 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:31:45.774 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.774 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.774 -07 000000444 INF: FPGA: Recv ZSGSRD 36020
17-03-18 05:31:45.784 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:45.784 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.784 -07 000000444 INF: FPGA: Recv ZSGSRD 36025
17-03-18 05:31:45.794 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.794 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.794 -07 000000444 INF: FPGA: Recv ZSGSRD 36016
17-03-18 05:31:45.804 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.804 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.804 -07 000000444 INF: FPGA: Recv ZSGSRD 36024
17-03-18 05:31:45.814 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.814 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:45.814 -07 000000591 INF: FPGA: Recv ZSGSRD 36016
17-03-18 05:31:45.824 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.824 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:45.824 -07 000000561 INF: FPGA: Recv ZPIEZORD 32060
17-03-18 05:31:45.834 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:45.834 -07 000000382 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.8 V.
17-03-18 05:31:45.834 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36020 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36022 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36014 (-170.8 uncal um), Max = 36025 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:31:45.834 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36020, posNoise = 5, negNoise = 6
17-03-18 05:31:45.834 -07 000000382 INF: Z Motor: After move to -0.171719, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:45.834 -07 000000382 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:31:45.834 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:45.884 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 05:31:45.884 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:45.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:45.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:45.884 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:45.884 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:45.884 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:45.884 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:45.884 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:31:45.884 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:45.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:45.894 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:45.904 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:31:45.904 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:31:45.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:45.954 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:46.254 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:46.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:46.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:46.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:31:46.294 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:46.294 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:46.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:31:46.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:31:46.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:46.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:31:46.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:31:46.394 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:46.394 -07 000000455 INF: Autofocus start
17-03-18 05:31:46.394 -07 000000455 INF: MeasureProfile start
17-03-18 05:31:46.394 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:46.404 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:46.404 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:46.404 -07 000000455 INF: MeasureProfile done
17-03-18 05:31:46.414 -07 000000455 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:31:46.414 -07 000000455 INF: Autofocus finished
17-03-18 05:31:46.604 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:46.604 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:46.604 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171723473357365. ----------
17-03-18 05:31:46.604 -07 000000610 INF: Cycle	138	Tile	19	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:46.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36044, sync = True, waitForSettling = True)
17-03-18 05:31:46.614 -07 000000610 INF: Z Motor: Moving to -0.164999 mm, started at -0.171723 mm, distance = 6.72 um
17-03-18 05:31:46.614 -07 000000610 INF: FPGA: Xmit ZDACW 36044\n [Z Motor]
17-03-18 05:31:46.614 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:31:46.624 -07 000000610 INF: FPGA: 'ZDACW 36044' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:46.624 -07 000000591 INF: FPGA: Recv ZDACR 36044
17-03-18 05:31:46.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:46.774 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:46.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:46.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.784 -07 000000012 INF: FPGA: Recv ZSGSRD 34977
17-03-18 05:31:46.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:46.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.794 -07 000000012 INF: FPGA: Recv ZSGSRD 34967
17-03-18 05:31:46.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.804 -07 000000455 INF: FPGA: Recv ZSGSRD 34980
17-03-18 05:31:46.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.814 -07 000000455 INF: FPGA: Recv ZSGSRD 34973
17-03-18 05:31:46.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.824 -07 000000455 INF: FPGA: Recv ZSGSRD 34976
17-03-18 05:31:46.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.834 -07 000000455 INF: FPGA: Recv ZSGSRD 34978
17-03-18 05:31:46.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.844 -07 000000561 INF: FPGA: Recv ZSGSRD 34974
17-03-18 05:31:46.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.854 -07 000000455 INF: FPGA: Recv ZSGSRD 34978
17-03-18 05:31:46.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.864 -07 000000561 INF: FPGA: Recv ZSGSRD 34975
17-03-18 05:31:46.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:46.874 -07 000000455 INF: FPGA: Recv ZSGSRD 34982
17-03-18 05:31:46.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:46.884 -07 000000012 INF: FPGA: Recv ZPIEZORD 30699
17-03-18 05:31:46.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:46.894 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.500 V. Piezo Error = -9.4 V.
17-03-18 05:31:46.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34976 (-164.2 uncal um), Error = 0.8 uncal um, Median = 34976 (-164.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 34967 (-164.1 uncal um), Max = 34982 (-164.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:31:46.894 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34976, posNoise = 6, negNoise = 9
17-03-18 05:31:46.894 -07 000000610 INF: Z Motor: After move to -0.164999, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:46.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:31:46.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:46.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:46.894 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:46.894 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:46.894 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:46.894 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:46.894 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:46.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:46.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:46.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:46.894 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:31:46.894 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:46.904 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:31:46.904 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:46.904 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:46.904 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:46.914 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:31:46.914 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:31:46.914 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:31:46.914 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:31:46.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36221 150\n [Camera]
17-03-18 05:31:47.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:47.564 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:47.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:47.564 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:47.564 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:47.564 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:31:47.564 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:47.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:47.564 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:47.564 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:47.564 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:31:47.754 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36221 825
17-03-18 05:31:47.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:47.934 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:31:47.944 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:31:47.944 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:47.944 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:31:47.944 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:31:47.944 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:47.944 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:31:47.944 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 05:31:47.944 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:31:47.954 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:31:48.114 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:48.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:48.114 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:48.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:48.114 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:48.114 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:48.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:31:48.124 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:48.124 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:48.124 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:31:48.304 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:31:48.304 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:48.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36221 150' command took 3 ms to send, 1378 ms to get response, and 1387 ms overall
17-03-18 05:31:48.514 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:31:48.514 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:31:48.514 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:48.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:31:48.514 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:31:48.514 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:48.524 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:48.524 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:48.524 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:31:48.524 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:31:48.524 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:31:48.564 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:31:48.564 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:31:48.614 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:31:48.614 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:31:48.614 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:31:48.614 -07 000000585 INF: FPGA: Recv EMCUR 
17-03-18 05:31:48.624 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:48.624 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:31:48.814 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.986717,
17-03-18 05:31:49.124 -07 000000437 INF: FPGA: Recv EMIN
17-03-18 05:31:49.124 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:31:49.124 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:31:49.124 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 05:31:49.134 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:49.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:31:49.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.165016595881366. ------
17-03-18 05:31:49.134 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:49.134 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13939 mm
17-03-18 05:31:49.134 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:49.134 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:49.134 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30450, sync = True, waitForSettling = False)
17-03-18 05:31:49.134 -07 000000012 INF: Z Motor: Moving to -0.139391 mm, started at -0.165017 mm, distance = 25.63 um
17-03-18 05:31:49.134 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:31:49.134 -07 000000585 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 05:31:49.144 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:31:49.144 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:49.144 -07 000000579 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:31:49.154 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:49.154 -07 000000585 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:49.154 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:49.154 -07 000000585 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:31:49.154 -07 000000585 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:31:49.164 -07 000000012 INF: FPGA: Xmit ZDACW 30450\n [Z Motor]
17-03-18 05:31:49.164 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:31:49.174 -07 000000012 INF: FPGA: 'ZDACW 30450' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:31:49.174 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:49.174 -07 000000382 INF: FPGA: Recv ZDACR 30450
17-03-18 05:31:49.184 -07 000000585 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:31:49.184 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:49.184 -07 000000012 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:31:49.354 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:49.354 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 05:31:50.804 -07 000000382 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 05:31:50.804 -07 000000585 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1649 ms overall
17-03-18 05:31:50.804 -07 000000585 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:31:50.804 -07 000000585 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:31:50.804 -07 000000585 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1649 ms, distance = 14.918 mm, average velocity = 9.047 mm/sec
17-03-18 05:31:51.774 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:53.654 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:53.654 -07 000000579 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:31:53.664 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:53.664 -07 000000585 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:53.704 -07 000000585 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:53.704 -07 000000585 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:31:53.704 -07 000000585 INF: Y Motor: Moved to 59.9102 after 4563 ms
17-03-18 05:31:53.704 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139391 mm (DAC = 30450)
17-03-18 05:31:53.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.714 -07 000000502 INF: FPGA: Recv ZSGSRD 30994
17-03-18 05:31:53.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:31:53.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.714 -07 000000382 INF: FPGA: Recv ZSGSRD 30991
17-03-18 05:31:53.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.724 -07 000000585 INF: FPGA: Recv ZSGSRD 30988
17-03-18 05:31:53.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.734 -07 000000455 INF: FPGA: Recv ZSGSRD 30985
17-03-18 05:31:53.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.744 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.744 -07 000000592 INF: FPGA: Recv ZSGSRD 30985
17-03-18 05:31:53.754 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.754 -07 000000585 INF: FPGA: Recv ZSGSRD 30992
17-03-18 05:31:53.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.764 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.764 -07 000000592 INF: FPGA: Recv ZSGSRD 30989
17-03-18 05:31:53.774 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.774 -07 000000585 INF: FPGA: Recv ZSGSRD 30983
17-03-18 05:31:53.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.784 -07 000000012 INF: FPGA: Recv ZSGSRD 30989
17-03-18 05:31:53.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:53.794 -07 000000437 INF: FPGA: Recv ZSGSRD 30988
17-03-18 05:31:53.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.804 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:53.804 -07 000000579 INF: FPGA: Recv ZPIEZORD 26474
17-03-18 05:31:53.814 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:53.814 -07 000000561 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.646 V. Piezo Error = -9.9 V.
17-03-18 05:31:53.814 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30988 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30988 (-138.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30983 (-138.6 uncal um), Max = 30994 (-138.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:31:53.814 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30988, posNoise = 6, negNoise = 5
17-03-18 05:31:53.814 -07 000000561 INF: Z Motor: After move to -0.139391, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:53.814 -07 000000561 INF: Z Motor: Settle wait time = 4569 ms, measure time = 102 ms (allowed 150 ms), total time = 4671 ms
17-03-18 05:31:53.814 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:53.864 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4724 ms
17-03-18 05:31:53.864 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:53.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:53.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:53.864 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:53.864 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:53.864 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:53.864 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:53.864 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:53.864 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:31:53.894 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 05:31:53.894 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:53.894 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:53.894 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:53.904 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:31:53.904 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-18 05:31:53.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:53.954 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:54.174 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.997626,
17-03-18 05:31:54.254 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:54.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:54.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:54.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 05:31:54.294 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:54.294 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:54.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:31:54.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:31:54.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:54.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:31:54.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:31:54.394 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:54.394 -07 000000455 INF: Image SNR check: start
17-03-18 05:31:54.394 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:54.404 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:54.404 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:54.404 -07 000000455 INF: Image SNR check: pass  [peak (Max-Min)=111.25]
17-03-18 05:31:54.404 -07 000000455 INF: Autofocus start
17-03-18 05:31:54.404 -07 000000455 INF: MeasureProfile start
17-03-18 05:31:54.414 -07 000000455 INF: MeasureProfile done
17-03-18 05:31:54.414 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:31:54.414 -07 000000455 INF: Autofocus finished
17-03-18 05:31:54.604 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:54.604 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:54.604 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139396837860024. ----------
17-03-18 05:31:54.604 -07 000000610 INF: Cycle	138	Tile	1	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:54.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28945, sync = True, waitForSettling = True)
17-03-18 05:31:54.614 -07 000000610 INF: Z Motor: Moving to -0.132502 mm, started at -0.139397 mm, distance = 6.90 um
17-03-18 05:31:54.614 -07 000000610 INF: FPGA: Xmit ZDACW 28945\n [Z Motor]
17-03-18 05:31:54.614 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:31:54.624 -07 000000610 INF: FPGA: 'ZDACW 28945' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:54.624 -07 000000382 INF: FPGA: Recv ZDACR 28945
17-03-18 05:31:54.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:54.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.784 -07 000000592 INF: FPGA: Recv ZSGSRD 29916
17-03-18 05:31:54.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:54.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:31:54.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.804 -07 000000591 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:31:54.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.814 -07 000000455 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:31:54.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.824 -07 000000591 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:31:54.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.834 -07 000000561 INF: FPGA: Recv ZSGSRD 29913
17-03-18 05:31:54.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.844 -07 000000592 INF: FPGA: Recv ZSGSRD 29917
17-03-18 05:31:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:31:54.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.854 -07 000000382 INF: FPGA: Recv ZSGSRD 29919
17-03-18 05:31:54.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.864 -07 000000561 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:31:54.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:54.874 -07 000000591 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:31:54.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:54.884 -07 000000592 INF: FPGA: Recv ZPIEZORD 25323
17-03-18 05:31:54.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:54.894 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.1 V.
17-03-18 05:31:54.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29915 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29911 (-131.7 uncal um), Max = 29919 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:31:54.894 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 5, negNoise = 3
17-03-18 05:31:54.894 -07 000000610 INF: Z Motor: After move to -0.132502, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:54.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:31:54.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:54.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:54.894 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:54.894 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:54.894 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:54.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:54.894 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:54.894 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:54.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:54.894 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:54.894 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:54.894 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:31:54.894 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:54.894 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:54.904 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:31:54.904 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:31:54.914 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:31:54.914 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:54.924 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:31:54.924 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:54.924 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:31:54.924 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 05:31:54.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29121 150\n [Camera]
17-03-18 05:31:55.134 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:55.574 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:55.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:55.574 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:55.574 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:55.574 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:31:55.574 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:55.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:55.574 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:55.574 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:55.574 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:31:55.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29121 825
17-03-18 05:31:55.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:31:55.954 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:31:55.954 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:31:55.954 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:55.954 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:31:55.954 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:31:55.954 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:55.964 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:55.964 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:31:55.964 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:31:55.964 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:31:56.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:31:56.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:31:56.124 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:56.124 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:56.124 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:31:56.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:31:56.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:31:56.134 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:56.134 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:56.134 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:31:56.314 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:31:56.314 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:31:56.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29121 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-18 05:31:56.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:31:56.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132497234019772. ------
17-03-18 05:31:56.324 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:56.324 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13886 mm
17-03-18 05:31:56.324 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:31:56.334 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:56.334 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:31:56.334 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:31:56.334 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:31:56.334 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:31:56.334 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30334, sync = True, waitForSettling = False)
17-03-18 05:31:56.334 -07 000000455 INF: Z Motor: Moving to -0.138860 mm, started at -0.132497 mm, distance = -6.36 um
17-03-18 05:31:56.344 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:56.344 -07 000000606 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:31:56.354 -07 000000455 INF: FPGA: Xmit ZDACW 30334\n [Z Motor]
17-03-18 05:31:56.354 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:31:56.354 -07 000000382 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:56.354 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:31:56.354 -07 000000382 INF: Y Motor: Moving 1332 steps1
17-03-18 05:31:56.354 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:31:56.364 -07 000000455 INF: FPGA: 'ZDACW 30334' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:31:56.364 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:31:56.374 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:56.374 -07 000000606 INF: FPGA: Recv ZDACR 30334
17-03-18 05:31:56.384 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:56.384 -07 000000455 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:31:56.514 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:31:56.514 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:31:56.514 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:56.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:31:56.524 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:31:56.524 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:56.524 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:31:56.524 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:31:56.524 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:31:56.534 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:31:56.534 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:31:56.534 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:31:56.734 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:31:56.734 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:31:56.774 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:31:56.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:31:56.784 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:56.784 -07 000000606 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:31:56.794 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:56.794 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:56.794 -07 000000382 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:31:56.794 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec
17-03-18 05:31:57.744 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:31:57.744 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:31:57.754 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:57.754 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:31:57.784 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:31:57.784 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:31:57.784 -07 000000382 INF: Y Motor: Moved to 60.7324 after 1450 ms (table move)
17-03-18 05:31:57.784 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138860 mm (DAC = 30334)
17-03-18 05:31:57.784 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.794 -07 000000382 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:31:57.794 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:31:57.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.794 -07 000000455 INF: FPGA: Recv ZSGSRD 30910
17-03-18 05:31:57.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:31:57.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.804 -07 000000501 INF: FPGA: Recv ZSGSRD 30900
17-03-18 05:31:57.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.814 -07 000000501 INF: FPGA: Recv ZSGSRD 30904
17-03-18 05:31:57.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.824 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.824 -07 000000501 INF: FPGA: Recv ZSGSRD 30899
17-03-18 05:31:57.834 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.834 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.834 -07 000000455 INF: FPGA: Recv ZSGSRD 30909
17-03-18 05:31:57.844 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.844 -07 000000501 INF: FPGA: Recv ZSGSRD 30908
17-03-18 05:31:57.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.854 -07 000000455 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:31:57.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.864 -07 000000501 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:31:57.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:57.874 -07 000000501 INF: FPGA: Recv ZSGSRD 30904
17-03-18 05:31:57.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.884 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:57.884 -07 000000501 INF: FPGA: Recv ZPIEZORD 26685
17-03-18 05:31:57.894 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:57.894 -07 000000629 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 05:31:57.894 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30906 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30906 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30899 (-138.0 uncal um), Max = 30914 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:31:57.894 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30906, posNoise = 8, negNoise = 7
17-03-18 05:31:57.894 -07 000000629 INF: Z Motor: After move to -0.138860, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:57.894 -07 000000629 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms
17-03-18 05:31:57.894 -07 000000629 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:31:57.944 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:31:57.944 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:31:57.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:57.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:57.944 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:57.944 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:57.944 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:31:57.944 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:57.944 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:57.944 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:31:57.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:31:57.954 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:31:57.964 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 05:31:57.964 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:31:57.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:31:58.014 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:31:58.314 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:31:58.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:31:58.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:31:58.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 05:31:58.354 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:31:58.354 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:31:58.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:31:58.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:31:58.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:31:58.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:31:58.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:31:58.454 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:31:58.454 -07 000000629 INF: Autofocus start
17-03-18 05:31:58.454 -07 000000629 INF: MeasureProfile start
17-03-18 05:31:58.464 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:31:58.464 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 05:31:58.464 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:31:58.464 -07 000000629 INF: MeasureProfile done
17-03-18 05:31:58.464 -07 000000629 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:31:58.464 -07 000000629 INF: Autofocus finished
17-03-18 05:31:58.664 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:31:58.664 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:31:58.674 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138870052464399. ----------
17-03-18 05:31:58.674 -07 000000610 INF: Cycle	138	Tile	2	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:31:58.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28858, sync = True, waitForSettling = True)
17-03-18 05:31:58.674 -07 000000610 INF: Z Motor: Moving to -0.132103 mm, started at -0.138870 mm, distance = 6.77 um
17-03-18 05:31:58.674 -07 000000610 INF: FPGA: Xmit ZDACW 28858\n [Z Motor]
17-03-18 05:31:58.674 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:31:58.684 -07 000000610 INF: FPGA: 'ZDACW 28858' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:31:58.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:31:58.684 -07 000000625 INF: FPGA: Recv ZDACR 28858
17-03-18 05:31:58.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:31:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.844 -07 000000625 INF: FPGA: Recv ZSGSRD 29856
17-03-18 05:31:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:31:58.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.854 -07 000000606 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:31:58.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.864 -07 000000424 INF: FPGA: Recv ZSGSRD 29859
17-03-18 05:31:58.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:31:58.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:31:58.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29856
17-03-18 05:31:58.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.914 -07 000000382 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:31:58.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:31:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.924 -07 000000561 INF: FPGA: Recv ZSGSRD 29847
17-03-18 05:31:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.934 -07 000000629 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:31:58.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:31:58.944 -07 000000625 INF: FPGA: Recv ZSGSRD 29855
17-03-18 05:31:58.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:31:58.954 -07 000000625 INF: FPGA: Recv ZPIEZORD 25310
17-03-18 05:31:58.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:31:58.964 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.0 V.
17-03-18 05:31:58.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29855 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29847 (-131.3 uncal um), Max = 29862 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:31:58.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 7, negNoise = 8
17-03-18 05:31:58.964 -07 000000610 INF: Z Motor: After move to -0.132103, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:31:58.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:31:58.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:31:58.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:31:58.964 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:31:58.964 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:31:58.964 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:31:58.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:31:58.964 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:31:58.964 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:31:58.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:31:58.964 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:31:58.964 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:31:58.964 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:31:58.974 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:31:58.974 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:31:58.974 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:31:58.974 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:31:58.984 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:31:58.984 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:31:58.984 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:31:58.984 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:31:58.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29035 150\n [Camera]
17-03-18 05:31:59.184 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:31:59.554 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.99219,
17-03-18 05:31:59.634 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:31:59.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:31:59.634 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:31:59.634 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:31:59.634 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:31:59.634 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:31:59.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:31:59.634 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:31:59.634 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:31:59.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:31:59.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29035 825
17-03-18 05:31:59.974 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:00.024 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:32:00.024 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:32:00.024 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:00.034 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:00.034 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:32:00.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:32:00.034 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:32:00.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:00.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:00.044 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:32:00.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:00.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:00.184 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:00.184 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:00.184 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:32:00.184 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:00.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:00.184 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:00.184 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:00.184 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:32:00.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:00.374 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:00.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29035 150' command took 2 ms to send, 1377 ms to get response, and 1387 ms overall
17-03-18 05:32:00.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:00.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132118205503408. ------
17-03-18 05:32:00.384 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:00.384 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13896 mm
17-03-18 05:32:00.384 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:00.384 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:32:00.384 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:32:00.384 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30355, sync = True, waitForSettling = False)
17-03-18 05:32:00.384 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:00.384 -07 000000569 INF: Z Motor: Moving to -0.138956 mm, started at -0.132118 mm, distance = -6.84 um
17-03-18 05:32:00.394 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:00.394 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:00.394 -07 000000579 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:32:00.404 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:32:00.404 -07 000000382 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:00.404 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:00.404 -07 000000382 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:32:00.404 -07 000000569 INF: FPGA: Xmit ZDACW 30355\n [Z Motor]
17-03-18 05:32:00.404 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:32:00.414 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:00.414 -07 000000569 INF: FPGA: 'ZDACW 30355' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:32:00.424 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:00.434 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:00.434 -07 000000579 INF: FPGA: Recv ZDACR 30355
17-03-18 05:32:00.444 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:00.444 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:32:00.594 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:32:00.594 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:32:00.594 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:00.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:32:00.594 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:32:00.594 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:00.594 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:00.594 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:00.594 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:32:00.604 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:32:00.614 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:00.614 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:32:00.794 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:32:00.794 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:32:00.844 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:00.854 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:32:00.854 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:32:00.854 -07 000000382 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:00.854 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:32:00.854 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:32:01.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:01.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:01.804 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:01.804 -07 000000467 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:32:01.814 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:01.814 -07 000000382 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:01.844 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:01.844 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:01.844 -07 000000382 INF: Y Motor: Moved to 61.5630 after 1456 ms (table move)
17-03-18 05:32:01.844 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138956 mm (DAC = 30355)
17-03-18 05:32:01.844 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.854 -07 000000467 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:32:01.854 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:32:01.854 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.854 -07 000000569 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:32:01.864 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.864 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.864 -07 000000467 INF: FPGA: Recv ZSGSRD 30923
17-03-18 05:32:01.874 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.874 -07 000000467 INF: FPGA: Recv ZSGSRD 30914
17-03-18 05:32:01.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.884 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.884 -07 000000467 INF: FPGA: Recv ZSGSRD 30919
17-03-18 05:32:01.894 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.894 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.894 -07 000000467 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:32:01.904 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.904 -07 000000467 INF: FPGA: Recv ZSGSRD 30911
17-03-18 05:32:01.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.914 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.914 -07 000000467 INF: FPGA: Recv ZSGSRD 30918
17-03-18 05:32:01.924 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.924 -07 000000467 INF: FPGA: Recv ZSGSRD 30921
17-03-18 05:32:01.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:01.934 -07 000000629 INF: FPGA: Recv ZSGSRD 30920
17-03-18 05:32:01.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.944 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:01.944 -07 000000382 INF: FPGA: Recv ZPIEZORD 26760
17-03-18 05:32:01.954 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:01.954 -07 000000444 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.2 V.
17-03-18 05:32:01.954 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30919 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30911 (-138.1 uncal um), Max = 30923 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:32:01.954 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30919, posNoise = 4, negNoise = 8
17-03-18 05:32:01.954 -07 000000444 INF: Z Motor: After move to -0.138956, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:01.954 -07 000000444 INF: Z Motor: Settle wait time = 1459 ms, measure time = 103 ms (allowed 150 ms), total time = 1562 ms
17-03-18 05:32:01.954 -07 000000444 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:02.004 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 05:32:02.004 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:02.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:02.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:02.004 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:02.004 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:02.004 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:02.004 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:02.004 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:02.004 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:02.014 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:02.014 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:02.014 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:32:02.014 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:32:02.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:02.064 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:02.364 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:02.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:02.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:02.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 05:32:02.404 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:02.404 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:02.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:32:02.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:32:02.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:02.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:32:02.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:32:02.504 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:02.504 -07 000000467 INF: Autofocus start
17-03-18 05:32:02.504 -07 000000467 INF: MeasureProfile start
17-03-18 05:32:02.504 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:02.514 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:02.514 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:02.514 -07 000000467 INF: MeasureProfile done
17-03-18 05:32:02.514 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:32:02.514 -07 000000467 INF: Autofocus finished
17-03-18 05:32:02.714 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:02.714 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:02.714 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138953567222242. ----------
17-03-18 05:32:02.714 -07 000000610 INF: Cycle	138	Tile	3	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:02.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28880, sync = True, waitForSettling = True)
17-03-18 05:32:02.724 -07 000000610 INF: Z Motor: Moving to -0.132204 mm, started at -0.138954 mm, distance = 6.75 um
17-03-18 05:32:02.724 -07 000000610 INF: FPGA: Xmit ZDACW 28880\n [Z Motor]
17-03-18 05:32:02.724 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:32:02.734 -07 000000610 INF: FPGA: 'ZDACW 28880' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:02.734 -07 000000625 INF: FPGA: Recv ZDACR 28880
17-03-18 05:32:02.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.894 -07 000000444 INF: FPGA: Recv ZSGSRD 29870
17-03-18 05:32:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.904 -07 000000569 INF: FPGA: Recv ZSGSRD 29861
17-03-18 05:32:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.914 -07 000000625 INF: FPGA: Recv ZSGSRD 29871
17-03-18 05:32:02.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.924 -07 000000569 INF: FPGA: Recv ZSGSRD 29870
17-03-18 05:32:02.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.934 -07 000000444 INF: FPGA: Recv ZSGSRD 29867
17-03-18 05:32:02.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.944 -07 000000625 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:32:02.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.954 -07 000000591 INF: FPGA: Recv ZSGSRD 29877
17-03-18 05:32:02.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.964 -07 000000625 INF: FPGA: Recv ZSGSRD 29877
17-03-18 05:32:02.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.974 -07 000000569 INF: FPGA: Recv ZSGSRD 29868
17-03-18 05:32:02.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:02.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:32:02.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:02.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:02.994 -07 000000569 INF: FPGA: Recv ZPIEZORD 25345
17-03-18 05:32:03.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:03.004 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.9 V.
17-03-18 05:32:03.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29869 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29869 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29861 (-131.4 uncal um), Max = 29877 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:32:03.004 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29869, posNoise = 8, negNoise = 8
17-03-18 05:32:03.004 -07 000000610 INF: Z Motor: After move to -0.132204, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:03.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:32:03.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:03.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:03.004 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:03.004 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:03.004 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:03.004 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:03.004 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:03.004 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:03.004 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:03.004 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:03.004 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:32:03.004 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:03.004 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:32:03.014 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:32:03.014 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:03.014 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:03.024 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:32:03.024 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:32:03.024 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:32:03.024 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:32:03.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29056 150\n [Camera]
17-03-18 05:32:03.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:03.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:03.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:03.674 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:03.674 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:03.674 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:32:03.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:03.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:03.684 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:03.684 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:03.684 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:32:03.864 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29056 825
17-03-18 05:32:04.014 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:04.074 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:32:04.074 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:32:04.074 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:04.084 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:04.084 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:32:04.084 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:32:04.084 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:32:04.084 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:04.084 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:04.094 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:32:04.234 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:04.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:04.234 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:04.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:04.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:04.374 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:04.374 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:04.374 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:32:04.384 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:04.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:32:04.424 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:32:04.424 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:04.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29056 150' command took 3 ms to send, 1383 ms to get response, and 1387 ms overall
17-03-18 05:32:04.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:04.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132208144473393. ------
17-03-18 05:32:04.424 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:04.424 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13866 mm
17-03-18 05:32:04.424 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:04.434 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:32:04.434 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:32:04.434 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:04.764 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:32:04.764 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:32:04.764 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:04.764 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:04.764 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:32:04.764 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:32:04.764 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:04.774 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:04.774 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-18 05:32:04.774 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:32:04.784 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:04.784 -07 000000585 INF: FPGA: Recv YRDPOS 126082
17-03-18 05:32:04.784 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 356 ms to get response, and 357 ms overall
17-03-18 05:32:04.784 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 346 ms to get response, and 355 ms overall
17-03-18 05:32:04.784 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30290, sync = True, waitForSettling = False)
17-03-18 05:32:04.784 -07 000000382 INF: Z Motor: Moving to -0.138659 mm, started at -0.132208 mm, distance = -6.45 um
17-03-18 05:32:04.784 -07 000000561 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:04.794 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:04.794 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:32:04.804 -07 000000382 INF: FPGA: Xmit ZDACW 30290\n [Z Motor]
17-03-18 05:32:04.804 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:32:04.814 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:04.814 -07 000000382 INF: FPGA: 'ZDACW 30290' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:32:04.824 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:04.844 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:04.844 -07 000000585 INF: FPGA: Recv ZDACR 30290
17-03-18 05:32:04.854 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:32:04.854 -07 000000382 INF: Z Motor: MoveAbsStepped took 62 ms (did NOT wait for settling yet))
17-03-18 05:32:05.014 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:05.014 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 225 ms overall
17-03-18 05:32:05.094 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.005817,
17-03-18 05:32:05.194 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 05:32:05.194 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall
17-03-18 05:32:05.244 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:05.254 -07 000000382 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:32:05.254 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:32:05.254 -07 000000561 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:05.254 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:32:05.254 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.840 mm, average velocity = 2.063 mm/sec
17-03-18 05:32:06.204 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:06.204 -07 000000585 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:32:06.214 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:06.214 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:06.244 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:06.244 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:32:06.244 -07 000000561 INF: Y Motor: Moved to 62.3950 after 1810 ms (table move)
17-03-18 05:32:06.244 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138659 mm (DAC = 30290)
17-03-18 05:32:06.244 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30868
17-03-18 05:32:06.254 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 05:32:06.254 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.254 -07 000000585 INF: FPGA: Recv ZSGSRD 30871
17-03-18 05:32:06.264 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:06.264 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.264 -07 000000501 INF: FPGA: Recv ZSGSRD 30875
17-03-18 05:32:06.274 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.274 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.274 -07 000000592 INF: FPGA: Recv ZSGSRD 30868
17-03-18 05:32:06.284 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.284 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30870
17-03-18 05:32:06.294 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.294 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.294 -07 000000561 INF: FPGA: Recv ZSGSRD 30877
17-03-18 05:32:06.304 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.304 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.304 -07 000000437 INF: FPGA: Recv ZSGSRD 30873
17-03-18 05:32:06.314 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.314 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.314 -07 000000585 INF: FPGA: Recv ZSGSRD 30886
17-03-18 05:32:06.324 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.324 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.324 -07 000000501 INF: FPGA: Recv ZSGSRD 30880
17-03-18 05:32:06.334 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.334 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:06.334 -07 000000585 INF: FPGA: Recv ZSGSRD 30872
17-03-18 05:32:06.344 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.344 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:06.344 -07 000000501 INF: FPGA: Recv ZPIEZORD 26699
17-03-18 05:32:06.354 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:06.354 -07 000000502 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.2 V.
17-03-18 05:32:06.354 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30874 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30868 (-137.8 uncal um), Max = 30886 (-137.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:32:06.354 -07 000000502 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30874, posNoise = 12, negNoise = 6
17-03-18 05:32:06.354 -07 000000502 INF: Z Motor: After move to -0.138659, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:06.354 -07 000000502 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:32:06.354 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:06.404 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1971 ms
17-03-18 05:32:06.404 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:06.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:06.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:06.404 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:06.404 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:06.404 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:06.404 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:06.414 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:32:06.414 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:06.414 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:06.414 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:06.424 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:32:06.424 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:32:06.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:06.474 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:06.774 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:06.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:06.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:06.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:32:06.774 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:06.814 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:06.814 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:06.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:32:06.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:32:06.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:06.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:32:06.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:32:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:07.014 -07 000000585 INF: Autofocus start
17-03-18 05:32:07.014 -07 000000585 INF: MeasureProfile start
17-03-18 05:32:07.014 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:07.014 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:07.024 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:07.024 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:07.024 -07 000000585 INF: MeasureProfile done
17-03-18 05:32:07.024 -07 000000585 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:32:07.024 -07 000000585 INF: Autofocus finished
17-03-18 05:32:07.224 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:07.224 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:07.224 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138664477675863. ----------
17-03-18 05:32:07.234 -07 000000610 INF: Cycle	138	Tile	4	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:07.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28785, sync = True, waitForSettling = True)
17-03-18 05:32:07.234 -07 000000610 INF: Z Motor: Moving to -0.131769 mm, started at -0.138664 mm, distance = 6.90 um
17-03-18 05:32:07.234 -07 000000610 INF: FPGA: Xmit ZDACW 28785\n [Z Motor]
17-03-18 05:32:07.234 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:32:07.244 -07 000000610 INF: FPGA: 'ZDACW 28785' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:32:07.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:07.244 -07 000000585 INF: FPGA: Recv ZDACR 28785
17-03-18 05:32:07.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:07.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.404 -07 000000382 INF: FPGA: Recv ZSGSRD 29804
17-03-18 05:32:07.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:07.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.414 -07 000000501 INF: FPGA: Recv ZSGSRD 29800
17-03-18 05:32:07.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.424 -07 000000592 INF: FPGA: Recv ZSGSRD 29800
17-03-18 05:32:07.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.434 -07 000000561 INF: FPGA: Recv ZSGSRD 29797
17-03-18 05:32:07.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29804
17-03-18 05:32:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.454 -07 000000585 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:32:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.464 -07 000000592 INF: FPGA: Recv ZSGSRD 29797
17-03-18 05:32:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29804
17-03-18 05:32:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.484 -07 000000592 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:32:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:07.494 -07 000000585 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:32:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:07.504 -07 000000382 INF: FPGA: Recv ZPIEZORD 25278
17-03-18 05:32:07.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:07.514 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-18 05:32:07.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29801 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29797 (-131.0 uncal um), Max = 29804 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:32:07.514 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 3, negNoise = 4
17-03-18 05:32:07.514 -07 000000610 INF: Z Motor: After move to -0.131769, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:07.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:32:07.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:07.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:07.514 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:07.514 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:07.514 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:07.514 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:07.514 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:07.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:07.514 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:07.514 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:07.514 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:07.514 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:07.524 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:07.524 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:07.524 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:07.524 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:07.524 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:32:07.524 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:32:07.534 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:32:07.534 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:07.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28962 150\n [Camera]
17-03-18 05:32:07.734 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:08.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:08.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:08.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:08.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:08.174 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:08.174 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:08.184 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:08.184 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-18 05:32:08.184 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:08.184 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 05:32:08.364 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28962 826
17-03-18 05:32:08.514 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:08.564 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:32:08.564 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:32:08.564 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:08.564 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:08.574 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:32:08.574 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:32:08.574 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:08.574 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:08.574 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:32:08.574 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:32:08.724 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:08.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:08.724 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:08.734 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:08.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:08.734 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:08.854 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:08.854 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) start.
17-03-18 05:32:08.854 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:08.854 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:32:08.914 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:32:08.914 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:08.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28962 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-18 05:32:08.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:08.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131771298047753. ------
17-03-18 05:32:08.924 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:08.924 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13825 mm
17-03-18 05:32:08.924 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:08.924 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:32:08.924 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30201, sync = True, waitForSettling = False)
17-03-18 05:32:08.924 -07 000000437 INF: Z Motor: Moving to -0.138251 mm, started at -0.131771 mm, distance = -6.48 um
17-03-18 05:32:08.924 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:32:08.924 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:08.934 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:08.934 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:08.934 -07 000000581 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:32:08.944 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:32:08.944 -07 000000437 INF: FPGA: Xmit ZDACW 30201\n [Z Motor]
17-03-18 05:32:08.944 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:08.944 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:08.944 -07 000000501 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:32:08.944 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 05:32:08.954 -07 000000437 INF: FPGA: 'ZDACW 30201' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:32:08.954 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:08.964 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:08.974 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:08.974 -07 000000502 INF: FPGA: Recv ZDACR 30201
17-03-18 05:32:08.984 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:08.984 -07 000000437 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:32:09.154 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:09.154 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:32:09.254 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:32:09.254 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:32:09.254 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:09.254 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:32:09.254 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:09.254 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:09.254 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:09.254 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:09.254 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-18 05:32:09.264 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 05:32:09.334 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:32:09.334 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 05:32:09.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:09.394 -07 000000581 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:32:09.404 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:09.404 -07 000000501 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:09.404 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:32:09.404 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.099 mm/sec
17-03-18 05:32:10.354 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:10.354 -07 000000581 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:32:10.364 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:10.364 -07 000000501 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:10.394 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:10.394 -07 000000501 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:32:10.394 -07 000000501 INF: Y Motor: Moved to 63.2231 after 1464 ms (table move)
17-03-18 05:32:10.394 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138251 mm (DAC = 30201)
17-03-18 05:32:10.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.394 -07 000000592 INF: FPGA: Recv ZSGSRD 30826
17-03-18 05:32:10.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:32:10.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.404 -07 000000581 INF: FPGA: Recv ZSGSRD 30811
17-03-18 05:32:10.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.414 -07 000000502 INF: FPGA: Recv ZSGSRD 30800
17-03-18 05:32:10.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.424 -07 000000581 INF: FPGA: Recv ZSGSRD 30804
17-03-18 05:32:10.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.434 -07 000000581 INF: FPGA: Recv ZSGSRD 30809
17-03-18 05:32:10.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.444 -07 000000581 INF: FPGA: Recv ZSGSRD 30811
17-03-18 05:32:10.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.454 -07 000000581 INF: FPGA: Recv ZSGSRD 30810
17-03-18 05:32:10.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.464 -07 000000592 INF: FPGA: Recv ZSGSRD 30810
17-03-18 05:32:10.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.474 -07 000000592 INF: FPGA: Recv ZSGSRD 30818
17-03-18 05:32:10.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:10.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:10.494 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.000345,
17-03-18 05:32:10.494 -07 000000581 INF: FPGA: Recv ZSGSRD 30811
17-03-18 05:32:10.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:10.514 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:10.514 -07 000000501 INF: FPGA: Recv ZPIEZORD 26597
17-03-18 05:32:10.524 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:10.524 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -9.3 V.
17-03-18 05:32:10.524 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30811 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30810 (-137.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 26 (0.2 uncal um), Min = 30800 (-137.4 uncal um), Max = 30826 (-137.6 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 05:32:10.524 -07 000000382 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30811, posNoise = 15, negNoise = 11
17-03-18 05:32:10.524 -07 000000382 INF: Z Motor: After move to -0.138251, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:10.524 -07 000000382 INF: Z Motor: Settle wait time = 1469 ms, measure time = 124 ms (allowed 150 ms), total time = 1593 ms
17-03-18 05:32:10.524 -07 000000382 INF: Z Motor: Waiting extra 26 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:10.554 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:32:10.554 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:10.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:10.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:10.554 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:10.554 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:10.554 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:10.554 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:10.554 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:10.554 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:10.564 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:10.564 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:10.574 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:32:10.574 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:32:10.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:10.624 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:10.924 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:10.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:10.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:10.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:32:10.964 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:10.964 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:10.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 387 ms overall
17-03-18 05:32:11.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:32:11.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:11.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:11.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:32:11.064 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:11.064 -07 000000629 INF: Autofocus start
17-03-18 05:32:11.064 -07 000000629 INF: MeasureProfile start
17-03-18 05:32:11.064 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:11.074 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:32:11.074 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:11.074 -07 000000629 INF: MeasureProfile done
17-03-18 05:32:11.074 -07 000000629 INF: X=80  Z correction [um]=0.3608828
17-03-18 05:32:11.074 -07 000000629 INF: Autofocus finished
17-03-18 05:32:11.274 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:11.274 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:11.274 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138259752310932. ----------
17-03-18 05:32:11.274 -07 000000610 INF: Cycle	138	Tile	5	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:11.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28793, sync = True, waitForSettling = True)
17-03-18 05:32:11.284 -07 000000610 INF: Z Motor: Moving to -0.131806 mm, started at -0.138260 mm, distance = 6.45 um
17-03-18 05:32:11.284 -07 000000610 INF: FPGA: Xmit ZDACW 28793\n [Z Motor]
17-03-18 05:32:11.284 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:32:11.294 -07 000000610 INF: FPGA: 'ZDACW 28793' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:32:11.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:11.294 -07 000000592 INF: FPGA: Recv ZDACR 28793
17-03-18 05:32:11.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:11.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.454 -07 000000502 INF: FPGA: Recv ZSGSRD 29812
17-03-18 05:32:11.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.464 -07 000000501 INF: FPGA: Recv ZSGSRD 29802
17-03-18 05:32:11.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29802
17-03-18 05:32:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.484 -07 000000581 INF: FPGA: Recv ZSGSRD 29802
17-03-18 05:32:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29807
17-03-18 05:32:11.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.504 -07 000000382 INF: FPGA: Recv ZSGSRD 29811
17-03-18 05:32:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29805
17-03-18 05:32:11.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.524 -07 000000592 INF: FPGA: Recv ZSGSRD 29801
17-03-18 05:32:11.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.534 -07 000000444 INF: FPGA: Recv ZSGSRD 29808
17-03-18 05:32:11.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:11.544 -07 000000382 INF: FPGA: Recv ZSGSRD 29807
17-03-18 05:32:11.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:11.554 -07 000000444 INF: FPGA: Recv ZPIEZORD 25279
17-03-18 05:32:11.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:11.564 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.9 V.
17-03-18 05:32:11.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29801 (-131.0 uncal um), Max = 29812 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:32:11.564 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 6, negNoise = 5
17-03-18 05:32:11.564 -07 000000610 INF: Z Motor: After move to -0.131806, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:11.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:32:11.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:11.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:11.564 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:11.564 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:11.564 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:11.564 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:11.564 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:11.564 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:11.564 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:32:11.564 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:11.564 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:11.564 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:11.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:11.574 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:11.574 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:11.574 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:11.584 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:32:11.584 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:32:11.584 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:32:11.584 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:32:11.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28969 150\n [Camera]
17-03-18 05:32:11.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:11.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:11.784 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:12.224 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:12.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:12.224 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:12.224 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:12.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:12.224 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:12.224 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:12.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:32:12.224 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:12.224 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) start.
17-03-18 05:32:12.414 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28969 825
17-03-18 05:32:12.564 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:32:12.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:32:12.604 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:32:12.604 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:12.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:32:12.604 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:32:12.604 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:12.604 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:12.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:12.604 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:32:12.614 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:32:12.774 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:12.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:12.774 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:12.784 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:12.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 05:32:12.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:12.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:12.784 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:12.784 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:12.784 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:32:12.964 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:12.964 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:12.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28969 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-18 05:32:12.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:12.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131803419108462. ------
17-03-18 05:32:12.974 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:12.974 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13818 mm
17-03-18 05:32:12.974 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:13.094 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:13.094 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 05:32:13.094 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:13.094 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:32:13.094 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:32:13.094 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30186, sync = True, waitForSettling = False)
17-03-18 05:32:13.094 -07 000000591 INF: Z Motor: Moving to -0.138183 mm, started at -0.131803 mm, distance = -6.38 um
17-03-18 05:32:13.104 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:13.104 -07 000000625 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:32:13.114 -07 000000591 INF: FPGA: Xmit ZDACW 30186\n [Z Motor]
17-03-18 05:32:13.114 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:32:13.114 -07 000000502 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:13.114 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:13.114 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:32:13.114 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 05:32:13.124 -07 000000591 INF: FPGA: 'ZDACW 30186' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:32:13.124 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:13.134 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:13.134 -07 000000501 INF: FPGA: Recv ZDACR 30186
17-03-18 05:32:13.144 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:13.144 -07 000000591 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:32:13.184 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:32:13.184 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:32:13.184 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:13.184 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:32:13.184 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:32:13.184 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:13.184 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:13.184 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:32:13.184 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:13.194 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:32:13.294 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:13.294 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 05:32:13.494 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:32:13.494 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:32:13.544 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:13.554 -07 000000437 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:32:13.554 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 05:32:13.554 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:13.554 -07 000000502 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:32:13.554 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-18 05:32:14.504 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:14.504 -07 000000569 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:32:14.514 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:14.514 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:14.544 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:14.544 -07 000000502 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:14.544 -07 000000502 INF: Y Motor: Moved to 64.0562 after 1446 ms (table move)
17-03-18 05:32:14.544 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138183 mm (DAC = 30186)
17-03-18 05:32:14.544 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.544 -07 000000591 INF: FPGA: Recv ZSGSRD 30804
17-03-18 05:32:14.554 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:14.554 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.554 -07 000000625 INF: FPGA: Recv ZSGSRD 30806
17-03-18 05:32:14.564 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.564 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30795
17-03-18 05:32:14.574 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.574 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.574 -07 000000585 INF: FPGA: Recv ZSGSRD 30798
17-03-18 05:32:14.584 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.584 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.584 -07 000000502 INF: FPGA: Recv ZSGSRD 30796
17-03-18 05:32:14.594 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.594 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.594 -07 000000629 INF: FPGA: Recv ZSGSRD 30798
17-03-18 05:32:14.604 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.604 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.604 -07 000000591 INF: FPGA: Recv ZSGSRD 30797
17-03-18 05:32:14.614 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.614 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.614 -07 000000625 INF: FPGA: Recv ZSGSRD 30805
17-03-18 05:32:14.624 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.624 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.624 -07 000000382 INF: FPGA: Recv ZSGSRD 30804
17-03-18 05:32:14.634 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.634 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:14.634 -07 000000467 INF: FPGA: Recv ZSGSRD 30798
17-03-18 05:32:14.644 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.644 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:14.644 -07 000000424 INF: FPGA: Recv ZPIEZORD 26640
17-03-18 05:32:14.654 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:14.654 -07 000000444 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.2 V.
17-03-18 05:32:14.654 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30800 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30798 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30795 (-137.4 uncal um), Max = 30806 (-137.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:32:14.654 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30800, posNoise = 6, negNoise = 5
17-03-18 05:32:14.654 -07 000000444 INF: Z Motor: After move to -0.138183, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:14.654 -07 000000444 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:32:14.654 -07 000000444 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:14.704 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 05:32:14.704 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:14.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:14.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:14.704 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:14.714 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:14.714 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:14.714 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:14.714 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:14.714 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:14.714 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:14.714 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:14.724 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:32:14.724 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:32:14.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:14.764 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:15.064 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:15.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:15.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:15.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:32:15.104 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:15.104 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:15.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:32:15.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:32:15.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:15.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:15.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:32:15.204 -07 000000581 INF: Autofocus start
17-03-18 05:32:15.204 -07 000000581 INF: MeasureProfile start
17-03-18 05:32:15.204 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:15.204 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:15.214 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:15.214 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:15.214 -07 000000581 INF: MeasureProfile done
17-03-18 05:32:15.214 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:32:15.214 -07 000000581 INF: Autofocus finished
17-03-18 05:32:15.414 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:15.414 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:15.414 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.138189085977372. ----------
17-03-18 05:32:15.414 -07 000000610 INF: Cycle	138	Tile	6	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:15.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28693, sync = True, waitForSettling = True)
17-03-18 05:32:15.424 -07 000000610 INF: Z Motor: Moving to -0.131348 mm, started at -0.138189 mm, distance = 6.84 um
17-03-18 05:32:15.424 -07 000000610 INF: FPGA: Xmit ZDACW 28693\n [Z Motor]
17-03-18 05:32:15.424 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:32:15.434 -07 000000610 INF: FPGA: 'ZDACW 28693' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:15.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:15.434 -07 000000424 INF: FPGA: Recv ZDACR 28693
17-03-18 05:32:15.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.594 -07 000000581 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:32:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:15.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.604 -07 000000455 INF: FPGA: Recv ZSGSRD 29733
17-03-18 05:32:15.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:32:15.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.624 -07 000000455 INF: FPGA: Recv ZSGSRD 29736
17-03-18 05:32:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.634 -07 000000444 INF: FPGA: Recv ZSGSRD 29729
17-03-18 05:32:15.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.644 -07 000000424 INF: FPGA: Recv ZSGSRD 29741
17-03-18 05:32:15.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.654 -07 000000581 INF: FPGA: Recv ZSGSRD 29741
17-03-18 05:32:15.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.664 -07 000000455 INF: FPGA: Recv ZSGSRD 29732
17-03-18 05:32:15.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.674 -07 000000424 INF: FPGA: Recv ZSGSRD 29738
17-03-18 05:32:15.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:15.684 -07 000000444 INF: FPGA: Recv ZSGSRD 29732
17-03-18 05:32:15.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:15.694 -07 000000444 INF: FPGA: Recv ZPIEZORD 25212
17-03-18 05:32:15.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:15.704 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.9 V.
17-03-18 05:32:15.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29729 (-130.5 uncal um), Max = 29741 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:32:15.704 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 6, negNoise = 6
17-03-18 05:32:15.704 -07 000000610 INF: Z Motor: After move to -0.131348, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:15.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:32:15.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:15.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:15.704 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:15.704 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:15.704 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:15.704 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:15.704 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:15.704 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:15.704 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:15.704 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:15.704 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:15.704 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:15.704 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:15.704 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:15.714 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:32:15.714 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:15.714 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:32:15.714 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:15.724 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:32:15.724 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:32:15.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28870 150\n [Camera]
17-03-18 05:32:15.874 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.983999,
17-03-18 05:32:15.924 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:16.364 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:16.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:16.364 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:16.364 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:16.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:16.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:16.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:32:16.364 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:16.374 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:16.374 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:32:16.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28870 826
17-03-18 05:32:16.704 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:16.764 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:32:16.764 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:32:16.764 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:16.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:32:16.764 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:32:16.764 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:16.764 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:16.764 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:16.764 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:16.774 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:16.774 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:32:16.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:16.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:16.914 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:16.914 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:16.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:32:16.924 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:16.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:16.924 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:16.924 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:16.924 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2357489536, 0x0, 418435064) start.
17-03-18 05:32:17.104 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:32:17.104 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:17.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28870 150' command took 5 ms to send, 1378 ms to get response, and 1386 ms overall
17-03-18 05:32:17.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:17.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.131347300046397. ------
17-03-18 05:32:17.114 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:17.114 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13787 mm
17-03-18 05:32:17.114 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:17.114 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:32:17.114 -07 000000581 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:32:17.114 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30117, sync = True, waitForSettling = False)
17-03-18 05:32:17.114 -07 000000437 INF: Z Motor: Moving to -0.137867 mm, started at -0.131347 mm, distance = -6.52 um
17-03-18 05:32:17.114 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:17.124 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:32:17.124 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:17.124 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 05:32:17.134 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:32:17.134 -07 000000581 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:17.134 -07 000000437 INF: FPGA: Xmit ZDACW 30117\n [Z Motor]
17-03-18 05:32:17.134 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:32:17.134 -07 000000581 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:17.134 -07 000000581 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:32:17.144 -07 000000437 INF: FPGA: 'ZDACW 30117' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:32:17.144 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:17.154 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:17.164 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:17.164 -07 000000424 INF: FPGA: Recv ZDACR 30117
17-03-18 05:32:17.174 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:17.174 -07 000000437 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 05:32:17.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2357489536, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:32:17.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:32:17.314 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:17.314 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:32:17.314 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:32:17.314 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:17.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:17.324 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:17.324 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:17.324 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:32:17.344 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:17.344 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:32:17.524 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 05:32:17.524 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-18 05:32:17.584 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:17.584 -07 000000444 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:32:17.594 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:17.594 -07 000000581 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:17.594 -07 000000581 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:32:17.594 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.836 mm, average velocity = 2.123 mm/sec
17-03-18 05:32:18.544 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:18.544 -07 000000606 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:32:18.554 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.554 -07 000000581 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:18.584 -07 000000581 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:18.584 -07 000000581 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:18.584 -07 000000581 INF: Y Motor: Moved to 64.8784 after 1462 ms (table move)
17-03-18 05:32:18.584 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137867 mm (DAC = 30117)
17-03-18 05:32:18.584 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.584 -07 000000581 INF: FPGA: Recv ZSGSRD 30751
17-03-18 05:32:18.594 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:18.594 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.594 -07 000000437 INF: FPGA: Recv ZSGSRD 30753
17-03-18 05:32:18.604 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.604 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.604 -07 000000437 INF: FPGA: Recv ZSGSRD 30749
17-03-18 05:32:18.614 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.614 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.614 -07 000000437 INF: FPGA: Recv ZSGSRD 30743
17-03-18 05:32:18.624 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.624 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.624 -07 000000437 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:32:18.634 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.634 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.634 -07 000000437 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:32:18.644 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.644 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.644 -07 000000455 INF: FPGA: Recv ZSGSRD 30755
17-03-18 05:32:18.654 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.654 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.654 -07 000000424 INF: FPGA: Recv ZSGSRD 30747
17-03-18 05:32:18.664 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:18.664 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.664 -07 000000424 INF: FPGA: Recv ZSGSRD 30750
17-03-18 05:32:18.674 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.674 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:18.674 -07 000000581 INF: FPGA: Recv ZSGSRD 30753
17-03-18 05:32:18.684 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.684 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:18.684 -07 000000581 INF: FPGA: Recv ZPIEZORD 26584
17-03-18 05:32:18.694 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:18.694 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.2 V.
17-03-18 05:32:18.694 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30750 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30750 (-137.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30743 (-137.0 uncal um), Max = 30755 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:32:18.694 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30750, posNoise = 5, negNoise = 7
17-03-18 05:32:18.694 -07 000000382 INF: Z Motor: After move to -0.137867, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:18.694 -07 000000382 INF: Z Motor: Settle wait time = 1465 ms, measure time = 106 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:32:18.694 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:18.744 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 05:32:18.744 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:18.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:18.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:18.744 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:18.744 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:18.744 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:18.744 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:18.744 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:18.744 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:18.754 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:32:18.754 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:18.764 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:32:18.764 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:32:18.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:18.814 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:19.114 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:19.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:19.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:19.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 05:32:19.154 -07 000000606 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:32:19.154 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:19.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 05:32:19.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:32:19.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:19.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:19.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:32:19.254 -07 000000561 INF: Autofocus start
17-03-18 05:32:19.254 -07 000000561 INF: MeasureProfile start
17-03-18 05:32:19.254 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:19.254 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:19.264 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:19.264 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:19.264 -07 000000561 INF: MeasureProfile done
17-03-18 05:32:19.264 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:32:19.264 -07 000000561 INF: Autofocus finished
17-03-18 05:32:19.464 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:19.464 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-18 05:32:19.474 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137867875370284. ----------
17-03-18 05:32:19.474 -07 000000610 INF: Cycle	138	Tile	7	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:19.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28641, sync = True, waitForSettling = True)
17-03-18 05:32:19.484 -07 000000610 INF: Z Motor: Moving to -0.131110 mm, started at -0.137868 mm, distance = 6.76 um
17-03-18 05:32:19.484 -07 000000610 INF: FPGA: Xmit ZDACW 28641\n [Z Motor]
17-03-18 05:32:19.484 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:32:19.494 -07 000000610 INF: FPGA: 'ZDACW 28641' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:32:19.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:19.494 -07 000000437 INF: FPGA: Recv ZDACR 28641
17-03-18 05:32:19.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29697
17-03-18 05:32:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.664 -07 000000561 INF: FPGA: Recv ZSGSRD 29704
17-03-18 05:32:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.674 -07 000000561 INF: FPGA: Recv ZSGSRD 29696
17-03-18 05:32:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.684 -07 000000561 INF: FPGA: Recv ZSGSRD 29695
17-03-18 05:32:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29700
17-03-18 05:32:19.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.704 -07 000000606 INF: FPGA: Recv ZSGSRD 29699
17-03-18 05:32:19.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.714 -07 000000606 INF: FPGA: Recv ZSGSRD 29702
17-03-18 05:32:19.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.724 -07 000000606 INF: FPGA: Recv ZSGSRD 29695
17-03-18 05:32:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.734 -07 000000437 INF: FPGA: Recv ZSGSRD 29699
17-03-18 05:32:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:19.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:19.744 -07 000000561 INF: FPGA: Recv ZSGSRD 29699
17-03-18 05:32:19.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:19.754 -07 000000606 INF: FPGA: Recv ZPIEZORD 25183
17-03-18 05:32:19.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:19.764 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.9 V.
17-03-18 05:32:19.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29699 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29699 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29695 (-130.3 uncal um), Max = 29704 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:32:19.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29699, posNoise = 5, negNoise = 4
17-03-18 05:32:19.764 -07 000000610 INF: Z Motor: After move to -0.131110, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:19.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:32:19.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:19.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:19.764 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:19.764 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:19.764 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:19.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:19.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:19.764 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:19.764 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:19.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:19.764 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:19.764 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:19.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:19.774 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:19.774 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:32:19.774 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:19.774 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:32:19.774 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:19.774 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:32:19.784 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:32:19.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28818 150\n [Camera]
17-03-18 05:32:19.984 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:20.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:20.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:20.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:20.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:20.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:32:20.424 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:20.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:20.424 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:20.424 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:20.424 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:32:20.614 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28818 825
17-03-18 05:32:20.764 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:20.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:32:20.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:32:20.814 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:20.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:32:20.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:32:20.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:20.814 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:20.814 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:32:20.814 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:20.824 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:32:20.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:20.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:20.974 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:20.974 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:20.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:20.974 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:20.974 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:32:20.974 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:20.984 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:20.984 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:32:21.164 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1381
17-03-18 05:32:21.164 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:21.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28818 150' command took 2 ms to send, 1379 ms to get response, and 1388 ms overall
17-03-18 05:32:21.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:21.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131116028409294. ------
17-03-18 05:32:21.174 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:21.174 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13785 mm
17-03-18 05:32:21.174 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:21.174 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:32:21.174 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 05:32:21.174 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30113, sync = True, waitForSettling = False)
17-03-18 05:32:21.174 -07 000000579 INF: Z Motor: Moving to -0.137848 mm, started at -0.131116 mm, distance = -6.73 um
17-03-18 05:32:21.174 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:21.184 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:21.184 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:21.184 -07 000000569 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:32:21.194 -07 000000579 INF: FPGA: Xmit ZDACW 30113\n [Z Motor]
17-03-18 05:32:21.194 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:32:21.194 -07 000000606 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:21.194 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:21.194 -07 000000606 INF: Y Motor: Moving 1351 steps-29
17-03-18 05:32:21.194 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:32:21.204 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:21.204 -07 000000579 INF: FPGA: 'ZDACW 30113' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 05:32:21.214 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:21.334 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:21.344 -07 000000592 INF: FPGA: Recv ZDACR 30113
17-03-18 05:32:21.344 -07 000000579 INF: FPGA: 'ZDACR' command took 117 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 05:32:21.344 -07 000000579 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-18 05:32:21.354 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.978563,
17-03-18 05:32:21.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:32:21.384 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:32:21.384 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:21.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:32:21.384 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:32:21.384 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:21.384 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:21.384 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:21.384 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:32:21.394 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:32:21.404 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:21.404 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 05:32:21.584 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:32:21.584 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 250 ms to get response, and 397 ms overall
17-03-18 05:32:21.634 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:21.644 -07 000000569 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:32:21.644 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:32:21.644 -07 000000606 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:21.644 -07 000000606 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:32:21.644 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:32:21.774 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:22.594 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:22.594 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:32:22.604 -07 000000606 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.604 -07 000000606 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:22.654 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:22.654 -07 000000606 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:22.654 -07 000000606 INF: Y Motor: Moved to 65.7134 after 1474 ms (table move)
17-03-18 05:32:22.654 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137848 mm (DAC = 30113)
17-03-18 05:32:22.654 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.654 -07 000000569 INF: FPGA: Recv ZSGSRD 30743
17-03-18 05:32:22.664 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:22.664 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.664 -07 000000606 INF: FPGA: Recv ZSGSRD 30740
17-03-18 05:32:22.674 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.674 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.674 -07 000000012 INF: FPGA: Recv ZSGSRD 30738
17-03-18 05:32:22.684 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.684 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.684 -07 000000437 INF: FPGA: Recv ZSGSRD 30745
17-03-18 05:32:22.694 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.694 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.694 -07 000000502 INF: FPGA: Recv ZSGSRD 30747
17-03-18 05:32:22.704 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.704 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.704 -07 000000502 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:32:22.714 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.714 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.714 -07 000000502 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:32:22.724 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.724 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.724 -07 000000502 INF: FPGA: Recv ZSGSRD 30751
17-03-18 05:32:22.734 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.734 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.734 -07 000000502 INF: FPGA: Recv ZSGSRD 30748
17-03-18 05:32:22.744 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.744 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:22.744 -07 000000502 INF: FPGA: Recv ZSGSRD 30743
17-03-18 05:32:22.754 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.754 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:22.754 -07 000000437 INF: FPGA: Recv ZPIEZORD 26592
17-03-18 05:32:22.764 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:22.764 -07 000000585 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.595 V. Piezo Error = -9.1 V.
17-03-18 05:32:22.764 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30745 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30746 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30738 (-137.0 uncal um), Max = 30751 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:32:22.764 -07 000000585 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30745, posNoise = 6, negNoise = 7
17-03-18 05:32:22.764 -07 000000585 INF: Z Motor: After move to -0.137848, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:22.764 -07 000000585 INF: Z Motor: Settle wait time = 1477 ms, measure time = 107 ms (allowed 150 ms), total time = 1584 ms
17-03-18 05:32:22.764 -07 000000585 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:22.814 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 05:32:22.814 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:22.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:22.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:22.814 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:22.814 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:22.814 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:22.824 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:22.824 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:22.824 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:22.824 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:22.824 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:22.834 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:32:22.834 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:32:22.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:22.874 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:23.174 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:23.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:23.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:23.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:32:23.214 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:23.214 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:23.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 05:32:23.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:32:23.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:23.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:32:23.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:32:23.314 -07 000000585 INF: Autofocus start
17-03-18 05:32:23.314 -07 000000585 INF: MeasureProfile start
17-03-18 05:32:23.314 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:23.324 -07 000000585 INF: MeasureProfile done
17-03-18 05:32:23.324 -07 000000585 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:32:23.324 -07 000000585 INF: Autofocus finished
17-03-18 05:32:23.324 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:23.324 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-18 05:32:23.334 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:23.534 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:23.534 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:23.534 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137835754309576. ----------
17-03-18 05:32:23.534 -07 000000610 INF: Cycle	138	Tile	8	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:23.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28608, sync = True, waitForSettling = True)
17-03-18 05:32:23.544 -07 000000610 INF: Z Motor: Moving to -0.130959 mm, started at -0.137836 mm, distance = 6.88 um
17-03-18 05:32:23.544 -07 000000610 INF: FPGA: Xmit ZDACW 28608\n [Z Motor]
17-03-18 05:32:23.544 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:32:23.554 -07 000000610 INF: FPGA: 'ZDACW 28608' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:23.554 -07 000000585 INF: FPGA: Recv ZDACR 28608
17-03-18 05:32:23.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:23.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.714 -07 000000585 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:32:23.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:23.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.724 -07 000000585 INF: FPGA: Recv ZSGSRD 29680
17-03-18 05:32:23.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.734 -07 000000585 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:32:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.744 -07 000000585 INF: FPGA: Recv ZSGSRD 29682
17-03-18 05:32:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.754 -07 000000585 INF: FPGA: Recv ZSGSRD 29672
17-03-18 05:32:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.764 -07 000000585 INF: FPGA: Recv ZSGSRD 29679
17-03-18 05:32:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.774 -07 000000585 INF: FPGA: Recv ZSGSRD 29673
17-03-18 05:32:23.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.784 -07 000000437 INF: FPGA: Recv ZSGSRD 29674
17-03-18 05:32:23.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.794 -07 000000585 INF: FPGA: Recv ZSGSRD 29680
17-03-18 05:32:23.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:23.804 -07 000000585 INF: FPGA: Recv ZSGSRD 29669
17-03-18 05:32:23.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:23.814 -07 000000455 INF: FPGA: Recv ZPIEZORD 25158
17-03-18 05:32:23.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:23.824 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.9 V.
17-03-18 05:32:23.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29677 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29679 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29682 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:32:23.824 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29677, posNoise = 5, negNoise = 8
17-03-18 05:32:23.824 -07 000000610 INF: Z Motor: After move to -0.130959, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:23.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:32:23.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:23.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:23.824 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:23.824 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:23.824 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:23.824 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:23.824 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:23.824 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:23.824 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:23.824 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:23.824 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:23.824 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:23.824 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:23.824 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:23.834 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:23.834 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:23.834 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:32:23.834 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:32:23.834 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:32:23.844 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:23.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28785 150\n [Camera]
17-03-18 05:32:24.044 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:24.484 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:24.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:24.484 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:24.484 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:24.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:24.484 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:24.494 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:24.494 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:32:24.494 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:24.494 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:32:24.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28785 825
17-03-18 05:32:24.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:24.884 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:32:24.884 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:32:24.884 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:24.884 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 05:32:24.884 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:32:24.884 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:24.884 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:24.884 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:32:24.884 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:24.894 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:32:25.034 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:25.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:25.044 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:25.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:25.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:25.044 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:25.044 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:25.044 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:32:25.054 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:25.054 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:32:25.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:32:25.234 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:25.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28785 150' command took 2 ms to send, 1381 ms to get response, and 1387 ms overall
17-03-18 05:32:25.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:25.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130974695742175. ------
17-03-18 05:32:25.354 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:25.354 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13729 mm
17-03-18 05:32:25.354 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:25.354 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29991, sync = True, waitForSettling = False)
17-03-18 05:32:25.354 -07 000000437 INF: Z Motor: Moving to -0.137290 mm, started at -0.130975 mm, distance = -6.32 um
17-03-18 05:32:25.354 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:25.364 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:32:25.364 -07 000000437 INF: FPGA: Xmit ZDACW 29991\n [Z Motor]
17-03-18 05:32:25.364 -07 000000625 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:32:25.364 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:25.364 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:32:25.374 -07 000000437 INF: FPGA: 'ZDACW 29991' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:25.374 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:25.374 -07 000000591 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:32:25.384 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:25.384 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:25.384 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:25.384 -07 000000625 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:25.384 -07 000000625 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:32:25.394 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:25.394 -07 000000012 INF: FPGA: Recv ZDACR 29991
17-03-18 05:32:25.404 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:25.404 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:25.404 -07 000000437 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:32:25.444 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:32:25.444 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:32:25.444 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:25.444 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:32:25.444 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:32:25.444 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:25.444 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:32:25.444 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:32:25.444 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:25.454 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:32:25.584 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:25.584 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:32:25.774 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 05:32:25.774 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:32:25.824 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:25.834 -07 000000012 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:32:25.834 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:32:25.834 -07 000000625 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:25.834 -07 000000625 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:32:25.834 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 05:32:26.714 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.975845,
17-03-18 05:32:26.784 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:27.314 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:27.314 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:32:27.314 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 521 ms to get response, and 531 ms overall
17-03-18 05:32:27.314 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:27.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:27.344 -07 000000625 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:27.344 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:32:27.344 -07 000000625 INF: Y Motor: Moved to 66.5386 after 1985 ms (table move)
17-03-18 05:32:27.354 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137290 mm (DAC = 29991)
17-03-18 05:32:27.354 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.354 -07 000000592 INF: FPGA: Recv ZSGSRD 30659
17-03-18 05:32:27.364 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.364 -07 000000629 INF: FPGA: Recv ZSGSRD 30659
17-03-18 05:32:27.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.374 -07 000000382 INF: FPGA: Recv ZSGSRD 30661
17-03-18 05:32:27.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.384 -07 000000591 INF: FPGA: Recv ZSGSRD 30665
17-03-18 05:32:27.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.394 -07 000000561 INF: FPGA: Recv ZSGSRD 30657
17-03-18 05:32:27.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.404 -07 000000629 INF: FPGA: Recv ZSGSRD 30665
17-03-18 05:32:27.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.414 -07 000000625 INF: FPGA: Recv ZSGSRD 30658
17-03-18 05:32:27.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.424 -07 000000591 INF: FPGA: Recv ZSGSRD 30660
17-03-18 05:32:27.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.434 -07 000000382 INF: FPGA: Recv ZSGSRD 30661
17-03-18 05:32:27.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:27.444 -07 000000591 INF: FPGA: Recv ZSGSRD 30657
17-03-18 05:32:27.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.454 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:27.454 -07 000000625 INF: FPGA: Recv ZPIEZORD 26499
17-03-18 05:32:27.464 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:27.464 -07 000000455 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.2 V.
17-03-18 05:32:27.464 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30660 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30660 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30665 (-136.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:32:27.464 -07 000000455 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30660, posNoise = 5, negNoise = 3
17-03-18 05:32:27.464 -07 000000455 INF: Z Motor: After move to -0.137290, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:27.464 -07 000000455 INF: Z Motor: Settle wait time = 1991 ms, measure time = 111 ms (allowed 150 ms), total time = 2102 ms
17-03-18 05:32:27.464 -07 000000455 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:27.504 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2143 ms
17-03-18 05:32:27.504 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:27.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:27.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:27.504 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:27.504 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:27.504 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:27.504 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:27.504 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:27.504 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:27.514 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:27.514 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:27.514 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:32:27.514 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:32:27.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:27.574 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:27.864 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:27.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:27.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:27.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:32:27.904 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:27.904 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:27.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:32:27.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:32:27.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:27.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:32:27.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:32:28.004 -07 000000455 INF: Autofocus start
17-03-18 05:32:28.004 -07 000000455 INF: MeasureProfile start
17-03-18 05:32:28.004 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:28.004 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:28.014 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:28.014 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:28.014 -07 000000455 INF: MeasureProfile done
17-03-18 05:32:28.014 -07 000000455 INF: X=-86  Z correction [um]=-0.4220354
17-03-18 05:32:28.014 -07 000000455 INF: Autofocus finished
17-03-18 05:32:28.214 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:28.214 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:28.214 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137289696277526. ----------
17-03-18 05:32:28.214 -07 000000610 INF: Cycle	138	Tile	9	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:28.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28412, sync = True, waitForSettling = True)
17-03-18 05:32:28.224 -07 000000610 INF: Z Motor: Moving to -0.130062 mm, started at -0.137290 mm, distance = 7.23 um
17-03-18 05:32:28.224 -07 000000610 INF: FPGA: Xmit ZDACW 28412\n [Z Motor]
17-03-18 05:32:28.224 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:32:28.234 -07 000000610 INF: FPGA: 'ZDACW 28412' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:28.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:28.234 -07 000000591 INF: FPGA: Recv ZDACR 28412
17-03-18 05:32:28.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:28.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29533
17-03-18 05:32:28.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:28.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.404 -07 000000581 INF: FPGA: Recv ZSGSRD 29535
17-03-18 05:32:28.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.414 -07 000000585 INF: FPGA: Recv ZSGSRD 29539
17-03-18 05:32:28.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.424 -07 000000581 INF: FPGA: Recv ZSGSRD 29537
17-03-18 05:32:28.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.434 -07 000000629 INF: FPGA: Recv ZSGSRD 29540
17-03-18 05:32:28.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.444 -07 000000581 INF: FPGA: Recv ZSGSRD 29533
17-03-18 05:32:28.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.454 -07 000000629 INF: FPGA: Recv ZSGSRD 29534
17-03-18 05:32:28.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.464 -07 000000585 INF: FPGA: Recv ZSGSRD 29533
17-03-18 05:32:28.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.474 -07 000000629 INF: FPGA: Recv ZSGSRD 29540
17-03-18 05:32:28.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:28.484 -07 000000591 INF: FPGA: Recv ZSGSRD 29535
17-03-18 05:32:28.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:28.494 -07 000000592 INF: FPGA: Recv ZPIEZORD 25017
17-03-18 05:32:28.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:28.504 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.335 V. Piezo Error = -9.9 V.
17-03-18 05:32:28.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29536 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29535 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29533 (-129.3 uncal um), Max = 29540 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:32:28.504 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29536, posNoise = 4, negNoise = 3
17-03-18 05:32:28.504 -07 000000610 INF: Z Motor: After move to -0.130062, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:28.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:32:28.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:28.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:28.504 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:28.504 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:28.504 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:28.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:28.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:32:28.504 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:28.504 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:28.504 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:28.504 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:28.504 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:28.514 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:32:28.514 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:28.514 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:28.514 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:28.514 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:32:28.514 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:32:28.524 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 05:32:28.524 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:32:28.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28588 150\n [Camera]
17-03-18 05:32:28.724 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:29.164 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:29.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:29.164 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:29.174 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:29.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:32:29.174 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:29.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:29.174 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:29.174 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:29.174 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:32:29.354 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28588 827
17-03-18 05:32:29.504 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:29.544 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:32:29.544 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 05:32:29.554 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:29.554 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:32:29.554 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:32:29.554 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:29.554 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:29.554 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:29.554 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:32:29.564 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 05:32:29.724 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:29.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:29.724 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:29.724 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:29.724 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 05:32:29.724 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:29.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:29.724 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:29.724 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:29.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:32:29.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:29.914 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:29.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28588 150' command took 2 ms to send, 1382 ms to get response, and 1387 ms overall
17-03-18 05:32:29.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:29.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130068881830187. ------
17-03-18 05:32:29.914 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:29.914 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13685 mm
17-03-18 05:32:29.914 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:29.924 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:29.924 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:29.924 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:32:29.924 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:29.924 -07 000000629 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:32:29.924 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29896, sync = True, waitForSettling = False)
17-03-18 05:32:29.924 -07 000000591 INF: Z Motor: Moving to -0.136855 mm, started at -0.130069 mm, distance = -6.79 um
17-03-18 05:32:29.934 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:29.934 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:32:29.944 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:32:29.944 -07 000000629 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:29.944 -07 000000629 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:29.944 -07 000000629 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:32:29.944 -07 000000591 INF: FPGA: Xmit ZDACW 29896\n [Z Motor]
17-03-18 05:32:29.944 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:32:29.954 -07 000000591 INF: FPGA: 'ZDACW 29896' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:32:29.954 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:29.954 -07 000000561 INF: FPGA: Recv ZDACR 29896
17-03-18 05:32:29.964 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:29.964 -07 000000591 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 05:32:29.964 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:30.124 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:30.124 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:32:30.124 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:32:30.124 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:32:30.124 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:30.124 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:32:30.124 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:32:30.124 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:30.134 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:30.134 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:30.134 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:32:30.134 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:32:30.334 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:32:30.334 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:32:30.384 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:30.394 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:32:30.394 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:32:30.394 -07 000000629 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:30.394 -07 000000629 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:32:30.394 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 05:32:31.344 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:31.344 -07 000000382 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:32:31.354 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:31.354 -07 000000629 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:31.384 -07 000000629 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:31.384 -07 000000629 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:32:31.384 -07 000000629 INF: Y Motor: Moved to 67.3716 after 1461 ms (table move)
17-03-18 05:32:31.394 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136855 mm (DAC = 29896)
17-03-18 05:32:31.394 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.394 -07 000000592 INF: FPGA: Recv ZSGSRD 30598
17-03-18 05:32:31.404 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.404 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30592
17-03-18 05:32:31.414 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.414 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.414 -07 000000382 INF: FPGA: Recv ZSGSRD 30590
17-03-18 05:32:31.424 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.424 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.424 -07 000000629 INF: FPGA: Recv ZSGSRD 30586
17-03-18 05:32:31.434 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.434 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.434 -07 000000382 INF: FPGA: Recv ZSGSRD 30588
17-03-18 05:32:31.444 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.444 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.444 -07 000000629 INF: FPGA: Recv ZSGSRD 30599
17-03-18 05:32:31.454 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.454 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.454 -07 000000579 INF: FPGA: Recv ZSGSRD 30597
17-03-18 05:32:31.464 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.464 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.464 -07 000000592 INF: FPGA: Recv ZSGSRD 30596
17-03-18 05:32:31.474 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.474 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.474 -07 000000561 INF: FPGA: Recv ZSGSRD 30593
17-03-18 05:32:31.484 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.484 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:31.484 -07 000000629 INF: FPGA: Recv ZSGSRD 30589
17-03-18 05:32:31.494 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.494 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:31.494 -07 000000561 INF: FPGA: Recv ZPIEZORD 26445
17-03-18 05:32:31.504 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:31.504 -07 000000585 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.1 V.
17-03-18 05:32:31.504 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30593 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30592 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30586 (-136.0 uncal um), Max = 30599 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:32:31.504 -07 000000585 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30593, posNoise = 6, negNoise = 7
17-03-18 05:32:31.504 -07 000000585 INF: Z Motor: After move to -0.136855, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:31.504 -07 000000585 INF: Z Motor: Settle wait time = 1466 ms, measure time = 111 ms (allowed 150 ms), total time = 1577 ms
17-03-18 05:32:31.504 -07 000000585 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:31.544 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 05:32:31.544 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:31.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:31.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:31.544 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:31.544 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:31.544 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:31.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:31.544 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:31.544 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:31.554 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:31.554 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:31.554 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:32:31.554 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:32:31.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:31.604 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:31.774 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:31.904 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:31.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:31.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:31.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-18 05:32:31.944 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:31.944 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:31.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:32:32.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:32:32.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:32.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:32:32.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:32:32.044 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:32.044 -07 000000629 INF: Autofocus start
17-03-18 05:32:32.044 -07 000000629 INF: MeasureProfile start
17-03-18 05:32:32.044 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:32.054 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:32.054 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:32.054 -07 000000629 INF: MeasureProfile done
17-03-18 05:32:32.054 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:32:32.054 -07 000000629 INF: Autofocus finished
17-03-18 05:32:32.254 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:32.254 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:32.254 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.136859274064028. ----------
17-03-18 05:32:32.254 -07 000000610 INF: Cycle	138	Tile	10	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:32.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28403, sync = True, waitForSettling = True)
17-03-18 05:32:32.264 -07 000000610 INF: Z Motor: Moving to -0.130021 mm, started at -0.136859 mm, distance = 6.84 um
17-03-18 05:32:32.264 -07 000000610 INF: FPGA: Xmit ZDACW 28403\n [Z Motor]
17-03-18 05:32:32.264 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 05:32:32.274 -07 000000610 INF: FPGA: 'ZDACW 28403' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:32.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:32.274 -07 000000382 INF: FPGA: Recv ZDACR 28403
17-03-18 05:32:32.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:32.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.434 -07 000000592 INF: FPGA: Recv ZSGSRD 29528
17-03-18 05:32:32.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:32.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.444 -07 000000561 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:32:32.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.454 -07 000000382 INF: FPGA: Recv ZSGSRD 29527
17-03-18 05:32:32.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.464 -07 000000561 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:32:32.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.474 -07 000000382 INF: FPGA: Recv ZSGSRD 29532
17-03-18 05:32:32.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.484 -07 000000591 INF: FPGA: Recv ZSGSRD 29530
17-03-18 05:32:32.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.494 -07 000000561 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:32:32.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.504 -07 000000585 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:32:32.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.514 -07 000000424 INF: FPGA: Recv ZSGSRD 29531
17-03-18 05:32:32.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:32.524 -07 000000382 INF: FPGA: Recv ZSGSRD 29527
17-03-18 05:32:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:32.534 -07 000000382 INF: FPGA: Recv ZPIEZORD 25021
17-03-18 05:32:32.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:32.544 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 05:32:32.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29530 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29527 (-129.2 uncal um), Max = 29532 (-129.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:32:32.544 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29530, posNoise = 2, negNoise = 3
17-03-18 05:32:32.544 -07 000000610 INF: Z Motor: After move to -0.130021, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:32.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:32:32.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:32.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:32.544 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:32.544 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:32.544 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:32.544 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:32.544 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:32.544 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:32.544 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:32.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:32.544 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:32.544 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:32.554 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:32.554 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:32.554 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:32.554 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:32.564 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:32:32.564 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:32:32.564 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:32:32.564 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:32:32.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28580 150\n [Camera]
17-03-18 05:32:32.634 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 3.986717,
17-03-18 05:32:32.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 05:32:33.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:33.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:33.214 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:33.214 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:33.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:32:33.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:33.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:33.214 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:33.214 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:33.214 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:32:33.404 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28580 825
17-03-18 05:32:33.554 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:33.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:32:33.614 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:32:33.614 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:33.614 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:32:33.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:33.614 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:33.614 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:32:33.614 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:33.624 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:33.624 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:32:33.764 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:33.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:33.764 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:33.764 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:33.764 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 05:32:33.774 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:33.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:33.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:33.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:33.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:32:33.954 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1381
17-03-18 05:32:33.964 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:33.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28580 150' command took 2 ms to send, 1380 ms to get response, and 1389 ms overall
17-03-18 05:32:33.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:33.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130030336557336. ------
17-03-18 05:32:34.084 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13646 mm
17-03-18 05:32:34.094 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:34.094 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:34.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 05:32:34.174 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:32:34.174 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:34.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:32:34.174 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:32:34.174 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:34.184 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:34.184 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:34.184 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:32:34.184 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:32:34.194 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:32:34.194 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 05:32:34.194 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:34.194 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:34.194 -07 000000579 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:32:34.194 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 97 ms to get response, and 107 ms overall
17-03-18 05:32:34.194 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29809, sync = True, waitForSettling = False)
17-03-18 05:32:34.194 -07 000000579 INF: Z Motor: Moving to -0.136457 mm, started at -0.130030 mm, distance = -6.43 um
17-03-18 05:32:34.204 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:34.204 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:34.204 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:34.204 -07 000000625 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:32:34.204 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:34.214 -07 000000579 INF: FPGA: Xmit ZDACW 29809\n [Z Motor]
17-03-18 05:32:34.224 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:34.814 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:32:34.814 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:34.814 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 05:32:34.814 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 600 ms to get response, and 613 ms overall
17-03-18 05:32:34.814 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 580 ms to get response, and 610 ms overall
17-03-18 05:32:34.814 -07 000000579 INF: FPGA: 'ZDACW 29809' command took 0 ms to send, 590 ms to get response, and 612 ms overall
17-03-18 05:32:34.814 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:34.814 -07 000000501 INF: FPGA: Recv ZDACR 29809
17-03-18 05:32:34.824 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:34.824 -07 000000579 INF: Z Motor: MoveAbsStepped took 621 ms (did NOT wait for settling yet))
17-03-18 05:32:34.864 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:34.874 -07 000000592 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:32:34.874 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:32:34.874 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:34.874 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:32:34.874 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 610 ms, distance = 0.841 mm, average velocity = 1.379 mm/sec
17-03-18 05:32:35.824 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:35.824 -07 000000501 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:32:35.834 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:35.834 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:35.864 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:35.864 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:35.864 -07 000000625 INF: Y Motor: Moved to 68.2041 after 1667 ms (table move)
17-03-18 05:32:35.864 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136457 mm (DAC = 29809)
17-03-18 05:32:35.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.864 -07 000000501 INF: FPGA: Recv ZSGSRD 30537
17-03-18 05:32:35.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:35.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.874 -07 000000625 INF: FPGA: Recv ZSGSRD 30526
17-03-18 05:32:35.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.884 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.884 -07 000000592 INF: FPGA: Recv ZSGSRD 30531
17-03-18 05:32:35.894 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.894 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.894 -07 000000592 INF: FPGA: Recv ZSGSRD 30527
17-03-18 05:32:35.904 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.904 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.904 -07 000000592 INF: FPGA: Recv ZSGSRD 30530
17-03-18 05:32:35.914 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.914 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.914 -07 000000592 INF: FPGA: Recv ZSGSRD 30526
17-03-18 05:32:35.924 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.924 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.924 -07 000000592 INF: FPGA: Recv ZSGSRD 30526
17-03-18 05:32:35.934 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.934 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.934 -07 000000592 INF: FPGA: Recv ZSGSRD 30534
17-03-18 05:32:35.944 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.944 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.944 -07 000000501 INF: FPGA: Recv ZSGSRD 30527
17-03-18 05:32:35.954 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.954 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:35.954 -07 000000606 INF: FPGA: Recv ZSGSRD 30531
17-03-18 05:32:35.964 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.964 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:35.964 -07 000000625 INF: FPGA: Recv ZPIEZORD 26341
17-03-18 05:32:35.974 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:35.974 -07 000000629 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.2 V.
17-03-18 05:32:35.974 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30530 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30526 (-135.6 uncal um), Max = 30537 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:32:35.974 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30530, posNoise = 7, negNoise = 4
17-03-18 05:32:35.974 -07 000000629 INF: Z Motor: After move to -0.136457, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:35.974 -07 000000629 INF: Z Motor: Settle wait time = 1666 ms, measure time = 107 ms (allowed 150 ms), total time = 1773 ms
17-03-18 05:32:35.974 -07 000000629 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:36.024 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1930 ms
17-03-18 05:32:36.024 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:36.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:36.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:36.024 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:36.024 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:36.024 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:36.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:36.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:36.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:36.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:36.034 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:36.034 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:32:36.034 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:32:36.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:36.084 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:36.384 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:36.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:36.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:36.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:32:36.424 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:36.424 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:36.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:32:36.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:32:36.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:36.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:36.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:32:36.524 -07 000000467 INF: Autofocus start
17-03-18 05:32:36.524 -07 000000467 INF: MeasureProfile start
17-03-18 05:32:36.524 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:36.524 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:36.534 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:36.534 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:36.534 -07 000000467 INF: MeasureProfile done
17-03-18 05:32:36.534 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:32:36.534 -07 000000467 INF: Autofocus finished
17-03-18 05:32:36.734 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:36.734 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:36.734 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136454548699097. ----------
17-03-18 05:32:36.734 -07 000000610 INF: Cycle	138	Tile	11	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:36.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28316, sync = True, waitForSettling = True)
17-03-18 05:32:36.744 -07 000000610 INF: Z Motor: Moving to -0.129622 mm, started at -0.136455 mm, distance = 6.83 um
17-03-18 05:32:36.744 -07 000000610 INF: FPGA: Xmit ZDACW 28316\n [Z Motor]
17-03-18 05:32:36.744 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 05:32:36.754 -07 000000610 INF: FPGA: 'ZDACW 28316' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:36.754 -07 000000467 INF: FPGA: Recv ZDACR 28316
17-03-18 05:32:36.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:36.774 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:36.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29471
17-03-18 05:32:36.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.924 -07 000000502 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:32:36.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.934 -07 000000629 INF: FPGA: Recv ZSGSRD 29464
17-03-18 05:32:36.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.944 -07 000000592 INF: FPGA: Recv ZSGSRD 29462
17-03-18 05:32:36.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.954 -07 000000569 INF: FPGA: Recv ZSGSRD 29469
17-03-18 05:32:36.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.964 -07 000000467 INF: FPGA: Recv ZSGSRD 29471
17-03-18 05:32:36.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.974 -07 000000501 INF: FPGA: Recv ZSGSRD 29464
17-03-18 05:32:36.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:36.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:36.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29468
17-03-18 05:32:36.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:37.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:37.014 -07 000000606 INF: FPGA: Recv ZSGSRD 29464
17-03-18 05:32:37.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:37.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:37.034 -07 000000467 INF: FPGA: Recv ZSGSRD 29465
17-03-18 05:32:37.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:37.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:37.044 -07 000000501 INF: FPGA: Recv ZPIEZORD 24957
17-03-18 05:32:37.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:37.054 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.9 V.
17-03-18 05:32:37.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29466 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29465 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29462 (-128.8 uncal um), Max = 29471 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:32:37.054 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29466, posNoise = 5, negNoise = 4
17-03-18 05:32:37.054 -07 000000610 INF: Z Motor: After move to -0.129622, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:37.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-18 05:32:37.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:37.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:37.054 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:37.054 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:37.054 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:37.054 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:37.054 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:37.054 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:37.054 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:32:37.054 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:37.054 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:37.054 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:37.054 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:32:37.054 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:37.064 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:37.064 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:37.074 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:32:37.074 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:37.074 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:32:37.074 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:32:37.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28493 150\n [Camera]
17-03-18 05:32:37.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:37.714 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:37.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:37.714 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:37.714 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:37.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:37.714 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:37.724 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:37.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:32:37.724 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:37.724 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:32:37.904 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28493 825
17-03-18 05:32:37.994 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.011254,
17-03-18 05:32:38.054 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:38.114 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 05:32:38.114 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:32:38.114 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:38.114 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:32:38.114 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:32:38.114 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:38.114 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:38.114 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:32:38.114 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:38.124 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 05:32:38.274 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:38.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:38.274 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:38.274 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:38.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:38.274 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:38.284 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:38.284 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:32:38.284 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:38.284 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:32:38.684 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:32:38.684 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:38.684 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:38.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:32:38.684 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:32:38.684 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:38.694 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:38.694 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 05:32:38.694 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:38.704 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 424 ms.
17-03-18 05:32:38.704 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:38.704 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:38.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28493 150' command took 2 ms to send, 1622 ms to get response, and 1628 ms overall
17-03-18 05:32:38.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:38.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129619186980263. ------
17-03-18 05:32:38.704 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:38.714 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13626 mm
17-03-18 05:32:38.714 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:39.524 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:39.524 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 810 ms to get response, and 812 ms overall
17-03-18 05:32:39.524 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:39.524 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:32:39.524 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:32:39.534 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:40.054 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29767, sync = True, waitForSettling = False)
17-03-18 05:32:40.054 -07 000000437 INF: Z Motor: Moving to -0.136265 mm, started at -0.129619 mm, distance = -6.65 um
17-03-18 05:32:40.054 -07 000000437 INF: FPGA: Xmit ZDACW 29767\n [Z Motor]
17-03-18 05:32:40.584 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:32:40.584 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:40.584 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1040 ms to get response, and 1058 ms overall
17-03-18 05:32:40.584 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1050 ms to get response, and 1059 ms overall
17-03-18 05:32:40.584 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:32:40.584 -07 000000437 INF: FPGA: 'ZDACW 29767' command took 0 ms to send, 521 ms to get response, and 529 ms overall
17-03-18 05:32:40.584 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:40.584 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:40.584 -07 000000592 INF: FPGA: Recv ZDACR 29767
17-03-18 05:32:40.584 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:40.584 -07 000000444 INF: Y Motor: Moving 1341 steps-17
17-03-18 05:32:40.594 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:40.594 -07 000000437 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-18 05:32:40.594 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:40.964 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:32:40.964 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 05:32:41.014 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:41.024 -07 000000592 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:32:41.024 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:32:41.024 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:41.024 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:32:41.024 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.201 mm/sec
17-03-18 05:32:41.774 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:41.974 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:41.974 -07 000000592 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:32:41.984 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:41.984 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:42.014 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:42.014 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:42.014 -07 000000444 INF: Y Motor: Moved to 69.0264 after 2489 ms (table move)
17-03-18 05:32:42.014 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136265 mm (DAC = 29767)
17-03-18 05:32:42.014 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.014 -07 000000444 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:32:42.024 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:42.024 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.024 -07 000000444 INF: FPGA: Recv ZSGSRD 30501
17-03-18 05:32:42.034 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.034 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.034 -07 000000437 INF: FPGA: Recv ZSGSRD 30499
17-03-18 05:32:42.044 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.044 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.044 -07 000000437 INF: FPGA: Recv ZSGSRD 30493
17-03-18 05:32:42.054 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.054 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.054 -07 000000437 INF: FPGA: Recv ZSGSRD 30499
17-03-18 05:32:42.064 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.064 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.064 -07 000000444 INF: FPGA: Recv ZSGSRD 30494
17-03-18 05:32:42.074 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.084 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.084 -07 000000437 INF: FPGA: Recv ZSGSRD 30511
17-03-18 05:32:42.094 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:42.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.094 -07 000000437 INF: FPGA: Recv ZSGSRD 30500
17-03-18 05:32:42.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.104 -07 000000455 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:32:42.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.114 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:42.114 -07 000000592 INF: FPGA: Recv ZSGSRD 30498
17-03-18 05:32:42.124 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.124 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:42.124 -07 000000592 INF: FPGA: Recv ZPIEZORD 26309
17-03-18 05:32:42.134 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.134 -07 000000467 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.2 V.
17-03-18 05:32:42.134 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30500 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30500 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30493 (-135.4 uncal um), Max = 30511 (-135.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:32:42.134 -07 000000467 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30500, posNoise = 11, negNoise = 7
17-03-18 05:32:42.134 -07 000000467 INF: Z Motor: After move to -0.136265, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:42.134 -07 000000467 INF: Z Motor: Settle wait time = 1964 ms, measure time = 115 ms (allowed 150 ms), total time = 2079 ms
17-03-18 05:32:42.134 -07 000000467 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:42.174 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3459 ms
17-03-18 05:32:42.174 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:42.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:42.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:42.174 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:42.174 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:42.174 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:42.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:42.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:42.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:42.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:42.184 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:42.194 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:32:42.194 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:32:42.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:42.244 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:42.544 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:42.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:42.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:42.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:32:42.574 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:42.584 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:42.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:32:42.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:32:42.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:42.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:42.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:32:42.684 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:42.684 -07 000000444 INF: Autofocus start
17-03-18 05:32:42.684 -07 000000444 INF: MeasureProfile start
17-03-18 05:32:42.684 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:42.694 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:42.694 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:42.694 -07 000000444 INF: MeasureProfile done
17-03-18 05:32:42.694 -07 000000444 INF: X=5  Z correction [um]=0.0001036296
17-03-18 05:32:42.694 -07 000000444 INF: Autofocus finished
17-03-18 05:32:42.894 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:42.894 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:42.894 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136261822334844. ----------
17-03-18 05:32:42.894 -07 000000610 INF: Cycle	138	Tile	12	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:42.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = True)
17-03-18 05:32:42.904 -07 000000610 INF: Z Motor: Moving to -0.129453 mm, started at -0.136262 mm, distance = 6.81 um
17-03-18 05:32:42.904 -07 000000610 INF: FPGA: Xmit ZDACW 28279\n [Z Motor]
17-03-18 05:32:42.904 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:32:42.914 -07 000000610 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:42.914 -07 000000592 INF: FPGA: Recv ZDACR 28279
17-03-18 05:32:42.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:42.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.074 -07 000000592 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:32:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.084 -07 000000437 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:32:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.094 -07 000000581 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:32:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.104 -07 000000437 INF: FPGA: Recv ZSGSRD 29441
17-03-18 05:32:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.114 -07 000000585 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:32:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.124 -07 000000592 INF: FPGA: Recv ZSGSRD 29441
17-03-18 05:32:43.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.134 -07 000000581 INF: FPGA: Recv ZSGSRD 29442
17-03-18 05:32:43.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:32:43.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29440
17-03-18 05:32:43.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:43.164 -07 000000467 INF: FPGA: Recv ZSGSRD 29439
17-03-18 05:32:43.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:43.174 -07 000000581 INF: FPGA: Recv ZPIEZORD 24894
17-03-18 05:32:43.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:43.184 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -10.0 V.
17-03-18 05:32:43.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29440 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 3 (0.0 uncal um), Min = 29439 (-128.7 uncal um), Max = 29442 (-128.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 05:32:43.184 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29440, posNoise = 2, negNoise = 1
17-03-18 05:32:43.184 -07 000000610 INF: Z Motor: After move to -0.129453, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:43.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:32:43.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:43.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:43.184 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:43.184 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:43.184 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:43.184 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:43.184 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:43.184 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:43.184 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:43.184 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:43.184 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:43.184 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:43.194 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:32:43.194 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:43.194 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:32:43.194 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:43.204 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:32:43.204 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:32:43.204 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:32:43.204 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:32:43.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28456 150\n [Camera]
17-03-18 05:32:43.354 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.012614,
17-03-18 05:32:43.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:43.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:43.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:43.854 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:43.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:43.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:43.854 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:43.854 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:43.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:32:43.854 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:43.854 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:32:44.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 825
17-03-18 05:32:44.194 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:44.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:32:44.234 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:32:44.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:44.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:32:44.234 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:32:44.234 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:44.234 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:44.234 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:44.234 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:32:44.244 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:32:44.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:44.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:44.404 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:44.404 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:44.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:44.404 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:44.404 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:44.404 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:32:44.524 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:44.524 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:32:44.594 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:44.594 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:44.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28456 150' command took 2 ms to send, 1376 ms to get response, and 1386 ms overall
17-03-18 05:32:44.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:44.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129452157464578. ------
17-03-18 05:32:44.604 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13593 mm
17-03-18 05:32:44.604 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:44.604 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:44.604 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:32:44.604 -07 000000467 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:32:44.604 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29694, sync = True, waitForSettling = False)
17-03-18 05:32:44.604 -07 000000437 INF: Z Motor: Moving to -0.135930 mm, started at -0.129452 mm, distance = -6.48 um
17-03-18 05:32:44.614 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:44.624 -07 000000437 INF: FPGA: Xmit ZDACW 29694\n [Z Motor]
17-03-18 05:32:44.784 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:32:44.784 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 05:32:44.784 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:44.794 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:44.794 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 05:32:44.904 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 05:32:44.904 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 05:32:44.904 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:44.914 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:44.914 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-18 05:32:45.814 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:45.814 -07 000000424 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:32:45.814 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:32:45.814 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1200 ms to get response, and 1208 ms overall
17-03-18 05:32:45.814 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1190 ms to get response, and 1204 ms overall
17-03-18 05:32:45.814 -07 000000467 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:45.814 -07 000000467 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:45.814 -07 000000467 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:32:45.814 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:45.814 -07 000000437 INF: FPGA: 'ZDACW 29694' command took 0 ms to send, 1180 ms to get response, and 1204 ms overall
17-03-18 05:32:45.824 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:45.824 -07 000000424 INF: FPGA: Recv ZDACR 29694
17-03-18 05:32:45.834 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:32:45.834 -07 000000437 INF: Z Motor: MoveAbsStepped took 1223 ms (did NOT wait for settling yet))
17-03-18 05:32:45.834 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:46.014 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:46.014 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 05:32:46.204 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 05:32:46.204 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 05:32:46.254 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:46.264 -07 000000591 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:32:46.264 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:32:46.264 -07 000000467 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:46.264 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:32:46.264 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 05:32:46.774 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:46.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:47.214 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:47.214 -07 000000437 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:32:47.224 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.224 -07 000000467 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:47.254 -07 000000467 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:47.254 -07 000000467 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:47.254 -07 000000467 INF: Y Motor: Moved to 69.8628 after 2644 ms (table move)
17-03-18 05:32:47.254 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135930 mm (DAC = 29694)
17-03-18 05:32:47.254 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.254 -07 000000591 INF: FPGA: Recv ZSGSRD 30456
17-03-18 05:32:47.264 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:47.264 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.264 -07 000000437 INF: FPGA: Recv ZSGSRD 30448
17-03-18 05:32:47.274 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.274 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.274 -07 000000591 INF: FPGA: Recv ZSGSRD 30451
17-03-18 05:32:47.284 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.284 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.284 -07 000000437 INF: FPGA: Recv ZSGSRD 30447
17-03-18 05:32:47.294 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.294 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.294 -07 000000437 INF: FPGA: Recv ZSGSRD 30446
17-03-18 05:32:47.304 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.304 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.304 -07 000000437 INF: FPGA: Recv ZSGSRD 30445
17-03-18 05:32:47.314 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.314 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.314 -07 000000591 INF: FPGA: Recv ZSGSRD 30448
17-03-18 05:32:47.324 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.324 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.324 -07 000000437 INF: FPGA: Recv ZSGSRD 30453
17-03-18 05:32:47.334 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.334 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.334 -07 000000592 INF: FPGA: Recv ZSGSRD 30452
17-03-18 05:32:47.344 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.344 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:47.344 -07 000000437 INF: FPGA: Recv ZSGSRD 30450
17-03-18 05:32:47.354 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.354 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:47.354 -07 000000437 INF: FPGA: Recv ZPIEZORD 26239
17-03-18 05:32:47.364 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:47.364 -07 000000444 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.3 V.
17-03-18 05:32:47.364 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30450 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30449 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30445 (-135.1 uncal um), Max = 30456 (-135.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:32:47.364 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30450, posNoise = 6, negNoise = 5
17-03-18 05:32:47.364 -07 000000444 INF: Z Motor: After move to -0.135930, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:47.364 -07 000000444 INF: Z Motor: Settle wait time = 2647 ms, measure time = 107 ms (allowed 150 ms), total time = 2754 ms
17-03-18 05:32:47.364 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:47.414 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2807 ms
17-03-18 05:32:47.414 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:47.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:47.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:47.414 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:47.414 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:47.414 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:47.414 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:47.414 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:47.414 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:47.424 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:47.424 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:47.434 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:32:47.434 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:32:47.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:47.484 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:47.784 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:47.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:47.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:47.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-18 05:32:47.824 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:47.824 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:47.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 389 ms overall
17-03-18 05:32:47.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:32:47.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:47.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:47.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 05:32:47.924 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:47.924 -07 000000591 INF: Autofocus start
17-03-18 05:32:47.924 -07 000000591 INF: MeasureProfile start
17-03-18 05:32:47.924 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:47.934 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:47.934 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:47.934 -07 000000591 INF: MeasureProfile done
17-03-18 05:32:47.934 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:32:47.934 -07 000000591 INF: Autofocus finished
17-03-18 05:32:48.134 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:48.134 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:48.134 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135940611727756. ----------
17-03-18 05:32:48.134 -07 000000610 INF: Cycle	138	Tile	13	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:48.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28218, sync = True, waitForSettling = True)
17-03-18 05:32:48.144 -07 000000610 INF: Z Motor: Moving to -0.129174 mm, started at -0.135941 mm, distance = 6.77 um
17-03-18 05:32:48.144 -07 000000610 INF: FPGA: Xmit ZDACW 28218\n [Z Motor]
17-03-18 05:32:48.144 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 05:32:48.154 -07 000000610 INF: FPGA: 'ZDACW 28218' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:48.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:48.154 -07 000000424 INF: FPGA: Recv ZDACR 28218
17-03-18 05:32:48.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.314 -07 000000437 INF: FPGA: Recv ZSGSRD 29401
17-03-18 05:32:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.324 -07 000000424 INF: FPGA: Recv ZSGSRD 29395
17-03-18 05:32:48.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.334 -07 000000591 INF: FPGA: Recv ZSGSRD 29396
17-03-18 05:32:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.344 -07 000000424 INF: FPGA: Recv ZSGSRD 29397
17-03-18 05:32:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.354 -07 000000382 INF: FPGA: Recv ZSGSRD 29401
17-03-18 05:32:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.364 -07 000000444 INF: FPGA: Recv ZSGSRD 29396
17-03-18 05:32:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29399
17-03-18 05:32:48.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.384 -07 000000444 INF: FPGA: Recv ZSGSRD 29403
17-03-18 05:32:48.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.404 -07 000000591 INF: FPGA: Recv ZSGSRD 29396
17-03-18 05:32:48.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:48.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:48.414 -07 000000437 INF: FPGA: Recv ZSGSRD 29393
17-03-18 05:32:48.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:48.424 -07 000000591 INF: FPGA: Recv ZPIEZORD 24890
17-03-18 05:32:48.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:48.434 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.9 V.
17-03-18 05:32:48.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29398 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29396 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29393 (-128.4 uncal um), Max = 29403 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:32:48.434 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29398, posNoise = 5, negNoise = 5
17-03-18 05:32:48.434 -07 000000610 INF: Z Motor: After move to -0.129174, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:48.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:32:48.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:48.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:48.434 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:48.434 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:48.434 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:48.434 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:48.434 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:48.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:48.434 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:32:48.434 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:48.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:48.434 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:48.444 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:48.444 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:48.444 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:48.444 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:48.454 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:32:48.454 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:32:48.454 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:32:48.454 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:32:48.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28395 150\n [Camera]
17-03-18 05:32:48.654 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:48.714 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.033041,
17-03-18 05:32:49.094 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:49.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:49.104 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:49.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:49.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:49.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:49.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:49.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 05:32:49.104 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:49.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:32:49.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28395 825
17-03-18 05:32:49.444 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:49.504 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:32:49.504 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:32:49.504 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:49.504 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:32:49.504 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:32:49.504 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:49.504 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:49.504 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:32:49.504 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:49.514 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:32:49.654 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:49.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:49.654 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:49.654 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:49.654 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 05:32:49.654 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:49.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:49.654 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:49.654 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:49.654 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:32:49.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:49.844 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:49.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28395 150' command took 2 ms to send, 1376 ms to get response, and 1387 ms overall
17-03-18 05:32:49.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:49.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129182340554624. ------
17-03-18 05:32:49.854 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:49.854 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13553 mm
17-03-18 05:32:49.854 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:49.854 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:49.854 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:32:49.854 -07 000000437 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:32:49.854 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29607, sync = True, waitForSettling = False)
17-03-18 05:32:49.854 -07 000000625 INF: Z Motor: Moving to -0.135532 mm, started at -0.129182 mm, distance = -6.35 um
17-03-18 05:32:49.864 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:32:49.864 -07 000000625 INF: FPGA: Xmit ZDACW 29607\n [Z Motor]
17-03-18 05:32:49.864 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 05:32:49.874 -07 000000625 INF: FPGA: 'ZDACW 29607' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:32:49.874 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:49.874 -07 000000581 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:32:49.884 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:49.884 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:32:49.884 -07 000000437 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:49.884 -07 000000437 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:49.884 -07 000000437 INF: Y Motor: Moving 1344 steps-20
17-03-18 05:32:49.894 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:49.894 -07 000000581 INF: FPGA: Recv ZDACR 29607
17-03-18 05:32:49.904 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:49.904 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:49.904 -07 000000625 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:32:50.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:32:50.054 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:32:50.054 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:50.054 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:32:50.054 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:32:50.054 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:50.054 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:50.054 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:50.054 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:50.064 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:32:50.084 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:50.084 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:32:50.274 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:32:50.274 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:32:50.334 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:50.344 -07 000000585 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:32:50.344 -07 000000437 INF: FPGA: 'YRDPOS' command took 7 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:50.344 -07 000000437 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:50.344 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:32:50.344 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 05:32:51.294 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:51.294 -07 000000579 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:32:51.304 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:51.304 -07 000000437 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:51.334 -07 000000437 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:51.334 -07 000000437 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:51.334 -07 000000437 INF: Y Motor: Moved to 70.6880 after 1478 ms (table move)
17-03-18 05:32:51.344 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135532 mm (DAC = 29607)
17-03-18 05:32:51.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.344 -07 000000569 INF: FPGA: Recv ZSGSRD 30393
17-03-18 05:32:51.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.354 -07 000000012 INF: FPGA: Recv ZSGSRD 30385
17-03-18 05:32:51.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.364 -07 000000012 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:32:51.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.374 -07 000000569 INF: FPGA: Recv ZSGSRD 30388
17-03-18 05:32:51.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.384 -07 000000012 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:32:51.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30390
17-03-18 05:32:51.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.404 -07 000000569 INF: FPGA: Recv ZSGSRD 30390
17-03-18 05:32:51.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:32:51.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.424 -07 000000455 INF: FPGA: Recv ZSGSRD 30390
17-03-18 05:32:51.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:51.434 -07 000000012 INF: FPGA: Recv ZSGSRD 30382
17-03-18 05:32:51.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.444 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:51.444 -07 000000012 INF: FPGA: Recv ZPIEZORD 26184
17-03-18 05:32:51.454 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:51.454 -07 000000382 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.2 V.
17-03-18 05:32:51.454 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30387 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30388 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30381 (-134.7 uncal um), Max = 30393 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:32:51.454 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30387, posNoise = 6, negNoise = 6
17-03-18 05:32:51.454 -07 000000382 INF: Z Motor: After move to -0.135532, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:51.454 -07 000000382 INF: Z Motor: Settle wait time = 1481 ms, measure time = 111 ms (allowed 150 ms), total time = 1592 ms
17-03-18 05:32:51.454 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:51.494 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 05:32:51.494 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:51.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:51.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:51.494 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:51.494 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:51.494 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:51.494 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:51.494 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:32:51.494 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:51.504 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:51.504 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:51.504 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:32:51.504 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:32:51.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:51.554 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:51.774 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:51.854 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:51.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:51.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:51.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 05:32:51.894 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:51.894 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:51.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:32:51.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 05:32:51.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:51.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:32:51.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 05:32:51.994 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:51.994 -07 000000569 INF: Autofocus start
17-03-18 05:32:51.994 -07 000000569 INF: MeasureProfile start
17-03-18 05:32:51.994 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:52.004 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:32:52.004 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:52.004 -07 000000569 INF: MeasureProfile done
17-03-18 05:32:52.004 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:32:52.004 -07 000000569 INF: Autofocus finished
17-03-18 05:32:52.204 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:52.204 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:32:52.204 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135535886362825. ----------
17-03-18 05:32:52.204 -07 000000610 INF: Cycle	138	Tile	14	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:52.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28114, sync = True, waitForSettling = True)
17-03-18 05:32:52.214 -07 000000610 INF: Z Motor: Moving to -0.128698 mm, started at -0.135536 mm, distance = 6.84 um
17-03-18 05:32:52.214 -07 000000610 INF: FPGA: Xmit ZDACW 28114\n [Z Motor]
17-03-18 05:32:52.214 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:32:52.224 -07 000000610 INF: FPGA: 'ZDACW 28114' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:52.224 -07 000000012 INF: FPGA: Recv ZDACR 28114
17-03-18 05:32:52.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.384 -07 000000569 INF: FPGA: Recv ZSGSRD 29323
17-03-18 05:32:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.394 -07 000000569 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:32:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.404 -07 000000012 INF: FPGA: Recv ZSGSRD 29319
17-03-18 05:32:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.414 -07 000000382 INF: FPGA: Recv ZSGSRD 29319
17-03-18 05:32:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.424 -07 000000382 INF: FPGA: Recv ZSGSRD 29326
17-03-18 05:32:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29321
17-03-18 05:32:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.444 -07 000000012 INF: FPGA: Recv ZSGSRD 29321
17-03-18 05:32:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.454 -07 000000012 INF: FPGA: Recv ZSGSRD 29325
17-03-18 05:32:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.464 -07 000000585 INF: FPGA: Recv ZSGSRD 29324
17-03-18 05:32:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:52.474 -07 000000585 INF: FPGA: Recv ZSGSRD 29321
17-03-18 05:32:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:52.484 -07 000000581 INF: FPGA: Recv ZPIEZORD 24774
17-03-18 05:32:52.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:52.494 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -10.0 V.
17-03-18 05:32:52.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29322 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29319 (-127.9 uncal um), Max = 29326 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:32:52.494 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29322, posNoise = 4, negNoise = 3
17-03-18 05:32:52.494 -07 000000610 INF: Z Motor: After move to -0.128698, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:52.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:32:52.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:52.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:52.494 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:52.494 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:52.494 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:52.494 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:52.494 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:52.494 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:52.494 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:52.494 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:52.494 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:52.494 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:52.504 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:32:52.504 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:52.504 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:52.504 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:52.514 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:32:52.514 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:32:52.514 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:32:52.514 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:32:52.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28291 150\n [Camera]
17-03-18 05:32:52.714 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:53.154 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:53.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:53.164 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:53.164 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:53.164 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:32:53.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:53.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:53.164 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:53.164 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:53.164 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:32:53.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28291 825
17-03-18 05:32:53.504 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:53.544 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:32:53.544 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:32:53.544 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:53.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:32:53.554 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:32:53.554 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:53.554 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:53.554 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:53.554 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:32:53.564 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:32:53.714 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:53.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:53.714 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:53.714 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:53.714 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 05:32:53.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:53.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:53.714 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:53.714 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:53.714 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:32:53.904 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-18 05:32:53.904 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:53.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28291 150' command took 4 ms to send, 1376 ms to get response, and 1387 ms overall
17-03-18 05:32:53.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:53.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.12869410043185. ------
17-03-18 05:32:53.914 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:53.914 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13547 mm
17-03-18 05:32:53.914 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:53.914 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:53.914 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29593, sync = True, waitForSettling = False)
17-03-18 05:32:53.914 -07 000000480 INF: Z Motor: Moving to -0.135468 mm, started at -0.128694 mm, distance = -6.77 um
17-03-18 05:32:53.914 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:32:53.914 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:32:53.924 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:53.924 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:53.924 -07 000000382 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:32:53.934 -07 000000480 INF: FPGA: Xmit ZDACW 29593\n [Z Motor]
17-03-18 05:32:53.934 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:32:53.934 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:53.934 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:53.934 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:32:53.934 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:32:53.944 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:53.944 -07 000000480 INF: FPGA: 'ZDACW 29593' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:32:53.954 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:53.964 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:53.964 -07 000000561 INF: FPGA: Recv ZDACR 29593
17-03-18 05:32:53.974 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:53.974 -07 000000480 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 05:32:54.074 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.018051,
17-03-18 05:32:54.114 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:32:54.114 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:32:54.114 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:54.114 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:32:54.114 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:32:54.114 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:54.124 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:32:54.124 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:54.124 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:32:54.124 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:32:54.144 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:54.144 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:32:54.324 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:32:54.324 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:32:54.384 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:54.384 -07 000000585 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:32:54.394 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:54.394 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:54.394 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:32:54.394 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 05:32:55.344 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:55.344 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:32:55.354 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.354 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:55.384 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:55.384 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:55.384 -07 000000569 INF: Y Motor: Moved to 71.5186 after 1463 ms (table move)
17-03-18 05:32:55.384 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135468 mm (DAC = 29593)
17-03-18 05:32:55.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.384 -07 000000581 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:32:55.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:32:55.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.394 -07 000000444 INF: FPGA: Recv ZSGSRD 30373
17-03-18 05:32:55.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.404 -07 000000444 INF: FPGA: Recv ZSGSRD 30384
17-03-18 05:32:55.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.414 -07 000000581 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:32:55.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.424 -07 000000444 INF: FPGA: Recv ZSGSRD 30373
17-03-18 05:32:55.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.434 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.434 -07 000000581 INF: FPGA: Recv ZSGSRD 30378
17-03-18 05:32:55.444 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.444 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.444 -07 000000444 INF: FPGA: Recv ZSGSRD 30370
17-03-18 05:32:55.454 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.454 -07 000000581 INF: FPGA: Recv ZSGSRD 30375
17-03-18 05:32:55.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:32:55.464 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.464 -07 000000444 INF: FPGA: Recv ZSGSRD 30366
17-03-18 05:32:55.474 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.474 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:55.474 -07 000000444 INF: FPGA: Recv ZSGSRD 30379
17-03-18 05:32:55.484 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.484 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:55.484 -07 000000444 INF: FPGA: Recv ZPIEZORD 26209
17-03-18 05:32:55.494 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:55.494 -07 000000424 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.2 V.
17-03-18 05:32:55.494 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30376 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30376 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30366 (-134.6 uncal um), Max = 30384 (-134.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:32:55.494 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30376, posNoise = 8, negNoise = 10
17-03-18 05:32:55.494 -07 000000424 INF: Z Motor: After move to -0.135468, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:55.494 -07 000000424 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:32:55.494 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:32:55.544 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 05:32:55.544 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:32:55.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:55.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:55.544 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:55.544 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:55.544 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:32:55.544 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:55.544 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:55.544 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:32:55.554 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:55.554 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:32:55.554 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:32:55.554 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:32:55.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:32:55.604 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:32:55.904 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:32:55.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:32:55.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:32:55.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 05:32:55.944 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:32:55.944 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:32:55.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:32:56.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:32:56.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:56.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:32:56.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:32:56.044 -07 000000444 INF: Autofocus start
17-03-18 05:32:56.044 -07 000000444 INF: MeasureProfile start
17-03-18 05:32:56.044 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:56.054 -07 000000444 INF: MeasureProfile done
17-03-18 05:32:56.054 -07 000000444 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:32:56.054 -07 000000444 INF: Autofocus finished
17-03-18 05:32:56.054 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:56.054 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-18 05:32:56.064 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:32:56.264 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:32:56.264 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 05:32:56.264 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135465220029266. ----------
17-03-18 05:32:56.274 -07 000000610 INF: Cycle	138	Tile	15	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:32:56.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28087, sync = True, waitForSettling = True)
17-03-18 05:32:56.274 -07 000000610 INF: Z Motor: Moving to -0.128574 mm, started at -0.135465 mm, distance = 6.89 um
17-03-18 05:32:56.274 -07 000000610 INF: FPGA: Xmit ZDACW 28087\n [Z Motor]
17-03-18 05:32:56.274 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:32:56.284 -07 000000610 INF: FPGA: 'ZDACW 28087' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:32:56.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:56.284 -07 000000581 INF: FPGA: Recv ZDACR 28087
17-03-18 05:32:56.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:32:56.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.444 -07 000000581 INF: FPGA: Recv ZSGSRD 29305
17-03-18 05:32:56.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:56.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.454 -07 000000444 INF: FPGA: Recv ZSGSRD 29299
17-03-18 05:32:56.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.464 -07 000000592 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:32:56.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.474 -07 000000592 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:32:56.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.484 -07 000000592 INF: FPGA: Recv ZSGSRD 29308
17-03-18 05:32:56.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.494 -07 000000592 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:32:56.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.504 -07 000000581 INF: FPGA: Recv ZSGSRD 29303
17-03-18 05:32:56.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.514 -07 000000592 INF: FPGA: Recv ZSGSRD 29304
17-03-18 05:32:56.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.524 -07 000000444 INF: FPGA: Recv ZSGSRD 29306
17-03-18 05:32:56.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:56.534 -07 000000502 INF: FPGA: Recv ZSGSRD 29307
17-03-18 05:32:56.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:32:56.544 -07 000000444 INF: FPGA: Recv ZPIEZORD 24806
17-03-18 05:32:56.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:56.554 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.9 V.
17-03-18 05:32:56.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29305 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29306 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29299 (-127.8 uncal um), Max = 29308 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:32:56.554 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29305, posNoise = 3, negNoise = 6
17-03-18 05:32:56.554 -07 000000610 INF: Z Motor: After move to -0.128574, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:32:56.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:32:56.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:32:56.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:32:56.554 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:32:56.554 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:32:56.554 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:32:56.554 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:32:56.554 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:32:56.554 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:32:56.554 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:32:56.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:32:56.554 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:32:56.554 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:32:56.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:32:56.564 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:32:56.564 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:32:56.564 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:32:56.564 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:32:56.564 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:56.564 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:32:56.564 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:32:56.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28264 150\n [Camera]
17-03-18 05:32:56.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:32:56.774 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:32:56.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:32:57.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:32:57.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:32:57.214 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:57.214 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:57.214 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 05:32:57.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:32:57.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:32:57.214 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:57.214 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:57.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 05:32:57.404 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28264 825
17-03-18 05:32:57.554 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:32:57.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:32:57.614 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:32:57.614 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:57.614 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:57.614 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:32:57.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:32:57.614 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:32:57.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:57.624 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:57.624 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:32:57.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:32:57.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:32:57.764 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:32:57.764 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:32:57.774 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:32:57.774 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:32:57.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:32:57.774 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:32:57.774 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:32:57.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:32:57.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:32:57.964 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:32:57.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28264 150' command took 2 ms to send, 1380 ms to get response, and 1387 ms overall
17-03-18 05:32:57.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:32:57.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.12858488882544. ------
17-03-18 05:32:57.964 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13492 mm
17-03-18 05:32:57.964 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:32:57.964 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:32:57.964 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:32:57.964 -07 000000581 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:32:57.974 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:57.974 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29474, sync = True, waitForSettling = False)
17-03-18 05:32:57.974 -07 000000502 INF: Z Motor: Moving to -0.134923 mm, started at -0.128585 mm, distance = -6.34 um
17-03-18 05:32:57.974 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:32:57.974 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:32:57.974 -07 000000467 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:32:57.984 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:32:57.984 -07 000000581 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:57.984 -07 000000581 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:32:57.984 -07 000000581 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:32:57.984 -07 000000502 INF: FPGA: Xmit ZDACW 29474\n [Z Motor]
17-03-18 05:32:57.984 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:32:57.994 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:32:57.994 -07 000000502 INF: FPGA: 'ZDACW 29474' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:32:58.004 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:32:58.014 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:32:58.014 -07 000000437 INF: FPGA: Recv ZDACR 29474
17-03-18 05:32:58.024 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:32:58.024 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 05:32:58.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:32:58.174 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:32:58.174 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:58.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:32:58.174 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:32:58.174 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:32:58.174 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:32:58.184 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:32:58.184 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:32:58.184 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:32:58.194 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:32:58.194 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 05:32:58.374 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 05:32:58.374 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:32:58.424 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:58.434 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:32:58.434 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:32:58.434 -07 000000581 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:58.434 -07 000000581 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 05:32:58.434 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 05:32:59.384 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:32:59.384 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:32:59.394 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:32:59.394 -07 000000581 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:32:59.424 -07 000000581 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:32:59.424 -07 000000581 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:32:59.424 -07 000000581 INF: Y Motor: Moved to 72.3491 after 1452 ms (table move)
17-03-18 05:32:59.424 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134923 mm (DAC = 29474)
17-03-18 05:32:59.434 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:32:59.434 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.02213,
17-03-18 05:32:59.434 -07 000000437 INF: FPGA: Recv ZSGSRD 30292
17-03-18 05:32:59.444 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:32:59.444 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.314 -07 000000579 INF: FPGA: Recv ZSGSRD 30293
17-03-18 05:33:00.314 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 868 ms to get response, and 878 ms overall
17-03-18 05:33:00.314 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.334 -07 000000569 INF: FPGA: Recv ZSGSRD 30295
17-03-18 05:33:00.334 -07 000000592 INF: FPGA: 'ZSGSRD' command took 9 ms to send, 1 ms to get response, and 12 ms overall
17-03-18 05:33:00.354 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.354 -07 000000444 INF: FPGA: Recv ZSGSRD 30291
17-03-18 05:33:00.364 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:33:00.364 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.364 -07 000000501 INF: FPGA: Recv ZSGSRD 30284
17-03-18 05:33:00.374 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:00.384 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30297
17-03-18 05:33:00.394 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:33:00.394 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30292
17-03-18 05:33:00.404 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:00.404 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30287
17-03-18 05:33:00.414 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:00.414 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30293
17-03-18 05:33:00.424 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:00.424 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:00.424 -07 000000561 INF: FPGA: Recv ZSGSRD 30298
17-03-18 05:33:00.434 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:00.434 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:00.434 -07 000000569 INF: FPGA: Recv ZPIEZORD 26126
17-03-18 05:33:00.444 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:00.444 -07 000000592 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.2 V.
17-03-18 05:33:00.444 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30292 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30292 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30284 (-134.1 uncal um), Max = 30298 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:33:00.444 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30292, posNoise = 6, negNoise = 8
17-03-18 05:33:00.444 -07 000000592 INF: Z Motor: After move to -0.134923, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:00.444 -07 000000592 INF: Z Motor: Settle wait time = 1454 ms, measure time = 1015 ms (allowed 150 ms), total time = 2469 ms
17-03-18 05:33:00.444 -07 000000592 INF: Z Motor: Warning: Actual position measuring time = 1015 ms, longer than max expected time of 150 ms
17-03-18 05:33:00.444 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2473 ms
17-03-18 05:33:00.444 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:33:00.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:00.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:00.444 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:00.444 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:00.444 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:33:00.444 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:00.454 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:33:00.454 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:33:00.454 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:33:00.454 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:33:00.464 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:33:00.464 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:33:00.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:33:00.514 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:33:00.814 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:33:00.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:33:00.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:33:00.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 05:33:00.854 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:33:00.854 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 05:33:00.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:33:00.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:33:00.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:00.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:33:00.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:33:00.954 -07 000000444 INF: Autofocus start
17-03-18 05:33:00.954 -07 000000444 INF: MeasureProfile start
17-03-18 05:33:00.954 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:00.954 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:00.964 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:33:00.964 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:33:00.964 -07 000000444 INF: MeasureProfile done
17-03-18 05:33:00.964 -07 000000444 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:33:00.964 -07 000000444 INF: Autofocus finished
17-03-18 05:33:01.164 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:33:01.164 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:33:01.164 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.134925586209358. ----------
17-03-18 05:33:01.174 -07 000000610 INF: Cycle	138	Tile	16	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:33:01.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27998, sync = True, waitForSettling = True)
17-03-18 05:33:01.174 -07 000000610 INF: Z Motor: Moving to -0.128167 mm, started at -0.134926 mm, distance = 6.76 um
17-03-18 05:33:01.174 -07 000000610 INF: FPGA: Xmit ZDACW 27998\n [Z Motor]
17-03-18 05:33:01.174 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:33:01.184 -07 000000610 INF: FPGA: 'ZDACW 27998' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:33:01.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:01.184 -07 000000501 INF: FPGA: Recv ZDACR 27998
17-03-18 05:33:01.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:33:01.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.344 -07 000000592 INF: FPGA: Recv ZSGSRD 29243
17-03-18 05:33:01.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:01.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.354 -07 000000501 INF: FPGA: Recv ZSGSRD 29238
17-03-18 05:33:01.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.364 -07 000000625 INF: FPGA: Recv ZSGSRD 29238
17-03-18 05:33:01.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.374 -07 000000437 INF: FPGA: Recv ZSGSRD 29247
17-03-18 05:33:01.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.384 -07 000000561 INF: FPGA: Recv ZSGSRD 29246
17-03-18 05:33:01.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29247
17-03-18 05:33:01.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.404 -07 000000561 INF: FPGA: Recv ZSGSRD 29234
17-03-18 05:33:01.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.414 -07 000000625 INF: FPGA: Recv ZSGSRD 29238
17-03-18 05:33:01.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.424 -07 000000592 INF: FPGA: Recv ZSGSRD 29240
17-03-18 05:33:01.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:01.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29239
17-03-18 05:33:01.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:01.444 -07 000000592 INF: FPGA: Recv ZPIEZORD 24716
17-03-18 05:33:01.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:01.454 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.9 V.
17-03-18 05:33:01.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29241 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29240 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29234 (-127.4 uncal um), Max = 29247 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:33:01.454 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29241, posNoise = 6, negNoise = 7
17-03-18 05:33:01.454 -07 000000610 INF: Z Motor: After move to -0.128167, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:01.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:33:01.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:01.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:01.454 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:01.454 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:33:01.454 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:33:01.454 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:01.454 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:33:01.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:01.454 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:33:01.454 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:33:01.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:33:01.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:33:01.464 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:33:01.464 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:33:01.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:33:01.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:33:01.474 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:33:01.474 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:33:01.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:33:01.474 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:33:01.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28175 150\n [Camera]
17-03-18 05:33:01.674 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:33:01.774 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:01.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:33:02.114 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:33:02.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:33:02.114 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:02.114 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:02.114 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:33:02.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:33:02.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:33:02.114 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:02.114 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:02.114 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:33:02.304 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28175 825
17-03-18 05:33:02.454 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:33:02.514 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:33:02.514 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:33:02.514 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:02.514 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:33:02.514 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:33:02.514 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:02.524 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:02.524 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:33:02.524 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:02.524 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:33:02.664 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:33:02.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:33:02.674 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:02.674 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:02.674 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:33:02.674 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:33:02.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:33:02.674 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:02.674 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:02.674 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:33:02.864 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:33:02.864 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:33:02.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28175 150' command took 2 ms to send, 1381 ms to get response, and 1387 ms overall
17-03-18 05:33:02.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:33:02.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128173739248367. ------
17-03-18 05:33:02.864 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:02.864 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13478 mm
17-03-18 05:33:02.864 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:33:02.874 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:02.874 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:33:02.874 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:33:02.874 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:33:02.874 -07 000000591 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:33:02.874 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29443, sync = True, waitForSettling = False)
17-03-18 05:33:02.874 -07 000000569 INF: Z Motor: Moving to -0.134781 mm, started at -0.128174 mm, distance = -6.61 um
17-03-18 05:33:02.884 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:02.884 -07 000000592 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:33:02.894 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:33:02.894 -07 000000569 INF: FPGA: Xmit ZDACW 29443\n [Z Motor]
17-03-18 05:33:02.894 -07 000000591 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:02.894 -07 000000591 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:33:02.894 -07 000000591 INF: Y Motor: Moving 1350 steps-28
17-03-18 05:33:02.894 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 05:33:02.904 -07 000000569 INF: FPGA: 'ZDACW 29443' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:33:02.904 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:02.904 -07 000000501 INF: FPGA: Recv ZDACR 29443
17-03-18 05:33:02.914 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:33:02.914 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:02.914 -07 000000569 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 05:33:03.064 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:33:03.064 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:33:03.064 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:03.064 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:33:03.064 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:33:03.064 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:03.064 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:03.074 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:33:03.074 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:33:03.074 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:33:03.074 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:33:03.074 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 05:33:03.284 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:33:03.284 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:33:03.344 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:03.344 -07 000000467 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:33:03.354 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:33:03.354 -07 000000591 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:03.354 -07 000000591 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:33:03.354 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 05:33:04.304 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:04.304 -07 000000625 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:33:04.314 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:04.314 -07 000000591 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:04.354 -07 000000591 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:33:04.354 -07 000000591 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:33:04.354 -07 000000591 INF: Y Motor: Moved to 73.1753 after 1478 ms (table move)
17-03-18 05:33:04.354 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134781 mm (DAC = 29443)
17-03-18 05:33:04.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.354 -07 000000502 INF: FPGA: Recv ZSGSRD 30274
17-03-18 05:33:04.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:33:04.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.364 -07 000000561 INF: FPGA: Recv ZSGSRD 30269
17-03-18 05:33:04.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.374 -07 000000444 INF: FPGA: Recv ZSGSRD 30270
17-03-18 05:33:04.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.384 -07 000000592 INF: FPGA: Recv ZSGSRD 30269
17-03-18 05:33:04.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.394 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30264
17-03-18 05:33:04.404 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.404 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.404 -07 000000561 INF: FPGA: Recv ZSGSRD 30270
17-03-18 05:33:04.414 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30270
17-03-18 05:33:04.424 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.424 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.424 -07 000000592 INF: FPGA: Recv ZSGSRD 30275
17-03-18 05:33:04.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.434 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.434 -07 000000606 INF: FPGA: Recv ZSGSRD 30271
17-03-18 05:33:04.444 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:04.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30267
17-03-18 05:33:04.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.454 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:04.454 -07 000000467 INF: FPGA: Recv ZPIEZORD 26090
17-03-18 05:33:04.464 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:04.464 -07 000000579 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -9.2 V.
17-03-18 05:33:04.464 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30270 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30270 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30264 (-134.0 uncal um), Max = 30275 (-134.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:33:04.464 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30270, posNoise = 5, negNoise = 6
17-03-18 05:33:04.464 -07 000000579 INF: Z Motor: After move to -0.134781, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:04.464 -07 000000579 INF: Z Motor: Settle wait time = 1482 ms, measure time = 105 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:33:04.464 -07 000000579 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:33:04.514 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1642 ms
17-03-18 05:33:04.514 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:33:04.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:04.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:04.514 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:04.514 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:33:04.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:04.514 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:04.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:33:04.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:33:04.524 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:33:04.524 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:33:04.524 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:33:04.524 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:33:04.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:33:04.574 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:33:04.874 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:33:04.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:33:04.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:33:04.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 05:33:04.914 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:33:04.914 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:33:04.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:33:04.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:33:04.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:04.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:33:04.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:33:05.014 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:05.014 -07 000000581 INF: Autofocus start
17-03-18 05:33:05.014 -07 000000581 INF: MeasureProfile start
17-03-18 05:33:05.014 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:05.024 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:33:05.024 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:33:05.024 -07 000000581 INF: MeasureProfile done
17-03-18 05:33:05.024 -07 000000581 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:33:05.024 -07 000000581 INF: Autofocus finished
17-03-18 05:33:05.224 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:33:05.224 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:33:05.224 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134784253542239. ----------
17-03-18 05:33:05.224 -07 000000610 INF: Cycle	138	Tile	17	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:33:05.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27967, sync = True, waitForSettling = True)
17-03-18 05:33:05.234 -07 000000610 INF: Z Motor: Moving to -0.128025 mm, started at -0.134784 mm, distance = 6.76 um
17-03-18 05:33:05.234 -07 000000610 INF: FPGA: Xmit ZDACW 27967\n [Z Motor]
17-03-18 05:33:05.234 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 05:33:05.244 -07 000000610 INF: FPGA: 'ZDACW 27967' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:05.244 -07 000000012 INF: FPGA: Recv ZDACR 27967
17-03-18 05:33:05.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:33:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.404 -07 000000606 INF: FPGA: Recv ZSGSRD 29219
17-03-18 05:33:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.414 -07 000000629 INF: FPGA: Recv ZSGSRD 29217
17-03-18 05:33:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.424 -07 000000592 INF: FPGA: Recv ZSGSRD 29217
17-03-18 05:33:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.434 -07 000000012 INF: FPGA: Recv ZSGSRD 29217
17-03-18 05:33:05.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.444 -07 000000569 INF: FPGA: Recv ZSGSRD 29217
17-03-18 05:33:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.454 -07 000000581 INF: FPGA: Recv ZSGSRD 29215
17-03-18 05:33:05.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.464 -07 000000502 INF: FPGA: Recv ZSGSRD 29226
17-03-18 05:33:05.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.474 -07 000000579 INF: FPGA: Recv ZSGSRD 29222
17-03-18 05:33:05.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.484 -07 000000382 INF: FPGA: Recv ZSGSRD 29212
17-03-18 05:33:05.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:05.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29218
17-03-18 05:33:05.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:05.504 -07 000000569 INF: FPGA: Recv ZPIEZORD 24692
17-03-18 05:33:05.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:05.514 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.9 V.
17-03-18 05:33:05.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29218 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29217 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29212 (-127.2 uncal um), Max = 29226 (-127.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:33:05.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29218, posNoise = 8, negNoise = 6
17-03-18 05:33:05.514 -07 000000610 INF: Z Motor: After move to -0.128025, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:05.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:33:05.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:05.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:05.514 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:05.514 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:33:05.514 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:33:05.514 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:05.514 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:33:05.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:05.514 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:33:05.514 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:33:05.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:33:05.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:33:05.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:33:05.514 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:33:05.514 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:33:05.514 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:33:05.534 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:33:05.534 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:33:05.534 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:33:05.534 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:33:05.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28144 150\n [Camera]
17-03-18 05:33:05.704 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.000345,
17-03-18 05:33:05.734 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:33:06.184 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-18 05:33:06.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-18 05:33:06.184 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:06.184 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:06.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:33:06.184 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-18 05:33:06.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-18 05:33:06.184 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:06.184 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:06.184 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:33:06.374 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28144 825
17-03-18 05:33:06.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:33:06.584 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:33:06.584 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:33:06.584 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:06.584 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:33:06.584 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:33:06.584 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:06.584 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:06.584 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:33:06.584 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:06.594 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:33:06.734 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:33:06.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:33:06.734 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:06.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:33:06.874 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:06.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:33:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:33:06.874 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:06.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:33:06.874 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:06.884 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:06.884 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:33:06.924 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:33:06.924 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:33:06.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28144 150' command took 2 ms to send, 1375 ms to get response, and 1386 ms overall
17-03-18 05:33:06.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:33:06.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.128025982369107. ------
17-03-18 05:33:06.934 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:06.934 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13394 mm
17-03-18 05:33:06.934 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:33:06.934 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:33:06.934 -07 000000592 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:33:06.934 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:06.934 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29259, sync = True, waitForSettling = False)
17-03-18 05:33:06.934 -07 000000501 INF: Z Motor: Moving to -0.133939 mm, started at -0.128026 mm, distance = -5.91 um
17-03-18 05:33:06.944 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:33:06.944 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:06.944 -07 000000606 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:33:06.954 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:33:06.954 -07 000000592 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:06.954 -07 000000592 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:33:06.954 -07 000000592 INF: Y Motor: Moving 1356 steps-35
17-03-18 05:33:06.954 -07 000000501 INF: FPGA: Xmit ZDACW 29259\n [Z Motor]
17-03-18 05:33:06.954 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:33:06.964 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:33:06.964 -07 000000501 INF: FPGA: 'ZDACW 29259' command took 3 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:33:06.974 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:33:06.984 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:06.984 -07 000000502 INF: FPGA: Recv ZDACR 29259
17-03-18 05:33:06.994 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:33:06.994 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 05:33:07.164 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:33:07.164 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:33:07.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:33:07.274 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:33:07.274 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:07.274 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:33:07.274 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:33:07.274 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:07.284 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:07.284 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:07.284 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-18 05:33:07.294 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:33:07.344 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:33:07.344 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:33:07.394 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:07.394 -07 000000569 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:33:07.404 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:07.404 -07 000000592 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:07.404 -07 000000592 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:33:07.404 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.145 mm/sec
17-03-18 05:33:08.354 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:08.354 -07 000000467 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:33:08.364 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:08.364 -07 000000592 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:08.384 -07 000000592 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:33:08.384 -07 000000592 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:33:08.384 -07 000000592 INF: Y Motor: Moved to 74.0073 after 1451 ms (table move)
17-03-18 05:33:08.384 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133939 mm (DAC = 29259)
17-03-18 05:33:08.384 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.394 -07 000000480 INF: FPGA: Recv ZSGSRD 30137
17-03-18 05:33:08.394 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 05:33:08.394 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.394 -07 000000561 INF: FPGA: Recv ZSGSRD 30129
17-03-18 05:33:08.404 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:33:08.404 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.404 -07 000000591 INF: FPGA: Recv ZSGSRD 30133
17-03-18 05:33:08.414 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.414 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.414 -07 000000592 INF: FPGA: Recv ZSGSRD 30142
17-03-18 05:33:08.424 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.424 -07 000000382 INF: FPGA: Recv ZSGSRD 30133
17-03-18 05:33:08.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30138
17-03-18 05:33:08.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.444 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.444 -07 000000480 INF: FPGA: Recv ZSGSRD 30139
17-03-18 05:33:08.454 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.454 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.454 -07 000000480 INF: FPGA: Recv ZSGSRD 30143
17-03-18 05:33:08.464 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.464 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.464 -07 000000591 INF: FPGA: Recv ZSGSRD 30142
17-03-18 05:33:08.474 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.474 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:08.474 -07 000000480 INF: FPGA: Recv ZSGSRD 30139
17-03-18 05:33:08.484 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.484 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:08.484 -07 000000561 INF: FPGA: Recv ZPIEZORD 25953
17-03-18 05:33:08.494 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:08.494 -07 000000581 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.465 V. Piezo Error = -9.2 V.
17-03-18 05:33:08.494 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30138 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30138 (-133.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30129 (-133.1 uncal um), Max = 30143 (-133.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:33:08.494 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30138, posNoise = 5, negNoise = 9
17-03-18 05:33:08.494 -07 000000581 INF: Z Motor: After move to -0.133939, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:08.494 -07 000000581 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:33:08.494 -07 000000581 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:33:08.544 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 05:33:08.544 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:33:08.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:08.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:08.544 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:08.544 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:08.544 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:33:08.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:08.544 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:33:08.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:33:08.554 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:33:08.554 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:33:08.554 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:33:08.554 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:33:08.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:33:08.604 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:33:08.904 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:33:08.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:33:08.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:33:08.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:33:08.944 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:33:08.944 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:33:08.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 388 ms overall
17-03-18 05:33:09.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:33:09.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:09.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:33:09.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:33:09.044 -07 000000569 INF: Autofocus start
17-03-18 05:33:09.044 -07 000000569 INF: MeasureProfile start
17-03-18 05:33:09.044 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:09.044 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:09.054 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:33:09.054 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:33:09.054 -07 000000569 INF: MeasureProfile done
17-03-18 05:33:09.054 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:33:09.054 -07 000000569 INF: Autofocus finished
17-03-18 05:33:09.254 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:33:09.254 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:33:09.254 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.133936257539527. ----------
17-03-18 05:33:09.254 -07 000000610 INF: Cycle	138	Tile	18	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:33:09.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27753, sync = True, waitForSettling = True)
17-03-18 05:33:09.264 -07 000000610 INF: Z Motor: Moving to -0.127045 mm, started at -0.133936 mm, distance = 6.89 um
17-03-18 05:33:09.264 -07 000000610 INF: FPGA: Xmit ZDACW 27753\n [Z Motor]
17-03-18 05:33:09.264 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 05:33:09.274 -07 000000610 INF: FPGA: 'ZDACW 27753' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:33:09.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:09.274 -07 000000561 INF: FPGA: Recv ZDACR 27753
17-03-18 05:33:09.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:33:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.434 -07 000000592 INF: FPGA: Recv ZSGSRD 29062
17-03-18 05:33:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:09.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.444 -07 000000592 INF: FPGA: Recv ZSGSRD 29065
17-03-18 05:33:09.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29057
17-03-18 05:33:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.464 -07 000000467 INF: FPGA: Recv ZSGSRD 29069
17-03-18 05:33:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29071
17-03-18 05:33:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29067
17-03-18 05:33:09.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:33:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.494 -07 000000501 INF: FPGA: Recv ZSGSRD 29060
17-03-18 05:33:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29064
17-03-18 05:33:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29067
17-03-18 05:33:09.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:09.524 -07 000000382 INF: FPGA: Recv ZSGSRD 29061
17-03-18 05:33:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:09.534 -07 000000502 INF: FPGA: Recv ZPIEZORD 24556
17-03-18 05:33:09.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:09.544 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.235 V. Piezo Error = -9.9 V.
17-03-18 05:33:09.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29064 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29064 (-126.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29057 (-126.2 uncal um), Max = 29071 (-126.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:33:09.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29064, posNoise = 7, negNoise = 7
17-03-18 05:33:09.544 -07 000000610 INF: Z Motor: After move to -0.127045, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:09.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:33:09.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:09.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:09.544 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:09.544 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:09.544 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:33:09.544 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:09.544 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:33:09.544 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:33:09.544 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:33:09.544 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:33:09.544 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:33:09.544 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:33:09.554 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:33:09.554 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:33:09.554 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:33:09.554 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:33:09.554 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:33:09.554 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:33:09.554 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:33:09.554 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:33:09.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 27930 150\n [Camera]
17-03-18 05:33:09.764 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:33:10.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:33:10.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:33:10.204 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:10.204 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:33:10.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:33:10.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:10.214 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:10.214 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 05:33:10.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:10.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-18 05:33:10.394 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27930 825
17-03-18 05:33:10.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:33:10.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:33:10.604 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:33:10.604 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:10.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:33:10.604 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:33:10.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:10.614 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:10.614 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:33:10.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:10.624 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:33:10.754 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:33:10.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:33:10.764 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:10.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:33:10.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:33:10.764 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:10.884 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:10.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) start.
17-03-18 05:33:10.884 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:10.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:33:10.944 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-18 05:33:10.944 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:33:10.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 27930 150' command took 2 ms to send, 1379 ms to get response, and 1388 ms overall
17-03-18 05:33:10.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:33:10.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.127036653699275. ------
17-03-18 05:33:10.954 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:10.954 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13348 mm
17-03-18 05:33:10.954 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:33:10.954 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:10.954 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29159, sync = True, waitForSettling = False)
17-03-18 05:33:10.954 -07 000000502 INF: Z Motor: Moving to -0.133481 mm, started at -0.127037 mm, distance = -6.44 um
17-03-18 05:33:10.954 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:33:10.954 -07 000000592 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:33:10.964 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:33:10.964 -07 000000502 INF: FPGA: Xmit ZDACW 29159\n [Z Motor]
17-03-18 05:33:10.964 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:33:10.974 -07 000000502 INF: FPGA: 'ZDACW 29159' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:10.974 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:10.974 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:33:10.984 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:33:10.984 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:33:10.984 -07 000000592 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:10.984 -07 000000592 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:33:10.984 -07 000000592 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:33:10.994 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:10.994 -07 000000591 INF: FPGA: Recv ZDACR 29159
17-03-18 05:33:11.004 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:33:11.004 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:33:11.004 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:33:11.064 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.008536,
17-03-18 05:33:11.184 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:33:11.184 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:33:11.284 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:33:11.284 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:33:11.284 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:11.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:33:11.284 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:33:11.284 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:11.284 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:11.284 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 05:33:11.284 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:33:11.294 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 05:33:11.384 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:33:11.384 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-18 05:33:11.414 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:11.414 -07 000000581 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:33:11.424 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:33:11.424 -07 000000592 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:11.424 -07 000000592 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:33:11.424 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-18 05:33:11.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:11.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 137. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:33:12.374 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:12.374 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:33:12.384 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:12.384 -07 000000592 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:12.404 -07 000000592 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:33:12.404 -07 000000592 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:33:12.404 -07 000000592 INF: Y Motor: Moved to 74.8311 after 1441 ms (table move)
17-03-18 05:33:12.404 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133481 mm (DAC = 29159)
17-03-18 05:33:12.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.404 -07 000000592 INF: FPGA: Recv ZSGSRD 30075
17-03-18 05:33:12.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:33:12.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.414 -07 000000592 INF: FPGA: Recv ZSGSRD 30066
17-03-18 05:33:12.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.424 -07 000000592 INF: FPGA: Recv ZSGSRD 30072
17-03-18 05:33:12.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.434 -07 000000561 INF: FPGA: Recv ZSGSRD 30068
17-03-18 05:33:12.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.444 -07 000000561 INF: FPGA: Recv ZSGSRD 30071
17-03-18 05:33:12.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.454 -07 000000424 INF: FPGA: Recv ZSGSRD 30072
17-03-18 05:33:12.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.464 -07 000000501 INF: FPGA: Recv ZSGSRD 30066
17-03-18 05:33:12.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.474 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30066
17-03-18 05:33:12.484 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.484 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.484 -07 000000581 INF: FPGA: Recv ZSGSRD 30059
17-03-18 05:33:12.494 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.494 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:12.494 -07 000000581 INF: FPGA: Recv ZSGSRD 30072
17-03-18 05:33:12.504 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.504 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:12.504 -07 000000581 INF: FPGA: Recv ZPIEZORD 25867
17-03-18 05:33:12.514 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:12.514 -07 000000382 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.449 V. Piezo Error = -9.2 V.
17-03-18 05:33:12.514 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30069 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30059 (-132.6 uncal um), Max = 30075 (-132.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:33:12.514 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30069, posNoise = 6, negNoise = 10
17-03-18 05:33:12.514 -07 000000382 INF: Z Motor: After move to -0.133481, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:12.514 -07 000000382 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-18 05:33:12.514 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:33:12.564 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 05:33:12.564 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:33:12.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:12.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:12.564 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:12.564 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:33:12.564 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:12.564 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:12.564 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:33:12.564 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:33:12.574 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:33:12.574 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:33:12.574 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:33:12.574 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:33:12.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:33:12.624 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:33:12.924 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:33:12.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:33:12.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:33:12.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 05:33:12.964 -07 000000480 INF: FPGA: Recv @CAMSNAP 383
17-03-18 05:33:12.964 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:33:12.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 05:33:13.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:33:13.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:13.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:33:13.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:33:13.074 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:33:13.074 -07 000000591 INF: Autofocus start
17-03-18 05:33:13.074 -07 000000591 INF: MeasureProfile start
17-03-18 05:33:13.074 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:33:13.084 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:33:13.084 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:33:13.084 -07 000000591 INF: MeasureProfile done
17-03-18 05:33:13.084 -07 000000591 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:33:13.084 -07 000000591 INF: Autofocus finished
17-03-18 05:33:13.284 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:33:13.284 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:33:13.284 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133492986901745. ----------
17-03-18 05:33:13.284 -07 000000610 INF: Cycle	138	Tile	19	Exposure Settings		A	440	G	212	T	212	C	440
17-03-18 05:33:13.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27667, sync = True, waitForSettling = True)
17-03-18 05:33:13.294 -07 000000610 INF: Z Motor: Moving to -0.126651 mm, started at -0.133493 mm, distance = 6.84 um
17-03-18 05:33:13.294 -07 000000610 INF: FPGA: Xmit ZDACW 27667\n [Z Motor]
17-03-18 05:33:13.294 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 05:33:13.304 -07 000000610 INF: FPGA: 'ZDACW 27667' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:33:13.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:33:13.304 -07 000000592 INF: FPGA: Recv ZDACR 27667
17-03-18 05:33:13.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:33:13.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.464 -07 000000382 INF: FPGA: Recv ZSGSRD 29007
17-03-18 05:33:13.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29005
17-03-18 05:33:13.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:33:13.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29009
17-03-18 05:33:13.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.504 -07 000000012 INF: FPGA: Recv ZSGSRD 29005
17-03-18 05:33:13.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.514 -07 000000579 INF: FPGA: Recv ZSGSRD 29001
17-03-18 05:33:13.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.524 -07 000000569 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:33:13.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.534 -07 000000561 INF: FPGA: Recv ZSGSRD 29007
17-03-18 05:33:13.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.544 -07 000000467 INF: FPGA: Recv ZSGSRD 29010
17-03-18 05:33:13.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:33:13.554 -07 000000591 INF: FPGA: Recv ZSGSRD 29004
17-03-18 05:33:13.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:33:13.564 -07 000000382 INF: FPGA: Recv ZPIEZORD 24462
17-03-18 05:33:13.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:13.574 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.222 V. Piezo Error = -10.0 V.
17-03-18 05:33:13.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29005 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29005 (-125.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29000 (-125.9 uncal um), Max = 29010 (-125.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:33:13.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29005, posNoise = 5, negNoise = 5
17-03-18 05:33:13.574 -07 000000610 INF: Z Motor: After move to -0.126651, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:33:13.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:33:13.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:33:13.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:33:13.574 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:33:13.574 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:33:13.574 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:33:13.574 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:33:13.574 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:33:13.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:33:13.574 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:33:13.574 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:33:13.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:33:13.574 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:33:13.584 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:33:13.584 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:33:13.584 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:33:13.584 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:33:13.594 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:33:13.594 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:33:13.594 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:33:13.594 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:33:13.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 27843 150\n [Camera]
17-03-18 05:33:13.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:33:14.234 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-18 05:33:14.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-18 05:33:14.234 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:14.234 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-18 05:33:14.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-18 05:33:14.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:14.234 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:14.234 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:14.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 05:33:14.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) start.
17-03-18 05:33:14.424 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27843 825
17-03-18 05:33:14.574 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-18 05:33:14.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2305192208, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:33:14.634 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:33:14.634 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:14.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:14.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:33:14.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:33:14.634 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:33:14.634 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:14.634 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:14.644 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:33:14.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-18 05:33:14.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-18 05:33:14.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:33:14.794 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:33:14.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 05:33:14.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-18 05:33:14.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-18 05:33:14.794 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:33:14.794 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:33:14.794 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 05:33:14.984 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:33:14.984 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:33:14.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 27843 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-18 05:33:15.184 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:33:15.184 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:33:15.184 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:15.194 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:15.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:33:15.194 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:33:15.194 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:33:15.194 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:33:15.194 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:33:15.194 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:33:15.194 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:33:15.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 05:33:15.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:33:15.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 05:33:15.414 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 05:33:15.414 -07 000000610 INF: Imaging Cycle 138: ScanTilesCommand Cycle 138 time end. Duration was 170664 ms.
17-03-18 05:33:15.414 -07 000000610 INF: =================== Cycle #138 ===================
17-03-18 05:33:15.414 -07 000000610 INF: ===================  ===================
17-03-18 05:33:15.414 -07 000000591 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:33:15.414 -07 000000569 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 05:33:15.424 -07 000000591 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:33:15.424 -07 000000591 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 05:33:15.424 -07 000000591 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 138, FrontChillerTemperature: 4.008536, FrontChillerHeatSinkTemperature: 0.404063, AmbientTemperature: 18.68576, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.34093, GreenLEDSensorTemperature: 27.30014, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 05:33:15.534 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.