17-03-18 05:33:15.594 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:15.594 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 05:33:15.594 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 05:33:15.594 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:15.594 -07 000000561 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:33:15.604 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:33:15.604 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:15.604 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 05:33:15.604 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 05:33:15.604 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 05:33:15.724 -07 000000591 INF: FPGA: Recv YMVTO 154378 872
17-03-18 05:33:15.724 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 116 ms overall
17-03-18 05:33:15.724 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 05:33:15.724 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 05:33:15.724 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 05:33:16.424 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.033041,
17-03-18 05:33:16.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1939, Total=3806. Warn if over 250 bubbles per interval.
17-03-18 05:33:18.724 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:33:18.724 -07 000000561 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:33:18.734 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:33:18.734 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:33:18.754 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:33:18.754 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:33:18.754 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3161 ms
17-03-18 05:33:18.764 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 60° ===================
17-03-18 05:33:18.764 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 05:33:18.764 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 05:33:18.764 -07 000000561 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:33:18.774 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:33:18.774 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:33:18.774 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-18 05:33:18.784 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:33:18.784 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 60° ===================
17-03-18 05:33:18.784 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:18.784 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:33:18.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:18.814 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:33:18.814 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 05:33:18.814 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:33:19.114 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:33:19.134 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:33:19.134 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:33:19.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:19.204 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:33:19.204 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:33:19.304 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:19.304 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:33:19.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:19.334 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:33:19.334 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:33:19.334 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:33:19.464 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:33:19.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:21.774 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 05:33:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1867, R2=1940, Total=3807. Warn if over 250 bubbles per interval.
17-03-18 05:33:21.784 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.999021,
17-03-18 05:33:22.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:22.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:23.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:23.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:23.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:23.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:23.564 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:33:23.564 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:23.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:23.724 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:33:23.724 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:33:23.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:23.884 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:33:23.884 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:33:23.884 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:33:24.014 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:33:24.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:24.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:24.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:24.504 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:33:24.504 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:25.724 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:33:25.724 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 05:33:25.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:25.744 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:33:25.744 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 05:33:25.744 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 05:33:25.884 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:33:25.904 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 05:33:25.904 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 05:33:25.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:25.974 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:33:25.974 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:33:26.074 -07 000000610 INF: =================== Cycle #139, Pumping Reagent CMS (4) ===================
17-03-18 05:33:26.074 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:33:26.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:26.104 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:33:26.104 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:33:26.104 -07 000000610 INF: =================== Cycle #139, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 05:33:26.234 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:33:26.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:26.774 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-18 05:33:26.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1872, R2=1944, Total=3816. Warn if over 250 bubbles per interval.
17-03-18 05:33:27.144 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.020806,
17-03-18 05:33:27.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:27.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:28.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:28.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:28.194 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:33:28.194 -07 000000610 INF: =================== Cycle #139, Pumping Reagent CMS (4) ===================
17-03-18 05:33:28.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:28.354 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:33:28.354 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:33:28.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:28.514 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:33:28.514 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:33:28.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:33:28.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:33:28.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:29.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:29.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:29.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:33:29.134 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:30.354 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:33:30.354 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:33:30.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:30.374 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 05:33:30.374 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 05:33:30.374 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 05:33:30.524 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:33:30.544 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 05:33:30.544 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 05:33:30.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:30.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:33:30.614 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:33:30.714 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:30.714 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:33:30.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:30.744 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:33:30.744 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:33:30.744 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:33:30.874 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:33:30.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:31.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-18 05:33:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:33:31.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:31.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:31.814 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:33:31.814 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:31.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:31.974 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:33:31.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:33:32.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:32.134 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:33:32.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:33:32.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:33:32.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:33:32.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:32.504 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.990831,
17-03-18 05:33:32.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:32.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:32.754 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:33:32.754 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:32.754 -07 000000561 INF: WaitCommand(10000) start
17-03-18 05:33:32.754 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:33:32.754 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:33:33.974 -07 000000569 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:33:33.974 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-18 05:33:34.004 -07 000000569 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:33:34.004 -07 000000569 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:33:34.134 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:33:34.174 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:35.704 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:35.734 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:36.154 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:36.184 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:36.184 -07 000000569 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:33:36.184 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:33:36.184 -07 000000569 INF: ===================  ===================
17-03-18 05:33:36.774 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:33:37.864 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.974486,
17-03-18 05:33:41.774 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:33:42.764 -07 000000561 INF: WaitCommand(10000) end
17-03-18 05:33:42.764 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:42.764 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 05:33:42.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:42.804 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:33:42.804 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:33:42.804 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:33:42.934 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 05:33:42.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:43.224 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.986717,
17-03-18 05:33:46.774 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:46.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:33:48.584 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.988112,
17-03-18 05:33:49.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:49.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:49.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:49.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:50.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:50.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:50.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:50.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:50.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:50.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:50.934 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 05:33:50.934 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:51.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:51.094 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:33:51.094 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:33:51.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:51.254 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:33:51.254 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:33:51.254 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:33:51.384 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:33:51.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:51.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:33:51.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:51.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:51.874 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:33:51.874 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:53.094 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:33:53.094 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 05:33:53.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:53.114 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:33:53.114 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 05:33:53.114 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 05:33:53.324 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:33:53.344 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 05:33:53.344 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 05:33:53.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:53.414 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:33:53.414 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:33:53.514 -07 000000610 INF: =================== Cycle #139, Pumping Reagent IMT (1) ===================
17-03-18 05:33:53.514 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:33:53.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:53.544 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 05:33:53.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 05:33:53.544 -07 000000610 INF: =================== Cycle #139, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 05:33:53.674 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:33:53.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:53.944 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.997626,
17-03-18 05:33:55.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:55.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:55.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:55.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:55.634 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:33:55.634 -07 000000610 INF: =================== Cycle #139, Pumping Reagent IMT (1) ===================
17-03-18 05:33:55.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:55.794 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:33:55.794 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:33:55.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:55.954 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:33:55.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:33:55.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:33:56.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:33:56.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:56.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:56.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:56.574 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:33:56.574 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:33:56.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:33:56.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:33:57.794 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:33:57.794 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:33:57.794 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:57.814 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 05:33:57.814 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 05:33:57.814 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:33:58.044 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:33:58.064 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 05:33:58.064 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 05:33:58.114 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:33:58.134 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:33:58.134 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:33:58.234 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:58.234 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:33:58.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:58.264 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 05:33:58.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 05:33:58.264 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:33:58.394 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:33:58.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:33:59.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:33:59.304 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.033041,
17-03-18 05:33:59.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:33:59.334 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 05:33:59.334 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:33:59.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:59.494 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:33:59.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:33:59.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:33:59.654 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:33:59.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:33:59.654 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:33:59.784 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:33:59.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:34:00.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:34:00.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:34:00.274 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:34:00.274 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:34:00.274 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 65° ===================
17-03-18 05:34:00.274 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 05:34:00.274 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 05:34:00.274 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:34:00.284 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:34:00.284 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:34:00.284 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-18 05:34:00.294 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:34:00.294 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 65° ===================
17-03-18 05:34:00.294 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:34:00.294 -07 000000610 INF: WaitCommand(30000) start
17-03-18 05:34:01.774 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:01.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:04.664 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.020806,
17-03-18 05:34:06.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:06.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:10.024 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.989471,
17-03-18 05:34:11.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:11.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:15.384 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.983999,
17-03-18 05:34:16.774 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:20.744 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.99219,
17-03-18 05:34:21.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:26.104 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.016692,
17-03-18 05:34:26.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:26.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:30.304 -07 000000610 INF: WaitCommand(30000) end
17-03-18 05:34:30.304 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:34:30.304 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 05:34:30.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:34:30.434 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 05:34:30.434 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 05:34:30.434 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:34:30.564 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 05:34:30.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:34:31.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:34:31.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:34:31.174 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 05:34:31.174 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:34:31.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:34:31.334 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:34:31.334 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:34:31.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:34:31.464 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.038479,
17-03-18 05:34:31.494 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:34:31.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:34:31.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:34:31.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:34:31.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:34:31.774 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:32.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:34:32.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:34:32.114 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:34:32.114 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:34:32.114 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:34:32.114 -07 000000581 INF: WaitCommand(30000) start
17-03-18 05:34:32.114 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:34:33.334 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 05:34:33.334 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 05:34:33.364 -07 000000579 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 05:34:33.364 -07 000000579 INF: LanePump: Current Position of Pump is: 1920
17-03-18 05:34:33.494 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:34:33.534 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:34:35.874 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 05:34:35.904 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:34:36.324 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 05:34:36.354 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:34:36.354 -07 000000579 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 05:34:36.354 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:34:36.354 -07 000000579 INF: ===================  ===================
17-03-18 05:34:36.774 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:36.824 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.027603,
17-03-18 05:34:41.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:42.184 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.007176,
17-03-18 05:34:46.774 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:46.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:47.544 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.999021,
17-03-18 05:34:51.774 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:51.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:52.904 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.98264,
17-03-18 05:34:56.774 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:34:56.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:34:58.264 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.011254,
17-03-18 05:35:01.774 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:01.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:02.124 -07 000000581 INF: WaitCommand(30000) end
17-03-18 05:35:02.124 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 22° ===================
17-03-18 05:35:02.124 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 05:35:02.124 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 05:35:02.134 -07 000000592 INF: FPGA: Recv TEC2TEMP 
17-03-18 05:35:02.134 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:35:02.134 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 05:35:02.134 -07 000000461 INF: FPGA: Recv TEC2EN 
17-03-18 05:35:02.144 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:35:02.144 -07 000000610 INF: =================== Cycle #139, Flow Cell Temp 22° ===================
17-03-18 05:35:02.144 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:35:02.144 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:35:02.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 05:35:02.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:02.174 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 05:35:02.174 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 05:35:02.174 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:35:02.304 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 05:35:02.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:03.624 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.03576,
17-03-18 05:35:05.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:05.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:05.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:05.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:06.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:06.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:06.404 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 05:35:06.404 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:35:06.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:06.564 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:35:06.564 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:35:06.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:06.724 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:35:06.724 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:35:06.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:35:06.774 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:06.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:06.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:35:06.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:07.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:07.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:07.344 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:35:07.344 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:35:08.564 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 05:35:08.564 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 05:35:08.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:35:08.584 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:35:08.584 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 05:35:08.584 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 05:35:08.734 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:35:08.754 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:35:08.754 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:35:08.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:35:08.824 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:35:08.824 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:35:08.924 -07 000000610 INF: =================== Cycle #139, Pumping Reagent USM (2) ===================
17-03-18 05:35:08.924 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 05:35:08.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:08.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 05:35:08.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 05:35:08.954 -07 000000610 INF: =================== Cycle #139, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 05:35:08.984 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.015368,
17-03-18 05:35:09.084 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 05:35:09.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:10.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:10.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:11.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:11.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:11.044 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 05:35:11.044 -07 000000610 INF: =================== Cycle #139, Pumping Reagent USM (2) ===================
17-03-18 05:35:11.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:11.204 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:35:11.204 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:35:11.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:11.364 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:35:11.364 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:35:11.364 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:35:11.494 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:35:11.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:11.774 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:11.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:11.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:11.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:11.984 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 05:35:11.984 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:35:13.204 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 05:35:13.204 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 05:35:13.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:35:13.224 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 05:35:13.224 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 05:35:13.224 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 05:35:13.374 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:35:13.394 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 05:35:13.394 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 05:35:13.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:35:13.464 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:35:13.464 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 05:35:13.564 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:35:13.564 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 05:35:13.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:13.594 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 05:35:13.594 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 05:35:13.594 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 05:35:13.724 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 05:35:13.764 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:14.344 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.03576,
17-03-18 05:35:14.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:14.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:14.664 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 05:35:14.664 -07 000000610 INF: =================== Cycle #139, Pumping Reagent PR2 (3) ===================
17-03-18 05:35:14.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:14.824 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:35:14.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:35:14.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 05:35:14.994 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:35:14.994 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:35:14.994 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 05:35:15.124 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 05:35:15.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:15.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:15.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:15.614 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 05:35:15.614 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:35:15.614 -07 000000585 INF: WaitCommand(10000) start
17-03-18 05:35:15.614 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:35:15.614 -07 000000592 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 05:35:16.774 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:16.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:16.824 -07 000000592 INF: AsyncDelayTimer waited 1206ms
17-03-18 05:35:16.824 -07 000000592 INF: LanePump: Xmit /1?\r
17-03-18 05:35:16.854 -07 000000592 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 05:35:16.854 -07 000000592 INF: LanePump: Current Position of Pump is: 1110
17-03-18 05:35:16.984 -07 000000592 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 05:35:17.024 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:18.554 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:18.584 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 05:35:19.004 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 05:35:19.034 -07 000000592 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 05:35:19.034 -07 000000592 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 05:35:19.034 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 05:35:19.034 -07 000000592 INF: ===================  ===================
17-03-18 05:35:19.704 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.033041,
17-03-18 05:35:21.774 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:21.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:25.064 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.007176,
17-03-18 05:35:25.624 -07 000000585 INF: WaitCommand(10000) end
17-03-18 05:35:25.624 -07 000000610 INF: =================== Cycle #139, Imaging ===================
17-03-18 05:35:25.624 -07 000000610 INF: Imaging Cycle 139: ScanTilesCommand Cycle 139 time start.
17-03-18 05:35:25.634 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 05:35:25.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:35:25.654 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 05:35:25.654 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 05:35:25.654 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 05:35:25.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 05:35:25.974 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 05:35:25.974 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 05:35:26.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 05:35:26.044 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 05:35:26.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:26.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:26.044 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 05:35:26.044 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:26.044 -07 000000581 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 05:35:26.044 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-18 05:35:26.054 -07 000000581 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:35:26.054 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 05:35:26.054 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23145
17-03-18 05:35:26.064 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:26.064 -07 000000581 INF: RedLED: Using Red data: Photodiode ADC 23145 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.7 mW
17-03-18 05:35:26.064 -07 000000581 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 05:35:26.064 -07 000000474 INF: FPGA: Recv EXLED1OFF 
17-03-18 05:35:26.074 -07 000000581 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:26.074 -07 000000581 INF: RedLED: LED was on for 19 ms
17-03-18 05:35:26.074 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 05:35:26.074 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 05:35:26.074 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:26.074 -07 000000581 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 05:35:26.074 -07 000000467 INF: FPGA: Recv EXLED2ON 
17-03-18 05:35:26.084 -07 000000581 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:35:26.084 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:35:26.084 -07 000000618 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 05:35:26.094 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:26.094 -07 000000581 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 05:35:26.094 -07 000000581 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 05:35:26.094 -07 000000561 INF: FPGA: Recv EXLED2OFF 
17-03-18 05:35:26.104 -07 000000581 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:26.104 -07 000000581 INF: GreenLED: LED was on for 20 ms
17-03-18 05:35:26.104 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 05:35:26.104 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:35:26.104 -07 000000592 INF: FPGA: Recv EMCUR 
17-03-18 05:35:26.114 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:35:26.114 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 05:35:26.614 -07 000000585 INF: FPGA: Recv EMOUT
17-03-18 05:35:26.614 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-18 05:35:26.614 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 05:35:26.614 -07 000000592 INF: FPGA: Recv EMCUR 
17-03-18 05:35:26.624 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:26.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:26.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126657625182912. ------
17-03-18 05:35:26.624 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:26.624 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17851 mm
17-03-18 05:35:26.624 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:26.624 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:26.624 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:35:26.624 -07 000000592 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 05:35:26.624 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38996, sync = True, waitForSettling = False)
17-03-18 05:35:26.624 -07 000000608 INF: Z Motor: Moving to -0.178512 mm, started at -0.126658 mm, distance = -51.85 um
17-03-18 05:35:26.634 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:35:26.634 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:26.634 -07 000000585 INF: FPGA: Recv YRDPOS 154378
17-03-18 05:35:26.644 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:35:26.644 -07 000000592 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:26.644 -07 000000592 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 05:35:26.644 -07 000000592 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:35:26.644 -07 000000608 INF: FPGA: Xmit ZDACW 38996\n [Z Motor]
17-03-18 05:35:26.644 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:35:26.654 -07 000000608 INF: FPGA: 'ZDACW 38996' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:35:26.654 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:26.664 -07 000000592 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:35:26.674 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:26.674 -07 000000585 INF: FPGA: Recv ZDACR 38996
17-03-18 05:35:26.684 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:35:26.684 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:35:26.774 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:26.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:26.854 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:26.854 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:35:28.344 -07 000000585 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 05:35:28.344 -07 000000592 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 05:35:28.344 -07 000000592 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 05:35:28.344 -07 000000592 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 05:35:28.344 -07 000000592 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.467 mm, average velocity = 9.072 mm/sec
17-03-18 05:35:30.424 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.978563,
17-03-18 05:35:31.194 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:31.194 -07 000000561 INF: FPGA: Recv YRDPOS 122694
17-03-18 05:35:31.204 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:31.204 -07 000000592 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:31.234 -07 000000592 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:31.234 -07 000000592 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 05:35:31.234 -07 000000592 INF: Y Motor: Moved to 59.9092 after 4604 ms
17-03-18 05:35:31.234 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178512 mm (DAC = 38996)
17-03-18 05:35:31.234 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.244 -07 000000581 INF: FPGA: Recv ZSGSRD 37083
17-03-18 05:35:31.244 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:35:31.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.244 -07 000000592 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:35:31.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:31.254 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.254 -07 000000581 INF: FPGA: Recv ZSGSRD 37076
17-03-18 05:35:31.264 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.264 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.264 -07 000000467 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:35:31.274 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.274 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.274 -07 000000592 INF: FPGA: Recv ZSGSRD 37073
17-03-18 05:35:31.284 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.284 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.284 -07 000000608 INF: FPGA: Recv ZSGSRD 37081
17-03-18 05:35:31.294 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.294 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.294 -07 000000467 INF: FPGA: Recv ZSGSRD 37079
17-03-18 05:35:31.304 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.304 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.304 -07 000000608 INF: FPGA: Recv ZSGSRD 37076
17-03-18 05:35:31.314 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.314 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.314 -07 000000618 INF: FPGA: Recv ZSGSRD 37078
17-03-18 05:35:31.324 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.324 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:31.324 -07 000000608 INF: FPGA: Recv ZSGSRD 37080
17-03-18 05:35:31.334 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.334 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:31.334 -07 000000585 INF: FPGA: Recv ZPIEZORD 33325
17-03-18 05:35:31.344 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:31.344 -07 000000474 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.3 V.
17-03-18 05:35:31.344 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37078 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37079 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37073 (-177.6 uncal um), Max = 37083 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:35:31.344 -07 000000474 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37078, posNoise = 5, negNoise = 5
17-03-18 05:35:31.344 -07 000000474 INF: Z Motor: After move to -0.178512, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:31.344 -07 000000474 INF: Z Motor: Settle wait time = 4608 ms, measure time = 103 ms (allowed 150 ms), total time = 4711 ms
17-03-18 05:35:31.344 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:31.394 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 05:35:31.394 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:31.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:31.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:31.394 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:31.394 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:31.394 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:31.394 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:31.394 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:31.394 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:35:31.424 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 05:35:31.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:31.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:35:31.424 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:31.434 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:35:31.434 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 05:35:31.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:31.484 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:35:31.774 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:31.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:31.784 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:35:31.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:35:31.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:31.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) start.
17-03-18 05:35:31.824 -07 000000581 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:35:31.824 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:31.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 05:35:31.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 576268800, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:35:31.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:31.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:31.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:35:32.024 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:32.024 -07 000000479 INF: Image SNR check: start
17-03-18 05:35:32.024 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:32.034 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:32.034 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:32.034 -07 000000479 INF: Image SNR check: pass  [peak (Max-Min)=131.57]
17-03-18 05:35:32.034 -07 000000479 INF: Autofocus start
17-03-18 05:35:32.034 -07 000000479 INF: MeasureProfile start
17-03-18 05:35:32.044 -07 000000479 INF: MeasureProfile done
17-03-18 05:35:32.044 -07 000000479 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:35:32.044 -07 000000479 INF: Autofocus finished
17-03-18 05:35:32.234 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:32.234 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:35:32.234 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178520289803348. ----------
17-03-18 05:35:32.234 -07 000000610 INF: Cycle	139	Tile	1	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:32.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37511, sync = True, waitForSettling = True)
17-03-18 05:35:32.244 -07 000000610 INF: Z Motor: Moving to -0.171714 mm, started at -0.178520 mm, distance = 6.81 um
17-03-18 05:35:32.244 -07 000000610 INF: FPGA: Xmit ZDACW 37511\n [Z Motor]
17-03-18 05:35:32.244 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:35:32.254 -07 000000610 INF: FPGA: 'ZDACW 37511' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:32.254 -07 000000618 INF: FPGA: Recv ZDACR 37511
17-03-18 05:35:32.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:32.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.414 -07 000000581 INF: FPGA: Recv ZSGSRD 36023
17-03-18 05:35:32.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.424 -07 000000618 INF: FPGA: Recv ZSGSRD 36027
17-03-18 05:35:32.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.434 -07 000000618 INF: FPGA: Recv ZSGSRD 36020
17-03-18 05:35:32.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.444 -07 000000592 INF: FPGA: Recv ZSGSRD 36019
17-03-18 05:35:32.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.454 -07 000000474 INF: FPGA: Recv ZSGSRD 36020
17-03-18 05:35:32.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.464 -07 000000592 INF: FPGA: Recv ZSGSRD 36021
17-03-18 05:35:32.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.474 -07 000000474 INF: FPGA: Recv ZSGSRD 36016
17-03-18 05:35:32.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.484 -07 000000561 INF: FPGA: Recv ZSGSRD 36018
17-03-18 05:35:32.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.494 -07 000000474 INF: FPGA: Recv ZSGSRD 36017
17-03-18 05:35:32.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:32.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36028
17-03-18 05:35:32.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:32.514 -07 000000581 INF: FPGA: Recv ZPIEZORD 31924
17-03-18 05:35:32.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:32.524 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.0 V.
17-03-18 05:35:32.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36021 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36020 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36016 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:35:32.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36021, posNoise = 7, negNoise = 5
17-03-18 05:35:32.524 -07 000000610 INF: Z Motor: After move to -0.171714, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:32.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:35:32.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:32.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:32.524 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:32.524 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:32.524 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:32.524 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:32.524 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:32.524 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:32.524 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:32.524 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:32.524 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:35:32.524 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:35:32.524 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:35:32.524 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:32.544 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:35:32.544 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:35:32.544 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 05:35:32.544 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:32.554 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:35:32.554 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:32.564 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:35:32.564 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 05:35:32.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37687 150\n [Camera]
17-03-18 05:35:32.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:33.214 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:33.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:33.214 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:33.214 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:33.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:33.214 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:33.224 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:33.224 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:35:33.224 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:33.224 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:35:33.404 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37687 827
17-03-18 05:35:33.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:35:33.614 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:35:33.614 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:35:33.614 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:33.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:35:33.614 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:35:33.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:33.614 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:35:33.614 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:33.614 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 05:35:33.624 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:35:33.764 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:33.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:33.764 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:33.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:33.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:33.884 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:33.884 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:33.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:35:33.894 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:33.894 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:35:33.954 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:35:33.954 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:33.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37687 150' command took 2 ms to send, 1379 ms to get response, and 1390 ms overall
17-03-18 05:35:33.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:33.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171729897569506. ------
17-03-18 05:35:33.964 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:33.964 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17795 mm
17-03-18 05:35:33.964 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:33.964 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:35:33.964 -07 000000581 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 05:35:33.964 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38874, sync = True, waitForSettling = False)
17-03-18 05:35:33.964 -07 000000618 INF: Z Motor: Moving to -0.177954 mm, started at -0.171730 mm, distance = -6.22 um
17-03-18 05:35:33.964 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:33.974 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:35:33.974 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:33.974 -07 000000467 INF: FPGA: Recv YRDPOS 122694
17-03-18 05:35:33.984 -07 000000618 INF: FPGA: Xmit ZDACW 38874\n [Z Motor]
17-03-18 05:35:33.984 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:35:33.984 -07 000000581 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:33.984 -07 000000581 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:33.984 -07 000000581 INF: Y Motor: Moving 1333 steps0
17-03-18 05:35:33.984 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:35:33.994 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:33.994 -07 000000618 INF: FPGA: 'ZDACW 38874' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:35:34.004 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:34.014 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:34.014 -07 000000626 INF: FPGA: Recv ZDACR 38874
17-03-18 05:35:34.024 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:35:34.024 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 05:35:34.194 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:34.194 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:35:34.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:35:34.284 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:35:34.284 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:34.284 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:34.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:35:34.284 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:35:34.284 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:34.294 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:34.294 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 05:35:34.294 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:35:34.374 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:35:34.374 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:35:34.414 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:34.424 -07 000000626 INF: FPGA: Recv YRDPOS 124378
17-03-18 05:35:34.434 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:34.434 -07 000000581 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:34.434 -07 000000581 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 05:35:34.434 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.099 mm/sec
17-03-18 05:35:35.384 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:35.384 -07 000000474 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:35:35.394 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:35.394 -07 000000581 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:35.424 -07 000000581 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:35.424 -07 000000581 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:35:35.424 -07 000000581 INF: Y Motor: Moved to 60.7319 after 1457 ms (table move)
17-03-18 05:35:35.424 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177954 mm (DAC = 38874)
17-03-18 05:35:35.424 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.434 -07 000000474 INF: FPGA: Recv ZSGSRD 36994
17-03-18 05:35:35.434 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:35:35.434 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.434 -07 000000474 INF: FPGA: Recv ZSGSRD 36995
17-03-18 05:35:35.444 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.444 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.444 -07 000000474 INF: FPGA: Recv ZSGSRD 36990
17-03-18 05:35:35.454 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.454 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.454 -07 000000618 INF: FPGA: Recv ZSGSRD 36985
17-03-18 05:35:35.464 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.474 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.474 -07 000000618 INF: FPGA: Recv ZSGSRD 36988
17-03-18 05:35:35.484 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:35:35.484 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.484 -07 000000611 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:35:35.494 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.494 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.494 -07 000000474 INF: FPGA: Recv ZSGSRD 36996
17-03-18 05:35:35.504 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.504 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.504 -07 000000474 INF: FPGA: Recv ZSGSRD 36993
17-03-18 05:35:35.514 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.514 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.514 -07 000000611 INF: FPGA: Recv ZSGSRD 36992
17-03-18 05:35:35.524 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.524 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:35.524 -07 000000581 INF: FPGA: Recv ZSGSRD 36990
17-03-18 05:35:35.534 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.534 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:35.534 -07 000000611 INF: FPGA: Recv ZPIEZORD 33230
17-03-18 05:35:35.544 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:35.544 -07 000000592 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.3 V.
17-03-18 05:35:35.544 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36991 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36992 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36985 (-177.0 uncal um), Max = 36996 (-177.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:35:35.544 -07 000000592 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36991, posNoise = 5, negNoise = 6
17-03-18 05:35:35.544 -07 000000592 INF: Z Motor: After move to -0.177954, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:35.544 -07 000000592 INF: Z Motor: Settle wait time = 1460 ms, measure time = 113 ms (allowed 150 ms), total time = 1573 ms
17-03-18 05:35:35.544 -07 000000592 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:35.584 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 05:35:35.584 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:35.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:35.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:35.584 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:35.584 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:35.584 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:35.584 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:35.584 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:35.584 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:35.594 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:35.594 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:35.604 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:35:35.604 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:35:35.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:35.654 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:35:35.784 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.963579,
17-03-18 05:35:35.954 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:35:35.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:35:35.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:35.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:35:35.994 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:35:35.994 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:35.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:35:36.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:35:36.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:36.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:36.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:35:36.094 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:36.094 -07 000000592 INF: Autofocus start
17-03-18 05:35:36.094 -07 000000592 INF: MeasureProfile start
17-03-18 05:35:36.094 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:36.104 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:36.104 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:36.104 -07 000000592 INF: MeasureProfile done
17-03-18 05:35:36.104 -07 000000592 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:35:36.104 -07 000000592 INF: Autofocus finished
17-03-18 05:35:36.304 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:36.304 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:35:36.304 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177961383347014. ----------
17-03-18 05:35:36.304 -07 000000610 INF: Cycle	139	Tile	2	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:36.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37389, sync = True, waitForSettling = True)
17-03-18 05:35:36.314 -07 000000610 INF: Z Motor: Moving to -0.171156 mm, started at -0.177961 mm, distance = 6.81 um
17-03-18 05:35:36.314 -07 000000610 INF: FPGA: Xmit ZDACW 37389\n [Z Motor]
17-03-18 05:35:36.314 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:35:36.324 -07 000000610 INF: FPGA: 'ZDACW 37389' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:36.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:36.324 -07 000000608 INF: FPGA: Recv ZDACR 37389
17-03-18 05:35:36.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:36.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.484 -07 000000581 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:35:36.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:36.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.494 -07 000000585 INF: FPGA: Recv ZSGSRD 35935
17-03-18 05:35:36.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.504 -07 000000611 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:35:36.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.514 -07 000000608 INF: FPGA: Recv ZSGSRD 35932
17-03-18 05:35:36.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.524 -07 000000581 INF: FPGA: Recv ZSGSRD 35933
17-03-18 05:35:36.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:36.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.534 -07 000000608 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:35:36.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.544 -07 000000585 INF: FPGA: Recv ZSGSRD 35938
17-03-18 05:35:36.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.554 -07 000000474 INF: FPGA: Recv ZSGSRD 35931
17-03-18 05:35:36.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.564 -07 000000585 INF: FPGA: Recv ZSGSRD 35930
17-03-18 05:35:36.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:36.574 -07 000000592 INF: FPGA: Recv ZSGSRD 35935
17-03-18 05:35:36.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:36.584 -07 000000581 INF: FPGA: Recv ZPIEZORD 31796
17-03-18 05:35:36.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:36.594 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 05:35:36.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35932 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35930 (-170.3 uncal um), Max = 35938 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:35:36.594 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35932, posNoise = 6, negNoise = 2
17-03-18 05:35:36.594 -07 000000610 INF: Z Motor: After move to -0.171156, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:36.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:35:36.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:36.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:36.594 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:36.594 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:36.594 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:36.594 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:36.594 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:36.594 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:36.594 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:36.594 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:36.594 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:35:36.594 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:36.594 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:35:36.594 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:36.604 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:35:36.604 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:36.614 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:35:36.614 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:35:36.614 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:35:36.614 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:35:36.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37565 150\n [Camera]
17-03-18 05:35:36.774 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:36.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:36.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:37.264 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:37.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:37.264 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:37.264 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:37.264 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-18 05:35:37.264 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:37.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:37.264 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:37.264 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:37.264 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-18 05:35:37.454 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37565 827
17-03-18 05:35:37.604 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:35:37.654 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 05:35:37.654 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:35:37.654 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:37.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:35:37.664 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:35:37.664 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:37.664 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:37.664 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:37.664 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:35:37.664 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:35:37.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:37.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:37.814 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:37.814 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:37.814 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:35:37.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:37.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:37.824 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:37.824 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:37.824 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:35:38.004 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:35:38.004 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:38.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37565 150' command took 2 ms to send, 1378 ms to get response, and 1390 ms overall
17-03-18 05:35:38.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:38.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.17115814268889. ------
17-03-18 05:35:38.134 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17797 mm
17-03-18 05:35:38.134 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:38.134 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:38.134 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 38877, sync = True, waitForSettling = False)
17-03-18 05:35:38.134 -07 000000592 INF: Z Motor: Moving to -0.177967 mm, started at -0.171158 mm, distance = -6.81 um
17-03-18 05:35:38.134 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:35:38.134 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 05:35:38.134 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:38.144 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:35:38.144 -07 000000592 INF: FPGA: Xmit ZDACW 38877\n [Z Motor]
17-03-18 05:35:38.144 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:35:38.154 -07 000000592 INF: FPGA: 'ZDACW 38877' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:35:38.154 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:38.154 -07 000000467 INF: FPGA: Recv YRDPOS 124379
17-03-18 05:35:38.164 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:38.164 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:35:38.164 -07 000000608 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:38.164 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:38.164 -07 000000608 INF: Y Motor: Moving 1345 steps-23
17-03-18 05:35:38.174 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:38.174 -07 000000611 INF: FPGA: Recv ZDACR 38877
17-03-18 05:35:38.184 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:38.184 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:35:38.184 -07 000000592 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:35:38.214 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:35:38.214 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:35:38.214 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:38.214 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:35:38.214 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:35:38.224 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:38.224 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:38.224 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:35:38.224 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:35:38.234 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:35:38.364 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:38.364 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:35:38.554 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:35:38.554 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:35:38.604 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:38.614 -07 000000461 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:35:38.614 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:35:38.614 -07 000000608 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:38.614 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:35:38.614 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 05:35:39.564 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:39.564 -07 000000585 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:35:39.574 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.574 -07 000000608 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:39.604 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:39.604 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:35:39.604 -07 000000608 INF: Y Motor: Moved to 61.5625 after 1466 ms (table move)
17-03-18 05:35:39.604 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177967 mm (DAC = 38877)
17-03-18 05:35:39.604 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.604 -07 000000608 INF: FPGA: Recv ZSGSRD 36996
17-03-18 05:35:39.614 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:35:39.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.614 -07 000000626 INF: FPGA: Recv ZSGSRD 36996
17-03-18 05:35:39.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.624 -07 000000626 INF: FPGA: Recv ZSGSRD 36990
17-03-18 05:35:39.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.634 -07 000000626 INF: FPGA: Recv ZSGSRD 36992
17-03-18 05:35:39.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.644 -07 000000608 INF: FPGA: Recv ZSGSRD 37000
17-03-18 05:35:39.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.654 -07 000000618 INF: FPGA: Recv ZSGSRD 37002
17-03-18 05:35:39.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:39.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.664 -07 000000474 INF: FPGA: Recv ZSGSRD 36991
17-03-18 05:35:39.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.674 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.674 -07 000000618 INF: FPGA: Recv ZSGSRD 36989
17-03-18 05:35:39.684 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.684 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36996
17-03-18 05:35:39.694 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.694 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:39.694 -07 000000474 INF: FPGA: Recv ZSGSRD 36999
17-03-18 05:35:39.704 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.704 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:39.704 -07 000000467 INF: FPGA: Recv ZPIEZORD 33243
17-03-18 05:35:39.714 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:39.714 -07 000000581 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.3 V.
17-03-18 05:35:39.714 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36995 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36996 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36989 (-177.1 uncal um), Max = 37002 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:35:39.714 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36995, posNoise = 7, negNoise = 6
17-03-18 05:35:39.714 -07 000000581 INF: Z Motor: After move to -0.177967, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:39.714 -07 000000581 INF: Z Motor: Settle wait time = 1470 ms, measure time = 105 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:35:39.714 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:39.764 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:35:39.764 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:39.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:39.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:39.764 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:39.764 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:39.764 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:39.764 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:39.764 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:39.764 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:39.774 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:35:39.774 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:39.774 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:35:39.774 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:35:39.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:39.834 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 05:35:40.124 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 05:35:40.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 05:35:40.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:40.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:35:40.164 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:35:40.164 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:40.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:35:40.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:35:40.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:40.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:40.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:35:40.264 -07 000000581 INF: Autofocus start
17-03-18 05:35:40.264 -07 000000581 INF: MeasureProfile start
17-03-18 05:35:40.274 -07 000000581 INF: MeasureProfile done
17-03-18 05:35:40.274 -07 000000581 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:35:40.274 -07 000000581 INF: Autofocus finished
17-03-18 05:35:40.284 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:40.284 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:40.294 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:35:40.304 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:40.504 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:40.504 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 05:35:40.504 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177987080195582. ----------
17-03-18 05:35:40.504 -07 000000610 INF: Cycle	139	Tile	3	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:40.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-18 05:35:40.514 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.177987 mm, distance = 6.90 um
17-03-18 05:35:40.514 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-18 05:35:40.514 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:35:40.524 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:40.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:40.524 -07 000000467 INF: FPGA: Recv ZDACR 37374
17-03-18 05:35:40.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:40.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.684 -07 000000467 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:35:40.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:40.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:35:40.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.704 -07 000000611 INF: FPGA: Recv ZSGSRD 35926
17-03-18 05:35:40.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.714 -07 000000611 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:35:40.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.724 -07 000000611 INF: FPGA: Recv ZSGSRD 35920
17-03-18 05:35:40.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.734 -07 000000581 INF: FPGA: Recv ZSGSRD 35922
17-03-18 05:35:40.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.744 -07 000000618 INF: FPGA: Recv ZSGSRD 35921
17-03-18 05:35:40.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.754 -07 000000611 INF: FPGA: Recv ZSGSRD 35924
17-03-18 05:35:40.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.764 -07 000000618 INF: FPGA: Recv ZSGSRD 35928
17-03-18 05:35:40.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:40.774 -07 000000467 INF: FPGA: Recv ZSGSRD 35916
17-03-18 05:35:40.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:40.784 -07 000000611 INF: FPGA: Recv ZPIEZORD 31759
17-03-18 05:35:40.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:40.794 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 05:35:40.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35922 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35923 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35928 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:35:40.794 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35922, posNoise = 6, negNoise = 6
17-03-18 05:35:40.794 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:40.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:35:40.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:40.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:40.794 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:40.794 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:40.794 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:40.794 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:40.794 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:40.794 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:40.794 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:35:40.794 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:40.794 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:35:40.794 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:40.804 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:40.804 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:40.804 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:35:40.804 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:40.804 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:35:40.804 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:35:40.804 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:35:40.814 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:35:40.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37551 150\n [Camera]
17-03-18 05:35:41.014 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:41.144 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.008536,
17-03-18 05:35:41.454 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:41.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:41.454 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:41.454 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:41.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:41.454 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:41.454 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:41.454 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:35:41.454 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:41.454 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:35:41.644 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 827
17-03-18 05:35:41.774 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:41.774 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:41.794 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:35:41.844 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:35:41.844 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:35:41.844 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:41.854 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:41.854 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:35:41.854 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:35:41.854 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:41.854 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:41.854 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:35:41.864 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:35:42.014 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:42.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:42.014 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:42.014 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:42.014 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:35:42.014 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:42.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:42.014 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:42.014 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:42.014 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:35:42.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:35:42.204 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:42.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37551 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-18 05:35:42.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:42.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171093900567472. ------
17-03-18 05:35:42.204 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:42.204 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17729 mm
17-03-18 05:35:42.204 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:42.214 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:42.214 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 05:35:42.214 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:35:42.214 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 05:35:42.214 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:42.214 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38729, sync = True, waitForSettling = False)
17-03-18 05:35:42.214 -07 000000581 INF: Z Motor: Moving to -0.177290 mm, started at -0.171094 mm, distance = -6.20 um
17-03-18 05:35:42.214 -07 000000611 INF: FPGA: Recv YRDPOS 126080
17-03-18 05:35:42.224 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:42.224 -07 000000626 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:42.224 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:42.224 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:35:42.224 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:42.234 -07 000000581 INF: FPGA: Xmit ZDACW 38729\n [Z Motor]
17-03-18 05:35:42.234 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:35:42.244 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:42.244 -07 000000581 INF: FPGA: 'ZDACW 38729' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:35:42.254 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:42.254 -07 000000479 INF: FPGA: Recv ZDACR 38729
17-03-18 05:35:42.264 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:35:42.264 -07 000000581 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:35:42.414 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:35:42.414 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:35:42.414 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:42.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:35:42.414 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:35:42.414 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:42.424 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:42.424 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:42.424 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 05:35:42.424 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:35:42.424 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:35:42.424 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:35:42.614 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:35:42.614 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:35:42.664 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:42.674 -07 000000618 INF: FPGA: Recv YRDPOS 127783
17-03-18 05:35:42.674 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 05:35:42.674 -07 000000626 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:42.674 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 05:35:42.674 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:35:43.624 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:43.624 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:35:43.634 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:43.634 -07 000000626 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:43.664 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:43.664 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:35:43.664 -07 000000626 INF: Y Motor: Moved to 62.3945 after 1450 ms (table move)
17-03-18 05:35:43.664 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177290 mm (DAC = 38729)
17-03-18 05:35:43.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.674 -07 000000581 INF: FPGA: Recv ZSGSRD 36887
17-03-18 05:35:43.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 05:35:43.674 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.674 -07 000000474 INF: FPGA: Recv ZSGSRD 36881
17-03-18 05:35:43.684 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:35:43.684 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.684 -07 000000480 INF: FPGA: Recv ZSGSRD 36887
17-03-18 05:35:43.694 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.694 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.694 -07 000000626 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:35:43.704 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.704 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.704 -07 000000581 INF: FPGA: Recv ZSGSRD 36882
17-03-18 05:35:43.714 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.714 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.714 -07 000000626 INF: FPGA: Recv ZSGSRD 36885
17-03-18 05:35:43.724 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.724 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.724 -07 000000581 INF: FPGA: Recv ZSGSRD 36887
17-03-18 05:35:43.734 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.734 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.734 -07 000000561 INF: FPGA: Recv ZSGSRD 36895
17-03-18 05:35:43.744 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.744 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.744 -07 000000480 INF: FPGA: Recv ZSGSRD 36890
17-03-18 05:35:43.754 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:43.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36884
17-03-18 05:35:43.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.764 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:43.764 -07 000000585 INF: FPGA: Recv ZPIEZORD 33073
17-03-18 05:35:43.774 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:43.774 -07 000000467 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.4 V.
17-03-18 05:35:43.774 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36886 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36886 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36881 (-176.4 uncal um), Max = 36895 (-176.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:35:43.774 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36886, posNoise = 9, negNoise = 5
17-03-18 05:35:43.774 -07 000000467 INF: Z Motor: After move to -0.177290, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:43.774 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-18 05:35:43.774 -07 000000467 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:43.824 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:35:43.824 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:43.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:43.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:43.824 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:43.824 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:43.824 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:43.824 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:43.824 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:43.824 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:43.834 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:43.834 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:43.834 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:35:43.834 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:35:43.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:43.884 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:35:44.184 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:35:44.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:35:44.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:44.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:35:44.224 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:35:44.224 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:44.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:35:44.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:35:44.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:44.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:44.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:35:44.324 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:44.324 -07 000000581 INF: Autofocus start
17-03-18 05:35:44.324 -07 000000581 INF: MeasureProfile start
17-03-18 05:35:44.334 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:44.334 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:44.334 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:44.334 -07 000000581 INF: MeasureProfile done
17-03-18 05:35:44.334 -07 000000581 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:35:44.334 -07 000000581 INF: Autofocus finished
17-03-18 05:35:44.534 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:44.534 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:35:44.534 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.17728684107213. ----------
17-03-18 05:35:44.544 -07 000000610 INF: Cycle	139	Tile	4	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:44.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37243, sync = True, waitForSettling = True)
17-03-18 05:35:44.544 -07 000000610 INF: Z Motor: Moving to -0.170488 mm, started at -0.177287 mm, distance = 6.80 um
17-03-18 05:35:44.544 -07 000000610 INF: FPGA: Xmit ZDACW 37243\n [Z Motor]
17-03-18 05:35:44.544 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:35:44.554 -07 000000610 INF: FPGA: 'ZDACW 37243' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:35:44.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:44.554 -07 000000581 INF: FPGA: Recv ZDACR 37243
17-03-18 05:35:44.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:44.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.714 -07 000000581 INF: FPGA: Recv ZSGSRD 35833
17-03-18 05:35:44.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.724 -07 000000461 INF: FPGA: Recv ZSGSRD 35825
17-03-18 05:35:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.734 -07 000000474 INF: FPGA: Recv ZSGSRD 35832
17-03-18 05:35:44.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.744 -07 000000467 INF: FPGA: Recv ZSGSRD 35828
17-03-18 05:35:44.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.754 -07 000000474 INF: FPGA: Recv ZSGSRD 35828
17-03-18 05:35:44.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.764 -07 000000467 INF: FPGA: Recv ZSGSRD 35831
17-03-18 05:35:44.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.774 -07 000000461 INF: FPGA: Recv ZSGSRD 35827
17-03-18 05:35:44.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.784 -07 000000461 INF: FPGA: Recv ZSGSRD 35832
17-03-18 05:35:44.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.794 -07 000000461 INF: FPGA: Recv ZSGSRD 35825
17-03-18 05:35:44.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:44.804 -07 000000467 INF: FPGA: Recv ZSGSRD 35825
17-03-18 05:35:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:44.814 -07 000000467 INF: FPGA: Recv ZPIEZORD 31649
17-03-18 05:35:44.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:44.824 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.2 V.
17-03-18 05:35:44.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35829 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35825 (-169.6 uncal um), Max = 35833 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:35:44.824 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35829, posNoise = 4, negNoise = 4
17-03-18 05:35:44.824 -07 000000610 INF: Z Motor: After move to -0.170488, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:44.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:35:44.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:44.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:44.824 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:44.824 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:44.824 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:44.824 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:44.824 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:44.824 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:44.824 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:35:44.824 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:44.824 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:44.824 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:44.834 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:35:44.834 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:44.834 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:35:44.834 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:44.844 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:35:44.844 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:35:44.844 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 05:35:44.844 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:35:44.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37420 150\n [Camera]
17-03-18 05:35:45.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:45.484 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:45.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:45.484 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:45.484 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:45.484 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:35:45.494 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:45.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:45.494 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:45.494 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:45.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:35:45.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37420 827
17-03-18 05:35:45.834 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 979
17-03-18 05:35:45.884 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:35:45.884 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:35:45.884 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:45.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:35:45.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:35:45.894 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:45.894 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:35:45.894 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:35:45.894 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:45.904 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:35:46.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:46.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:46.044 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:46.044 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:46.044 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:35:46.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:46.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:46.044 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:46.044 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:46.044 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:35:46.234 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:35:46.234 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:46.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37420 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-18 05:35:46.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:46.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170496448838288. ------
17-03-18 05:35:46.364 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:46.364 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17714 mm
17-03-18 05:35:46.364 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:46.364 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:35:46.364 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 05:35:46.364 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38697, sync = True, waitForSettling = False)
17-03-18 05:35:46.364 -07 000000467 INF: Z Motor: Moving to -0.177144 mm, started at -0.170496 mm, distance = -6.65 um
17-03-18 05:35:46.364 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:46.374 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:46.374 -07 000000467 INF: FPGA: Xmit ZDACW 38697\n [Z Motor]
17-03-18 05:35:46.374 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:35:46.384 -07 000000467 INF: FPGA: 'ZDACW 38697' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 05:35:46.384 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:46.384 -07 000000585 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:35:46.394 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:35:46.394 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:46.394 -07 000000512 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:46.394 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:46.394 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-18 05:35:46.404 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:46.404 -07 000000608 INF: FPGA: Recv ZDACR 38697
17-03-18 05:35:46.414 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:46.414 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:35:46.414 -07 000000467 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:35:46.444 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 05:35:46.444 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:35:46.444 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:46.444 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:35:46.444 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:35:46.444 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:46.454 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:46.454 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:35:46.454 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:35:46.464 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:35:46.504 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.990831,
17-03-18 05:35:46.594 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:46.594 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:35:46.774 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:46.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:46.784 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 05:35:46.784 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:35:46.834 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:46.844 -07 000000608 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:35:46.844 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:35:46.844 -07 000000512 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:46.844 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:35:46.844 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 05:35:47.794 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:47.794 -07 000000626 INF: FPGA: Recv YRDPOS 129479
17-03-18 05:35:47.804 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.804 -07 000000512 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:47.834 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:47.834 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:35:47.834 -07 000000512 INF: Y Motor: Moved to 63.2222 after 1466 ms (table move)
17-03-18 05:35:47.834 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177144 mm (DAC = 38697)
17-03-18 05:35:47.834 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.834 -07 000000512 INF: FPGA: Recv ZSGSRD 36865
17-03-18 05:35:47.844 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:35:47.844 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.844 -07 000000626 INF: FPGA: Recv ZSGSRD 36863
17-03-18 05:35:47.854 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.854 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.854 -07 000000512 INF: FPGA: Recv ZSGSRD 36867
17-03-18 05:35:47.864 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.864 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.864 -07 000000512 INF: FPGA: Recv ZSGSRD 36864
17-03-18 05:35:47.874 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.874 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.874 -07 000000608 INF: FPGA: Recv ZSGSRD 36864
17-03-18 05:35:47.884 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.884 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.884 -07 000000512 INF: FPGA: Recv ZSGSRD 36856
17-03-18 05:35:47.894 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.894 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.894 -07 000000581 INF: FPGA: Recv ZSGSRD 36872
17-03-18 05:35:47.904 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:47.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.904 -07 000000512 INF: FPGA: Recv ZSGSRD 36861
17-03-18 05:35:47.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.914 -07 000000581 INF: FPGA: Recv ZSGSRD 36863
17-03-18 05:35:47.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:47.924 -07 000000512 INF: FPGA: Recv ZSGSRD 36866
17-03-18 05:35:47.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.934 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:47.934 -07 000000581 INF: FPGA: Recv ZPIEZORD 33051
17-03-18 05:35:47.944 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:47.944 -07 000000618 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.4 V.
17-03-18 05:35:47.944 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36864 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36856 (-176.2 uncal um), Max = 36872 (-176.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:35:47.944 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36864, posNoise = 8, negNoise = 8
17-03-18 05:35:47.944 -07 000000618 INF: Z Motor: After move to -0.177144, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:47.944 -07 000000618 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-18 05:35:47.944 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:47.994 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 05:35:47.994 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:47.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:47.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:47.994 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:47.994 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:47.994 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:47.994 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:47.994 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:47.994 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:47.994 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:48.004 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:48.004 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:35:48.004 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:35:48.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:48.054 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:35:48.354 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:35:48.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:35:48.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:48.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:35:48.394 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:35:48.394 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:48.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:35:48.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:35:48.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:48.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:48.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:35:48.494 -07 000000618 INF: Autofocus start
17-03-18 05:35:48.494 -07 000000618 INF: MeasureProfile start
17-03-18 05:35:48.494 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:48.494 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:48.504 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:48.504 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:48.504 -07 000000618 INF: MeasureProfile done
17-03-18 05:35:48.504 -07 000000618 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 05:35:48.504 -07 000000618 INF: Autofocus finished
17-03-18 05:35:48.704 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:48.704 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:35:48.704 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.177145508405011. ----------
17-03-18 05:35:48.704 -07 000000610 INF: Cycle	139	Tile	5	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:48.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37140, sync = True, waitForSettling = True)
17-03-18 05:35:48.714 -07 000000610 INF: Z Motor: Moving to -0.170016 mm, started at -0.177146 mm, distance = 7.13 um
17-03-18 05:35:48.714 -07 000000610 INF: FPGA: Xmit ZDACW 37140\n [Z Motor]
17-03-18 05:35:48.714 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:35:48.724 -07 000000610 INF: FPGA: 'ZDACW 37140' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:48.724 -07 000000474 INF: FPGA: Recv ZDACR 37140
17-03-18 05:35:48.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.884 -07 000000608 INF: FPGA: Recv ZSGSRD 35755
17-03-18 05:35:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.894 -07 000000618 INF: FPGA: Recv ZSGSRD 35758
17-03-18 05:35:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.904 -07 000000608 INF: FPGA: Recv ZSGSRD 35760
17-03-18 05:35:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.914 -07 000000581 INF: FPGA: Recv ZSGSRD 35753
17-03-18 05:35:48.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.924 -07 000000608 INF: FPGA: Recv ZSGSRD 35760
17-03-18 05:35:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.934 -07 000000581 INF: FPGA: Recv ZSGSRD 35756
17-03-18 05:35:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.944 -07 000000474 INF: FPGA: Recv ZSGSRD 35754
17-03-18 05:35:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.954 -07 000000581 INF: FPGA: Recv ZSGSRD 35762
17-03-18 05:35:48.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.964 -07 000000474 INF: FPGA: Recv ZSGSRD 35752
17-03-18 05:35:48.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:48.974 -07 000000474 INF: FPGA: Recv ZSGSRD 35752
17-03-18 05:35:48.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:48.984 -07 000000581 INF: FPGA: Recv ZPIEZORD 31571
17-03-18 05:35:48.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:48.994 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.2 V.
17-03-18 05:35:48.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35756 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35756 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35752 (-169.1 uncal um), Max = 35762 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:35:48.994 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35756, posNoise = 6, negNoise = 4
17-03-18 05:35:48.994 -07 000000610 INF: Z Motor: After move to -0.170016, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:48.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:35:48.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:48.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:48.994 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:48.994 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:48.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:48.994 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:48.994 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:48.994 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:48.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:48.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:48.994 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 05:35:48.994 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:48.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:48.994 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:49.004 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:35:49.004 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:49.004 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:35:49.004 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:35:49.014 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:35:49.014 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:35:49.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37316 150\n [Camera]
17-03-18 05:35:49.214 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:49.654 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:49.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:49.654 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:49.654 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:49.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:49.654 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:49.664 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:49.664 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:35:49.664 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:49.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:35:49.844 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37316 827
17-03-18 05:35:49.994 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:35:50.054 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:35:50.054 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:35:50.054 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:50.064 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:50.064 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:35:50.064 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:35:50.064 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:35:50.064 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:50.074 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:50.074 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:35:50.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:50.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:50.214 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:50.214 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:50.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:50.224 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:50.224 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:50.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:35:50.224 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:50.224 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:35:50.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:35:50.404 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:50.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37316 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-18 05:35:50.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:50.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.17002748135194. ------
17-03-18 05:35:50.404 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:50.404 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17631 mm
17-03-18 05:35:50.404 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:50.414 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:35:50.414 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 05:35:50.414 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:50.414 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38515, sync = True, waitForSettling = False)
17-03-18 05:35:50.414 -07 000000608 INF: Z Motor: Moving to -0.176310 mm, started at -0.170027 mm, distance = -6.28 um
17-03-18 05:35:50.414 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:50.414 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:35:50.414 -07 000000618 INF: FPGA: Recv YRDPOS 129480
17-03-18 05:35:50.424 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:50.424 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:50.424 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:50.544 -07 000000608 INF: FPGA: Xmit ZDACW 38515\n [Z Motor]
17-03-18 05:35:50.544 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:50.544 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:35:50.544 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:35:50.554 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:50.554 -07 000000608 INF: FPGA: 'ZDACW 38515' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 05:35:50.564 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:50.564 -07 000000611 INF: FPGA: Recv ZDACR 38515
17-03-18 05:35:50.574 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:35:50.574 -07 000000608 INF: Z Motor: MoveAbsStepped took 158 ms (did NOT wait for settling yet))
17-03-18 05:35:50.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:35:50.614 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:35:50.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:50.624 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:50.624 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:35:50.624 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:50.624 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:35:50.624 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 78 ms to get response, and 210 ms overall
17-03-18 05:35:50.624 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:35:50.624 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:50.624 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:35:50.634 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:35:50.934 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 05:35:50.934 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 386 ms overall
17-03-18 05:35:51.004 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:51.004 -07 000000561 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:35:51.014 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 05:35:51.014 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:51.014 -07 000000479 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 05:35:51.014 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.177 mm/sec
17-03-18 05:35:51.774 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:51.864 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.985358,
17-03-18 05:35:51.964 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:51.964 -07 000000467 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:35:51.974 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:51.974 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:52.004 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:52.004 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:35:52.004 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1589 ms (table move)
17-03-18 05:35:52.004 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176310 mm (DAC = 38515)
17-03-18 05:35:52.004 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.004 -07 000000585 INF: FPGA: Recv ZSGSRD 36737
17-03-18 05:35:52.014 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:35:52.014 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.014 -07 000000585 INF: FPGA: Recv ZSGSRD 36733
17-03-18 05:35:52.024 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.024 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.024 -07 000000585 INF: FPGA: Recv ZSGSRD 36731
17-03-18 05:35:52.034 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.034 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.034 -07 000000585 INF: FPGA: Recv ZSGSRD 36727
17-03-18 05:35:52.044 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.044 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.044 -07 000000585 INF: FPGA: Recv ZSGSRD 36736
17-03-18 05:35:52.054 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.054 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.054 -07 000000592 INF: FPGA: Recv ZSGSRD 36744
17-03-18 05:35:52.064 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.064 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.064 -07 000000592 INF: FPGA: Recv ZSGSRD 36738
17-03-18 05:35:52.074 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.074 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.074 -07 000000592 INF: FPGA: Recv ZSGSRD 36729
17-03-18 05:35:52.084 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.084 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.084 -07 000000592 INF: FPGA: Recv ZSGSRD 36733
17-03-18 05:35:52.094 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.094 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:52.094 -07 000000592 INF: FPGA: Recv ZSGSRD 36734
17-03-18 05:35:52.104 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.104 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:52.104 -07 000000592 INF: FPGA: Recv ZPIEZORD 32920
17-03-18 05:35:52.114 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.114 -07 000000480 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.4 V.
17-03-18 05:35:52.114 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36734 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36734 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36727 (-175.4 uncal um), Max = 36744 (-175.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:35:52.114 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36734, posNoise = 10, negNoise = 7
17-03-18 05:35:52.114 -07 000000480 INF: Z Motor: After move to -0.176310, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:52.114 -07 000000480 INF: Z Motor: Settle wait time = 1593 ms, measure time = 106 ms (allowed 150 ms), total time = 1699 ms
17-03-18 05:35:52.114 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:52.164 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1751 ms
17-03-18 05:35:52.164 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:52.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:52.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:52.164 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:52.164 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:52.164 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:52.164 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:52.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:52.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:52.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:52.174 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:52.184 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:35:52.184 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:35:52.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:52.224 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:35:52.524 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:35:52.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:35:52.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:52.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:35:52.564 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:35:52.564 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:52.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:35:52.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:35:52.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:52.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:52.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:35:52.664 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:52.664 -07 000000581 INF: Autofocus start
17-03-18 05:35:52.664 -07 000000581 INF: MeasureProfile start
17-03-18 05:35:52.664 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:52.674 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:52.674 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:52.674 -07 000000581 INF: MeasureProfile done
17-03-18 05:35:52.674 -07 000000581 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:35:52.674 -07 000000581 INF: Autofocus finished
17-03-18 05:35:52.874 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:52.874 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 05:35:52.884 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176310360826582. ----------
17-03-18 05:35:52.884 -07 000000610 INF: Cycle	139	Tile	6	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:52.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37048, sync = True, waitForSettling = True)
17-03-18 05:35:52.884 -07 000000610 INF: Z Motor: Moving to -0.169595 mm, started at -0.176310 mm, distance = 6.72 um
17-03-18 05:35:52.884 -07 000000610 INF: FPGA: Xmit ZDACW 37048\n [Z Motor]
17-03-18 05:35:52.884 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:35:52.894 -07 000000610 INF: FPGA: 'ZDACW 37048' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:35:52.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:52.894 -07 000000592 INF: FPGA: Recv ZDACR 37048
17-03-18 05:35:52.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:52.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.054 -07 000000581 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:35:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:53.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.064 -07 000000561 INF: FPGA: Recv ZSGSRD 35690
17-03-18 05:35:53.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.074 -07 000000561 INF: FPGA: Recv ZSGSRD 35690
17-03-18 05:35:53.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.084 -07 000000592 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:35:53.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.094 -07 000000561 INF: FPGA: Recv ZSGSRD 35691
17-03-18 05:35:53.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.104 -07 000000581 INF: FPGA: Recv ZSGSRD 35693
17-03-18 05:35:53.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.114 -07 000000561 INF: FPGA: Recv ZSGSRD 35689
17-03-18 05:35:53.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.124 -07 000000561 INF: FPGA: Recv ZSGSRD 35687
17-03-18 05:35:53.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.134 -07 000000581 INF: FPGA: Recv ZSGSRD 35691
17-03-18 05:35:53.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:53.144 -07 000000592 INF: FPGA: Recv ZSGSRD 35692
17-03-18 05:35:53.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:53.154 -07 000000561 INF: FPGA: Recv ZPIEZORD 31504
17-03-18 05:35:53.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:53.164 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.2 V.
17-03-18 05:35:53.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35690 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35690 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35687 (-168.7 uncal um), Max = 35693 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:35:53.164 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35690, posNoise = 3, negNoise = 3
17-03-18 05:35:53.164 -07 000000610 INF: Z Motor: After move to -0.169595, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:53.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 05:35:53.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:53.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:53.164 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:53.164 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:53.164 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:53.164 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:53.164 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:53.164 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:53.164 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:53.164 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:53.164 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:35:53.164 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:53.164 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:53.164 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:53.174 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:35:53.174 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:53.174 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:35:53.174 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:35:53.174 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:35:53.174 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:35:53.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37225 150\n [Camera]
17-03-18 05:35:53.384 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:53.824 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:53.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:53.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:53.824 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:53.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:53.824 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:53.824 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:53.824 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:35:53.824 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:53.834 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:35:54.014 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37225 827
17-03-18 05:35:54.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:35:54.224 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:35:54.224 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:35:54.224 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:54.224 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:35:54.224 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:35:54.224 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:54.234 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:54.234 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:54.234 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:35:54.234 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:35:54.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:54.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:54.384 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:54.384 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:54.384 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-18 05:35:54.384 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:54.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:54.384 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:54.384 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:54.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 05:35:54.574 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:35:54.574 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:54.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37225 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-18 05:35:54.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:54.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169603483350584. ------
17-03-18 05:35:54.574 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:54.574 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17597 mm
17-03-18 05:35:54.574 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:54.584 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:54.584 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:35:54.584 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:35:54.584 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 05:35:54.584 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:54.584 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38441, sync = True, waitForSettling = False)
17-03-18 05:35:54.584 -07 000000512 INF: Z Motor: Moving to -0.175972 mm, started at -0.169603 mm, distance = -6.37 um
17-03-18 05:35:54.584 -07 000000479 INF: FPGA: Recv YRDPOS 131186
17-03-18 05:35:54.594 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:54.594 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:54.594 -07 000000561 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:54.594 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:54.594 -07 000000561 INF: Y Motor: Moving 1339 steps-14
17-03-18 05:35:54.604 -07 000000512 INF: FPGA: Xmit ZDACW 38441\n [Z Motor]
17-03-18 05:35:54.604 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:35:54.614 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:54.614 -07 000000512 INF: FPGA: 'ZDACW 38441' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:35:54.624 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:54.624 -07 000000618 INF: FPGA: Recv ZDACR 38441
17-03-18 05:35:54.634 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:35:54.634 -07 000000512 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:35:54.784 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:35:54.784 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:35:54.784 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:54.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:35:54.784 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:35:54.784 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:54.794 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:54.794 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:54.794 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:35:54.794 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 05:35:54.794 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:35:54.794 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:35:54.984 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:35:54.984 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:35:55.034 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:55.044 -07 000000512 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:35:55.044 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:35:55.044 -07 000000561 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:55.044 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:35:55.044 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 05:35:55.994 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:55.994 -07 000000608 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:35:56.004 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:56.004 -07 000000561 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:56.034 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:35:56.034 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:35:56.034 -07 000000561 INF: Y Motor: Moved to 64.8774 after 1450 ms (table move)
17-03-18 05:35:56.034 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175972 mm (DAC = 38441)
17-03-18 05:35:56.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.044 -07 000000479 INF: FPGA: Recv ZSGSRD 36684
17-03-18 05:35:56.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:35:56.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.054 -07 000000561 INF: FPGA: Recv ZSGSRD 36686
17-03-18 05:35:56.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.064 -07 000000480 INF: FPGA: Recv ZSGSRD 36679
17-03-18 05:35:56.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.074 -07 000000625 INF: FPGA: Recv ZSGSRD 36680
17-03-18 05:35:56.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.084 -07 000000611 INF: FPGA: Recv ZSGSRD 36679
17-03-18 05:35:56.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.094 -07 000000474 INF: FPGA: Recv ZSGSRD 36680
17-03-18 05:35:56.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.104 -07 000000480 INF: FPGA: Recv ZSGSRD 36683
17-03-18 05:35:56.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.114 -07 000000625 INF: FPGA: Recv ZSGSRD 36681
17-03-18 05:35:56.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.124 -07 000000467 INF: FPGA: Recv ZSGSRD 36686
17-03-18 05:35:56.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.134 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:56.134 -07 000000592 INF: FPGA: Recv ZSGSRD 36684
17-03-18 05:35:56.144 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.144 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:56.144 -07 000000480 INF: FPGA: Recv ZPIEZORD 32821
17-03-18 05:35:56.154 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.154 -07 000000626 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.5 V.
17-03-18 05:35:56.154 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36682 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36682 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36679 (-175.1 uncal um), Max = 36686 (-175.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:35:56.154 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36682, posNoise = 4, negNoise = 3
17-03-18 05:35:56.154 -07 000000626 INF: Z Motor: After move to -0.175972, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:56.154 -07 000000626 INF: Z Motor: Settle wait time = 1452 ms, measure time = 115 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:35:56.154 -07 000000626 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:35:56.194 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:35:56.194 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:35:56.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:56.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:56.194 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:56.194 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:56.194 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:35:56.194 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:56.194 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:56.194 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:35:56.204 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:35:56.204 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:35:56.204 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:35:56.204 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:35:56.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:35:56.254 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:35:56.554 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:35:56.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:35:56.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:35:56.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:35:56.594 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:35:56.594 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:35:56.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:35:56.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:35:56.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:56.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:35:56.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 05:35:56.694 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:56.694 -07 000000474 INF: Autofocus start
17-03-18 05:35:56.694 -07 000000474 INF: MeasureProfile start
17-03-18 05:35:56.694 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:56.704 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:35:56.704 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:35:56.704 -07 000000474 INF: MeasureProfile done
17-03-18 05:35:56.704 -07 000000474 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:35:56.704 -07 000000474 INF: Autofocus finished
17-03-18 05:35:56.774 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:35:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:35:56.904 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:35:56.904 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 05:35:56.914 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.17597630179521. ----------
17-03-18 05:35:56.914 -07 000000610 INF: Cycle	139	Tile	7	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:35:56.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36955, sync = True, waitForSettling = True)
17-03-18 05:35:56.914 -07 000000610 INF: Z Motor: Moving to -0.169169 mm, started at -0.175976 mm, distance = 6.81 um
17-03-18 05:35:56.924 -07 000000610 INF: FPGA: Xmit ZDACW 36955\n [Z Motor]
17-03-18 05:35:56.924 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:35:56.934 -07 000000610 INF: FPGA: 'ZDACW 36955' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:35:56.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:56.934 -07 000000467 INF: FPGA: Recv ZDACR 36955
17-03-18 05:35:56.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:56.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:35:57.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.094 -07 000000474 INF: FPGA: Recv ZSGSRD 35624
17-03-18 05:35:57.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35622
17-03-18 05:35:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.114 -07 000000625 INF: FPGA: Recv ZSGSRD 35624
17-03-18 05:35:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.124 -07 000000625 INF: FPGA: Recv ZSGSRD 35620
17-03-18 05:35:57.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.134 -07 000000625 INF: FPGA: Recv ZSGSRD 35622
17-03-18 05:35:57.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.144 -07 000000474 INF: FPGA: Recv ZSGSRD 35625
17-03-18 05:35:57.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35626
17-03-18 05:35:57.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.164 -07 000000467 INF: FPGA: Recv ZSGSRD 35623
17-03-18 05:35:57.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.174 -07 000000625 INF: FPGA: Recv ZSGSRD 35623
17-03-18 05:35:57.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:35:57.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:35:57.184 -07 000000467 INF: FPGA: Recv ZSGSRD 35622
17-03-18 05:35:57.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:35:57.194 -07 000000467 INF: FPGA: Recv ZPIEZORD 31423
17-03-18 05:35:57.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:35:57.204 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.3 V.
17-03-18 05:35:57.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35623 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35623 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35620 (-168.3 uncal um), Max = 35626 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:35:57.204 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35623, posNoise = 3, negNoise = 3
17-03-18 05:35:57.204 -07 000000610 INF: Z Motor: After move to -0.169169, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:35:57.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:35:57.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:35:57.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:35:57.204 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:35:57.204 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:35:57.204 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:35:57.204 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:35:57.204 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:35:57.204 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:35:57.204 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:35:57.204 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:35:57.204 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:35:57.204 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:35:57.214 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:35:57.214 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:35:57.214 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:35:57.214 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:35:57.214 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:35:57.214 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:35:57.224 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.970374,
17-03-18 05:35:57.224 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:35:57.224 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:35:57.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37132 150\n [Camera]
17-03-18 05:35:57.424 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:35:57.874 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:35:57.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:35:57.874 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:57.874 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:57.874 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:35:57.874 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:35:57.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:35:57.874 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:57.874 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:57.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:35:58.064 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37132 827
17-03-18 05:35:58.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:35:58.254 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:35:58.254 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:35:58.254 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:58.254 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 05:35:58.254 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:35:58.254 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:58.254 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:58.254 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:35:58.254 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:35:58.264 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:35:58.424 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:35:58.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:35:58.424 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:35:58.424 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:35:58.424 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:35:58.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:35:58.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:35:58.434 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:35:58.434 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:35:58.434 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:35:58.614 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:35:58.624 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:35:58.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37132 150' command took 2 ms to send, 1380 ms to get response, and 1394 ms overall
17-03-18 05:35:58.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:35:58.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169173061137086. ------
17-03-18 05:35:58.744 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:35:58.744 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17596 mm
17-03-18 05:35:58.744 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:35:58.744 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38437, sync = True, waitForSettling = False)
17-03-18 05:35:58.744 -07 000000474 INF: Z Motor: Moving to -0.175953 mm, started at -0.169173 mm, distance = -6.78 um
17-03-18 05:35:58.744 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:35:58.744 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:35:58.744 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 05:35:58.754 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:35:58.754 -07 000000474 INF: FPGA: Xmit ZDACW 38437\n [Z Motor]
17-03-18 05:35:58.754 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:35:58.764 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:58.764 -07 000000474 INF: FPGA: 'ZDACW 38437' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:35:58.764 -07 000000611 INF: FPGA: Recv YRDPOS 132869
17-03-18 05:35:58.774 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 05:35:58.774 -07 000000626 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:58.774 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:35:58.774 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:35:58.774 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:35:58.784 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:35:58.784 -07 000000581 INF: FPGA: Recv ZDACR 38437
17-03-18 05:35:58.794 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:35:58.794 -07 000000474 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:35:58.794 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:35:58.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:35:58.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:35:58.824 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:58.824 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:35:58.824 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:35:58.824 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:35:58.834 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:35:58.834 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:35:58.834 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:35:58.834 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:35:58.974 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:35:58.974 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:35:59.164 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 05:35:59.164 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:35:59.214 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:35:59.224 -07 000000512 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:35:59.224 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:35:59.224 -07 000000626 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:35:59.224 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:35:59.224 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 05:36:00.174 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:00.174 -07 000000611 INF: FPGA: Recv YRDPOS 134579
17-03-18 05:36:00.184 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:00.184 -07 000000626 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:00.214 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.010208, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:00.214 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:00.214 -07 000000626 INF: Y Motor: Moved to 65.7124 after 1470 ms (table move)
17-03-18 05:36:00.224 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175953 mm (DAC = 38437)
17-03-18 05:36:00.224 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.224 -07 000000474 INF: FPGA: Recv ZSGSRD 36683
17-03-18 05:36:00.234 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:00.234 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.234 -07 000000626 INF: FPGA: Recv ZSGSRD 36675
17-03-18 05:36:00.244 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.244 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36670
17-03-18 05:36:00.254 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.254 -07 000000474 INF: FPGA: Recv ZSGSRD 36673
17-03-18 05:36:00.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.264 -07 000000474 INF: FPGA: Recv ZSGSRD 36682
17-03-18 05:36:00.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.274 -07 000000625 INF: FPGA: Recv ZSGSRD 36678
17-03-18 05:36:00.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.284 -07 000000581 INF: FPGA: Recv ZSGSRD 36684
17-03-18 05:36:00.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.294 -07 000000625 INF: FPGA: Recv ZSGSRD 36683
17-03-18 05:36:00.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.304 -07 000000581 INF: FPGA: Recv ZSGSRD 36681
17-03-18 05:36:00.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:00.314 -07 000000625 INF: FPGA: Recv ZSGSRD 36679
17-03-18 05:36:00.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.324 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:00.324 -07 000000474 INF: FPGA: Recv ZPIEZORD 32811
17-03-18 05:36:00.334 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:00.334 -07 000000467 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.6 V.
17-03-18 05:36:00.334 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36679 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36680 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36670 (-175.0 uncal um), Max = 36684 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:36:00.334 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36679, posNoise = 5, negNoise = 9
17-03-18 05:36:00.334 -07 000000467 INF: Z Motor: After move to -0.175953, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:00.334 -07 000000467 INF: Z Motor: Settle wait time = 1474 ms, measure time = 108 ms (allowed 150 ms), total time = 1582 ms
17-03-18 05:36:00.334 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:00.384 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 05:36:00.384 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:00.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:00.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:00.384 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:00.384 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:00.384 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:00.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:00.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:00.384 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:00.394 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:00.394 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:00.404 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:36:00.404 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:36:00.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:00.454 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:00.744 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:00.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:00.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:00.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:00.784 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:00.784 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:00.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:36:00.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:36:00.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:00.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:00.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:36:00.894 -07 000000512 INF: Autofocus start
17-03-18 05:36:00.894 -07 000000512 INF: MeasureProfile start
17-03-18 05:36:00.894 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:00.894 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:00.904 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:00.904 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:00.904 -07 000000512 INF: MeasureProfile done
17-03-18 05:36:00.904 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:36:00.904 -07 000000512 INF: Autofocus finished
17-03-18 05:36:01.104 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:01.104 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:01.114 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71240234375, Z-position -0.175957029158785. ----------
17-03-18 05:36:01.114 -07 000000610 INF: Cycle	139	Tile	8	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:01.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36934, sync = True, waitForSettling = True)
17-03-18 05:36:01.114 -07 000000610 INF: Z Motor: Moving to -0.169073 mm, started at -0.175957 mm, distance = 6.88 um
17-03-18 05:36:01.114 -07 000000610 INF: FPGA: Xmit ZDACW 36934\n [Z Motor]
17-03-18 05:36:01.114 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:36:01.124 -07 000000610 INF: FPGA: 'ZDACW 36934' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:01.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:01.124 -07 000000625 INF: FPGA: Recv ZDACR 36934
17-03-18 05:36:01.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:01.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.284 -07 000000625 INF: FPGA: Recv ZSGSRD 35603
17-03-18 05:36:01.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35610
17-03-18 05:36:01.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.304 -07 000000467 INF: FPGA: Recv ZSGSRD 35612
17-03-18 05:36:01.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.314 -07 000000467 INF: FPGA: Recv ZSGSRD 35608
17-03-18 05:36:01.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.324 -07 000000467 INF: FPGA: Recv ZSGSRD 35613
17-03-18 05:36:01.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.334 -07 000000467 INF: FPGA: Recv ZSGSRD 35609
17-03-18 05:36:01.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.344 -07 000000581 INF: FPGA: Recv ZSGSRD 35616
17-03-18 05:36:01.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.354 -07 000000581 INF: FPGA: Recv ZSGSRD 35605
17-03-18 05:36:01.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:01.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.364 -07 000000581 INF: FPGA: Recv ZSGSRD 35606
17-03-18 05:36:01.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:01.374 -07 000000581 INF: FPGA: Recv ZSGSRD 35610
17-03-18 05:36:01.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:01.384 -07 000000581 INF: FPGA: Recv ZPIEZORD 31393
17-03-18 05:36:01.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:01.394 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 05:36:01.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35609 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35603 (-168.2 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:36:01.394 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35609, posNoise = 7, negNoise = 6
17-03-18 05:36:01.394 -07 000000610 INF: Z Motor: After move to -0.169073, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:01.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:36:01.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:01.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:01.394 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:01.394 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:01.404 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:01.404 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:01.404 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:01.404 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:01.404 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:36:01.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:01.404 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:36:01.404 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:01.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:36:01.404 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:01.404 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:01.404 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:01.414 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:36:01.414 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:36:01.414 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:36:01.414 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:36:01.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37111 150\n [Camera]
17-03-18 05:36:01.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:01.784 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:01.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:02.054 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:02.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:02.054 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:02.064 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:02.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:02.064 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:02.064 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:02.064 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:02.064 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:02.064 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:36:02.254 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37111 827
17-03-18 05:36:02.404 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:02.444 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 05:36:02.444 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:36:02.444 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:02.444 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:36:02.444 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:36:02.444 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:02.444 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:02.444 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:36:02.444 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:02.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:36:02.594 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.978563,
17-03-18 05:36:02.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:02.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:02.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:02.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:02.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:02.614 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:02.624 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:02.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:36:02.624 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:02.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:36:02.804 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:36:02.804 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:02.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37111 150' command took 2 ms to send, 1386 ms to get response, and 1389 ms overall
17-03-18 05:36:02.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:02.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71240234375, Z-Position -0.169083122167101. ------
17-03-18 05:36:02.924 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:02.924 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17547 mm
17-03-18 05:36:02.934 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:02.934 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38331, sync = True, waitForSettling = False)
17-03-18 05:36:02.934 -07 000000608 INF: Z Motor: Moving to -0.175468 mm, started at -0.169083 mm, distance = -6.38 um
17-03-18 05:36:02.934 -07 000000608 INF: FPGA: Xmit ZDACW 38331\n [Z Motor]
17-03-18 05:36:02.934 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:36:02.934 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7124 mm, delta = 0.8402 mm
17-03-18 05:36:02.934 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:02.934 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 05:36:02.934 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:36:02.944 -07 000000608 INF: FPGA: 'ZDACW 38331' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:02.944 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:02.944 -07 000000611 INF: FPGA: Recv ZDACR 38331
17-03-18 05:36:02.954 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:02.954 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:02.954 -07 000000608 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 05:36:02.954 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 05:36:02.964 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:02.964 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:36:02.964 -07 000000626 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:02.964 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:02.964 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:36:02.974 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:03.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:36:03.004 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:36:03.004 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:03.004 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 05:36:03.004 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 05:36:03.004 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:03.014 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:03.014 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:03.014 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:36:03.014 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:36:03.164 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:03.164 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 227 ms overall
17-03-18 05:36:03.344 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 05:36:03.344 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 05:36:03.394 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:03.404 -07 000000585 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:36:03.404 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:36:03.404 -07 000000626 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:03.404 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:36:03.404 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-18 05:36:04.354 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:04.354 -07 000000461 INF: FPGA: Recv YRDPOS 136269
17-03-18 05:36:04.364 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.364 -07 000000626 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:04.394 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:04.394 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:04.394 -07 000000626 INF: Y Motor: Moved to 66.5376 after 1461 ms (table move)
17-03-18 05:36:04.394 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175468 mm (DAC = 38331)
17-03-18 05:36:04.394 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.404 -07 000000479 INF: FPGA: Recv ZSGSRD 36606
17-03-18 05:36:04.404 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:36:04.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.404 -07 000000608 INF: FPGA: Recv ZSGSRD 36603
17-03-18 05:36:04.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:04.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.414 -07 000000608 INF: FPGA: Recv ZSGSRD 36610
17-03-18 05:36:04.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.424 -07 000000608 INF: FPGA: Recv ZSGSRD 36604
17-03-18 05:36:04.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.434 -07 000000626 INF: FPGA: Recv ZSGSRD 36603
17-03-18 05:36:04.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.444 -07 000000626 INF: FPGA: Recv ZSGSRD 36601
17-03-18 05:36:04.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.454 -07 000000626 INF: FPGA: Recv ZSGSRD 36605
17-03-18 05:36:04.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.464 -07 000000585 INF: FPGA: Recv ZSGSRD 36605
17-03-18 05:36:04.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.474 -07 000000585 INF: FPGA: Recv ZSGSRD 36605
17-03-18 05:36:04.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:04.484 -07 000000585 INF: FPGA: Recv ZSGSRD 36606
17-03-18 05:36:04.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:04.494 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:05.394 -07 000000592 INF: FPGA: Recv ZPIEZORD 32732
17-03-18 05:36:05.394 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 890 ms to get response, and 900 ms overall
17-03-18 05:36:05.394 -07 000000467 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.6 V.
17-03-18 05:36:05.394 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36605 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36605 (-174.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36601 (-174.6 uncal um), Max = 36610 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:36:05.394 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36605, posNoise = 5, negNoise = 4
17-03-18 05:36:05.394 -07 000000467 INF: Z Motor: After move to -0.175468, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:05.394 -07 000000467 INF: Z Motor: Settle wait time = 1465 ms, measure time = 993 ms (allowed 150 ms), total time = 2458 ms
17-03-18 05:36:05.394 -07 000000467 INF: Z Motor: Warning: Actual position measuring time = 993 ms, longer than max expected time of 150 ms
17-03-18 05:36:05.394 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2461 ms
17-03-18 05:36:05.394 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:05.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:05.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:05.404 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:05.404 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:05.404 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:05.404 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:05.404 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:05.404 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:05.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:05.414 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:05.414 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:36:05.414 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:36:05.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:05.464 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:05.764 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:05.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:05.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:05.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:05.804 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:05.804 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:05.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 05:36:05.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 05:36:05.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:05.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:05.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 05:36:05.904 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:05.904 -07 000000480 INF: Autofocus start
17-03-18 05:36:05.904 -07 000000480 INF: MeasureProfile start
17-03-18 05:36:05.904 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:05.914 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:36:05.914 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:05.914 -07 000000480 INF: MeasureProfile done
17-03-18 05:36:05.914 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:36:05.914 -07 000000480 INF: Autofocus finished
17-03-18 05:36:06.114 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:06.114 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:06.114 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175481637460295. ----------
17-03-18 05:36:06.114 -07 000000610 INF: Cycle	139	Tile	9	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:06.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36828, sync = True, waitForSettling = True)
17-03-18 05:36:06.124 -07 000000610 INF: Z Motor: Moving to -0.168588 mm, started at -0.175482 mm, distance = 6.89 um
17-03-18 05:36:06.124 -07 000000610 INF: FPGA: Xmit ZDACW 36828\n [Z Motor]
17-03-18 05:36:06.124 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 05:36:06.134 -07 000000610 INF: FPGA: 'ZDACW 36828' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:06.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:06.134 -07 000000480 INF: FPGA: Recv ZDACR 36828
17-03-18 05:36:06.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:06.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.294 -07 000000480 INF: FPGA: Recv ZSGSRD 35533
17-03-18 05:36:06.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:06.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:36:06.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.314 -07 000000618 INF: FPGA: Recv ZSGSRD 35538
17-03-18 05:36:06.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.324 -07 000000618 INF: FPGA: Recv ZSGSRD 35532
17-03-18 05:36:06.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.334 -07 000000618 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:36:06.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.344 -07 000000618 INF: FPGA: Recv ZSGSRD 35539
17-03-18 05:36:06.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.354 -07 000000618 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:36:06.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.364 -07 000000618 INF: FPGA: Recv ZSGSRD 35536
17-03-18 05:36:06.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.374 -07 000000618 INF: FPGA: Recv ZSGSRD 35526
17-03-18 05:36:06.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:06.384 -07 000000618 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:36:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:06.394 -07 000000618 INF: FPGA: Recv ZPIEZORD 31310
17-03-18 05:36:06.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:06.404 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.3 V.
17-03-18 05:36:06.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35533 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35532 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35526 (-167.7 uncal um), Max = 35539 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:36:06.404 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35533, posNoise = 6, negNoise = 7
17-03-18 05:36:06.404 -07 000000610 INF: Z Motor: After move to -0.168588, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:06.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:36:06.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:06.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:06.404 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:06.404 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:06.404 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:06.414 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:06.414 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:06.414 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:06.414 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:36:06.414 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:06.414 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:36:06.414 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:06.414 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:06.414 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:06.414 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:06.414 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:06.424 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:36:06.424 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:36:06.424 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:36:06.424 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:36:06.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37005 150\n [Camera]
17-03-18 05:36:06.634 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:06.784 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:06.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:07.074 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:07.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:07.074 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:07.074 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:07.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:07.074 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:07.084 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:07.084 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:07.084 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:07.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:36:07.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37005 827
17-03-18 05:36:07.414 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:07.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 05:36:07.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 05:36:07.464 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:07.464 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:07.474 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:36:07.474 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:36:07.474 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:07.474 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:36:07.474 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:07.474 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:36:07.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:07.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:07.624 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:07.624 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:07.624 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:36:07.634 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:07.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:07.634 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:07.634 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:07.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-18 05:36:07.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:36:07.824 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:07.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37005 150' command took 2 ms to send, 1380 ms to get response, and 1392 ms overall
17-03-18 05:36:07.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:07.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168594882044327. ------
17-03-18 05:36:07.824 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:07.824 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17534 mm
17-03-18 05:36:07.824 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:07.834 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:07.834 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:36:07.834 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 05:36:07.834 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:07.834 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38303, sync = True, waitForSettling = False)
17-03-18 05:36:07.834 -07 000000561 INF: Z Motor: Moving to -0.175340 mm, started at -0.168595 mm, distance = -6.75 um
17-03-18 05:36:07.834 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:36:07.834 -07 000000626 INF: FPGA: Recv YRDPOS 136270
17-03-18 05:36:07.844 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:07.844 -07 000000461 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:07.844 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:07.844 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:07.844 -07 000000461 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:36:07.854 -07 000000561 INF: FPGA: Xmit ZDACW 38303\n [Z Motor]
17-03-18 05:36:07.854 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:36:07.864 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:07.864 -07 000000561 INF: FPGA: 'ZDACW 38303' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:36:07.874 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:07.874 -07 000000608 INF: FPGA: Recv ZDACR 38303
17-03-18 05:36:07.884 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:36:07.884 -07 000000561 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:36:07.954 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.007176,
17-03-18 05:36:08.034 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:36:08.034 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:36:08.034 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:08.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:36:08.034 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:36:08.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:08.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:08.044 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:36:08.044 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:36:08.044 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:08.044 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 05:36:08.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:36:08.234 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 05:36:08.234 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:36:08.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:08.294 -07 000000592 INF: FPGA: Recv YRDPOS 137975
17-03-18 05:36:08.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:36:08.294 -07 000000461 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:08.294 -07 000000461 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 05:36:08.294 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-18 05:36:09.244 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:09.244 -07 000000592 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:36:09.254 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:09.254 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:09.284 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:09.284 -07 000000461 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:36:09.284 -07 000000461 INF: Y Motor: Moved to 67.3711 after 1453 ms (table move)
17-03-18 05:36:09.284 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175340 mm (DAC = 38303)
17-03-18 05:36:09.284 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36582
17-03-18 05:36:09.294 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:36:09.294 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36590
17-03-18 05:36:09.304 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.304 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.304 -07 000000608 INF: FPGA: Recv ZSGSRD 36582
17-03-18 05:36:09.314 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.314 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.314 -07 000000461 INF: FPGA: Recv ZSGSRD 36577
17-03-18 05:36:09.324 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.324 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.324 -07 000000480 INF: FPGA: Recv ZSGSRD 36579
17-03-18 05:36:09.334 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.334 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.334 -07 000000618 INF: FPGA: Recv ZSGSRD 36581
17-03-18 05:36:09.344 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.344 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.344 -07 000000618 INF: FPGA: Recv ZSGSRD 36589
17-03-18 05:36:09.354 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.354 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.354 -07 000000618 INF: FPGA: Recv ZSGSRD 36588
17-03-18 05:36:09.364 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.364 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.364 -07 000000618 INF: FPGA: Recv ZSGSRD 36584
17-03-18 05:36:09.374 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.374 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:09.374 -07 000000461 INF: FPGA: Recv ZSGSRD 36584
17-03-18 05:36:09.384 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.384 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:09.384 -07 000000618 INF: FPGA: Recv ZPIEZORD 32686
17-03-18 05:36:09.394 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:09.394 -07 000000611 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.6 V.
17-03-18 05:36:09.394 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36584 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36583 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36577 (-174.4 uncal um), Max = 36590 (-174.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:36:09.394 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36584, posNoise = 6, negNoise = 7
17-03-18 05:36:09.394 -07 000000611 INF: Z Motor: After move to -0.175340, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:09.394 -07 000000611 INF: Z Motor: Settle wait time = 1456 ms, measure time = 103 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:36:09.394 -07 000000611 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:09.444 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 05:36:09.444 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:09.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:09.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:09.454 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:09.454 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:09.454 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:09.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:09.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:09.454 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:09.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:36:09.464 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:09.474 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 05:36:09.474 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:36:09.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:09.524 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:09.824 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:09.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:09.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:09.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:36:09.864 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:09.864 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:09.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 05:36:09.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:36:09.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:09.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:09.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:36:09.964 -07 000000561 INF: Autofocus start
17-03-18 05:36:09.964 -07 000000561 INF: MeasureProfile start
17-03-18 05:36:09.964 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:09.964 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:09.974 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:09.974 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:09.974 -07 000000561 INF: MeasureProfile done
17-03-18 05:36:09.974 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:36:09.974 -07 000000561 INF: Autofocus finished
17-03-18 05:36:10.174 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:10.174 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:36:10.174 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175346729005318. ----------
17-03-18 05:36:10.174 -07 000000610 INF: Cycle	139	Tile	10	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:10.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-18 05:36:10.184 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.175347 mm, distance = 6.80 um
17-03-18 05:36:10.184 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-18 05:36:10.184 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:36:10.194 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:10.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:10.194 -07 000000611 INF: FPGA: Recv ZDACR 36818
17-03-18 05:36:10.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:10.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:10.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.354 -07 000000608 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:36:10.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:10.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.364 -07 000000611 INF: FPGA: Recv ZSGSRD 35526
17-03-18 05:36:10.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.374 -07 000000467 INF: FPGA: Recv ZSGSRD 35527
17-03-18 05:36:10.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.384 -07 000000479 INF: FPGA: Recv ZSGSRD 35530
17-03-18 05:36:10.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.394 -07 000000608 INF: FPGA: Recv ZSGSRD 35531
17-03-18 05:36:10.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.404 -07 000000626 INF: FPGA: Recv ZSGSRD 35529
17-03-18 05:36:10.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.414 -07 000000592 INF: FPGA: Recv ZSGSRD 35526
17-03-18 05:36:10.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.424 -07 000000608 INF: FPGA: Recv ZSGSRD 35525
17-03-18 05:36:10.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.434 -07 000000592 INF: FPGA: Recv ZSGSRD 35526
17-03-18 05:36:10.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:10.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35528
17-03-18 05:36:10.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:10.454 -07 000000474 INF: FPGA: Recv ZPIEZORD 31269
17-03-18 05:36:10.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:10.464 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-18 05:36:10.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35525 (-167.7 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:36:10.464 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 3, negNoise = 3
17-03-18 05:36:10.464 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:10.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:36:10.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:10.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:10.464 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:10.464 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:10.464 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:10.464 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:10.464 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:10.464 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:10.464 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:10.464 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:10.464 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:36:10.464 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:10.464 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:10.464 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:10.474 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:36:10.474 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:10.484 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:36:10.484 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:36:10.484 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:36:10.484 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:36:10.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36995 150\n [Camera]
17-03-18 05:36:10.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:11.134 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:11.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:11.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:11.134 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:11.134 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:36:11.134 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:11.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:11.134 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:11.134 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:11.134 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:36:11.324 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36995 827
17-03-18 05:36:11.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:11.534 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:36:11.534 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:36:11.534 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:11.534 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:11.534 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:36:11.534 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:36:11.534 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:36:11.534 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:11.544 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:11.544 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:36:11.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:11.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:11.694 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:11.694 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:11.694 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:11.694 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 05:36:11.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:11.694 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:11.694 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:11.694 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:36:11.784 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:11.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:11.884 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-18 05:36:11.884 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:11.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36995 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-18 05:36:11.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:11.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168562760983618. ------
17-03-18 05:36:11.884 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:11.884 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17478 mm
17-03-18 05:36:11.884 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:11.894 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:36:11.894 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 05:36:11.894 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:11.894 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:11.894 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:36:11.894 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38180, sync = True, waitForSettling = False)
17-03-18 05:36:11.894 -07 000000625 INF: Z Motor: Moving to -0.174777 mm, started at -0.168563 mm, distance = -6.21 um
17-03-18 05:36:11.894 -07 000000474 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:36:11.904 -07 000000625 INF: FPGA: Xmit ZDACW 38180\n [Z Motor]
17-03-18 05:36:12.024 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:12.024 -07 000000467 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:12.024 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:12.024 -07 000000467 INF: Y Motor: Moving 1346 steps-25
17-03-18 05:36:12.024 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:36:12.034 -07 000000625 INF: FPGA: 'ZDACW 38180' command took 122 ms to send, 0 ms to get response, and 137 ms overall
17-03-18 05:36:12.034 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:12.044 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:12.054 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:12.054 -07 000000608 INF: FPGA: Recv ZDACR 38180
17-03-18 05:36:12.064 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:12.064 -07 000000625 INF: Z Motor: MoveAbsStepped took 167 ms (did NOT wait for settling yet))
17-03-18 05:36:12.094 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:36:12.094 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:36:12.094 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:12.094 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:36:12.094 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:36:12.094 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:12.094 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:12.094 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:36:12.094 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:36:12.104 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:36:12.234 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:12.234 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 339 ms overall
17-03-18 05:36:12.414 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:36:12.414 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 05:36:12.474 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:12.474 -07 000000585 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:36:12.484 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:12.484 -07 000000467 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:12.484 -07 000000467 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:36:12.484 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.842 mm, average velocity = 2.130 mm/sec
17-03-18 05:36:13.314 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.004458,
17-03-18 05:36:13.434 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:13.434 -07 000000480 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:36:13.444 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:13.444 -07 000000467 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:13.474 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:13.474 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:13.474 -07 000000467 INF: Y Motor: Moved to 68.2041 after 1579 ms (table move)
17-03-18 05:36:13.474 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174777 mm (DAC = 38180)
17-03-18 05:36:13.474 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.484 -07 000000625 INF: FPGA: Recv ZSGSRD 36505
17-03-18 05:36:13.484 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 05:36:13.484 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.484 -07 000000467 INF: FPGA: Recv ZSGSRD 36499
17-03-18 05:36:13.494 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:13.494 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.494 -07 000000480 INF: FPGA: Recv ZSGSRD 36491
17-03-18 05:36:13.504 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.504 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36491
17-03-18 05:36:13.514 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.514 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.514 -07 000000480 INF: FPGA: Recv ZSGSRD 36498
17-03-18 05:36:13.524 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.524 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.524 -07 000000608 INF: FPGA: Recv ZSGSRD 36500
17-03-18 05:36:13.534 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.534 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.534 -07 000000585 INF: FPGA: Recv ZSGSRD 36498
17-03-18 05:36:13.544 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.544 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.544 -07 000000625 INF: FPGA: Recv ZSGSRD 36504
17-03-18 05:36:13.554 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.554 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.554 -07 000000592 INF: FPGA: Recv ZSGSRD 36492
17-03-18 05:36:13.564 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.564 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:13.564 -07 000000625 INF: FPGA: Recv ZSGSRD 36501
17-03-18 05:36:13.574 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.574 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:13.574 -07 000000480 INF: FPGA: Recv ZPIEZORD 32599
17-03-18 05:36:13.584 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:13.584 -07 000000611 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.826 V. Piezo Error = -8.6 V.
17-03-18 05:36:13.584 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36498 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36498 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36491 (-173.9 uncal um), Max = 36505 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:36:13.584 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36498, posNoise = 7, negNoise = 7
17-03-18 05:36:13.584 -07 000000611 INF: Z Motor: After move to -0.174777, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:13.584 -07 000000611 INF: Z Motor: Settle wait time = 1582 ms, measure time = 106 ms (allowed 150 ms), total time = 1688 ms
17-03-18 05:36:13.584 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:13.634 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1740 ms
17-03-18 05:36:13.634 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:13.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:13.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:13.634 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:13.634 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:13.634 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:13.634 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:13.634 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:13.634 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:13.644 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:13.644 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:13.654 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:36:13.654 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 05:36:13.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:13.704 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:14.004 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:14.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:14.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:14.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:14.044 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:14.044 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:14.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:36:14.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 05:36:14.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:14.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:36:14.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:36:14.144 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:14.144 -07 000000626 INF: Autofocus start
17-03-18 05:36:14.144 -07 000000626 INF: MeasureProfile start
17-03-18 05:36:14.144 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:14.154 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:36:14.154 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:14.154 -07 000000626 INF: MeasureProfile done
17-03-18 05:36:14.154 -07 000000626 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:36:14.154 -07 000000626 INF: Autofocus finished
17-03-18 05:36:14.354 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:14.354 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:14.354 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174794246761126. ----------
17-03-18 05:36:14.354 -07 000000610 INF: Cycle	139	Tile	11	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:14.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36713, sync = True, waitForSettling = True)
17-03-18 05:36:14.364 -07 000000610 INF: Z Motor: Moving to -0.168061 mm, started at -0.174794 mm, distance = 6.73 um
17-03-18 05:36:14.364 -07 000000610 INF: FPGA: Xmit ZDACW 36713\n [Z Motor]
17-03-18 05:36:14.364 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:36:14.374 -07 000000610 INF: FPGA: 'ZDACW 36713' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:14.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:14.374 -07 000000467 INF: FPGA: Recv ZDACR 36713
17-03-18 05:36:14.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:14.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.534 -07 000000626 INF: FPGA: Recv ZSGSRD 35453
17-03-18 05:36:14.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:14.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.544 -07 000000585 INF: FPGA: Recv ZSGSRD 35445
17-03-18 05:36:14.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.554 -07 000000611 INF: FPGA: Recv ZSGSRD 35450
17-03-18 05:36:14.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:36:14.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.574 -07 000000626 INF: FPGA: Recv ZSGSRD 35448
17-03-18 05:36:14.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35459
17-03-18 05:36:14.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.594 -07 000000611 INF: FPGA: Recv ZSGSRD 35454
17-03-18 05:36:14.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.604 -07 000000592 INF: FPGA: Recv ZSGSRD 35451
17-03-18 05:36:14.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.614 -07 000000626 INF: FPGA: Recv ZSGSRD 35451
17-03-18 05:36:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:14.624 -07 000000608 INF: FPGA: Recv ZSGSRD 35445
17-03-18 05:36:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:14.634 -07 000000611 INF: FPGA: Recv ZPIEZORD 31212
17-03-18 05:36:14.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:14.644 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.3 V.
17-03-18 05:36:14.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35451 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35451 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35445 (-167.2 uncal um), Max = 35459 (-167.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:36:14.644 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35451, posNoise = 8, negNoise = 6
17-03-18 05:36:14.644 -07 000000610 INF: Z Motor: After move to -0.168061, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:14.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:36:14.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:14.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:14.644 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:14.644 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:14.644 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:14.644 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:14.644 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:14.644 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:14.644 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:36:14.644 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:14.644 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:36:14.644 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:14.644 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:14.644 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:14.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:14.654 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:14.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:36:14.654 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:36:14.654 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:36:14.654 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:36:14.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36889 150\n [Camera]
17-03-18 05:36:14.864 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:15.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:15.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:15.304 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:15.304 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:15.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:15.304 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:15.314 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:15.314 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:15.314 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:15.314 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:36:15.494 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36889 827
17-03-18 05:36:15.644 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:15.684 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 05:36:15.684 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 05:36:15.684 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:15.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 05:36:15.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 05:36:15.684 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:15.694 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:15.694 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:15.694 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:36:15.694 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:36:15.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:15.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:15.864 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:15.864 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:15.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:15.864 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:15.874 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:15.874 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:36:15.874 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:15.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:36:16.054 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:36:16.054 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:16.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36889 150' command took 4 ms to send, 1383 ms to get response, and 1391 ms overall
17-03-18 05:36:16.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:16.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168068096648703. ------
17-03-18 05:36:16.174 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17481 mm
17-03-18 05:36:16.174 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:16.184 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:16.184 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:36:16.184 -07 000000585 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 05:36:16.184 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:16.184 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38187, sync = True, waitForSettling = False)
17-03-18 05:36:16.184 -07 000000479 INF: Z Motor: Moving to -0.174809 mm, started at -0.168068 mm, distance = -6.74 um
17-03-18 05:36:16.194 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:16.194 -07 000000479 INF: FPGA: Xmit ZDACW 38187\n [Z Motor]
17-03-18 05:36:16.194 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:36:16.204 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:16.204 -07 000000479 INF: FPGA: 'ZDACW 38187' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:36:16.204 -07 000000592 INF: FPGA: Recv YRDPOS 139682
17-03-18 05:36:16.214 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 05:36:16.214 -07 000000585 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:16.214 -07 000000585 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:16.214 -07 000000585 INF: Y Motor: Moving 1342 steps-17
17-03-18 05:36:16.214 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:16.224 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:16.224 -07 000000461 INF: FPGA: Recv ZDACR 38187
17-03-18 05:36:16.234 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:16.234 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:16.234 -07 000000479 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:36:16.264 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:36:16.264 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:36:16.264 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:16.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:36:16.274 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:36:16.274 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:16.274 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:16.274 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:16.274 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:36:16.284 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:36:16.414 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:16.414 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:36:16.604 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:36:16.604 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:36:16.654 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:16.664 -07 000000625 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:36:16.664 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:36:16.664 -07 000000585 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:16.664 -07 000000585 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 05:36:16.664 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 05:36:16.784 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:16.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:17.614 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:17.614 -07 000000592 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:36:17.624 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:17.624 -07 000000585 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:17.654 -07 000000585 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:17.654 -07 000000585 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:17.654 -07 000000585 INF: Y Motor: Moved to 69.0259 after 1469 ms (table move)
17-03-18 05:36:17.654 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174809 mm (DAC = 38187)
17-03-18 05:36:17.654 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.654 -07 000000608 INF: FPGA: Recv ZSGSRD 36507
17-03-18 05:36:17.664 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:36:17.664 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.664 -07 000000461 INF: FPGA: Recv ZSGSRD 36501
17-03-18 05:36:17.674 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.674 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.674 -07 000000512 INF: FPGA: Recv ZSGSRD 36500
17-03-18 05:36:17.684 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.684 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.684 -07 000000467 INF: FPGA: Recv ZSGSRD 36494
17-03-18 05:36:17.694 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.694 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.694 -07 000000581 INF: FPGA: Recv ZSGSRD 36496
17-03-18 05:36:17.704 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.704 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.704 -07 000000625 INF: FPGA: Recv ZSGSRD 36503
17-03-18 05:36:17.714 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.714 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.714 -07 000000626 INF: FPGA: Recv ZSGSRD 36512
17-03-18 05:36:17.724 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.724 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.724 -07 000000581 INF: FPGA: Recv ZSGSRD 36503
17-03-18 05:36:17.734 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.734 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.734 -07 000000611 INF: FPGA: Recv ZSGSRD 36503
17-03-18 05:36:17.744 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.744 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:17.744 -07 000000467 INF: FPGA: Recv ZSGSRD 36501
17-03-18 05:36:17.754 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.754 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:17.754 -07 000000461 INF: FPGA: Recv ZPIEZORD 32621
17-03-18 05:36:17.764 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:17.764 -07 000000480 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.6 V.
17-03-18 05:36:17.764 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36502 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36502 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36494 (-173.9 uncal um), Max = 36512 (-174.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:36:17.764 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36502, posNoise = 10, negNoise = 8
17-03-18 05:36:17.764 -07 000000480 INF: Z Motor: After move to -0.174809, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:17.764 -07 000000480 INF: Z Motor: Settle wait time = 1472 ms, measure time = 104 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:36:17.764 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:17.814 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 05:36:17.814 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:17.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:17.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:17.814 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:17.814 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:17.814 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:17.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:17.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:17.814 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:17.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 05:36:17.824 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:17.834 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:36:17.834 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:36:17.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:17.884 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:18.184 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:18.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:18.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:18.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:18.214 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:18.224 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:18.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 05:36:18.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:36:18.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:18.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:18.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:36:18.324 -07 000000512 INF: Autofocus start
17-03-18 05:36:18.324 -07 000000512 INF: MeasureProfile start
17-03-18 05:36:18.334 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:18.334 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:18.344 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 8 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:36:18.344 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:18.344 -07 000000512 INF: MeasureProfile done
17-03-18 05:36:18.344 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:36:18.344 -07 000000512 INF: Autofocus finished
17-03-18 05:36:18.544 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:18.544 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:18.544 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174819943609693. ----------
17-03-18 05:36:18.544 -07 000000610 INF: Cycle	139	Tile	12	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:18.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36702, sync = True, waitForSettling = True)
17-03-18 05:36:18.554 -07 000000610 INF: Z Motor: Moving to -0.168011 mm, started at -0.174820 mm, distance = 6.81 um
17-03-18 05:36:18.554 -07 000000610 INF: FPGA: Xmit ZDACW 36702\n [Z Motor]
17-03-18 05:36:18.554 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:36:18.564 -07 000000610 INF: FPGA: 'ZDACW 36702' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:36:18.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:18.564 -07 000000480 INF: FPGA: Recv ZDACR 36702
17-03-18 05:36:18.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:18.674 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.993549,
17-03-18 05:36:18.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.724 -07 000000608 INF: FPGA: Recv ZSGSRD 35444
17-03-18 05:36:18.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:18.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.734 -07 000000461 INF: FPGA: Recv ZSGSRD 35443
17-03-18 05:36:18.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.744 -07 000000561 INF: FPGA: Recv ZSGSRD 35452
17-03-18 05:36:18.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.754 -07 000000461 INF: FPGA: Recv ZSGSRD 35448
17-03-18 05:36:18.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.764 -07 000000625 INF: FPGA: Recv ZSGSRD 35446
17-03-18 05:36:18.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.774 -07 000000581 INF: FPGA: Recv ZSGSRD 35447
17-03-18 05:36:18.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.784 -07 000000625 INF: FPGA: Recv ZSGSRD 35442
17-03-18 05:36:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.794 -07 000000608 INF: FPGA: Recv ZSGSRD 35445
17-03-18 05:36:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.804 -07 000000561 INF: FPGA: Recv ZSGSRD 35440
17-03-18 05:36:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:18.814 -07 000000581 INF: FPGA: Recv ZSGSRD 35446
17-03-18 05:36:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:18.824 -07 000000480 INF: FPGA: Recv ZPIEZORD 31227
17-03-18 05:36:18.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:18.834 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-18 05:36:18.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35446 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35440 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:36:18.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 7, negNoise = 5
17-03-18 05:36:18.834 -07 000000610 INF: Z Motor: After move to -0.168011, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:18.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:36:18.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:18.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:18.834 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:18.834 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:18.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:18.834 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:18.834 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:18.834 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:18.834 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:36:18.834 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:18.834 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:36:18.834 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:18.844 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:18.844 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:18.844 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:18.844 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:18.854 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:36:18.854 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:36:18.854 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:36:18.854 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:36:18.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36879 150\n [Camera]
17-03-18 05:36:19.054 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:19.494 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:19.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:19.494 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:19.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:19.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:19.504 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:19.504 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:19.504 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:19.504 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:19.504 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:36:19.694 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36879 827
17-03-18 05:36:19.844 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:36:19.894 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:36:19.894 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:36:19.894 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:19.904 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:19.904 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:36:19.904 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:36:19.904 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:36:19.904 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:19.904 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:19.914 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:36:20.054 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:20.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:20.054 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:20.054 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:20.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:36:20.054 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:20.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:20.054 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:20.054 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:20.054 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:36:20.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:36:20.244 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:20.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36879 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-18 05:36:20.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:20.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168029551375852. ------
17-03-18 05:36:20.254 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:20.254 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17427 mm
17-03-18 05:36:20.254 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:20.254 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:20.254 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38070, sync = True, waitForSettling = False)
17-03-18 05:36:20.254 -07 000000461 INF: Z Motor: Moving to -0.174273 mm, started at -0.168030 mm, distance = -6.24 um
17-03-18 05:36:20.254 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:36:20.254 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 05:36:20.264 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:20.264 -07 000000461 INF: FPGA: Xmit ZDACW 38070\n [Z Motor]
17-03-18 05:36:20.264 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:36:20.274 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:20.274 -07 000000461 INF: FPGA: 'ZDACW 38070' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:36:20.274 -07 000000626 INF: FPGA: Recv YRDPOS 141365
17-03-18 05:36:20.284 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:36:20.284 -07 000000608 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:20.284 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:20.284 -07 000000608 INF: Y Motor: Moving 1355 steps-34
17-03-18 05:36:20.284 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:20.294 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:20.294 -07 000000618 INF: FPGA: Recv ZDACR 38070
17-03-18 05:36:20.304 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:20.304 -07 000000461 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:36:20.304 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:20.444 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:36:20.444 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:36:20.444 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:20.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:36:20.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:36:20.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:20.444 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:20.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:36:20.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:36:20.454 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:36:20.484 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:20.484 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:36:20.674 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:36:20.674 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:36:20.724 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:20.734 -07 000000480 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:36:20.744 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:20.744 -07 000000608 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:20.744 -07 000000608 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 05:36:20.744 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.127 mm/sec
17-03-18 05:36:21.694 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:21.694 -07 000000561 INF: FPGA: Recv YRDPOS 143077
17-03-18 05:36:21.704 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:21.704 -07 000000608 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:21.734 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:21.734 -07 000000608 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:21.734 -07 000000608 INF: Y Motor: Moved to 69.8618 after 1477 ms (table move)
17-03-18 05:36:21.734 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174273 mm (DAC = 38070)
17-03-18 05:36:21.734 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.744 -07 000000625 INF: FPGA: Recv ZSGSRD 36420
17-03-18 05:36:21.744 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 05:36:21.744 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.744 -07 000000561 INF: FPGA: Recv ZSGSRD 36419
17-03-18 05:36:21.754 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:21.754 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.754 -07 000000561 INF: FPGA: Recv ZSGSRD 36410
17-03-18 05:36:21.764 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.764 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.764 -07 000000625 INF: FPGA: Recv ZSGSRD 36412
17-03-18 05:36:21.774 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.774 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.774 -07 000000625 INF: FPGA: Recv ZSGSRD 36412
17-03-18 05:36:21.784 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.784 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:21.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:21.784 -07 000000480 INF: FPGA: Recv ZSGSRD 36421
17-03-18 05:36:21.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.794 -07 000000480 INF: FPGA: Recv ZSGSRD 36427
17-03-18 05:36:21.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.804 -07 000000480 INF: FPGA: Recv ZSGSRD 36415
17-03-18 05:36:21.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.814 -07 000000480 INF: FPGA: Recv ZSGSRD 36426
17-03-18 05:36:21.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.824 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:21.824 -07 000000480 INF: FPGA: Recv ZSGSRD 36414
17-03-18 05:36:21.834 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.834 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:21.834 -07 000000480 INF: FPGA: Recv ZPIEZORD 32519
17-03-18 05:36:21.844 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:21.844 -07 000000581 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.6 V.
17-03-18 05:36:21.844 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36418 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36417 (-173.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36410 (-173.3 uncal um), Max = 36427 (-173.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:36:21.844 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36418, posNoise = 9, negNoise = 8
17-03-18 05:36:21.844 -07 000000581 INF: Z Motor: After move to -0.174273, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:21.844 -07 000000581 INF: Z Motor: Settle wait time = 1482 ms, measure time = 105 ms (allowed 150 ms), total time = 1587 ms
17-03-18 05:36:21.844 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:21.894 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 05:36:21.894 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:21.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:21.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:21.894 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:21.894 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:21.894 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:21.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:21.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:21.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:21.904 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:21.904 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:21.904 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:36:21.904 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:36:21.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:21.954 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:22.254 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:22.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:22.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:22.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:36:22.294 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:22.294 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:22.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:36:22.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:36:22.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:22.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:22.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:36:22.394 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:22.394 -07 000000480 INF: Autofocus start
17-03-18 05:36:22.394 -07 000000480 INF: MeasureProfile start
17-03-18 05:36:22.394 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:22.404 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:36:22.404 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:22.404 -07 000000480 INF: MeasureProfile done
17-03-18 05:36:22.404 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:36:22.404 -07 000000480 INF: Autofocus finished
17-03-18 05:36:22.604 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:22.604 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:22.604 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174280309789785. ----------
17-03-18 05:36:22.604 -07 000000610 INF: Cycle	139	Tile	13	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:22.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36603, sync = True, waitForSettling = True)
17-03-18 05:36:22.614 -07 000000610 INF: Z Motor: Moving to -0.167558 mm, started at -0.174280 mm, distance = 6.72 um
17-03-18 05:36:22.614 -07 000000610 INF: FPGA: Xmit ZDACW 36603\n [Z Motor]
17-03-18 05:36:22.614 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:36:22.624 -07 000000610 INF: FPGA: 'ZDACW 36603' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:36:22.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:22.624 -07 000000608 INF: FPGA: Recv ZDACR 36603
17-03-18 05:36:22.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:22.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35372
17-03-18 05:36:22.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.794 -07 000000608 INF: FPGA: Recv ZSGSRD 35371
17-03-18 05:36:22.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.804 -07 000000474 INF: FPGA: Recv ZSGSRD 35372
17-03-18 05:36:22.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.814 -07 000000608 INF: FPGA: Recv ZSGSRD 35368
17-03-18 05:36:22.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.824 -07 000000512 INF: FPGA: Recv ZSGSRD 35375
17-03-18 05:36:22.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.844 -07 000000467 INF: FPGA: Recv ZSGSRD 35377
17-03-18 05:36:22.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:36:22.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.854 -07 000000461 INF: FPGA: Recv ZSGSRD 35374
17-03-18 05:36:22.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.864 -07 000000608 INF: FPGA: Recv ZSGSRD 35375
17-03-18 05:36:22.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.874 -07 000000467 INF: FPGA: Recv ZSGSRD 35371
17-03-18 05:36:22.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:22.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35369
17-03-18 05:36:22.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:22.894 -07 000000608 INF: FPGA: Recv ZPIEZORD 31112
17-03-18 05:36:22.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:22.904 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.585 V. Piezo Error = -9.4 V.
17-03-18 05:36:22.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35372 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35372 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35368 (-166.7 uncal um), Max = 35377 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:36:22.904 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35372, posNoise = 5, negNoise = 4
17-03-18 05:36:22.904 -07 000000610 INF: Z Motor: After move to -0.167558, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:22.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:36:22.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:22.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:22.904 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:22.904 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:22.904 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:22.904 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:22.904 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:22.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:22.904 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:36:22.904 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:22.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:22.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:22.914 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:36:22.914 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:22.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:22.914 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:22.924 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:36:22.924 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:36:22.924 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:36:22.924 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:36:22.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36779 150\n [Camera]
17-03-18 05:36:23.124 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:23.574 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:23.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:23.574 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:23.574 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:23.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:36:23.574 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:23.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:23.574 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:23.574 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:23.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:36:23.764 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36779 827
17-03-18 05:36:23.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:23.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 05:36:23.964 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:36:23.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:23.964 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:36:23.964 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 05:36:23.964 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:23.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:23.974 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:36:23.974 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:23.974 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:36:24.034 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.030322,
17-03-18 05:36:24.124 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:24.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:24.124 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:24.124 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:24.124 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:36:24.124 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:24.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:24.134 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:24.134 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:24.134 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:36:24.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:36:24.314 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:24.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36779 150' command took 2 ms to send, 1378 ms to get response, and 1389 ms overall
17-03-18 05:36:24.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:24.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167560583889504. ------
17-03-18 05:36:24.324 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:24.444 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17401 mm
17-03-18 05:36:24.444 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:24.444 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:36:24.444 -07 000000618 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 05:36:24.454 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:24.524 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:36:24.524 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:36:24.524 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:24.534 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:36:24.534 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:36:24.534 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:24.534 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:24.534 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:36:24.534 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:36:24.544 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 05:36:24.544 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38012, sync = True, waitForSettling = False)
17-03-18 05:36:24.544 -07 000000581 INF: Z Motor: Moving to -0.174008 mm, started at -0.167561 mm, distance = -6.45 um
17-03-18 05:36:24.544 -07 000000581 INF: FPGA: Xmit ZDACW 38012\n [Z Motor]
17-03-18 05:36:24.554 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:24.554 -07 000000625 INF: FPGA: Recv YRDPOS 143078
17-03-18 05:36:24.554 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 91 ms to get response, and 101 ms overall
17-03-18 05:36:24.554 -07 000000618 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:24.554 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:36:24.554 -07 000000581 INF: FPGA: 'ZDACW 38012' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:36:24.554 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:24.554 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 121 ms to send, 101 ms to get response, and 226 ms overall
17-03-18 05:36:24.554 -07 000000625 INF: FPGA: Recv ZDACR 38012
17-03-18 05:36:24.554 -07 000000618 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:24.554 -07 000000618 INF: Y Motor: Moving 1344 steps-22
17-03-18 05:36:24.564 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:24.564 -07 000000581 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-18 05:36:24.564 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:24.574 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:24.764 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:24.764 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 05:36:24.944 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:36:24.944 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 05:36:24.994 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:25.004 -07 000000592 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:36:25.004 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:36:25.004 -07 000000618 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:25.004 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:36:25.004 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.841 mm, average velocity = 2.156 mm/sec
17-03-18 05:36:25.954 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:25.954 -07 000000479 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:36:25.964 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:25.964 -07 000000618 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:25.994 -07 000000618 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:25.994 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:25.994 -07 000000618 INF: Y Motor: Moved to 70.6875 after 1542 ms (table move)
17-03-18 05:36:25.994 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174008 mm (DAC = 38012)
17-03-18 05:36:25.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:25.994 -07 000000585 INF: FPGA: Recv ZSGSRD 36386
17-03-18 05:36:26.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:36:26.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.004 -07 000000618 INF: FPGA: Recv ZSGSRD 36375
17-03-18 05:36:26.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.014 -07 000000461 INF: FPGA: Recv ZSGSRD 36367
17-03-18 05:36:26.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.024 -07 000000585 INF: FPGA: Recv ZSGSRD 36366
17-03-18 05:36:26.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.034 -07 000000581 INF: FPGA: Recv ZSGSRD 36382
17-03-18 05:36:26.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.044 -07 000000585 INF: FPGA: Recv ZSGSRD 36374
17-03-18 05:36:26.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.054 -07 000000618 INF: FPGA: Recv ZSGSRD 36377
17-03-18 05:36:26.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.064 -07 000000625 INF: FPGA: Recv ZSGSRD 36383
17-03-18 05:36:26.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.074 -07 000000592 INF: FPGA: Recv ZSGSRD 36382
17-03-18 05:36:26.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.084 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:26.084 -07 000000618 INF: FPGA: Recv ZSGSRD 36373
17-03-18 05:36:26.094 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.094 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:26.094 -07 000000592 INF: FPGA: Recv ZPIEZORD 32456
17-03-18 05:36:26.104 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.104 -07 000000474 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.800 V. Piezo Error = -8.7 V.
17-03-18 05:36:26.104 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36376 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36376 (-173.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36366 (-173.1 uncal um), Max = 36386 (-173.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:36:26.104 -07 000000474 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36376, posNoise = 10, negNoise = 10
17-03-18 05:36:26.104 -07 000000474 INF: Z Motor: After move to -0.174008, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:26.104 -07 000000474 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-18 05:36:26.104 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:26.154 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-18 05:36:26.154 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:26.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:26.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:26.154 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:26.154 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:26.154 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:26.154 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:26.154 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:36:26.154 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:26.154 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:26.154 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:26.164 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:36:26.164 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:36:26.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:26.214 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:26.514 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:26.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:26.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:26.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:26.554 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:26.554 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:26.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:36:26.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:36:26.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:26.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:26.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:36:26.654 -07 000000585 INF: Autofocus start
17-03-18 05:36:26.654 -07 000000585 INF: MeasureProfile start
17-03-18 05:36:26.654 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:26.654 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:26.664 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:26.664 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:26.664 -07 000000585 INF: MeasureProfile done
17-03-18 05:36:26.664 -07 000000585 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:36:26.664 -07 000000585 INF: Autofocus finished
17-03-18 05:36:26.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:26.864 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:26.864 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:26.864 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.174010492879832. ----------
17-03-18 05:36:26.864 -07 000000610 INF: Cycle	139	Tile	14	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:26.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36527, sync = True, waitForSettling = True)
17-03-18 05:36:26.874 -07 000000610 INF: Z Motor: Moving to -0.167210 mm, started at -0.174010 mm, distance = 6.80 um
17-03-18 05:36:26.874 -07 000000610 INF: FPGA: Xmit ZDACW 36527\n [Z Motor]
17-03-18 05:36:26.874 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:36:26.884 -07 000000610 INF: FPGA: 'ZDACW 36527' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:26.884 -07 000000479 INF: FPGA: Recv ZDACR 36527
17-03-18 05:36:26.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:26.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:27.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.044 -07 000000479 INF: FPGA: Recv ZSGSRD 35321
17-03-18 05:36:27.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:27.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.054 -07 000000592 INF: FPGA: Recv ZSGSRD 35321
17-03-18 05:36:27.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35317
17-03-18 05:36:27.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35323
17-03-18 05:36:27.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.084 -07 000000625 INF: FPGA: Recv ZSGSRD 35319
17-03-18 05:36:27.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.094 -07 000000461 INF: FPGA: Recv ZSGSRD 35318
17-03-18 05:36:27.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.104 -07 000000592 INF: FPGA: Recv ZSGSRD 35323
17-03-18 05:36:27.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.114 -07 000000461 INF: FPGA: Recv ZSGSRD 35316
17-03-18 05:36:27.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.124 -07 000000592 INF: FPGA: Recv ZSGSRD 35314
17-03-18 05:36:27.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:27.134 -07 000000474 INF: FPGA: Recv ZSGSRD 35312
17-03-18 05:36:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:27.144 -07 000000618 INF: FPGA: Recv ZPIEZORD 31039
17-03-18 05:36:27.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:27.154 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.4 V.
17-03-18 05:36:27.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35318 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35318 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35312 (-166.3 uncal um), Max = 35323 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:36:27.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35318, posNoise = 5, negNoise = 6
17-03-18 05:36:27.154 -07 000000610 INF: Z Motor: After move to -0.167210, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:27.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:36:27.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:27.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:27.154 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:27.154 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:27.154 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:27.154 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:27.154 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:27.154 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:27.154 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:36:27.154 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:27.154 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:27.154 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:27.154 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:27.154 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:27.154 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:27.164 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:27.164 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:36:27.164 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:36:27.174 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:36:27.174 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:36:27.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36704 150\n [Camera]
17-03-18 05:36:27.374 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:27.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:27.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:27.814 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:27.814 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:27.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:27.824 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:27.824 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:27.824 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:27.824 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:27.824 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:36:28.004 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36704 827
17-03-18 05:36:28.154 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:28.204 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:36:28.204 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 05:36:28.204 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:28.204 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:28.204 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:36:28.204 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:36:28.204 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:28.214 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:28.214 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:36:28.214 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:36:28.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:28.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:28.374 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:28.374 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:28.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:28.374 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:28.384 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:28.384 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:36:28.384 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:28.384 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:36:28.564 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:36:28.564 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:28.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36704 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-18 05:36:28.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:28.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167213676433848. ------
17-03-18 05:36:28.684 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:28.774 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:36:28.774 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:36:28.784 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:28.784 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:36:28.784 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:36:28.784 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:28.784 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:28.784 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:28.784 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 05:36:28.794 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 05:36:28.794 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17394 mm
17-03-18 05:36:28.794 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:28.804 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:28.804 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 110 ms to get response, and 115 ms overall
17-03-18 05:36:28.804 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:28.804 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:36:28.804 -07 000000592 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 05:36:28.814 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:29.314 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37998, sync = True, waitForSettling = False)
17-03-18 05:36:29.314 -07 000000561 INF: Z Motor: Moving to -0.173944 mm, started at -0.167214 mm, distance = -6.73 um
17-03-18 05:36:29.314 -07 000000561 INF: FPGA: Xmit ZDACW 37998\n [Z Motor]
17-03-18 05:36:30.314 -07 000000611 INF: FPGA: Recv YRDPOS 144768
17-03-18 05:36:30.314 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:30.314 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:36:30.314 -07 000000561 INF: FPGA: 'ZDACW 37998' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 05:36:30.314 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:30.314 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1490 ms to get response, and 1508 ms overall
17-03-18 05:36:30.314 -07 000000592 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:30.314 -07 000000592 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:30.314 -07 000000592 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:36:30.314 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1500 ms to get response, and 1509 ms overall
17-03-18 05:36:30.314 -07 000000611 INF: FPGA: Recv ZDACR 37998
17-03-18 05:36:30.324 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:30.324 -07 000000561 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 05:36:30.324 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:30.624 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.026244,
17-03-18 05:36:30.694 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:36:30.694 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:36:30.754 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:30.754 -07 000000585 INF: FPGA: Recv YRDPOS 146468
17-03-18 05:36:30.764 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:30.764 -07 000000592 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:30.764 -07 000000592 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:36:30.764 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.189 mm/sec
17-03-18 05:36:31.714 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:31.714 -07 000000611 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:36:31.724 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.724 -07 000000592 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:31.754 -07 000000592 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:31.754 -07 000000592 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:36:31.754 -07 000000592 INF: Y Motor: Moved to 71.5181 after 2949 ms (table move)
17-03-18 05:36:31.754 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173944 mm (DAC = 37998)
17-03-18 05:36:31.754 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.754 -07 000000626 INF: FPGA: Recv ZSGSRD 36369
17-03-18 05:36:31.764 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:36:31.764 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.764 -07 000000611 INF: FPGA: Recv ZSGSRD 36372
17-03-18 05:36:31.774 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.774 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.774 -07 000000608 INF: FPGA: Recv ZSGSRD 36365
17-03-18 05:36:31.784 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.784 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.784 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:31.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:31.784 -07 000000467 INF: FPGA: Recv ZSGSRD 36359
17-03-18 05:36:31.794 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.794 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.794 -07 000000608 INF: FPGA: Recv ZSGSRD 36360
17-03-18 05:36:31.804 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.804 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.804 -07 000000467 INF: FPGA: Recv ZSGSRD 36365
17-03-18 05:36:31.814 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.814 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.814 -07 000000608 INF: FPGA: Recv ZSGSRD 36372
17-03-18 05:36:31.824 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.824 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.824 -07 000000467 INF: FPGA: Recv ZSGSRD 36365
17-03-18 05:36:31.834 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.834 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36370
17-03-18 05:36:31.844 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.844 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:31.844 -07 000000592 INF: FPGA: Recv ZSGSRD 36377
17-03-18 05:36:31.854 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.854 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:31.854 -07 000000608 INF: FPGA: Recv ZPIEZORD 32461
17-03-18 05:36:31.864 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:31.864 -07 000000618 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.6 V.
17-03-18 05:36:31.864 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36367 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36367 (-173.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36359 (-173.0 uncal um), Max = 36377 (-173.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:36:31.864 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36367, posNoise = 10, negNoise = 8
17-03-18 05:36:31.864 -07 000000618 INF: Z Motor: After move to -0.173944, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:31.864 -07 000000618 INF: Z Motor: Settle wait time = 2444 ms, measure time = 104 ms (allowed 150 ms), total time = 2548 ms
17-03-18 05:36:31.864 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:31.914 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3112 ms
17-03-18 05:36:31.914 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:31.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:31.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:31.914 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:31.914 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:31.924 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:31.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:31.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:36:31.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:31.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:31.924 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:31.934 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:36:31.934 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:36:31.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:31.974 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:32.274 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:32.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:32.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:32.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:32.314 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:32.314 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:32.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:36:32.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:36:32.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:32.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:32.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:36:32.514 -07 000000618 INF: Autofocus start
17-03-18 05:36:32.514 -07 000000618 INF: MeasureProfile start
17-03-18 05:36:32.514 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:32.514 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:32.524 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:36:32.524 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:32.524 -07 000000618 INF: MeasureProfile done
17-03-18 05:36:32.524 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:36:32.524 -07 000000618 INF: Autofocus finished
17-03-18 05:36:32.724 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:32.724 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:32.724 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173952674970556. ----------
17-03-18 05:36:32.724 -07 000000610 INF: Cycle	139	Tile	15	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:32.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36495, sync = True, waitForSettling = True)
17-03-18 05:36:32.734 -07 000000610 INF: Z Motor: Moving to -0.167063 mm, started at -0.173953 mm, distance = 6.89 um
17-03-18 05:36:32.734 -07 000000610 INF: FPGA: Xmit ZDACW 36495\n [Z Motor]
17-03-18 05:36:32.734 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:36:32.744 -07 000000610 INF: FPGA: 'ZDACW 36495' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:32.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:32.744 -07 000000611 INF: FPGA: Recv ZDACR 36495
17-03-18 05:36:32.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:32.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.904 -07 000000512 INF: FPGA: Recv ZSGSRD 35298
17-03-18 05:36:32.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:32.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.914 -07 000000618 INF: FPGA: Recv ZSGSRD 35299
17-03-18 05:36:32.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.924 -07 000000512 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:36:32.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.934 -07 000000592 INF: FPGA: Recv ZSGSRD 35291
17-03-18 05:36:32.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.944 -07 000000512 INF: FPGA: Recv ZSGSRD 35302
17-03-18 05:36:32.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.954 -07 000000608 INF: FPGA: Recv ZSGSRD 35298
17-03-18 05:36:32.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:32.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.964 -07 000000467 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:36:32.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.974 -07 000000592 INF: FPGA: Recv ZSGSRD 35294
17-03-18 05:36:32.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.984 -07 000000467 INF: FPGA: Recv ZSGSRD 35297
17-03-18 05:36:32.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:32.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:32.994 -07 000000618 INF: FPGA: Recv ZSGSRD 35296
17-03-18 05:36:33.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:33.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:33.004 -07 000000467 INF: FPGA: Recv ZPIEZORD 31011
17-03-18 05:36:33.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:33.014 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.4 V.
17-03-18 05:36:33.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35291 (-166.2 uncal um), Max = 35302 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:36:33.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 6, negNoise = 5
17-03-18 05:36:33.014 -07 000000610 INF: Z Motor: After move to -0.167063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:33.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:36:33.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:33.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:33.014 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:33.014 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:33.014 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:33.014 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:33.014 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:33.014 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:33.014 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:33.014 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:33.014 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:36:33.014 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:33.024 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:33.024 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:33.024 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:36:33.024 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:33.034 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:36:33.034 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:36:33.034 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:36:33.034 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:36:33.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36671 150\n [Camera]
17-03-18 05:36:33.244 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:33.684 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:33.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:33.684 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:33.684 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:33.684 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:33.684 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:33.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:33.684 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:33.694 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:33.694 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:36:33.874 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36671 827
17-03-18 05:36:34.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:34.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:36:34.084 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:36:34.084 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:34.084 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:34.084 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:36:34.084 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:36:34.084 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:36:34.084 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:34.094 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:34.094 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:36:34.234 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:34.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:34.234 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:34.234 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:34.234 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:36:34.244 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:34.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:34.244 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:34.244 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:34.244 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:36:34.424 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:36:34.434 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:34.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36671 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-18 05:36:34.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:34.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.16707234376673. ------
17-03-18 05:36:34.434 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:34.644 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 05:36:34.644 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:36:34.644 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:34.644 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:36:34.644 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:36:34.644 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:34.654 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:34.654 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:36:34.654 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 05:36:34.664 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:36:34.664 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17349 mm
17-03-18 05:36:34.664 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:34.674 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:34.674 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 232 ms to get response, and 237 ms overall
17-03-18 05:36:34.674 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:34.674 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:36:34.674 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 05:36:34.684 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:35.314 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37898, sync = True, waitForSettling = False)
17-03-18 05:36:35.314 -07 000000625 INF: Z Motor: Moving to -0.173486 mm, started at -0.167072 mm, distance = -6.41 um
17-03-18 05:36:35.314 -07 000000625 INF: FPGA: Xmit ZDACW 37898\n [Z Motor]
17-03-18 05:36:36.314 -07 000000461 INF: FPGA: Recv YRDPOS 146469
17-03-18 05:36:36.314 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:36.314 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:36:36.314 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1620 ms to get response, and 1636 ms overall
17-03-18 05:36:36.314 -07 000000626 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:36.314 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:36.314 -07 000000626 INF: Y Motor: Moving 1351 steps-31
17-03-18 05:36:36.314 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1630 ms to get response, and 1637 ms overall
17-03-18 05:36:36.314 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:36.314 -07 000000625 INF: FPGA: 'ZDACW 37898' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 05:36:36.324 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:36.324 -07 000000461 INF: FPGA: Recv ZDACR 37898
17-03-18 05:36:36.334 -07 000000625 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:36:36.334 -07 000000625 INF: Z Motor: MoveAbsStepped took 1018 ms (did NOT wait for settling yet))
17-03-18 05:36:36.624 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.02213,
17-03-18 05:36:36.694 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:36:36.694 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 05:36:36.744 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:36.744 -07 000000480 INF: FPGA: Recv YRDPOS 148169
17-03-18 05:36:36.754 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:36.754 -07 000000626 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:36.754 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:36:36.754 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.234 mm/sec
17-03-18 05:36:36.784 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:36.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:37.704 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:37.704 -07 000000480 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:36:37.714 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:37.714 -07 000000626 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:37.744 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:37.744 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:36:37.744 -07 000000626 INF: Y Motor: Moved to 72.3486 after 3067 ms (table move)
17-03-18 05:36:37.744 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173486 mm (DAC = 37898)
17-03-18 05:36:37.744 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.744 -07 000000474 INF: FPGA: Recv ZSGSRD 36304
17-03-18 05:36:37.754 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:36:37.754 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.754 -07 000000581 INF: FPGA: Recv ZSGSRD 36299
17-03-18 05:36:37.764 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.764 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.764 -07 000000626 INF: FPGA: Recv ZSGSRD 36297
17-03-18 05:36:37.774 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.774 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.774 -07 000000480 INF: FPGA: Recv ZSGSRD 36293
17-03-18 05:36:37.784 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.784 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.784 -07 000000581 INF: FPGA: Recv ZSGSRD 36297
17-03-18 05:36:37.794 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.794 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.794 -07 000000626 INF: FPGA: Recv ZSGSRD 36296
17-03-18 05:36:37.804 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.804 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.804 -07 000000561 INF: FPGA: Recv ZSGSRD 36288
17-03-18 05:36:37.814 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.814 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.814 -07 000000474 INF: FPGA: Recv ZSGSRD 36294
17-03-18 05:36:37.824 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.824 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.824 -07 000000618 INF: FPGA: Recv ZSGSRD 36296
17-03-18 05:36:37.834 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.834 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:37.834 -07 000000474 INF: FPGA: Recv ZSGSRD 36298
17-03-18 05:36:37.844 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.844 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:37.844 -07 000000561 INF: FPGA: Recv ZPIEZORD 32348
17-03-18 05:36:37.854 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:37.854 -07 000000585 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.7 V.
17-03-18 05:36:37.854 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36296 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36296 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36288 (-172.6 uncal um), Max = 36304 (-172.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:36:37.854 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36296, posNoise = 8, negNoise = 8
17-03-18 05:36:37.854 -07 000000585 INF: Z Motor: After move to -0.173486, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:37.854 -07 000000585 INF: Z Motor: Settle wait time = 2432 ms, measure time = 108 ms (allowed 150 ms), total time = 2540 ms
17-03-18 05:36:37.854 -07 000000585 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:37.904 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3231 ms
17-03-18 05:36:37.904 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:37.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:37.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:37.904 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:37.904 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:37.904 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:37.904 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:37.904 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:37.904 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:37.914 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:37.914 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:37.924 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:36:37.924 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 05:36:37.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:37.974 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:38.274 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:38.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:38.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:38.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:36:38.314 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:38.314 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:38.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 05:36:38.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:36:38.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:38.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:38.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:36:38.414 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:38.414 -07 000000461 INF: Autofocus start
17-03-18 05:36:38.414 -07 000000461 INF: MeasureProfile start
17-03-18 05:36:38.414 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:38.424 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:38.424 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:38.424 -07 000000461 INF: MeasureProfile done
17-03-18 05:36:38.424 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 05:36:38.424 -07 000000461 INF: Autofocus finished
17-03-18 05:36:38.624 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:38.624 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:38.624 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173496555908491. ----------
17-03-18 05:36:38.624 -07 000000610 INF: Cycle	139	Tile	16	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:38.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36413, sync = True, waitForSettling = True)
17-03-18 05:36:38.634 -07 000000610 INF: Z Motor: Moving to -0.166688 mm, started at -0.173497 mm, distance = 6.81 um
17-03-18 05:36:38.634 -07 000000610 INF: FPGA: Xmit ZDACW 36413\n [Z Motor]
17-03-18 05:36:38.634 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:36:38.644 -07 000000610 INF: FPGA: 'ZDACW 36413' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:38.644 -07 000000561 INF: FPGA: Recv ZDACR 36413
17-03-18 05:36:38.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:38.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.804 -07 000000626 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:36:38.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:38.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.814 -07 000000618 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:36:38.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.824 -07 000000585 INF: FPGA: Recv ZSGSRD 35238
17-03-18 05:36:38.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.834 -07 000000474 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:36:38.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.844 -07 000000561 INF: FPGA: Recv ZSGSRD 35240
17-03-18 05:36:38.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.854 -07 000000474 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:36:38.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.864 -07 000000561 INF: FPGA: Recv ZSGSRD 35235
17-03-18 05:36:38.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.874 -07 000000581 INF: FPGA: Recv ZSGSRD 35239
17-03-18 05:36:38.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.884 -07 000000480 INF: FPGA: Recv ZSGSRD 35240
17-03-18 05:36:38.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:38.894 -07 000000461 INF: FPGA: Recv ZSGSRD 35236
17-03-18 05:36:38.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:38.904 -07 000000626 INF: FPGA: Recv ZPIEZORD 30936
17-03-18 05:36:38.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:38.914 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.5 V.
17-03-18 05:36:38.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35238 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35239 (-165.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35235 (-165.8 uncal um), Max = 35240 (-165.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:36:38.914 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35238, posNoise = 2, negNoise = 3
17-03-18 05:36:38.914 -07 000000610 INF: Z Motor: After move to -0.166688, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:38.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:36:38.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:38.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:38.914 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:38.914 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:38.914 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:38.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:38.914 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:38.914 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:38.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:36:38.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:38.914 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:38.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:38.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:36:38.914 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:38.924 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:38.924 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:38.934 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 05:36:38.934 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:36:38.934 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:36:38.934 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:36:38.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36589 150\n [Camera]
17-03-18 05:36:39.134 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:39.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:39.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:39.584 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:39.584 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:39.584 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:36:39.584 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:39.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:39.584 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:39.584 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:39.584 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:36:39.774 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36589 827
17-03-18 05:36:39.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:39.974 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:36:39.974 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:36:39.974 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:39.974 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:36:39.974 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:36:39.974 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:39.974 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:39.974 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:39.974 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:36:39.984 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:36:40.134 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:40.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:40.134 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:40.134 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:40.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:36:40.144 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:40.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:40.144 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:40.144 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:40.144 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:36:40.324 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:36:40.324 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:40.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36589 150' command took 2 ms to send, 1379 ms to get response, and 1390 ms overall
17-03-18 05:36:40.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:40.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166699739462508. ------
17-03-18 05:36:40.454 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:40.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:36:40.524 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:36:40.524 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:40.524 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:36:40.524 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:36:40.524 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:40.534 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:36:40.534 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:36:40.534 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:36:40.534 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:36:40.544 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17322 mm
17-03-18 05:36:40.544 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:40.544 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:40.544 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 89 ms to get response, and 91 ms overall
17-03-18 05:36:40.544 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:40.554 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:36:40.554 -07 000000585 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 05:36:40.564 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:41.564 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37840, sync = True, waitForSettling = False)
17-03-18 05:36:41.564 -07 000000479 INF: Z Motor: Moving to -0.173220 mm, started at -0.166700 mm, distance = -6.52 um
17-03-18 05:36:41.564 -07 000000479 INF: FPGA: Xmit ZDACW 37840\n [Z Motor]
17-03-18 05:36:42.094 -07 000000512 INF: FPGA: Recv YRDPOS 148170
17-03-18 05:36:42.094 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:42.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:36:42.094 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:42.094 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1530 ms to get response, and 1540 ms overall
17-03-18 05:36:42.094 -07 000000479 INF: FPGA: 'ZDACW 37840' command took 0 ms to send, 520 ms to get response, and 528 ms overall
17-03-18 05:36:42.094 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:42.094 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:42.094 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1520 ms to get response, and 1540 ms overall
17-03-18 05:36:42.094 -07 000000585 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:42.094 -07 000000585 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:42.094 -07 000000585 INF: Y Motor: Moving 1350 steps-30
17-03-18 05:36:42.094 -07 000000512 INF: FPGA: Recv ZDACR 37840
17-03-18 05:36:42.104 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:42.104 -07 000000479 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-18 05:36:42.104 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:42.404 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.014009,
17-03-18 05:36:42.474 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 05:36:42.474 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 05:36:42.524 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:42.534 -07 000000581 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:36:42.534 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:36:42.534 -07 000000585 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:42.534 -07 000000585 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 05:36:42.534 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-18 05:36:43.484 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:43.484 -07 000000581 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:36:43.494 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:43.494 -07 000000585 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:43.524 -07 000000585 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:43.524 -07 000000585 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:43.524 -07 000000585 INF: Y Motor: Moved to 73.1748 after 2971 ms (table move)
17-03-18 05:36:43.524 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173220 mm (DAC = 37840)
17-03-18 05:36:43.524 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.524 -07 000000608 INF: FPGA: Recv ZSGSRD 36255
17-03-18 05:36:43.534 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:36:43.534 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.534 -07 000000512 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:36:43.544 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.544 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.544 -07 000000608 INF: FPGA: Recv ZSGSRD 36248
17-03-18 05:36:43.554 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.554 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.554 -07 000000581 INF: FPGA: Recv ZSGSRD 36261
17-03-18 05:36:43.564 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.564 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.564 -07 000000608 INF: FPGA: Recv ZSGSRD 36262
17-03-18 05:36:43.574 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.574 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.574 -07 000000581 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:36:43.584 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.584 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.584 -07 000000592 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:36:43.594 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.594 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.594 -07 000000585 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:36:43.604 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.604 -07 000000467 INF: FPGA: Recv ZSGSRD 36253
17-03-18 05:36:43.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.614 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:43.614 -07 000000581 INF: FPGA: Recv ZSGSRD 36250
17-03-18 05:36:43.624 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.624 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:43.624 -07 000000467 INF: FPGA: Recv ZPIEZORD 32294
17-03-18 05:36:43.634 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:43.634 -07 000000618 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.8 V.
17-03-18 05:36:43.634 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36253 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36250 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36248 (-172.3 uncal um), Max = 36262 (-172.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:36:43.634 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36253, posNoise = 9, negNoise = 5
17-03-18 05:36:43.634 -07 000000618 INF: Z Motor: After move to -0.173220, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:43.634 -07 000000618 INF: Z Motor: Settle wait time = 1964 ms, measure time = 104 ms (allowed 150 ms), total time = 2068 ms
17-03-18 05:36:43.634 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:43.684 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3136 ms
17-03-18 05:36:43.684 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:43.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:43.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:43.684 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:43.684 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:43.684 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:43.684 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:43.684 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:43.684 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:43.694 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:43.694 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:43.704 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:36:43.704 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 05:36:43.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:43.754 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:44.044 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:44.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:44.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:44.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:44.094 -07 000000581 INF: FPGA: Recv @CAMSNAP 381
17-03-18 05:36:44.094 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:44.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 05:36:44.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:36:44.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:44.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:44.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:36:44.194 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:44.194 -07 000000608 INF: Autofocus start
17-03-18 05:36:44.194 -07 000000608 INF: MeasureProfile start
17-03-18 05:36:44.194 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:44.204 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:44.204 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:44.204 -07 000000608 INF: MeasureProfile done
17-03-18 05:36:44.204 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:36:44.204 -07 000000608 INF: Autofocus finished
17-03-18 05:36:44.404 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:44.404 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:44.404 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173220314786395. ----------
17-03-18 05:36:44.404 -07 000000610 INF: Cycle	139	Tile	17	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:44.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36337, sync = True, waitForSettling = True)
17-03-18 05:36:44.414 -07 000000610 INF: Z Motor: Moving to -0.166340 mm, started at -0.173220 mm, distance = 6.88 um
17-03-18 05:36:44.414 -07 000000610 INF: FPGA: Xmit ZDACW 36337\n [Z Motor]
17-03-18 05:36:44.414 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:36:44.424 -07 000000610 INF: FPGA: 'ZDACW 36337' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:44.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:44.424 -07 000000585 INF: FPGA: Recv ZDACR 36337
17-03-18 05:36:44.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35179
17-03-18 05:36:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.614 -07 000000618 INF: FPGA: Recv ZSGSRD 35187
17-03-18 05:36:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.634 -07 000000611 INF: FPGA: Recv ZSGSRD 35185
17-03-18 05:36:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:36:44.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.664 -07 000000608 INF: FPGA: Recv ZSGSRD 35184
17-03-18 05:36:44.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:44.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35181
17-03-18 05:36:44.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.684 -07 000000585 INF: FPGA: Recv ZSGSRD 35175
17-03-18 05:36:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.694 -07 000000467 INF: FPGA: Recv ZSGSRD 35191
17-03-18 05:36:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.704 -07 000000608 INF: FPGA: Recv ZSGSRD 35190
17-03-18 05:36:44.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.714 -07 000000581 INF: FPGA: Recv ZSGSRD 35179
17-03-18 05:36:44.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:44.724 -07 000000592 INF: FPGA: Recv ZSGSRD 35176
17-03-18 05:36:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:44.734 -07 000000467 INF: FPGA: Recv ZPIEZORD 30878
17-03-18 05:36:44.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:44.744 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.5 V.
17-03-18 05:36:44.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35183 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35182 (-165.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35175 (-165.4 uncal um), Max = 35191 (-165.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:36:44.744 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35183, posNoise = 8, negNoise = 8
17-03-18 05:36:44.744 -07 000000610 INF: Z Motor: After move to -0.166340, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:44.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 05:36:44.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:44.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:44.744 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:44.744 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:44.744 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:44.744 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:44.744 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:44.744 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:44.744 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:44.744 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:44.744 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:36:44.744 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:44.754 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:44.754 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:44.754 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:44.754 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:44.764 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:36:44.764 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:36:44.764 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:36:44.764 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:36:44.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36514 150\n [Camera]
17-03-18 05:36:44.974 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:45.414 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:45.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:45.414 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:45.414 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:45.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:45.414 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:45.414 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:45.414 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:45.424 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:45.424 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:36:45.604 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36514 827
17-03-18 05:36:45.754 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:45.814 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:36:45.814 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:36:45.814 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:45.814 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:36:45.814 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:36:45.814 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:45.814 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:45.814 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:36:45.824 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:45.824 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:36:45.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:45.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:45.964 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:45.974 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:45.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:45.974 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:45.974 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:45.974 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:36:45.984 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:45.984 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:36:46.154 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:36:46.164 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:46.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36514 150' command took 2 ms to send, 1380 ms to get response, and 1389 ms overall
17-03-18 05:36:46.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:46.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166346407794711. ------
17-03-18 05:36:46.294 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:46.294 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17214 mm
17-03-18 05:36:46.294 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:46.354 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 05:36:46.354 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 05:36:46.354 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:46.354 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:46.354 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:36:46.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 05:36:46.364 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 05:36:46.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:46.364 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:46.364 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:46.364 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 69 ms to get response, and 70 ms overall
17-03-18 05:36:46.364 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:46.374 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:36:46.374 -07 000000611 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 05:36:46.374 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:36:46.384 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:46.384 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37605, sync = True, waitForSettling = False)
17-03-18 05:36:46.384 -07 000000512 INF: Z Motor: Moving to -0.172145 mm, started at -0.166346 mm, distance = -5.80 um
17-03-18 05:36:46.394 -07 000000512 INF: FPGA: Xmit ZDACW 37605\n [Z Motor]
17-03-18 05:36:47.184 -07 000000625 INF: FPGA: Recv YRDPOS 149862
17-03-18 05:36:47.184 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 05:36:47.184 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:47.184 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:47.184 -07 000000512 INF: FPGA: 'ZDACW 37605' command took 0 ms to send, 780 ms to get response, and 796 ms overall
17-03-18 05:36:47.184 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:47.184 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:47.184 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 790 ms to get response, and 809 ms overall
17-03-18 05:36:47.184 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 800 ms to get response, and 811 ms overall
17-03-18 05:36:47.184 -07 000000611 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:47.184 -07 000000611 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:47.184 -07 000000611 INF: Y Motor: Moving 1356 steps-36
17-03-18 05:36:47.184 -07 000000625 INF: FPGA: Recv ZDACR 37605
17-03-18 05:36:47.194 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:47.194 -07 000000512 INF: Z Motor: MoveAbsStepped took 806 ms (did NOT wait for settling yet))
17-03-18 05:36:47.194 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:47.564 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:36:47.564 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 05:36:47.614 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:47.614 -07 000000512 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:36:47.624 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:47.624 -07 000000611 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:47.624 -07 000000611 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 05:36:47.624 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.848 mm, average velocity = 2.196 mm/sec
17-03-18 05:36:47.764 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.970374,
17-03-18 05:36:48.574 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:48.574 -07 000000625 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:36:48.584 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:48.584 -07 000000611 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:48.604 -07 000000611 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:48.604 -07 000000611 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:48.604 -07 000000611 INF: Y Motor: Moved to 74.0068 after 2233 ms (table move)
17-03-18 05:36:48.604 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172145 mm (DAC = 37605)
17-03-18 05:36:48.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36092
17-03-18 05:36:48.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:36:48.614 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.614 -07 000000611 INF: FPGA: Recv ZSGSRD 36091
17-03-18 05:36:48.624 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.624 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.624 -07 000000512 INF: FPGA: Recv ZSGSRD 36082
17-03-18 05:36:48.634 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.634 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36080
17-03-18 05:36:48.644 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.644 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.644 -07 000000608 INF: FPGA: Recv ZSGSRD 36082
17-03-18 05:36:48.654 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.654 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.654 -07 000000625 INF: FPGA: Recv ZSGSRD 36088
17-03-18 05:36:48.664 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.664 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.664 -07 000000611 INF: FPGA: Recv ZSGSRD 36089
17-03-18 05:36:48.674 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.674 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.674 -07 000000625 INF: FPGA: Recv ZSGSRD 36090
17-03-18 05:36:48.684 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.684 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.684 -07 000000512 INF: FPGA: Recv ZSGSRD 36088
17-03-18 05:36:48.694 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.694 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:48.694 -07 000000608 INF: FPGA: Recv ZSGSRD 36086
17-03-18 05:36:48.704 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.704 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:48.704 -07 000000611 INF: FPGA: Recv ZPIEZORD 32142
17-03-18 05:36:48.714 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:48.714 -07 000000618 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-18 05:36:48.714 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36087 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36080 (-171.2 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:36:48.714 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36087, posNoise = 5, negNoise = 7
17-03-18 05:36:48.714 -07 000000618 INF: Z Motor: After move to -0.172145, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:48.714 -07 000000618 INF: Z Motor: Settle wait time = 2223 ms, measure time = 103 ms (allowed 150 ms), total time = 2326 ms
17-03-18 05:36:48.714 -07 000000618 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:48.764 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2461 ms
17-03-18 05:36:48.764 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:48.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:48.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:48.764 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:48.764 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:48.764 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:48.764 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:48.774 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:48.774 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:48.774 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:48.774 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:48.784 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:36:48.784 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:36:48.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:48.834 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:49.134 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:49.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:49.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:49.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:36:49.174 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:49.174 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:49.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 05:36:49.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 05:36:49.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:49.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:49.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 05:36:49.274 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:49.274 -07 000000618 INF: Autofocus start
17-03-18 05:36:49.274 -07 000000618 INF: MeasureProfile start
17-03-18 05:36:49.274 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:49.284 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:49.284 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:49.284 -07 000000618 INF: MeasureProfile done
17-03-18 05:36:49.284 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 05:36:49.284 -07 000000618 INF: Autofocus finished
17-03-18 05:36:49.484 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:49.484 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:49.484 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172153895570863. ----------
17-03-18 05:36:49.484 -07 000000610 INF: Cycle	139	Tile	18	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:49.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36137, sync = True, waitForSettling = True)
17-03-18 05:36:49.494 -07 000000610 INF: Z Motor: Moving to -0.165425 mm, started at -0.172154 mm, distance = 6.73 um
17-03-18 05:36:49.494 -07 000000610 INF: FPGA: Xmit ZDACW 36137\n [Z Motor]
17-03-18 05:36:49.494 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:36:49.504 -07 000000610 INF: FPGA: 'ZDACW 36137' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:49.504 -07 000000561 INF: FPGA: Recv ZDACR 36137
17-03-18 05:36:49.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:49.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.664 -07 000000611 INF: FPGA: Recv ZSGSRD 35040
17-03-18 05:36:49.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.674 -07 000000608 INF: FPGA: Recv ZSGSRD 35045
17-03-18 05:36:49.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.694 -07 000000474 INF: FPGA: Recv ZSGSRD 35042
17-03-18 05:36:49.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:36:49.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.704 -07 000000608 INF: FPGA: Recv ZSGSRD 35045
17-03-18 05:36:49.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.714 -07 000000625 INF: FPGA: Recv ZSGSRD 35042
17-03-18 05:36:49.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.724 -07 000000626 INF: FPGA: Recv ZSGSRD 35040
17-03-18 05:36:49.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.734 -07 000000618 INF: FPGA: Recv ZSGSRD 35043
17-03-18 05:36:49.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.744 -07 000000512 INF: FPGA: Recv ZSGSRD 35042
17-03-18 05:36:49.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.754 -07 000000618 INF: FPGA: Recv ZSGSRD 35046
17-03-18 05:36:49.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:49.764 -07 000000474 INF: FPGA: Recv ZSGSRD 35039
17-03-18 05:36:49.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:49.774 -07 000000611 INF: FPGA: Recv ZPIEZORD 30754
17-03-18 05:36:49.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:49.784 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.514 V. Piezo Error = -9.4 V.
17-03-18 05:36:49.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35042 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35042 (-164.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35039 (-164.6 uncal um), Max = 35046 (-164.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:36:49.784 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35042, posNoise = 4, negNoise = 3
17-03-18 05:36:49.784 -07 000000610 INF: Z Motor: After move to -0.165425, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:49.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 05:36:49.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:49.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:49.784 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:49.784 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:49.784 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:49.784 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:49.784 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:49.784 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:49.784 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:36:49.784 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:49.784 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:49.784 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:49.794 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:36:49.794 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:49.794 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:36:49.794 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:49.804 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 05:36:49.804 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:36:49.804 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:36:49.804 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 05:36:49.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36314 150\n [Camera]
17-03-18 05:36:50.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:50.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 636
17-03-18 05:36:50.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 636
17-03-18 05:36:50.454 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:50.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 636
17-03-18 05:36:50.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 636
17-03-18 05:36:50.454 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:50.454 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:50.454 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:36:50.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:50.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:36:50.644 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36314 827
17-03-18 05:36:50.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-18 05:36:50.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 05:36:50.844 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 05:36:50.844 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:50.844 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:36:50.844 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:36:50.844 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:50.844 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:50.854 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:50.854 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:36:50.854 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:36:51.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:51.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:51.004 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:51.004 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:51.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:36:51.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:51.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:51.004 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:51.014 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:51.014 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-18 05:36:51.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:36:51.194 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:51.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36314 150' command took 2 ms to send, 1378 ms to get response, and 1390 ms overall
17-03-18 05:36:51.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 05:36:51.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165440593882722. ------
17-03-18 05:36:51.204 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:51.204 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17177 mm
17-03-18 05:36:51.204 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:51.204 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:36:51.204 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37523, sync = True, waitForSettling = False)
17-03-18 05:36:51.204 -07 000000626 INF: Z Motor: Moving to -0.171769 mm, started at -0.165441 mm, distance = -6.33 um
17-03-18 05:36:51.204 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 05:36:51.204 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:51.214 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:36:51.214 -07 000000626 INF: FPGA: Xmit ZDACW 37523\n [Z Motor]
17-03-18 05:36:51.214 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:36:51.224 -07 000000626 INF: FPGA: 'ZDACW 37523' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:36:51.224 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:51.224 -07 000000461 INF: FPGA: Recv YRDPOS 151566
17-03-18 05:36:51.234 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:36:51.234 -07 000000561 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:51.234 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:36:51.234 -07 000000561 INF: Y Motor: Moving 1353 steps-32
17-03-18 05:36:51.234 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:51.244 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:51.244 -07 000000618 INF: FPGA: Recv ZDACR 37523
17-03-18 05:36:51.254 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:36:51.254 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:51.254 -07 000000626 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:36:51.404 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:36:51.414 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:36:51.414 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:51.414 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:36:51.414 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:36:51.414 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:51.414 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:51.414 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:36:51.414 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:36:51.424 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:36:51.434 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:51.434 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:36:51.624 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:36:51.624 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:36:51.654 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:51.664 -07 000000611 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:36:51.664 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:36:51.664 -07 000000561 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:51.664 -07 000000561 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 05:36:51.664 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-18 05:36:51.784 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:52.614 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:52.614 -07 000000618 INF: FPGA: Recv YRDPOS 153253
17-03-18 05:36:52.624 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:52.624 -07 000000561 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:52.644 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:36:52.644 -07 000000561 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:36:52.644 -07 000000561 INF: Y Motor: Moved to 74.8306 after 1433 ms (table move)
17-03-18 05:36:52.644 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171769 mm (DAC = 37523)
17-03-18 05:36:52.644 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.654 -07 000000608 INF: FPGA: Recv ZSGSRD 36030
17-03-18 05:36:52.654 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:36:52.654 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.654 -07 000000611 INF: FPGA: Recv ZSGSRD 36028
17-03-18 05:36:52.664 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.664 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.664 -07 000000611 INF: FPGA: Recv ZSGSRD 36029
17-03-18 05:36:52.674 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.674 -07 000000611 INF: FPGA: Recv ZSGSRD 36027
17-03-18 05:36:52.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.684 -07 000000561 INF: FPGA: Recv ZSGSRD 36029
17-03-18 05:36:52.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.694 -07 000000618 INF: FPGA: Recv ZSGSRD 36034
17-03-18 05:36:52.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.704 -07 000000561 INF: FPGA: Recv ZSGSRD 36034
17-03-18 05:36:52.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.714 -07 000000561 INF: FPGA: Recv ZSGSRD 36032
17-03-18 05:36:52.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.724 -07 000000608 INF: FPGA: Recv ZSGSRD 36025
17-03-18 05:36:52.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:52.734 -07 000000611 INF: FPGA: Recv ZSGSRD 36024
17-03-18 05:36:52.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.744 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:52.744 -07 000000608 INF: FPGA: Recv ZPIEZORD 32073
17-03-18 05:36:52.754 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:52.754 -07 000000512 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.7 V.
17-03-18 05:36:52.754 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36029 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36029 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36024 (-170.9 uncal um), Max = 36034 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:36:52.754 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36029, posNoise = 5, negNoise = 5
17-03-18 05:36:52.754 -07 000000512 INF: Z Motor: After move to -0.171769, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:52.754 -07 000000512 INF: Z Motor: Settle wait time = 1436 ms, measure time = 106 ms (allowed 150 ms), total time = 1542 ms
17-03-18 05:36:52.754 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:36:52.804 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 05:36:52.804 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:36:52.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:52.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:52.804 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:52.814 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:36:52.814 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:52.814 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:52.814 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:52.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:36:52.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:52.814 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:36:52.824 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:36:52.824 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:36:52.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:36:52.874 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:36:53.124 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.985358,
17-03-18 05:36:53.174 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:36:53.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:36:53.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:36:53.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:36:53.214 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:36:53.214 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:36:53.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 373 ms to get response, and 386 ms overall
17-03-18 05:36:53.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:36:53.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:53.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:36:53.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:36:53.314 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:53.314 -07 000000561 INF: Autofocus start
17-03-18 05:36:53.314 -07 000000561 INF: MeasureProfile start
17-03-18 05:36:53.314 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:53.324 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:53.324 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:36:53.324 -07 000000561 INF: MeasureProfile done
17-03-18 05:36:53.324 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 05:36:53.324 -07 000000561 INF: Autofocus finished
17-03-18 05:36:53.524 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:36:53.524 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:36:53.524 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.17178129126664. ----------
17-03-18 05:36:53.524 -07 000000610 INF: Cycle	139	Tile	19	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:36:53.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36020, sync = True, waitForSettling = True)
17-03-18 05:36:53.534 -07 000000610 INF: Z Motor: Moving to -0.164889 mm, started at -0.171781 mm, distance = 6.89 um
17-03-18 05:36:53.534 -07 000000610 INF: FPGA: Xmit ZDACW 36020\n [Z Motor]
17-03-18 05:36:53.534 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:36:53.544 -07 000000610 INF: FPGA: 'ZDACW 36020' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:53.544 -07 000000585 INF: FPGA: Recv ZDACR 36020
17-03-18 05:36:53.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:36:53.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.704 -07 000000611 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:36:53.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:36:53.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.714 -07 000000581 INF: FPGA: Recv ZSGSRD 34961
17-03-18 05:36:53.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.724 -07 000000618 INF: FPGA: Recv ZSGSRD 34961
17-03-18 05:36:53.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.734 -07 000000581 INF: FPGA: Recv ZSGSRD 34952
17-03-18 05:36:53.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.744 -07 000000467 INF: FPGA: Recv ZSGSRD 34957
17-03-18 05:36:53.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.754 -07 000000608 INF: FPGA: Recv ZSGSRD 34960
17-03-18 05:36:53.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.764 -07 000000611 INF: FPGA: Recv ZSGSRD 34961
17-03-18 05:36:53.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.774 -07 000000581 INF: FPGA: Recv ZSGSRD 34952
17-03-18 05:36:53.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.784 -07 000000467 INF: FPGA: Recv ZSGSRD 34959
17-03-18 05:36:53.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:36:53.794 -07 000000581 INF: FPGA: Recv ZSGSRD 34960
17-03-18 05:36:53.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:36:53.804 -07 000000467 INF: FPGA: Recv ZPIEZORD 30626
17-03-18 05:36:53.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:36:53.814 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.496 V. Piezo Error = -9.5 V.
17-03-18 05:36:53.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34958 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34960 (-164.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34952 (-164.0 uncal um), Max = 34961 (-164.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:36:53.814 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34958, posNoise = 3, negNoise = 6
17-03-18 05:36:53.814 -07 000000610 INF: Z Motor: After move to -0.164889, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:36:53.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:36:53.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:36:53.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:36:53.814 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:36:53.814 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:36:53.814 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:36:53.814 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:36:53.814 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:36:53.814 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:36:53.814 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:36:53.814 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:36:53.814 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:36:53.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:36:53.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:36:53.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:36:53.814 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:36:53.824 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:36:53.834 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:36:53.834 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:36:53.834 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 05:36:53.834 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:36:53.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36197 150\n [Camera]
17-03-18 05:36:54.034 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:36:54.474 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:36:54.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:36:54.484 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:54.484 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:54.484 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 05:36:54.484 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:36:54.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:36:54.484 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:54.484 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:54.484 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 05:36:54.674 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36197 827
17-03-18 05:36:54.824 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:36:54.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:36:54.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:36:54.884 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:54.884 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:54.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:36:54.884 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:36:54.884 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:36:54.884 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:54.884 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:54.894 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:36:55.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:36:55.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:36:55.034 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:36:55.034 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:36:55.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 05:36:55.034 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:36:55.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:36:55.034 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:36:55.034 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:36:55.034 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:36:55.224 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:36:55.224 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:36:55.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36197 150' command took 2 ms to send, 1377 ms to get response, and 1390 ms overall
17-03-18 05:36:55.424 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 05:36:55.424 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 05:36:55.424 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:55.434 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:36:55.434 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:36:55.434 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:36:55.434 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:36:55.434 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:36:55.444 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:36:55.444 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 05:36:55.444 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:36:55.484 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 05:36:55.484 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:36:55.534 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 05:36:55.534 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 05:36:55.534 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 05:36:55.534 -07 000000592 INF: FPGA: Recv EMCUR 
17-03-18 05:36:55.544 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:36:55.544 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 05:36:56.044 -07 000000585 INF: FPGA: Recv EMIN
17-03-18 05:36:56.044 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 05:36:56.044 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 05:36:56.044 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 05:36:56.054 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:36:56.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:36:56.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164900960062814. ------
17-03-18 05:36:56.054 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13937 mm
17-03-18 05:36:56.054 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:36:56.054 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:36:56.064 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30444, sync = True, waitForSettling = False)
17-03-18 05:36:56.064 -07 000000581 INF: Z Motor: Moving to -0.139364 mm, started at -0.164901 mm, distance = 25.54 um
17-03-18 05:36:56.064 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 05:36:56.064 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 05:36:56.064 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:36:56.064 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:36:56.064 -07 000000581 INF: FPGA: Xmit ZDACW 30444\n [Z Motor]
17-03-18 05:36:56.064 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:36:56.074 -07 000000581 INF: FPGA: 'ZDACW 30444' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:36:56.074 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:36:56.084 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:36:56.084 -07 000000611 INF: FPGA: Recv YRDPOS 153255
17-03-18 05:36:56.094 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 05:36:56.094 -07 000000512 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:36:56.094 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:36:56.094 -07 000000611 INF: FPGA: Recv ZDACR 30444
17-03-18 05:36:56.094 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 05:36:56.094 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 05:36:56.104 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:36:56.104 -07 000000581 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:36:56.104 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 05:36:56.274 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:36:56.274 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 05:36:56.784 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:36:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:36:57.724 -07 000000585 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 05:36:57.724 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1629 ms overall
17-03-18 05:36:57.724 -07 000000512 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 05:36:57.724 -07 000000512 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 05:36:57.724 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1629 ms, distance = 14.918 mm, average velocity = 9.158 mm/sec
17-03-18 05:36:58.484 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.99219,
17-03-18 05:37:00.574 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:00.574 -07 000000592 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:37:00.584 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:00.584 -07 000000512 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:00.624 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:00.624 -07 000000512 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 05:37:00.624 -07 000000512 INF: Y Motor: Moved to 59.9102 after 4559 ms
17-03-18 05:37:00.624 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139364 mm (DAC = 30444)
17-03-18 05:37:00.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.624 -07 000000512 INF: FPGA: Recv ZSGSRD 30988
17-03-18 05:37:00.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:00.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.634 -07 000000512 INF: FPGA: Recv ZSGSRD 30982
17-03-18 05:37:00.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.644 -07 000000512 INF: FPGA: Recv ZSGSRD 30982
17-03-18 05:37:00.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.654 -07 000000592 INF: FPGA: Recv ZSGSRD 30986
17-03-18 05:37:00.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.664 -07 000000618 INF: FPGA: Recv ZSGSRD 30985
17-03-18 05:37:00.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.674 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.674 -07 000000608 INF: FPGA: Recv ZSGSRD 30986
17-03-18 05:37:00.684 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.684 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.684 -07 000000512 INF: FPGA: Recv ZSGSRD 30987
17-03-18 05:37:00.694 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.694 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.694 -07 000000608 INF: FPGA: Recv ZSGSRD 30984
17-03-18 05:37:00.704 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.704 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.704 -07 000000512 INF: FPGA: Recv ZSGSRD 30989
17-03-18 05:37:00.714 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:00.724 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:00.724 -07 000000512 INF: FPGA: Recv ZSGSRD 30983
17-03-18 05:37:00.734 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:37:00.734 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:00.734 -07 000000592 INF: FPGA: Recv ZPIEZORD 26430
17-03-18 05:37:00.744 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:00.744 -07 000000467 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.645 V. Piezo Error = -10.0 V.
17-03-18 05:37:00.744 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30985 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30986 (-138.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30982 (-138.6 uncal um), Max = 30989 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 05:37:00.744 -07 000000467 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30985, posNoise = 4, negNoise = 3
17-03-18 05:37:00.744 -07 000000467 INF: Z Motor: After move to -0.139364, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:00.744 -07 000000467 INF: Z Motor: Settle wait time = 4564 ms, measure time = 115 ms (allowed 150 ms), total time = 4679 ms
17-03-18 05:37:00.744 -07 000000467 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:00.784 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4721 ms
17-03-18 05:37:00.784 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:00.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:00.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:00.784 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:00.784 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:00.784 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:00.784 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:00.784 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:00.784 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 05:37:00.814 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 05:37:00.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:00.814 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:00.814 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:00.824 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:00.824 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-18 05:37:00.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:00.864 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:01.164 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:01.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:01.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:01.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:01.204 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:01.204 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:01.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:37:01.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:37:01.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:01.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:01.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:37:01.304 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:01.304 -07 000000608 INF: Image SNR check: start
17-03-18 05:37:01.304 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:01.314 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:01.314 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:01.324 -07 000000608 INF: Image SNR check: pass  [peak (Max-Min)=125.43]
17-03-18 05:37:01.324 -07 000000608 INF: Autofocus start
17-03-18 05:37:01.324 -07 000000608 INF: MeasureProfile start
17-03-18 05:37:01.334 -07 000000608 INF: MeasureProfile done
17-03-18 05:37:01.334 -07 000000608 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:37:01.334 -07 000000608 INF: Autofocus finished
17-03-18 05:37:01.514 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:01.514 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:01.514 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139377565223598. ----------
17-03-18 05:37:01.524 -07 000000610 INF: Cycle	139	Tile	1	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:01.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28939, sync = True, waitForSettling = True)
17-03-18 05:37:01.524 -07 000000610 INF: Z Motor: Moving to -0.132474 mm, started at -0.139378 mm, distance = 6.90 um
17-03-18 05:37:01.524 -07 000000610 INF: FPGA: Xmit ZDACW 28939\n [Z Motor]
17-03-18 05:37:01.524 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:37:01.534 -07 000000610 INF: FPGA: 'ZDACW 28939' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:01.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:01.534 -07 000000467 INF: FPGA: Recv ZDACR 28939
17-03-18 05:37:01.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:01.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.694 -07 000000474 INF: FPGA: Recv ZSGSRD 29908
17-03-18 05:37:01.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:01.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.704 -07 000000467 INF: FPGA: Recv ZSGSRD 29911
17-03-18 05:37:01.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.714 -07 000000474 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:37:01.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.724 -07 000000618 INF: FPGA: Recv ZSGSRD 29908
17-03-18 05:37:01.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.734 -07 000000474 INF: FPGA: Recv ZSGSRD 29903
17-03-18 05:37:01.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.744 -07 000000592 INF: FPGA: Recv ZSGSRD 29916
17-03-18 05:37:01.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.754 -07 000000474 INF: FPGA: Recv ZSGSRD 29912
17-03-18 05:37:01.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.764 -07 000000467 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:37:01.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.774 -07 000000608 INF: FPGA: Recv ZSGSRD 29915
17-03-18 05:37:01.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:01.784 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:01.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:01.784 -07 000000618 INF: FPGA: Recv ZSGSRD 29910
17-03-18 05:37:01.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:01.794 -07 000000474 INF: FPGA: Recv ZPIEZORD 25312
17-03-18 05:37:01.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:01.804 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.1 V.
17-03-18 05:37:01.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29910 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29910 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29903 (-131.6 uncal um), Max = 29916 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:37:01.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29910, posNoise = 6, negNoise = 7
17-03-18 05:37:01.804 -07 000000610 INF: Z Motor: After move to -0.132474, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:01.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:37:01.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:01.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:01.804 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:01.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:01.804 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:01.804 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:01.804 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:01.804 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:01.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:01.804 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:01.804 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:01.804 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 05:37:01.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:01.804 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:01.814 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:37:01.814 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:37:01.824 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 05:37:01.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:01.834 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:37:01.834 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:01.834 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:37:01.834 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 05:37:01.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29116 150\n [Camera]
17-03-18 05:37:02.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:02.484 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:02.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:02.484 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:02.484 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:02.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:02.494 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:02.494 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:37:02.494 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:02.494 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:02.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:37:02.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29116 827
17-03-18 05:37:02.824 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:02.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 05:37:02.874 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 05:37:02.874 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:02.874 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 05:37:02.874 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 05:37:02.874 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:02.874 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:02.874 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:37:02.874 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:02.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:37:03.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:03.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:03.034 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:03.044 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:03.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:03.044 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:03.054 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:03.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:37:03.054 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:03.054 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:37:03.234 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:03.234 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:03.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29116 150' command took 2 ms to send, 1381 ms to get response, and 1390 ms overall
17-03-18 05:37:03.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:03.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132471537171205. ------
17-03-18 05:37:03.234 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:03.234 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13884 mm
17-03-18 05:37:03.234 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:03.364 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:03.364 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 05:37:03.364 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:03.364 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30329, sync = True, waitForSettling = False)
17-03-18 05:37:03.364 -07 000000480 INF: Z Motor: Moving to -0.138837 mm, started at -0.132472 mm, distance = -6.37 um
17-03-18 05:37:03.364 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 05:37:03.364 -07 000000585 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 05:37:03.374 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:03.374 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 05:37:03.384 -07 000000480 INF: FPGA: Xmit ZDACW 30329\n [Z Motor]
17-03-18 05:37:03.384 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:37:03.384 -07 000000585 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:03.384 -07 000000585 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:03.384 -07 000000585 INF: Y Motor: Moving 1332 steps1
17-03-18 05:37:03.384 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:37:03.394 -07 000000480 INF: FPGA: 'ZDACW 30329' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:37:03.394 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:03.394 -07 000000625 INF: FPGA: Recv ZDACR 30329
17-03-18 05:37:03.404 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:03.404 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:03.404 -07 000000480 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 05:37:03.444 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:37:03.444 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:37:03.444 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:03.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:37:03.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:37:03.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:03.454 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:03.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:03.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 05:37:03.454 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 05:37:03.564 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:03.564 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 05:37:03.774 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 05:37:03.774 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:37:03.814 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:03.824 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:37:03.824 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:03.824 -07 000000585 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:03.824 -07 000000585 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 05:37:03.824 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 05:37:03.844 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.012614,
17-03-18 05:37:04.774 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:04.774 -07 000000611 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:37:04.784 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:04.784 -07 000000585 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:04.814 -07 000000585 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:04.814 -07 000000585 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:04.814 -07 000000585 INF: Y Motor: Moved to 60.7324 after 1444 ms (table move)
17-03-18 05:37:04.814 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138837 mm (DAC = 30329)
17-03-18 05:37:04.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.824 -07 000000592 INF: FPGA: Recv ZSGSRD 30896
17-03-18 05:37:04.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 05:37:04.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.824 -07 000000625 INF: FPGA: Recv ZSGSRD 30894
17-03-18 05:37:04.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:04.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.834 -07 000000611 INF: FPGA: Recv ZSGSRD 30902
17-03-18 05:37:04.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.844 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.844 -07 000000512 INF: FPGA: Recv ZSGSRD 30903
17-03-18 05:37:04.854 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.854 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.854 -07 000000592 INF: FPGA: Recv ZSGSRD 30894
17-03-18 05:37:04.864 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.864 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.864 -07 000000512 INF: FPGA: Recv ZSGSRD 30902
17-03-18 05:37:04.874 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.874 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.874 -07 000000585 INF: FPGA: Recv ZSGSRD 30901
17-03-18 05:37:04.884 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.884 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.884 -07 000000585 INF: FPGA: Recv ZSGSRD 30900
17-03-18 05:37:04.894 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.894 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.894 -07 000000479 INF: FPGA: Recv ZSGSRD 30892
17-03-18 05:37:04.904 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.904 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:04.904 -07 000000480 INF: FPGA: Recv ZSGSRD 30906
17-03-18 05:37:04.914 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.914 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:04.914 -07 000000479 INF: FPGA: Recv ZPIEZORD 26655
17-03-18 05:37:04.924 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:04.924 -07 000000626 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.3 V.
17-03-18 05:37:04.924 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30899 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30900 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30892 (-138.0 uncal um), Max = 30906 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:37:04.924 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30899, posNoise = 7, negNoise = 7
17-03-18 05:37:04.924 -07 000000626 INF: Z Motor: After move to -0.138837, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:04.924 -07 000000626 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-18 05:37:04.924 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:04.974 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-18 05:37:04.974 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:04.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:04.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:04.974 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:04.974 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:04.974 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:04.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:04.974 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:04.974 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:04.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:04.984 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:04.994 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 05:37:04.994 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 05:37:04.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:05.044 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:05.344 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:05.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:05.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:05.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:05.384 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:05.384 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:05.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 05:37:05.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:37:05.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:05.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:05.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:37:05.484 -07 000000625 INF: Autofocus start
17-03-18 05:37:05.484 -07 000000625 INF: MeasureProfile start
17-03-18 05:37:05.484 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:05.484 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:05.494 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:05.494 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:05.494 -07 000000625 INF: MeasureProfile done
17-03-18 05:37:05.494 -07 000000625 INF: X=32  Z correction [um]=0.1299841
17-03-18 05:37:05.494 -07 000000625 INF: Autofocus finished
17-03-18 05:37:05.694 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:05.694 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 05:37:05.694 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138825082979407. ----------
17-03-18 05:37:05.704 -07 000000610 INF: Cycle	139	Tile	2	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:05.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28870, sync = True, waitForSettling = True)
17-03-18 05:37:05.704 -07 000000610 INF: Z Motor: Moving to -0.132158 mm, started at -0.138825 mm, distance = 6.67 um
17-03-18 05:37:05.704 -07 000000610 INF: FPGA: Xmit ZDACW 28870\n [Z Motor]
17-03-18 05:37:05.704 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:37:05.714 -07 000000610 INF: FPGA: 'ZDACW 28870' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:37:05.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:05.714 -07 000000479 INF: FPGA: Recv ZDACR 28870
17-03-18 05:37:05.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:05.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.874 -07 000000625 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:37:05.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:05.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.884 -07 000000626 INF: FPGA: Recv ZSGSRD 29859
17-03-18 05:37:05.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.894 -07 000000479 INF: FPGA: Recv ZSGSRD 29853
17-03-18 05:37:05.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.904 -07 000000479 INF: FPGA: Recv ZSGSRD 29863
17-03-18 05:37:05.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.914 -07 000000625 INF: FPGA: Recv ZSGSRD 29865
17-03-18 05:37:05.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.924 -07 000000479 INF: FPGA: Recv ZSGSRD 29864
17-03-18 05:37:05.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.934 -07 000000625 INF: FPGA: Recv ZSGSRD 29862
17-03-18 05:37:05.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29866
17-03-18 05:37:05.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.954 -07 000000479 INF: FPGA: Recv ZSGSRD 29861
17-03-18 05:37:05.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:05.964 -07 000000626 INF: FPGA: Recv ZSGSRD 29858
17-03-18 05:37:05.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:05.974 -07 000000626 INF: FPGA: Recv ZPIEZORD 25302
17-03-18 05:37:05.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:05.984 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -10.0 V.
17-03-18 05:37:05.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29861 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29862 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29853 (-131.3 uncal um), Max = 29866 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:37:05.984 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29861, posNoise = 5, negNoise = 8
17-03-18 05:37:05.984 -07 000000610 INF: Z Motor: After move to -0.132158, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:05.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 05:37:05.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:05.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:05.984 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:05.984 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:05.984 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:05.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:05.984 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:05.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:05.984 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:05.984 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:05.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:05.984 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:05.994 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:05.994 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:05.994 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:37:05.994 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:06.004 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:37:06.004 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:37:06.004 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:37:06.004 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:37:06.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29046 150\n [Camera]
17-03-18 05:37:06.214 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:06.654 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-18 05:37:06.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-18 05:37:06.654 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:06.654 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-18 05:37:06.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-18 05:37:06.664 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:06.664 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:06.664 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:37:06.664 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:06.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:37:06.784 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:06.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:06.844 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29046 827
17-03-18 05:37:06.994 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 979
17-03-18 05:37:07.054 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:37:07.054 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:37:07.054 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:07.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:37:07.054 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:37:07.054 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:07.064 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:37:07.064 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:37:07.064 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:37:07.074 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:37:07.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:07.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:07.214 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:07.214 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:07.214 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:37:07.214 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:07.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:07.214 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:07.214 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:07.214 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 05:37:07.404 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:07.404 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:07.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29046 150' command took 2 ms to send, 1381 ms to get response, and 1389 ms overall
17-03-18 05:37:07.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:07.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132156750776259. ------
17-03-18 05:37:07.404 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:07.404 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13906 mm
17-03-18 05:37:07.404 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:07.404 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 05:37:07.404 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 05:37:07.414 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:07.414 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:37:07.414 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:07.414 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30379, sync = True, waitForSettling = False)
17-03-18 05:37:07.414 -07 000000479 INF: Z Motor: Moving to -0.139066 mm, started at -0.132157 mm, distance = -6.91 um
17-03-18 05:37:07.414 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 05:37:07.424 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:07.424 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:07.424 -07 000000479 INF: FPGA: Xmit ZDACW 30379\n [Z Motor]
17-03-18 05:37:07.424 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:07.424 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-18 05:37:07.424 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:37:07.434 -07 000000479 INF: FPGA: 'ZDACW 30379' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:37:07.434 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:07.444 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:07.454 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:07.454 -07 000000461 INF: FPGA: Recv ZDACR 30379
17-03-18 05:37:07.464 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:07.464 -07 000000479 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 05:37:07.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:37:07.604 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:37:07.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:07.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:37:07.604 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:37:07.604 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:07.604 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:07.614 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:37:07.614 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:37:07.614 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:37:07.634 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:07.634 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:37:07.814 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:37:07.814 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:37:07.864 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:07.874 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:37:07.874 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:37:07.874 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:07.874 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:37:07.874 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 05:37:08.824 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:08.824 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:37:08.834 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.834 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:08.864 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:08.864 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:08.864 -07 000000626 INF: Y Motor: Moved to 61.5630 after 1452 ms (table move)
17-03-18 05:37:08.864 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139066 mm (DAC = 30379)
17-03-18 05:37:08.864 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.864 -07 000000474 INF: FPGA: Recv ZSGSRD 30938
17-03-18 05:37:08.874 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:08.874 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.874 -07 000000512 INF: FPGA: Recv ZSGSRD 30939
17-03-18 05:37:08.884 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.894 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.894 -07 000000467 INF: FPGA: Recv ZSGSRD 30943
17-03-18 05:37:08.904 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:37:08.904 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.904 -07 000000618 INF: FPGA: Recv ZSGSRD 30935
17-03-18 05:37:08.914 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.914 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.914 -07 000000467 INF: FPGA: Recv ZSGSRD 30932
17-03-18 05:37:08.924 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.924 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.924 -07 000000479 INF: FPGA: Recv ZSGSRD 30939
17-03-18 05:37:08.934 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:08.934 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.934 -07 000000611 INF: FPGA: Recv ZSGSRD 30941
17-03-18 05:37:08.944 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.944 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.944 -07 000000480 INF: FPGA: Recv ZSGSRD 30941
17-03-18 05:37:08.954 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.954 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.954 -07 000000625 INF: FPGA: Recv ZSGSRD 30928
17-03-18 05:37:08.964 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.964 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:08.964 -07 000000618 INF: FPGA: Recv ZSGSRD 30938
17-03-18 05:37:08.974 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.974 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:08.974 -07 000000461 INF: FPGA: Recv ZPIEZORD 26745
17-03-18 05:37:08.984 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:08.984 -07 000000581 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.2 V.
17-03-18 05:37:08.984 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30937 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30938 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30928 (-138.2 uncal um), Max = 30943 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:37:08.984 -07 000000581 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30937, posNoise = 6, negNoise = 9
17-03-18 05:37:08.984 -07 000000581 INF: Z Motor: After move to -0.139066, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:08.984 -07 000000581 INF: Z Motor: Settle wait time = 1452 ms, measure time = 115 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:37:08.984 -07 000000581 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:09.024 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:37:09.024 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:09.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:09.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:09.024 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:09.024 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:09.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:09.024 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:09.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:09.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:09.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:09.034 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:09.034 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:37:09.034 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:37:09.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:09.084 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:09.204 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.019446,
17-03-18 05:37:09.384 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:09.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:09.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:09.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:37:09.424 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:09.424 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:09.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:37:09.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 05:37:09.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:09.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:09.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:37:09.524 -07 000000461 INF: Autofocus start
17-03-18 05:37:09.524 -07 000000461 INF: MeasureProfile start
17-03-18 05:37:09.524 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:09.524 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:09.534 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:09.534 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:09.534 -07 000000461 INF: MeasureProfile done
17-03-18 05:37:09.534 -07 000000461 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 05:37:09.534 -07 000000461 INF: Autofocus finished
17-03-18 05:37:09.734 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:09.734 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:09.734 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.139069203040794. ----------
17-03-18 05:37:09.734 -07 000000610 INF: Cycle	139	Tile	3	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:09.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28856, sync = True, waitForSettling = True)
17-03-18 05:37:09.744 -07 000000610 INF: Z Motor: Moving to -0.132094 mm, started at -0.139069 mm, distance = 6.97 um
17-03-18 05:37:09.744 -07 000000610 INF: FPGA: Xmit ZDACW 28856\n [Z Motor]
17-03-18 05:37:09.744 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:37:09.754 -07 000000610 INF: FPGA: 'ZDACW 28856' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:09.754 -07 000000608 INF: FPGA: Recv ZDACR 28856
17-03-18 05:37:09.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:09.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.914 -07 000000611 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:37:09.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:09.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.924 -07 000000611 INF: FPGA: Recv ZSGSRD 29852
17-03-18 05:37:09.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29840
17-03-18 05:37:09.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.944 -07 000000611 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:37:09.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.954 -07 000000611 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:37:09.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.964 -07 000000581 INF: FPGA: Recv ZSGSRD 29858
17-03-18 05:37:09.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.974 -07 000000561 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:37:09.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.984 -07 000000581 INF: FPGA: Recv ZSGSRD 29850
17-03-18 05:37:09.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:09.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:09.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29854
17-03-18 05:37:10.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:10.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:10.004 -07 000000608 INF: FPGA: Recv ZSGSRD 29851
17-03-18 05:37:10.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:10.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:10.014 -07 000000611 INF: FPGA: Recv ZPIEZORD 25311
17-03-18 05:37:10.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:10.024 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.0 V.
17-03-18 05:37:10.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29852 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29840 (-131.2 uncal um), Max = 29858 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 05:37:10.024 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29852, posNoise = 6, negNoise = 12
17-03-18 05:37:10.024 -07 000000610 INF: Z Motor: After move to -0.132094, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:10.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 05:37:10.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:10.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:10.024 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:10.024 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:10.024 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:10.024 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:10.024 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:10.024 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:10.024 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:10.024 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:10.024 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:10.024 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:10.034 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:10.034 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:10.034 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:37:10.034 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:10.034 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:37:10.034 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:37:10.044 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:37:10.044 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:37:10.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29033 150\n [Camera]
17-03-18 05:37:10.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:10.684 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:10.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:10.684 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:10.684 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:10.684 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:37:10.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:10.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:10.684 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:10.684 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:10.684 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:37:10.874 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29033 827
17-03-18 05:37:11.024 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:11.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:37:11.084 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:37:11.084 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:11.084 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 05:37:11.084 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:37:11.084 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:11.084 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:11.084 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:37:11.084 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:11.094 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 05:37:11.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:11.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:11.244 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:11.244 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:11.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:37:11.244 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:11.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:11.244 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:11.244 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:11.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:37:11.434 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:11.434 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:11.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29033 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-18 05:37:11.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:11.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132098932866983. ------
17-03-18 05:37:11.564 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13855 mm
17-03-18 05:37:11.564 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:11.574 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:11.574 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 05:37:11.574 -07 000000581 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 05:37:11.574 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30267, sync = True, waitForSettling = False)
17-03-18 05:37:11.574 -07 000000625 INF: Z Motor: Moving to -0.138553 mm, started at -0.132099 mm, distance = -6.45 um
17-03-18 05:37:11.574 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:11.584 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:11.584 -07 000000625 INF: FPGA: Xmit ZDACW 30267\n [Z Motor]
17-03-18 05:37:11.584 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:37:11.594 -07 000000625 INF: FPGA: 'ZDACW 30267' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:37:11.604 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:11.604 -07 000000626 INF: FPGA: Recv YRDPOS 126081
17-03-18 05:37:11.614 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:11.614 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 05:37:11.614 -07 000000581 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:11.614 -07 000000581 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:11.614 -07 000000581 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:37:11.624 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:11.624 -07 000000479 INF: FPGA: Recv ZDACR 30267
17-03-18 05:37:11.634 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:37:11.634 -07 000000625 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 05:37:11.644 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:11.644 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:37:11.644 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:37:11.644 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:11.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 05:37:11.644 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:37:11.644 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:11.654 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 05:37:11.654 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:11.654 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:37:11.654 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:37:11.784 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:11.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:11.814 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:11.814 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 05:37:12.014 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:37:12.014 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:37:12.064 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:12.074 -07 000000382 INF: FPGA: Recv YRDPOS 127784
17-03-18 05:37:12.074 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:12.074 -07 000000581 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:12.074 -07 000000581 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 05:37:12.074 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.840 mm, average velocity = 2.063 mm/sec
17-03-18 05:37:13.024 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:13.024 -07 000000382 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:37:13.034 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:13.034 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:13.064 -07 000000581 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:13.064 -07 000000581 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:37:13.064 -07 000000581 INF: Y Motor: Moved to 62.3950 after 1488 ms (table move)
17-03-18 05:37:13.064 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138553 mm (DAC = 30267)
17-03-18 05:37:13.064 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.064 -07 000000592 INF: FPGA: Recv ZSGSRD 30858
17-03-18 05:37:13.074 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:37:13.074 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.074 -07 000000625 INF: FPGA: Recv ZSGSRD 30857
17-03-18 05:37:13.084 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.084 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.084 -07 000000585 INF: FPGA: Recv ZSGSRD 30851
17-03-18 05:37:13.094 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.094 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.094 -07 000000474 INF: FPGA: Recv ZSGSRD 30854
17-03-18 05:37:13.104 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.104 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.104 -07 000000447 INF: FPGA: Recv ZSGSRD 30855
17-03-18 05:37:13.114 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.114 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.114 -07 000000467 INF: FPGA: Recv ZSGSRD 30859
17-03-18 05:37:13.124 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.124 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.124 -07 000000625 INF: FPGA: Recv ZSGSRD 30857
17-03-18 05:37:13.134 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.134 -07 000000611 INF: FPGA: Recv ZSGSRD 30866
17-03-18 05:37:13.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.144 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.144 -07 000000474 INF: FPGA: Recv ZSGSRD 30861
17-03-18 05:37:13.154 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:13.154 -07 000000501 INF: FPGA: Recv ZSGSRD 30855
17-03-18 05:37:13.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.164 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:13.164 -07 000000467 INF: FPGA: Recv ZPIEZORD 26701
17-03-18 05:37:13.174 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.174 -07 000000608 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.1 V.
17-03-18 05:37:13.174 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30857 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30857 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30851 (-137.7 uncal um), Max = 30866 (-137.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:37:13.174 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30857, posNoise = 9, negNoise = 6
17-03-18 05:37:13.174 -07 000000608 INF: Z Motor: After move to -0.138553, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:13.174 -07 000000608 INF: Z Motor: Settle wait time = 1491 ms, measure time = 107 ms (allowed 150 ms), total time = 1598 ms
17-03-18 05:37:13.174 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:13.224 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1650 ms
17-03-18 05:37:13.224 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:13.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:13.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:13.224 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:13.224 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:13.224 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:13.224 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:13.224 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:13.224 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:13.234 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:13.234 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:13.234 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:13.234 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:37:13.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:13.284 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:13.584 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:13.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:13.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:13.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:13.624 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:13.624 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:13.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:37:13.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:37:13.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:13.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:37:13.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:37:13.724 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:13.724 -07 000000625 INF: Autofocus start
17-03-18 05:37:13.724 -07 000000625 INF: MeasureProfile start
17-03-18 05:37:13.724 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:13.734 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:13.734 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:13.744 -07 000000625 INF: MeasureProfile done
17-03-18 05:37:13.744 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:37:13.744 -07 000000625 INF: Autofocus finished
17-03-18 05:37:13.934 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:13.934 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:13.934 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138555266069453. ----------
17-03-18 05:37:13.934 -07 000000610 INF: Cycle	139	Tile	4	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:13.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28791, sync = True, waitForSettling = True)
17-03-18 05:37:13.944 -07 000000610 INF: Z Motor: Moving to -0.131797 mm, started at -0.138555 mm, distance = 6.76 um
17-03-18 05:37:13.944 -07 000000610 INF: FPGA: Xmit ZDACW 28791\n [Z Motor]
17-03-18 05:37:13.944 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 05:37:13.954 -07 000000610 INF: FPGA: 'ZDACW 28791' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:13.954 -07 000000581 INF: FPGA: Recv ZDACR 28791
17-03-18 05:37:13.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:13.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:14.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.114 -07 000000618 INF: FPGA: Recv ZSGSRD 29810
17-03-18 05:37:14.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29811
17-03-18 05:37:14.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.134 -07 000000608 INF: FPGA: Recv ZSGSRD 29798
17-03-18 05:37:14.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.144 -07 000000382 INF: FPGA: Recv ZSGSRD 29800
17-03-18 05:37:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.154 -07 000000474 INF: FPGA: Recv ZSGSRD 29806
17-03-18 05:37:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.164 -07 000000479 INF: FPGA: Recv ZSGSRD 29809
17-03-18 05:37:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.174 -07 000000626 INF: FPGA: Recv ZSGSRD 29798
17-03-18 05:37:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.184 -07 000000611 INF: FPGA: Recv ZSGSRD 29803
17-03-18 05:37:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.194 -07 000000561 INF: FPGA: Recv ZSGSRD 29805
17-03-18 05:37:14.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:14.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29809
17-03-18 05:37:14.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:14.214 -07 000000461 INF: FPGA: Recv ZPIEZORD 25300
17-03-18 05:37:14.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:14.224 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.9 V.
17-03-18 05:37:14.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29805 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29798 (-131.0 uncal um), Max = 29811 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:37:14.224 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29805, posNoise = 6, negNoise = 7
17-03-18 05:37:14.224 -07 000000610 INF: Z Motor: After move to -0.131797, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:14.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:37:14.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:14.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:14.224 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:14.224 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:14.224 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:14.224 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:14.224 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:14.224 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:14.224 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:37:14.224 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:14.224 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:37:14.224 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:14.234 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 05:37:14.234 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:14.234 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:14.234 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:14.244 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:37:14.244 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 05:37:14.244 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:37:14.244 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:37:14.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28968 150\n [Camera]
17-03-18 05:37:14.454 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:14.564 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.008536,
17-03-18 05:37:14.894 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:14.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:14.894 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:14.894 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:14.894 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:37:14.894 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:14.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:14.904 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:14.924 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:14.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:37:15.084 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28968 827
17-03-18 05:37:15.234 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:15.294 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 05:37:15.294 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:37:15.294 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:15.294 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:15.294 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:37:15.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 05:37:15.304 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:37:15.304 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:15.304 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 05:37:15.314 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:37:15.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:15.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:15.454 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:15.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:15.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:15.454 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:15.464 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:15.464 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:37:15.464 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:15.464 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:37:15.644 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:37:15.644 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:15.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28968 150' command took 2 ms to send, 1380 ms to get response, and 1396 ms overall
17-03-18 05:37:15.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:15.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.13179699489632. ------
17-03-18 05:37:15.644 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:15.644 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13849 mm
17-03-18 05:37:15.644 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:15.644 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 05:37:15.644 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 05:37:15.654 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:15.864 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 05:37:15.864 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:37:15.864 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:15.864 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:37:15.864 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:37:15.864 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:15.874 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:15.874 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:15.874 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-18 05:37:15.994 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 543 ms.
17-03-18 05:37:16.004 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30253, sync = True, waitForSettling = False)
17-03-18 05:37:16.004 -07 000000474 INF: Z Motor: Moving to -0.138489 mm, started at -0.131797 mm, distance = -6.69 um
17-03-18 05:37:16.004 -07 000000474 INF: FPGA: Xmit ZDACW 30253\n [Z Motor]
17-03-18 05:37:16.004 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:16.004 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 05:37:16.004 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:37:16.004 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 356 ms to get response, and 360 ms overall
17-03-18 05:37:16.004 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 346 ms to get response, and 358 ms overall
17-03-18 05:37:16.004 -07 000000581 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:16.004 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:16.004 -07 000000581 INF: Y Motor: Moving 1340 steps-17
17-03-18 05:37:16.014 -07 000000474 INF: FPGA: 'ZDACW 30253' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:16.014 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:16.024 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:16.034 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:16.034 -07 000000461 INF: FPGA: Recv ZDACR 30253
17-03-18 05:37:16.044 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:16.044 -07 000000474 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 05:37:16.224 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:16.224 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 05:37:16.384 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:37:16.384 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 05:37:16.434 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:16.444 -07 000000461 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:37:16.444 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:16.444 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:16.444 -07 000000581 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:37:16.444 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.838 mm, average velocity = 2.198 mm/sec
17-03-18 05:37:16.784 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:16.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:17.394 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:17.394 -07 000000618 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:37:17.404 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:17.404 -07 000000581 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:17.434 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:17.434 -07 000000581 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:17.434 -07 000000581 INF: Y Motor: Moved to 63.2231 after 1785 ms (table move)
17-03-18 05:37:17.434 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138489 mm (DAC = 30253)
17-03-18 05:37:17.434 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.444 -07 000000618 INF: FPGA: Recv ZSGSRD 30844
17-03-18 05:37:17.444 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 05:37:17.444 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.444 -07 000000581 INF: FPGA: Recv ZSGSRD 30850
17-03-18 05:37:17.454 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.454 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.454 -07 000000474 INF: FPGA: Recv ZSGSRD 30851
17-03-18 05:37:17.464 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.464 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.464 -07 000000561 INF: FPGA: Recv ZSGSRD 30849
17-03-18 05:37:17.474 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.474 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.474 -07 000000447 INF: FPGA: Recv ZSGSRD 30846
17-03-18 05:37:17.484 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.484 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.484 -07 000000581 INF: FPGA: Recv ZSGSRD 30842
17-03-18 05:37:17.494 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.494 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.494 -07 000000474 INF: FPGA: Recv ZSGSRD 30839
17-03-18 05:37:17.504 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:17.504 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.504 -07 000000447 INF: FPGA: Recv ZSGSRD 30852
17-03-18 05:37:17.514 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.514 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.514 -07 000000474 INF: FPGA: Recv ZSGSRD 30844
17-03-18 05:37:17.524 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.524 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:17.524 -07 000000479 INF: FPGA: Recv ZSGSRD 30849
17-03-18 05:37:17.534 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.534 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:17.534 -07 000000581 INF: FPGA: Recv ZPIEZORD 26673
17-03-18 05:37:17.544 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:17.544 -07 000000480 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.2 V.
17-03-18 05:37:17.544 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30847 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30848 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30839 (-137.6 uncal um), Max = 30852 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:37:17.544 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30847, posNoise = 5, negNoise = 8
17-03-18 05:37:17.544 -07 000000480 INF: Z Motor: After move to -0.138489, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:17.544 -07 000000480 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-18 05:37:17.544 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:17.594 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1944 ms
17-03-18 05:37:17.594 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:17.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:17.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:17.594 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:17.594 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:17.594 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:17.594 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:17.594 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:17.594 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:17.604 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:17.604 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:17.604 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:17.604 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:37:17.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:17.654 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 05:37:17.954 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 05:37:17.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 05:37:17.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:17.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:17.994 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:17.994 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:17.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:37:18.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 05:37:18.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:18.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:18.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 05:37:18.194 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:18.194 -07 000000561 INF: Autofocus start
17-03-18 05:37:18.194 -07 000000561 INF: MeasureProfile start
17-03-18 05:37:18.204 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:18.204 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:18.204 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:18.214 -07 000000561 INF: MeasureProfile done
17-03-18 05:37:18.214 -07 000000561 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 05:37:18.214 -07 000000561 INF: Autofocus finished
17-03-18 05:37:18.404 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:18.404 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:18.404 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138491023948035. ----------
17-03-18 05:37:18.414 -07 000000610 INF: Cycle	139	Tile	5	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:18.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28696, sync = True, waitForSettling = True)
17-03-18 05:37:18.414 -07 000000610 INF: Z Motor: Moving to -0.131362 mm, started at -0.138491 mm, distance = 7.13 um
17-03-18 05:37:18.414 -07 000000610 INF: FPGA: Xmit ZDACW 28696\n [Z Motor]
17-03-18 05:37:18.414 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:37:18.424 -07 000000610 INF: FPGA: 'ZDACW 28696' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:18.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:18.424 -07 000000447 INF: FPGA: Recv ZDACR 28696
17-03-18 05:37:18.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:18.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29730
17-03-18 05:37:18.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:18.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29742
17-03-18 05:37:18.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.604 -07 000000012 INF: FPGA: Recv ZSGSRD 29737
17-03-18 05:37:18.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.614 -07 000000561 INF: FPGA: Recv ZSGSRD 29742
17-03-18 05:37:18.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.624 -07 000000480 INF: FPGA: Recv ZSGSRD 29736
17-03-18 05:37:18.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.634 -07 000000561 INF: FPGA: Recv ZSGSRD 29748
17-03-18 05:37:18.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.644 -07 000000474 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:37:18.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.654 -07 000000447 INF: FPGA: Recv ZSGSRD 29735
17-03-18 05:37:18.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.664 -07 000000474 INF: FPGA: Recv ZSGSRD 29734
17-03-18 05:37:18.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:18.674 -07 000000480 INF: FPGA: Recv ZSGSRD 29743
17-03-18 05:37:18.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:18.684 -07 000000618 INF: FPGA: Recv ZPIEZORD 25220
17-03-18 05:37:18.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:18.694 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.9 V.
17-03-18 05:37:18.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29739 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29740 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29730 (-130.5 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:37:18.694 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29739, posNoise = 9, negNoise = 9
17-03-18 05:37:18.694 -07 000000610 INF: Z Motor: After move to -0.131362, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:18.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:37:18.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:18.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:18.694 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:18.694 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:18.694 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:18.694 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:18.694 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:18.694 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:18.694 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:18.694 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:18.694 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:18.694 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:18.704 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:37:18.704 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:18.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:18.704 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:18.714 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:37:18.714 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:37:18.714 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:37:18.714 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:37:18.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28873 150\n [Camera]
17-03-18 05:37:18.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:19.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:19.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:19.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:19.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:19.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:19.364 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:19.364 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:19.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:37:19.364 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:19.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:37:19.544 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28873 827
17-03-18 05:37:19.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:19.754 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 05:37:19.754 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:37:19.754 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:19.764 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:37:19.764 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:37:19.764 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:19.764 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:19.764 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:37:19.764 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:19.774 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:37:19.914 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:19.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:19.914 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:19.914 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:19.914 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:37:19.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:19.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:19.914 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:19.914 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:19.914 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:37:19.924 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.99219,
17-03-18 05:37:20.104 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:20.104 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:20.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28873 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-18 05:37:20.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:20.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131372996894964. ------
17-03-18 05:37:20.224 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:20.224 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13774 mm
17-03-18 05:37:20.224 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:20.224 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 05:37:20.224 -07 000000561 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 05:37:20.234 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:20.304 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:37:20.304 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:37:20.304 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:20.304 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 05:37:20.304 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:37:20.304 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:20.314 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:20.314 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:37:20.314 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:37:20.314 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:37:20.324 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:20.324 -07 000000479 INF: FPGA: Recv YRDPOS 129481
17-03-18 05:37:20.324 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 86 ms to get response, and 101 ms overall
17-03-18 05:37:20.324 -07 000000561 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:20.324 -07 000000561 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:20.324 -07 000000561 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:37:20.324 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 96 ms to get response, and 105 ms overall
17-03-18 05:37:20.324 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:20.324 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30090, sync = True, waitForSettling = False)
17-03-18 05:37:20.324 -07 000000479 INF: Z Motor: Moving to -0.137743 mm, started at -0.131373 mm, distance = -6.37 um
17-03-18 05:37:20.334 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:20.344 -07 000000479 INF: FPGA: Xmit ZDACW 30090\n [Z Motor]
17-03-18 05:37:20.344 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:37:20.354 -07 000000479 INF: FPGA: 'ZDACW 30090' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:37:20.354 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:20.354 -07 000000618 INF: FPGA: Recv ZDACR 30090
17-03-18 05:37:20.364 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:20.364 -07 000000479 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 05:37:20.534 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:20.534 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-18 05:37:20.704 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 05:37:20.704 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 05:37:20.754 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:20.754 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:37:20.764 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:20.764 -07 000000561 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:20.764 -07 000000561 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 05:37:20.764 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.221 mm/sec
17-03-18 05:37:21.714 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:21.714 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:37:21.724 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.724 -07 000000561 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:21.754 -07 000000561 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:21.754 -07 000000561 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:21.754 -07 000000561 INF: Y Motor: Moved to 64.0562 after 1525 ms (table move)
17-03-18 05:37:21.754 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137743 mm (DAC = 30090)
17-03-18 05:37:21.754 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.754 -07 000000618 INF: FPGA: Recv ZSGSRD 30726
17-03-18 05:37:21.764 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:37:21.764 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.764 -07 000000479 INF: FPGA: Recv ZSGSRD 30721
17-03-18 05:37:21.774 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.774 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.774 -07 000000479 INF: FPGA: Recv ZSGSRD 30728
17-03-18 05:37:21.784 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.784 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:21.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:21.784 -07 000000479 INF: FPGA: Recv ZSGSRD 30734
17-03-18 05:37:21.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.794 -07 000000618 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:37:21.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.804 -07 000000479 INF: FPGA: Recv ZSGSRD 30735
17-03-18 05:37:21.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.814 -07 000000461 INF: FPGA: Recv ZSGSRD 30729
17-03-18 05:37:21.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.824 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.824 -07 000000479 INF: FPGA: Recv ZSGSRD 30729
17-03-18 05:37:21.834 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.834 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.834 -07 000000461 INF: FPGA: Recv ZSGSRD 30727
17-03-18 05:37:21.844 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.844 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:21.844 -07 000000561 INF: FPGA: Recv ZSGSRD 30724
17-03-18 05:37:21.854 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.854 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:21.854 -07 000000561 INF: FPGA: Recv ZPIEZORD 26543
17-03-18 05:37:21.864 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:21.864 -07 000000581 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.2 V.
17-03-18 05:37:21.864 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30729 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30728 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30735 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:37:21.864 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30729, posNoise = 6, negNoise = 8
17-03-18 05:37:21.864 -07 000000581 INF: Z Motor: After move to -0.137743, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:21.864 -07 000000581 INF: Z Motor: Settle wait time = 1426 ms, measure time = 106 ms (allowed 150 ms), total time = 1532 ms
17-03-18 05:37:21.864 -07 000000581 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:21.914 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1689 ms
17-03-18 05:37:21.914 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:21.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:21.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:21.914 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:21.914 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:21.914 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:21.914 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:21.914 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:21.914 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:21.924 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:21.924 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:21.934 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 05:37:21.934 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:37:21.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:21.984 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:22.284 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:22.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:22.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:22.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:22.324 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:22.324 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:22.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 05:37:22.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:37:22.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:22.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:22.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 139 ms.
17-03-18 05:37:22.524 -07 000000581 INF: Autofocus start
17-03-18 05:37:22.524 -07 000000581 INF: MeasureProfile start
17-03-18 05:37:22.524 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:22.524 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:22.534 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:22.534 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:22.534 -07 000000581 INF: MeasureProfile done
17-03-18 05:37:22.534 -07 000000581 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:37:22.534 -07 000000581 INF: Autofocus finished
17-03-18 05:37:22.734 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:22.734 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:22.734 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137732966915307. ----------
17-03-18 05:37:22.734 -07 000000610 INF: Cycle	139	Tile	6	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:22.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28614, sync = True, waitForSettling = True)
17-03-18 05:37:22.744 -07 000000610 INF: Z Motor: Moving to -0.130986 mm, started at -0.137733 mm, distance = 6.75 um
17-03-18 05:37:22.744 -07 000000610 INF: FPGA: Xmit ZDACW 28614\n [Z Motor]
17-03-18 05:37:22.744 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:37:22.754 -07 000000610 INF: FPGA: 'ZDACW 28614' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:22.754 -07 000000561 INF: FPGA: Recv ZDACR 28614
17-03-18 05:37:22.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:22.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.914 -07 000000618 INF: FPGA: Recv ZSGSRD 29683
17-03-18 05:37:22.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.924 -07 000000512 INF: FPGA: Recv ZSGSRD 29677
17-03-18 05:37:22.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.934 -07 000000561 INF: FPGA: Recv ZSGSRD 29680
17-03-18 05:37:22.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.944 -07 000000382 INF: FPGA: Recv ZSGSRD 29676
17-03-18 05:37:22.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.954 -07 000000561 INF: FPGA: Recv ZSGSRD 29681
17-03-18 05:37:22.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.964 -07 000000512 INF: FPGA: Recv ZSGSRD 29683
17-03-18 05:37:22.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.974 -07 000000461 INF: FPGA: Recv ZSGSRD 29676
17-03-18 05:37:22.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.984 -07 000000479 INF: FPGA: Recv ZSGSRD 29680
17-03-18 05:37:22.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:22.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:22.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29678
17-03-18 05:37:23.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:23.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:23.004 -07 000000581 INF: FPGA: Recv ZSGSRD 29682
17-03-18 05:37:23.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:23.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:23.014 -07 000000618 INF: FPGA: Recv ZPIEZORD 25159
17-03-18 05:37:23.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:23.024 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.9 V.
17-03-18 05:37:23.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29680 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29676 (-130.2 uncal um), Max = 29683 (-130.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:37:23.024 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29680, posNoise = 3, negNoise = 4
17-03-18 05:37:23.024 -07 000000610 INF: Z Motor: After move to -0.130986, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:23.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:37:23.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:23.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:23.024 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:23.024 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:23.024 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:23.024 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:23.024 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:23.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:23.024 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:23.024 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:23.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:23.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:23.024 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:37:23.034 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:23.034 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:37:23.034 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:23.044 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:37:23.044 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:37:23.044 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:37:23.044 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:37:23.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28791 150\n [Camera]
17-03-18 05:37:23.244 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:23.694 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:23.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:23.694 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:23.694 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:23.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:23.694 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:23.694 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:23.694 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:37:23.704 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:23.704 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:37:23.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28791 827
17-03-18 05:37:24.034 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:24.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:37:24.074 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:37:24.074 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:24.074 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:24.084 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:37:24.084 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 05:37:24.084 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:24.084 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:24.084 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:37:24.094 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:37:24.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:24.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:24.244 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:24.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:24.244 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:24.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:37:24.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:24.254 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:24.254 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:24.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:37:24.434 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:24.434 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:24.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28791 150' command took 2 ms to send, 1378 ms to get response, and 1390 ms overall
17-03-18 05:37:24.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:24.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.1309939683786. ------
17-03-18 05:37:24.444 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13750 mm
17-03-18 05:37:24.444 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:24.444 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:24.444 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 05:37:24.444 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 05:37:24.444 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30038, sync = True, waitForSettling = False)
17-03-18 05:37:24.444 -07 000000608 INF: Z Motor: Moving to -0.137505 mm, started at -0.130994 mm, distance = -6.51 um
17-03-18 05:37:24.444 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:24.454 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:24.454 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:24.454 -07 000000561 INF: FPGA: Recv YRDPOS 131187
17-03-18 05:37:24.464 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:37:24.464 -07 000000382 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:24.464 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:24.464 -07 000000382 INF: Y Motor: Moving 1338 steps-13
17-03-18 05:37:24.464 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:24.474 -07 000000608 INF: FPGA: Xmit ZDACW 30038\n [Z Motor]
17-03-18 05:37:24.474 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 05:37:24.484 -07 000000608 INF: FPGA: 'ZDACW 30038' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 05:37:24.484 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:24.494 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:24.494 -07 000000581 INF: FPGA: Recv ZDACR 30038
17-03-18 05:37:24.504 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:37:24.504 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 05:37:24.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:37:24.654 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:37:24.654 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:24.654 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:37:24.654 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 05:37:24.654 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:24.654 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:24.654 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:37:24.654 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:24.664 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:24.664 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 05:37:24.664 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 05:37:24.854 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 05:37:24.854 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 05:37:24.904 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:24.914 -07 000000561 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:37:24.914 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:24.914 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:24.914 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:37:24.914 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.102 mm/sec
17-03-18 05:37:25.284 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.997626,
17-03-18 05:37:25.864 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:25.864 -07 000000461 INF: FPGA: Recv YRDPOS 132870
17-03-18 05:37:25.874 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.874 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:25.904 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:25.904 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:25.904 -07 000000382 INF: Y Motor: Moved to 64.8779 after 1454 ms (table move)
17-03-18 05:37:25.904 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137505 mm (DAC = 30038)
17-03-18 05:37:25.904 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.904 -07 000000608 INF: FPGA: Recv ZSGSRD 30694
17-03-18 05:37:25.914 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:25.914 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.914 -07 000000461 INF: FPGA: Recv ZSGSRD 30703
17-03-18 05:37:25.924 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.924 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.924 -07 000000626 INF: FPGA: Recv ZSGSRD 30702
17-03-18 05:37:25.934 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.934 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.934 -07 000000461 INF: FPGA: Recv ZSGSRD 30695
17-03-18 05:37:25.944 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.944 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.944 -07 000000382 INF: FPGA: Recv ZSGSRD 30693
17-03-18 05:37:25.954 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.954 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.954 -07 000000626 INF: FPGA: Recv ZSGSRD 30690
17-03-18 05:37:25.964 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.964 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.964 -07 000000461 INF: FPGA: Recv ZSGSRD 30689
17-03-18 05:37:25.974 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.974 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.974 -07 000000382 INF: FPGA: Recv ZSGSRD 30687
17-03-18 05:37:25.984 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.984 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.984 -07 000000626 INF: FPGA: Recv ZSGSRD 30699
17-03-18 05:37:25.994 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:25.994 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:25.994 -07 000000608 INF: FPGA: Recv ZSGSRD 30693
17-03-18 05:37:26.004 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:26.004 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:26.004 -07 000000608 INF: FPGA: Recv ZPIEZORD 26535
17-03-18 05:37:26.014 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:26.014 -07 000000592 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.1 V.
17-03-18 05:37:26.014 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30694 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30694 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30687 (-136.7 uncal um), Max = 30703 (-136.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:37:26.014 -07 000000592 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30694, posNoise = 9, negNoise = 7
17-03-18 05:37:26.014 -07 000000592 INF: Z Motor: After move to -0.137505, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:26.014 -07 000000592 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 05:37:26.014 -07 000000592 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:26.064 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 05:37:26.064 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:26.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:26.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:26.064 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:26.064 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:26.064 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:26.064 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:26.064 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:26.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:26.074 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:26.074 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:26.074 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:26.074 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:37:26.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:26.124 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:26.424 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:26.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:26.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:26.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:37:26.464 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:26.464 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:26.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 05:37:26.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:37:26.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:26.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:26.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 05:37:26.564 -07 000000461 INF: Autofocus start
17-03-18 05:37:26.564 -07 000000461 INF: MeasureProfile start
17-03-18 05:37:26.564 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:26.564 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:26.574 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:26.574 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:26.574 -07 000000461 INF: MeasureProfile done
17-03-18 05:37:26.574 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:37:26.574 -07 000000461 INF: Autofocus finished
17-03-18 05:37:26.774 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:26.774 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 05:37:26.774 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137508119490346. ----------
17-03-18 05:37:26.774 -07 000000610 INF: Cycle	139	Tile	7	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:26.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28532, sync = True, waitForSettling = True)
17-03-18 05:37:26.784 -07 000000610 INF: Z Motor: Moving to -0.130611 mm, started at -0.137508 mm, distance = 6.90 um
17-03-18 05:37:26.784 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:26.784 -07 000000610 INF: FPGA: Xmit ZDACW 28532\n [Z Motor]
17-03-18 05:37:26.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:26.784 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:37:26.794 -07 000000610 INF: FPGA: 'ZDACW 28532' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:26.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:26.794 -07 000000626 INF: FPGA: Recv ZDACR 28532
17-03-18 05:37:26.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:26.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:26.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:26.954 -07 000000626 INF: FPGA: Recv ZSGSRD 29625
17-03-18 05:37:26.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:26.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:26.964 -07 000000608 INF: FPGA: Recv ZSGSRD 29622
17-03-18 05:37:26.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:26.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:26.974 -07 000000592 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:37:26.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:26.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:26.984 -07 000000592 INF: FPGA: Recv ZSGSRD 29620
17-03-18 05:37:26.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:26.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:26.994 -07 000000626 INF: FPGA: Recv ZSGSRD 29621
17-03-18 05:37:27.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:27.004 -07 000000592 INF: FPGA: Recv ZSGSRD 29625
17-03-18 05:37:27.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:27.014 -07 000000592 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:37:27.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:27.024 -07 000000592 INF: FPGA: Recv ZSGSRD 29622
17-03-18 05:37:27.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:27.034 -07 000000592 INF: FPGA: Recv ZSGSRD 29623
17-03-18 05:37:27.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:27.044 -07 000000608 INF: FPGA: Recv ZSGSRD 29623
17-03-18 05:37:27.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:27.054 -07 000000461 INF: FPGA: Recv ZPIEZORD 25112
17-03-18 05:37:27.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:27.064 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.9 V.
17-03-18 05:37:27.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29618 (-129.8 uncal um), Max = 29625 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:37:27.064 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 3, negNoise = 4
17-03-18 05:37:27.064 -07 000000610 INF: Z Motor: After move to -0.130611, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:27.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:37:27.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:27.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:27.064 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:27.064 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:27.064 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:27.064 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:27.064 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:27.064 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:27.064 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:27.064 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:27.064 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:27.064 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:27.074 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:37:27.074 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:27.074 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:27.074 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:27.084 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:37:27.084 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 05:37:27.084 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 05:37:27.084 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:37:27.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28709 150\n [Camera]
17-03-18 05:37:27.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:27.724 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:27.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:27.724 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:27.724 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:27.724 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 05:37:27.734 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:27.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:27.734 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:27.734 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:27.734 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 05:37:27.924 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28709 827
17-03-18 05:37:28.074 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:28.124 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:37:28.124 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:37:28.124 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:28.124 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:28.124 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:37:28.124 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:37:28.124 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 05:37:28.124 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:28.124 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:28.134 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:37:28.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:28.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:28.284 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:28.284 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:28.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 05:37:28.284 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:28.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:28.284 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:28.284 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:28.284 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 05:37:28.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:28.474 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:28.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28709 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-18 05:37:28.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:28.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130621364074378. ------
17-03-18 05:37:28.484 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:28.484 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13733 mm
17-03-18 05:37:28.484 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:28.484 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:28.484 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 05:37:28.484 -07 000000467 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 05:37:28.484 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29999, sync = True, waitForSettling = False)
17-03-18 05:37:28.484 -07 000000461 INF: Z Motor: Moving to -0.137327 mm, started at -0.130621 mm, distance = -6.71 um
17-03-18 05:37:28.494 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:28.494 -07 000000461 INF: FPGA: Xmit ZDACW 29999\n [Z Motor]
17-03-18 05:37:28.494 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:37:28.504 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:28.504 -07 000000461 INF: FPGA: 'ZDACW 29999' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:37:28.504 -07 000000012 INF: FPGA: Recv YRDPOS 132871
17-03-18 05:37:28.514 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:28.514 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:37:28.514 -07 000000467 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:28.514 -07 000000467 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:28.514 -07 000000467 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:37:28.524 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:28.524 -07 000000447 INF: FPGA: Recv ZDACR 29999
17-03-18 05:37:28.534 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:28.534 -07 000000461 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 05:37:28.534 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:28.684 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 05:37:28.684 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:37:28.684 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:28.694 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 05:37:28.694 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 05:37:28.694 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:28.694 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:28.694 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:37:28.694 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 05:37:28.704 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 05:37:28.714 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:28.714 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:37:28.904 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 05:37:28.904 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 05:37:28.954 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:28.964 -07 000000012 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:37:28.974 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:28.974 -07 000000467 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:28.974 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 05:37:28.974 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-18 05:37:29.924 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:29.924 -07 000000608 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:37:29.934 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:29.934 -07 000000467 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:29.964 -07 000000467 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:29.964 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:29.964 -07 000000467 INF: Y Motor: Moved to 65.7134 after 1484 ms (table move)
17-03-18 05:37:29.974 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137327 mm (DAC = 29999)
17-03-18 05:37:29.974 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:29.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30675
17-03-18 05:37:29.984 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:29.984 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:29.984 -07 000000467 INF: FPGA: Recv ZSGSRD 30666
17-03-18 05:37:29.994 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:29.994 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:29.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30662
17-03-18 05:37:30.004 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.004 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.004 -07 000000467 INF: FPGA: Recv ZSGSRD 30662
17-03-18 05:37:30.014 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.014 -07 000000467 INF: FPGA: Recv ZSGSRD 30664
17-03-18 05:37:30.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.024 -07 000000467 INF: FPGA: Recv ZSGSRD 30672
17-03-18 05:37:30.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30670
17-03-18 05:37:30.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.044 -07 000000467 INF: FPGA: Recv ZSGSRD 30663
17-03-18 05:37:30.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.054 -07 000000467 INF: FPGA: Recv ZSGSRD 30669
17-03-18 05:37:30.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:30.064 -07 000000467 INF: FPGA: Recv ZSGSRD 30665
17-03-18 05:37:30.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.074 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:30.074 -07 000000474 INF: FPGA: Recv ZPIEZORD 26485
17-03-18 05:37:30.084 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.084 -07 000000501 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.2 V.
17-03-18 05:37:30.084 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30667 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30662 (-136.5 uncal um), Max = 30675 (-136.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:37:30.084 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30667, posNoise = 8, negNoise = 5
17-03-18 05:37:30.084 -07 000000501 INF: Z Motor: After move to -0.137327, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:30.084 -07 000000501 INF: Z Motor: Settle wait time = 1487 ms, measure time = 109 ms (allowed 150 ms), total time = 1596 ms
17-03-18 05:37:30.084 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:30.134 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1649 ms
17-03-18 05:37:30.134 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:30.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:30.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:30.134 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:30.134 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:30.134 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:30.134 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:30.134 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:30.134 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:30.144 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:30.144 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:30.144 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:30.144 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:37:30.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:30.194 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:30.494 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:30.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:30.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:30.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 05:37:30.534 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:30.534 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:30.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:37:30.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:37:30.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:30.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:37:30.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 05:37:30.634 -07 000000480 INF: Autofocus start
17-03-18 05:37:30.634 -07 000000480 INF: MeasureProfile start
17-03-18 05:37:30.644 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:30.644 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.978563,
17-03-18 05:37:30.644 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:30.654 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:37:30.654 -07 000000480 INF: MeasureProfile done
17-03-18 05:37:30.654 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:37:30.654 -07 000000480 INF: Autofocus finished
17-03-18 05:37:30.674 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:30.874 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:30.874 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:37:30.874 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137334665762518. ----------
17-03-18 05:37:30.874 -07 000000610 INF: Cycle	139	Tile	8	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:30.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28523, sync = True, waitForSettling = True)
17-03-18 05:37:30.884 -07 000000610 INF: Z Motor: Moving to -0.130570 mm, started at -0.137335 mm, distance = 6.76 um
17-03-18 05:37:30.884 -07 000000610 INF: FPGA: Xmit ZDACW 28523\n [Z Motor]
17-03-18 05:37:30.884 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 05:37:30.894 -07 000000610 INF: FPGA: 'ZDACW 28523' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:30.894 -07 000000474 INF: FPGA: Recv ZDACR 28523
17-03-18 05:37:30.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:30.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:31.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.054 -07 000000012 INF: FPGA: Recv ZSGSRD 29621
17-03-18 05:37:31.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:31.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.064 -07 000000012 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:37:31.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:37:31.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.084 -07 000000480 INF: FPGA: Recv ZSGSRD 29618
17-03-18 05:37:31.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.094 -07 000000012 INF: FPGA: Recv ZSGSRD 29614
17-03-18 05:37:31.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:37:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.114 -07 000000012 INF: FPGA: Recv ZSGSRD 29612
17-03-18 05:37:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.124 -07 000000474 INF: FPGA: Recv ZSGSRD 29616
17-03-18 05:37:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.134 -07 000000480 INF: FPGA: Recv ZSGSRD 29616
17-03-18 05:37:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:31.144 -07 000000474 INF: FPGA: Recv ZSGSRD 29619
17-03-18 05:37:31.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:31.154 -07 000000501 INF: FPGA: Recv ZPIEZORD 25099
17-03-18 05:37:31.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:31.164 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.9 V.
17-03-18 05:37:31.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29617 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29617 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29612 (-129.8 uncal um), Max = 29621 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:37:31.164 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29617, posNoise = 4, negNoise = 5
17-03-18 05:37:31.164 -07 000000610 INF: Z Motor: After move to -0.130570, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:31.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:37:31.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:31.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:31.164 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:31.164 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:31.164 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:31.164 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:31.164 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:31.164 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:31.164 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:31.164 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:31.164 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:31.164 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:31.174 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:37:31.174 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:31.174 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:31.174 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:31.174 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:37:31.174 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:37:31.184 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:37:31.184 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:37:31.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28700 150\n [Camera]
17-03-18 05:37:31.384 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:31.784 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:31.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:31.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:31.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:31.824 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:31.824 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:31.824 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 05:37:31.824 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:31.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:31.834 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:31.834 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:31.834 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:37:32.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28700 827
17-03-18 05:37:32.164 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:32.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:37:32.224 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 05:37:32.224 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:32.224 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:37:32.224 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:37:32.224 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:32.224 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:32.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:37:32.224 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:32.234 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:37:32.384 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:32.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:32.384 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:32.384 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:32.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 05:37:32.384 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:32.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:32.384 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:32.384 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:32.384 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 05:37:32.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:37:32.574 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:32.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28700 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-18 05:37:32.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:32.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130589243013669. ------
17-03-18 05:37:32.584 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:32.584 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13690 mm
17-03-18 05:37:32.584 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:32.584 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 05:37:32.584 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29907, sync = True, waitForSettling = False)
17-03-18 05:37:32.584 -07 000000012 INF: Z Motor: Moving to -0.136905 mm, started at -0.130589 mm, distance = -6.32 um
17-03-18 05:37:32.584 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:32.584 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 05:37:32.594 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:32.594 -07 000000012 INF: FPGA: Xmit ZDACW 29907\n [Z Motor]
17-03-18 05:37:32.594 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:37:32.604 -07 000000012 INF: FPGA: 'ZDACW 29907' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:37:32.604 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:32.604 -07 000000480 INF: FPGA: Recv YRDPOS 134581
17-03-18 05:37:32.614 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:37:32.614 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:32.614 -07 000000501 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:32.614 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:32.614 -07 000000501 INF: Y Motor: Moving 1343 steps-19
17-03-18 05:37:32.624 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:32.624 -07 000000581 INF: FPGA: Recv ZDACR 29907
17-03-18 05:37:32.634 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:32.634 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:32.634 -07 000000012 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 05:37:32.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:37:32.784 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:37:32.784 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:32.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 05:37:32.784 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:37:32.784 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:32.784 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:32.784 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:37:32.784 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:37:32.794 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 05:37:32.814 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:32.814 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:37:33.004 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:37:33.004 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:37:33.054 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:33.064 -07 000000626 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:37:33.064 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:37:33.064 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:33.064 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:37:33.064 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 05:37:34.014 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:34.014 -07 000000618 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:37:34.024 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:34.024 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:34.064 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:34.064 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:34.064 -07 000000501 INF: Y Motor: Moved to 66.5386 after 1476 ms (table move)
17-03-18 05:37:34.064 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136905 mm (DAC = 29907)
17-03-18 05:37:34.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.064 -07 000000585 INF: FPGA: Recv ZSGSRD 30609
17-03-18 05:37:34.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:34.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.074 -07 000000626 INF: FPGA: Recv ZSGSRD 30602
17-03-18 05:37:34.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.084 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.084 -07 000000618 INF: FPGA: Recv ZSGSRD 30595
17-03-18 05:37:34.094 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.094 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.094 -07 000000512 INF: FPGA: Recv ZSGSRD 30591
17-03-18 05:37:34.104 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.104 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.104 -07 000000585 INF: FPGA: Recv ZSGSRD 30601
17-03-18 05:37:34.114 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.114 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.114 -07 000000480 INF: FPGA: Recv ZSGSRD 30601
17-03-18 05:37:34.124 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.124 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.124 -07 000000382 INF: FPGA: Recv ZSGSRD 30602
17-03-18 05:37:34.134 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.134 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.134 -07 000000512 INF: FPGA: Recv ZSGSRD 30599
17-03-18 05:37:34.144 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.144 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.144 -07 000000012 INF: FPGA: Recv ZSGSRD 30602
17-03-18 05:37:34.154 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.154 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:34.154 -07 000000592 INF: FPGA: Recv ZSGSRD 30608
17-03-18 05:37:34.164 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.164 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:34.164 -07 000000592 INF: FPGA: Recv ZPIEZORD 26403
17-03-18 05:37:34.174 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.174 -07 000000474 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.2 V.
17-03-18 05:37:34.174 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30601 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30602 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30591 (-136.1 uncal um), Max = 30609 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 05:37:34.174 -07 000000474 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30601, posNoise = 8, negNoise = 10
17-03-18 05:37:34.174 -07 000000474 INF: Z Motor: After move to -0.136905, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:34.174 -07 000000474 INF: Z Motor: Settle wait time = 1480 ms, measure time = 105 ms (allowed 150 ms), total time = 1585 ms
17-03-18 05:37:34.174 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:34.224 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 05:37:34.224 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:34.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:34.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:34.224 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:34.234 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:34.234 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:34.234 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:34.234 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:34.234 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:34.234 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:34.234 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:34.244 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:34.244 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:37:34.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:34.294 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:34.594 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:34.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:34.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:34.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 05:37:34.624 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:34.634 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:34.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:37:34.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:37:34.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:34.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:37:34.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:37:34.734 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:34.734 -07 000000592 INF: Autofocus start
17-03-18 05:37:34.734 -07 000000592 INF: MeasureProfile start
17-03-18 05:37:34.734 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:34.744 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:34.744 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:34.744 -07 000000592 INF: MeasureProfile done
17-03-18 05:37:34.744 -07 000000592 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:37:34.744 -07 000000592 INF: Autofocus finished
17-03-18 05:37:34.944 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:34.944 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:34.944 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136910667761162. ----------
17-03-18 05:37:34.944 -07 000000610 INF: Cycle	139	Tile	9	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:34.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28431, sync = True, waitForSettling = True)
17-03-18 05:37:34.954 -07 000000610 INF: Z Motor: Moving to -0.130149 mm, started at -0.136911 mm, distance = 6.76 um
17-03-18 05:37:34.954 -07 000000610 INF: FPGA: Xmit ZDACW 28431\n [Z Motor]
17-03-18 05:37:34.954 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 05:37:34.964 -07 000000610 INF: FPGA: 'ZDACW 28431' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:34.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:34.964 -07 000000592 INF: FPGA: Recv ZDACR 28431
17-03-18 05:37:34.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:34.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:35.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.124 -07 000000592 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:37:35.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:35.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.134 -07 000000474 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:37:35.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.144 -07 000000592 INF: FPGA: Recv ZSGSRD 29548
17-03-18 05:37:35.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.154 -07 000000592 INF: FPGA: Recv ZSGSRD 29551
17-03-18 05:37:35.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.164 -07 000000592 INF: FPGA: Recv ZSGSRD 29555
17-03-18 05:37:35.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.174 -07 000000474 INF: FPGA: Recv ZSGSRD 29558
17-03-18 05:37:35.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.184 -07 000000592 INF: FPGA: Recv ZSGSRD 29544
17-03-18 05:37:35.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.194 -07 000000592 INF: FPGA: Recv ZSGSRD 29549
17-03-18 05:37:35.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29547
17-03-18 05:37:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:35.214 -07 000000012 INF: FPGA: Recv ZSGSRD 29550
17-03-18 05:37:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:35.224 -07 000000625 INF: FPGA: Recv ZPIEZORD 25042
17-03-18 05:37:35.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:35.234 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.9 V.
17-03-18 05:37:35.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29550 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29548 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29544 (-129.3 uncal um), Max = 29558 (-129.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:37:35.234 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29550, posNoise = 8, negNoise = 6
17-03-18 05:37:35.234 -07 000000610 INF: Z Motor: After move to -0.130149, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:35.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:37:35.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:35.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:35.234 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:35.234 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:35.234 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:35.234 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:35.234 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:35.234 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:35.234 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 05:37:35.234 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:35.234 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:37:35.234 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:35.244 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:37:35.244 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:35.244 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:37:35.244 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:35.254 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 05:37:35.254 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:37:35.254 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:37:35.254 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:37:35.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28607 150\n [Camera]
17-03-18 05:37:35.454 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:35.894 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:35.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:35.904 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:35.904 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:35.904 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 05:37:35.904 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:35.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:35.904 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:35.904 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:35.904 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:37:36.024 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.986717,
17-03-18 05:37:36.094 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28607 827
17-03-18 05:37:36.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:36.284 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 05:37:36.284 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 05:37:36.284 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:36.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 05:37:36.284 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 05:37:36.284 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:36.284 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:36.284 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:36.284 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:37:36.294 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 05:37:36.454 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:36.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:36.454 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:36.454 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:36.454 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:37:36.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:36.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:36.464 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:36.464 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:36.464 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:37:36.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:37:36.644 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:36.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28607 150' command took 2 ms to send, 1377 ms to get response, and 1390 ms overall
17-03-18 05:37:36.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:36.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130158820800171. ------
17-03-18 05:37:36.654 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:36.654 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13694 mm
17-03-18 05:37:36.654 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:36.654 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:36.654 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 05:37:36.654 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29915, sync = True, waitForSettling = False)
17-03-18 05:37:36.654 -07 000000618 INF: Z Motor: Moving to -0.136942 mm, started at -0.130159 mm, distance = -6.78 um
17-03-18 05:37:36.654 -07 000000625 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 05:37:36.664 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:37:36.664 -07 000000618 INF: FPGA: Xmit ZDACW 29915\n [Z Motor]
17-03-18 05:37:36.664 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:37:36.674 -07 000000618 INF: FPGA: 'ZDACW 29915' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:37:36.674 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:36.674 -07 000000592 INF: FPGA: Recv YRDPOS 136271
17-03-18 05:37:36.684 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:36.684 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:37:36.684 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:36.684 -07 000000625 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:36.684 -07 000000625 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:37:36.694 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:36.694 -07 000000474 INF: FPGA: Recv ZDACR 29915
17-03-18 05:37:36.704 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:36.704 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:36.704 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 05:37:36.784 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:36.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:36.864 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 05:37:36.864 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:37:36.864 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:36.864 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:37:36.864 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:37:36.864 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:36.864 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:36.864 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:37:36.864 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 05:37:36.874 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:37:36.884 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:36.884 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:37:37.074 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 05:37:37.074 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 05:37:37.124 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:37.134 -07 000000480 INF: FPGA: Recv YRDPOS 137976
17-03-18 05:37:37.134 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:37:37.134 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:37.134 -07 000000625 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 05:37:37.134 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.115 mm/sec
17-03-18 05:37:38.084 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:38.084 -07 000000608 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:37:38.094 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:38.094 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:38.124 -07 000000625 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:38.124 -07 000000625 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 05:37:38.124 -07 000000625 INF: Y Motor: Moved to 67.3716 after 1467 ms (table move)
17-03-18 05:37:38.124 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136942 mm (DAC = 29915)
17-03-18 05:37:38.124 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.134 -07 000000618 INF: FPGA: Recv ZSGSRD 30605
17-03-18 05:37:38.134 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:37:38.134 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30606
17-03-18 05:37:38.144 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:38.144 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.144 -07 000000447 INF: FPGA: Recv ZSGSRD 30598
17-03-18 05:37:38.154 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:38.154 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.154 -07 000000382 INF: FPGA: Recv ZSGSRD 30602
17-03-18 05:37:38.164 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:38.164 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.164 -07 000000474 INF: FPGA: Recv ZSGSRD 30612
17-03-18 05:37:38.174 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:38.174 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.974 -07 000000608 INF: FPGA: Recv ZSGSRD 30611
17-03-18 05:37:38.974 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-18 05:37:38.994 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:38.994 -07 000000474 INF: FPGA: Recv ZSGSRD 30603
17-03-18 05:37:39.004 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:39.004 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.004 -07 000000461 INF: FPGA: Recv ZSGSRD 30606
17-03-18 05:37:39.014 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.034 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.034 -07 000000608 INF: FPGA: Recv ZSGSRD 30612
17-03-18 05:37:39.044 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:39.044 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.044 -07 000000618 INF: FPGA: Recv ZSGSRD 30609
17-03-18 05:37:39.054 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.054 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:39.054 -07 000000618 INF: FPGA: Recv ZPIEZORD 26424
17-03-18 05:37:39.064 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.064 -07 000000467 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.565 V. Piezo Error = -9.2 V.
17-03-18 05:37:39.064 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30606 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30606 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30598 (-136.1 uncal um), Max = 30612 (-136.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:37:39.064 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30606, posNoise = 6, negNoise = 8
17-03-18 05:37:39.064 -07 000000467 INF: Z Motor: After move to -0.136942, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:39.064 -07 000000467 INF: Z Motor: Settle wait time = 1470 ms, measure time = 933 ms (allowed 150 ms), total time = 2403 ms
17-03-18 05:37:39.064 -07 000000467 INF: Z Motor: Warning: Actual position measuring time = 933 ms, longer than max expected time of 150 ms
17-03-18 05:37:39.064 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2409 ms
17-03-18 05:37:39.064 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:39.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:39.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:39.064 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:39.064 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:39.064 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:39.064 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:39.064 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:39.064 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:39.074 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:39.074 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:39.084 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 05:37:39.084 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 05:37:39.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:39.134 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:39.434 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:39.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:39.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:39.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 05:37:39.474 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:39.474 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:39.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 05:37:39.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:37:39.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:39.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:37:39.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:37:39.574 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:39.574 -07 000000479 INF: Autofocus start
17-03-18 05:37:39.574 -07 000000479 INF: MeasureProfile start
17-03-18 05:37:39.574 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:39.584 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:39.584 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:39.584 -07 000000479 INF: MeasureProfile done
17-03-18 05:37:39.584 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:37:39.584 -07 000000479 INF: Autofocus finished
17-03-18 05:37:39.784 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:39.784 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:39.784 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.136942788821871. ----------
17-03-18 05:37:39.784 -07 000000610 INF: Cycle	139	Tile	10	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:39.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28422, sync = True, waitForSettling = True)
17-03-18 05:37:39.794 -07 000000610 INF: Z Motor: Moving to -0.130108 mm, started at -0.136943 mm, distance = 6.84 um
17-03-18 05:37:39.794 -07 000000610 INF: FPGA: Xmit ZDACW 28422\n [Z Motor]
17-03-18 05:37:39.794 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:37:39.804 -07 000000610 INF: FPGA: 'ZDACW 28422' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:39.804 -07 000000467 INF: FPGA: Recv ZDACR 28422
17-03-18 05:37:39.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:39.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.964 -07 000000461 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:39.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29539
17-03-18 05:37:39.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.984 -07 000000474 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:39.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:39.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:39.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:40.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:40.004 -07 000000479 INF: FPGA: Recv ZSGSRD 29538
17-03-18 05:37:40.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:40.014 -07 000000585 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:40.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:40.024 -07 000000480 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:40.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:40.034 -07 000000480 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:40.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:40.044 -07 000000480 INF: FPGA: Recv ZSGSRD 29538
17-03-18 05:37:40.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:40.054 -07 000000479 INF: FPGA: Recv ZSGSRD 29543
17-03-18 05:37:40.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:40.064 -07 000000479 INF: FPGA: Recv ZPIEZORD 25048
17-03-18 05:37:40.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:40.074 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.9 V.
17-03-18 05:37:40.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29542 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29543 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29538 (-129.3 uncal um), Max = 29543 (-129.3 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:37:40.074 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29542, posNoise = 1, negNoise = 4
17-03-18 05:37:40.074 -07 000000610 INF: Z Motor: After move to -0.130108, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:40.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 05:37:40.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:40.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:40.074 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:40.074 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:40.074 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:40.074 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:40.074 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:40.074 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:40.074 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:40.074 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:40.074 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:40.074 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:40.074 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:37:40.074 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:40.084 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 05:37:40.084 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:40.094 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:37:40.094 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:37:40.094 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:37:40.094 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 05:37:40.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28599 150\n [Camera]
17-03-18 05:37:40.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:40.744 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:40.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:40.744 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:40.744 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:40.744 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 05:37:40.744 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:40.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:40.744 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:40.744 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:40.744 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 05:37:40.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28599 827
17-03-18 05:37:41.084 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:41.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 05:37:41.144 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 05:37:41.144 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:41.144 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:37:41.144 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:37:41.144 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:41.144 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:41.144 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 05:37:41.144 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:41.154 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:37:41.294 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:41.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:41.294 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:41.294 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:41.294 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 05:37:41.304 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:41.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:41.304 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:41.304 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:41.304 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 05:37:41.484 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.98264,
17-03-18 05:37:41.484 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:41.494 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:41.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28599 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-18 05:37:41.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:41.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130107427103037. ------
17-03-18 05:37:41.494 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13652 mm
17-03-18 05:37:41.494 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:41.494 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 05:37:41.494 -07 000000585 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 05:37:41.494 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29823, sync = True, waitForSettling = False)
17-03-18 05:37:41.494 -07 000000618 INF: Z Motor: Moving to -0.136521 mm, started at -0.130107 mm, distance = -6.41 um
17-03-18 05:37:41.504 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:41.504 -07 000000447 INF: FPGA: Recv YRDPOS 137977
17-03-18 05:37:41.514 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:41.514 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 05:37:41.514 -07 000000585 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:41.514 -07 000000585 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:41.514 -07 000000585 INF: Y Motor: Moving 1346 steps-24
17-03-18 05:37:41.514 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:41.524 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 05:37:41.524 -07 000000618 INF: FPGA: Xmit ZDACW 29823\n [Z Motor]
17-03-18 05:37:41.524 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 05:37:41.534 -07 000000618 INF: FPGA: 'ZDACW 29823' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 05:37:41.544 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:41.554 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:41.564 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:41.564 -07 000000461 INF: FPGA: Recv ZDACR 29823
17-03-18 05:37:41.574 -07 000000618 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 05:37:41.574 -07 000000618 INF: Z Motor: MoveAbsStepped took 72 ms (did NOT wait for settling yet))
17-03-18 05:37:41.714 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 412 ms.
17-03-18 05:37:41.714 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 05:37:41.714 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:41.714 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 415 ms.
17-03-18 05:37:41.714 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:37:41.714 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:41.714 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:41.724 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:37:41.724 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 423 ms.
17-03-18 05:37:41.724 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 05:37:41.754 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:41.754 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 05:37:41.784 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:41.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:41.914 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:37:41.914 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 05:37:41.964 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:41.974 -07 000000501 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:37:41.974 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:41.974 -07 000000585 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:41.974 -07 000000585 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 05:37:41.974 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.841 mm, average velocity = 2.066 mm/sec
17-03-18 05:37:42.924 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:42.924 -07 000000625 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:37:42.934 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:42.934 -07 000000585 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:42.964 -07 000000585 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:42.964 -07 000000585 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:42.964 -07 000000585 INF: Y Motor: Moved to 68.2046 after 1464 ms (table move)
17-03-18 05:37:42.964 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136521 mm (DAC = 29823)
17-03-18 05:37:42.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:42.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30542
17-03-18 05:37:42.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:37:42.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:42.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30549
17-03-18 05:37:42.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:42.984 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:42.984 -07 000000467 INF: FPGA: Recv ZSGSRD 30541
17-03-18 05:37:42.994 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:42.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:42.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30535
17-03-18 05:37:43.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:43.004 -07 000000467 INF: FPGA: Recv ZSGSRD 30537
17-03-18 05:37:43.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:43.014 -07 000000467 INF: FPGA: Recv ZSGSRD 30533
17-03-18 05:37:43.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:43.024 -07 000000501 INF: FPGA: Recv ZSGSRD 30549
17-03-18 05:37:43.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:43.034 -07 000000608 INF: FPGA: Recv ZSGSRD 30542
17-03-18 05:37:43.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:43.044 -07 000000608 INF: FPGA: Recv ZSGSRD 30546
17-03-18 05:37:43.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:43.054 -07 000000608 INF: FPGA: Recv ZSGSRD 30538
17-03-18 05:37:43.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.064 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:43.064 -07 000000461 INF: FPGA: Recv ZPIEZORD 26360
17-03-18 05:37:43.074 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.074 -07 000000474 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.2 V.
17-03-18 05:37:43.074 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30541 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30542 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30533 (-135.7 uncal um), Max = 30549 (-135.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:37:43.074 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30541, posNoise = 8, negNoise = 8
17-03-18 05:37:43.074 -07 000000474 INF: Z Motor: After move to -0.136521, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:43.074 -07 000000474 INF: Z Motor: Settle wait time = 1467 ms, measure time = 105 ms (allowed 150 ms), total time = 1572 ms
17-03-18 05:37:43.074 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:43.124 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:37:43.124 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:43.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:43.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:43.124 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:43.124 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:43.124 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:43.124 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:43.124 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:43.124 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:43.134 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:43.134 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:43.134 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:43.134 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:37:43.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:43.184 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:43.484 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:43.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:43.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:43.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:43.524 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:43.524 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:43.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 05:37:43.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 05:37:43.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:43.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:43.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 05:37:43.624 -07 000000479 INF: Autofocus start
17-03-18 05:37:43.624 -07 000000479 INF: MeasureProfile start
17-03-18 05:37:43.624 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:43.624 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:43.634 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:43.634 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:43.634 -07 000000479 INF: MeasureProfile done
17-03-18 05:37:43.634 -07 000000479 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:37:43.634 -07 000000479 INF: Autofocus finished
17-03-18 05:37:43.834 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:43.834 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:43.834 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136525215032656. ----------
17-03-18 05:37:43.834 -07 000000610 INF: Cycle	139	Tile	11	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:43.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28330, sync = True, waitForSettling = True)
17-03-18 05:37:43.844 -07 000000610 INF: Z Motor: Moving to -0.129686 mm, started at -0.136525 mm, distance = 6.84 um
17-03-18 05:37:43.844 -07 000000610 INF: FPGA: Xmit ZDACW 28330\n [Z Motor]
17-03-18 05:37:43.844 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:37:43.854 -07 000000610 INF: FPGA: 'ZDACW 28330' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:43.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:43.854 -07 000000479 INF: FPGA: Recv ZDACR 28330
17-03-18 05:37:43.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:43.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:44.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.014 -07 000000480 INF: FPGA: Recv ZSGSRD 29483
17-03-18 05:37:44.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:44.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.024 -07 000000585 INF: FPGA: Recv ZSGSRD 29474
17-03-18 05:37:44.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.044 -07 000000447 INF: FPGA: Recv ZSGSRD 29479
17-03-18 05:37:44.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:37:44.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.054 -07 000000467 INF: FPGA: Recv ZSGSRD 29478
17-03-18 05:37:44.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.064 -07 000000501 INF: FPGA: Recv ZSGSRD 29482
17-03-18 05:37:44.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.074 -07 000000467 INF: FPGA: Recv ZSGSRD 29472
17-03-18 05:37:44.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.084 -07 000000501 INF: FPGA: Recv ZSGSRD 29483
17-03-18 05:37:44.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.094 -07 000000467 INF: FPGA: Recv ZSGSRD 29481
17-03-18 05:37:44.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.104 -07 000000625 INF: FPGA: Recv ZSGSRD 29470
17-03-18 05:37:44.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:44.114 -07 000000501 INF: FPGA: Recv ZSGSRD 29480
17-03-18 05:37:44.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:44.124 -07 000000625 INF: FPGA: Recv ZPIEZORD 24955
17-03-18 05:37:44.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:44.134 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.9 V.
17-03-18 05:37:44.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29478 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29480 (-128.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29470 (-128.9 uncal um), Max = 29483 (-129.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:37:44.134 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29478, posNoise = 5, negNoise = 8
17-03-18 05:37:44.134 -07 000000610 INF: Z Motor: After move to -0.129686, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:44.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 05:37:44.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:44.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:44.134 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:44.134 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:44.134 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:44.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:44.134 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:44.134 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:44.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:44.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:44.134 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:44.134 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:44.144 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:37:44.144 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:44.144 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:44.144 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:44.154 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:37:44.154 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:37:44.154 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:37:44.154 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:37:44.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28507 150\n [Camera]
17-03-18 05:37:44.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:44.804 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:44.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:44.804 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:44.804 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:44.804 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:37:44.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:44.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:44.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:44.814 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:44.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 05:37:44.994 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28507 827
17-03-18 05:37:45.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:45.194 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:37:45.194 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:37:45.194 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:45.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 05:37:45.204 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 05:37:45.204 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:45.204 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:45.204 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 05:37:45.204 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:45.214 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 05:37:45.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:45.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:45.354 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:45.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:45.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:45.364 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:45.484 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:45.484 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 05:37:45.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:45.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 05:37:45.544 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:45.544 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:45.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28507 150' command took 2 ms to send, 1379 ms to get response, and 1389 ms overall
17-03-18 05:37:45.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:45.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129696277525964. ------
17-03-18 05:37:45.554 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:45.554 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13633 mm
17-03-18 05:37:45.554 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:45.554 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:45.554 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29781, sync = True, waitForSettling = False)
17-03-18 05:37:45.554 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 05:37:45.554 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 05:37:45.554 -07 000000585 INF: Z Motor: Moving to -0.136329 mm, started at -0.129696 mm, distance = -6.63 um
17-03-18 05:37:45.564 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:37:45.564 -07 000000585 INF: FPGA: Xmit ZDACW 29781\n [Z Motor]
17-03-18 05:37:45.564 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 05:37:45.574 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:45.574 -07 000000585 INF: FPGA: 'ZDACW 29781' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:37:45.574 -07 000000447 INF: FPGA: Recv YRDPOS 139683
17-03-18 05:37:45.584 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 05:37:45.584 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:45.584 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:45.584 -07 000000480 INF: Y Motor: Moving 1341 steps-16
17-03-18 05:37:45.584 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:45.594 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:45.594 -07 000000447 INF: FPGA: Recv ZDACR 29781
17-03-18 05:37:45.604 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:45.604 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:45.604 -07 000000585 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 05:37:45.784 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:45.784 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 05:37:45.884 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 05:37:45.884 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:37:45.884 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:45.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 05:37:45.884 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:37:45.884 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:45.884 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:45.884 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:45.884 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-18 05:37:45.894 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 05:37:45.974 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 05:37:45.974 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 05:37:46.024 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:46.034 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:37:46.034 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:46.034 -07 000000480 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:46.034 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 05:37:46.034 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 05:37:46.784 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:46.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:46.904 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.994908,
17-03-18 05:37:46.984 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:46.984 -07 000000618 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:37:46.994 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:46.994 -07 000000480 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:47.024 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:47.024 -07 000000480 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:47.024 -07 000000480 INF: Y Motor: Moved to 69.0264 after 1463 ms (table move)
17-03-18 05:37:47.024 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136329 mm (DAC = 29781)
17-03-18 05:37:47.024 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.034 -07 000000479 INF: FPGA: Recv ZSGSRD 30506
17-03-18 05:37:47.034 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:37:47.034 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.034 -07 000000461 INF: FPGA: Recv ZSGSRD 30517
17-03-18 05:37:47.044 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:47.044 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.044 -07 000000480 INF: FPGA: Recv ZSGSRD 30508
17-03-18 05:37:47.054 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.054 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.054 -07 000000467 INF: FPGA: Recv ZSGSRD 30505
17-03-18 05:37:47.064 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.064 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.064 -07 000000467 INF: FPGA: Recv ZSGSRD 30510
17-03-18 05:37:47.074 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.074 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.074 -07 000000447 INF: FPGA: Recv ZSGSRD 30507
17-03-18 05:37:47.084 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.084 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.084 -07 000000461 INF: FPGA: Recv ZSGSRD 30512
17-03-18 05:37:47.094 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.094 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.094 -07 000000467 INF: FPGA: Recv ZSGSRD 30514
17-03-18 05:37:47.104 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.104 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.104 -07 000000501 INF: FPGA: Recv ZSGSRD 30513
17-03-18 05:37:47.114 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:47.114 -07 000000479 INF: FPGA: Recv ZSGSRD 30516
17-03-18 05:37:47.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.124 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:47.124 -07 000000480 INF: FPGA: Recv ZPIEZORD 26339
17-03-18 05:37:47.134 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.134 -07 000000625 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.2 V.
17-03-18 05:37:47.134 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30511 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30511 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30505 (-135.5 uncal um), Max = 30517 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:37:47.134 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30511, posNoise = 6, negNoise = 6
17-03-18 05:37:47.134 -07 000000625 INF: Z Motor: After move to -0.136329, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:47.134 -07 000000625 INF: Z Motor: Settle wait time = 1469 ms, measure time = 102 ms (allowed 150 ms), total time = 1571 ms
17-03-18 05:37:47.134 -07 000000625 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:47.184 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 05:37:47.184 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:47.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:47.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:47.184 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:47.184 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:47.184 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:47.184 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:47.184 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:47.184 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:47.194 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:47.194 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:47.194 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:37:47.194 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:37:47.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:47.244 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:47.544 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:47.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:47.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:47.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:37:47.584 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:47.584 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:47.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 05:37:47.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:37:47.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:47.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:47.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:37:47.684 -07 000000585 INF: Autofocus start
17-03-18 05:37:47.684 -07 000000585 INF: MeasureProfile start
17-03-18 05:37:47.684 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:47.684 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:47.694 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:47.694 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:47.694 -07 000000585 INF: MeasureProfile done
17-03-18 05:37:47.694 -07 000000585 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:37:47.694 -07 000000585 INF: Autofocus finished
17-03-18 05:37:47.894 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:47.894 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:47.894 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136332488668404. ----------
17-03-18 05:37:47.894 -07 000000610 INF: Cycle	139	Tile	12	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:47.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28305, sync = True, waitForSettling = True)
17-03-18 05:37:47.904 -07 000000610 INF: Z Motor: Moving to -0.129572 mm, started at -0.136332 mm, distance = 6.76 um
17-03-18 05:37:47.904 -07 000000610 INF: FPGA: Xmit ZDACW 28305\n [Z Motor]
17-03-18 05:37:47.904 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:37:47.914 -07 000000610 INF: FPGA: 'ZDACW 28305' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:47.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:47.914 -07 000000461 INF: FPGA: Recv ZDACR 28305
17-03-18 05:37:47.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:47.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:48.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.074 -07 000000585 INF: FPGA: Recv ZSGSRD 29459
17-03-18 05:37:48.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:48.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.084 -07 000000585 INF: FPGA: Recv ZSGSRD 29462
17-03-18 05:37:48.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.094 -07 000000585 INF: FPGA: Recv ZSGSRD 29457
17-03-18 05:37:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.104 -07 000000585 INF: FPGA: Recv ZSGSRD 29458
17-03-18 05:37:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.114 -07 000000585 INF: FPGA: Recv ZSGSRD 29460
17-03-18 05:37:48.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29463
17-03-18 05:37:48.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.134 -07 000000447 INF: FPGA: Recv ZSGSRD 29455
17-03-18 05:37:48.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.144 -07 000000585 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:37:48.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.154 -07 000000501 INF: FPGA: Recv ZSGSRD 29456
17-03-18 05:37:48.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:48.164 -07 000000585 INF: FPGA: Recv ZSGSRD 29463
17-03-18 05:37:48.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:48.174 -07 000000585 INF: FPGA: Recv ZPIEZORD 24941
17-03-18 05:37:48.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:48.184 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.9 V.
17-03-18 05:37:48.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29455 (-128.8 uncal um), Max = 29463 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:37:48.184 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 4, negNoise = 4
17-03-18 05:37:48.184 -07 000000610 INF: Z Motor: After move to -0.129572, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:48.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:37:48.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:48.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:48.184 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:48.184 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:48.184 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:48.184 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:48.184 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:48.184 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:48.184 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:48.184 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:48.184 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:48.184 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:48.194 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:37:48.194 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:48.194 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:48.194 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:48.204 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 05:37:48.204 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:37:48.204 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:37:48.204 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:37:48.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28481 150\n [Camera]
17-03-18 05:37:48.404 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:48.844 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:48.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:48.844 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:48.844 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:48.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:48.854 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:48.854 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:48.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 05:37:48.854 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:48.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 05:37:49.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 827
17-03-18 05:37:49.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:49.234 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:37:49.234 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:37:49.234 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:49.234 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:49.244 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:37:49.244 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:37:49.244 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:49.244 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:49.244 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:37:49.244 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:37:49.404 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:49.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:49.404 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:49.404 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:49.404 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:37:49.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:49.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:49.404 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:49.404 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:49.404 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 05:37:49.594 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:49.594 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:49.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28481 150' command took 2 ms to send, 1384 ms to get response, and 1389 ms overall
17-03-18 05:37:49.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:49.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129574217495271. ------
17-03-18 05:37:49.594 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13610 mm
17-03-18 05:37:49.594 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:49.594 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:49.604 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:49.604 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:37:49.604 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:49.604 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29730, sync = True, waitForSettling = False)
17-03-18 05:37:49.604 -07 000000501 INF: Z Motor: Moving to -0.136095 mm, started at -0.129574 mm, distance = -6.52 um
17-03-18 05:37:49.604 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 05:37:49.604 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 05:37:49.614 -07 000000501 INF: FPGA: Xmit ZDACW 29730\n [Z Motor]
17-03-18 05:37:49.614 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 05:37:49.624 -07 000000501 INF: FPGA: 'ZDACW 29730' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:37:49.624 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:49.624 -07 000000585 INF: FPGA: Recv YRDPOS 141366
17-03-18 05:37:49.634 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:37:49.634 -07 000000618 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:49.634 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:49.634 -07 000000618 INF: Y Motor: Moving 1354 steps-33
17-03-18 05:37:49.634 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:49.634 -07 000000626 INF: FPGA: Recv ZDACR 29730
17-03-18 05:37:49.644 -07 000000501 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:37:49.644 -07 000000501 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 05:37:49.644 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:49.804 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:37:49.804 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 05:37:49.804 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:49.804 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:49.804 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 204 ms overall
17-03-18 05:37:49.804 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 05:37:49.804 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 05:37:49.804 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:49.814 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:49.814 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 05:37:49.814 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:49.814 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:37:50.014 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 05:37:50.014 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:37:50.064 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:50.074 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:37:50.074 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:37:50.074 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:50.074 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 05:37:50.074 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.187 mm/sec
17-03-18 05:37:51.024 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:51.024 -07 000000625 INF: FPGA: Recv YRDPOS 143079
17-03-18 05:37:51.034 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:51.034 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:51.064 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:51.064 -07 000000618 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:51.064 -07 000000618 INF: Y Motor: Moved to 69.8628 after 1458 ms (table move)
17-03-18 05:37:51.064 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136095 mm (DAC = 29730)
17-03-18 05:37:51.064 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.064 -07 000000012 INF: FPGA: Recv ZSGSRD 30475
17-03-18 05:37:51.074 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:51.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.074 -07 000000611 INF: FPGA: Recv ZSGSRD 30481
17-03-18 05:37:51.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.084 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.084 -07 000000581 INF: FPGA: Recv ZSGSRD 30473
17-03-18 05:37:51.094 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.094 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.094 -07 000000561 INF: FPGA: Recv ZSGSRD 30466
17-03-18 05:37:51.104 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.104 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.104 -07 000000480 INF: FPGA: Recv ZSGSRD 30464
17-03-18 05:37:51.114 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.114 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.114 -07 000000501 INF: FPGA: Recv ZSGSRD 30479
17-03-18 05:37:51.124 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.124 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.124 -07 000000585 INF: FPGA: Recv ZSGSRD 30480
17-03-18 05:37:51.134 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.134 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.134 -07 000000467 INF: FPGA: Recv ZSGSRD 30472
17-03-18 05:37:51.144 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.144 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.144 -07 000000592 INF: FPGA: Recv ZSGSRD 30480
17-03-18 05:37:51.154 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.154 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:51.154 -07 000000626 INF: FPGA: Recv ZSGSRD 30486
17-03-18 05:37:51.164 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.164 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:51.164 -07 000000461 INF: FPGA: Recv ZPIEZORD 26294
17-03-18 05:37:51.174 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:51.174 -07 000000479 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -9.2 V.
17-03-18 05:37:51.174 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30476 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30477 (-135.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30464 (-135.2 uncal um), Max = 30486 (-135.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 05:37:51.174 -07 000000479 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30476, posNoise = 10, negNoise = 12
17-03-18 05:37:51.174 -07 000000479 INF: Z Motor: After move to -0.136095, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:51.174 -07 000000479 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 05:37:51.174 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:51.224 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 05:37:51.224 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:51.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:51.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:51.224 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:51.224 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:51.224 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:51.224 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:51.224 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:51.224 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:51.234 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:51.234 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:51.234 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:51.234 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:37:51.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:51.284 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:51.584 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:51.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:51.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:51.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2302985888, 0x0, 559484976) start.
17-03-18 05:37:51.624 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:51.624 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:51.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:37:51.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2302985888, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:37:51.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:51.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 05:37:51.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:37:51.724 -07 000000618 INF: Autofocus start
17-03-18 05:37:51.724 -07 000000618 INF: MeasureProfile start
17-03-18 05:37:51.724 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:51.724 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:51.734 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:51.734 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:51.734 -07 000000618 INF: MeasureProfile done
17-03-18 05:37:51.734 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:37:51.734 -07 000000618 INF: Autofocus finished
17-03-18 05:37:51.784 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:51.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:51.934 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:51.934 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:51.934 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136107641243442. ----------
17-03-18 05:37:51.944 -07 000000610 INF: Cycle	139	Tile	13	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:51.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28238, sync = True, waitForSettling = True)
17-03-18 05:37:51.944 -07 000000610 INF: Z Motor: Moving to -0.129265 mm, started at -0.136108 mm, distance = 6.84 um
17-03-18 05:37:51.954 -07 000000610 INF: FPGA: Xmit ZDACW 28238\n [Z Motor]
17-03-18 05:37:51.954 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 05:37:51.964 -07 000000610 INF: FPGA: 'ZDACW 28238' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:37:51.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:51.964 -07 000000626 INF: FPGA: Recv ZDACR 28238
17-03-18 05:37:51.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:51.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:52.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.124 -07 000000447 INF: FPGA: Recv ZSGSRD 29404
17-03-18 05:37:52.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:52.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.134 -07 000000581 INF: FPGA: Recv ZSGSRD 29418
17-03-18 05:37:52.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29417
17-03-18 05:37:52.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29401
17-03-18 05:37:52.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.164 -07 000000480 INF: FPGA: Recv ZSGSRD 29401
17-03-18 05:37:52.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.174 -07 000000626 INF: FPGA: Recv ZSGSRD 29411
17-03-18 05:37:52.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.184 -07 000000382 INF: FPGA: Recv ZSGSRD 29416
17-03-18 05:37:52.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.194 -07 000000581 INF: FPGA: Recv ZSGSRD 29408
17-03-18 05:37:52.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.204 -07 000000608 INF: FPGA: Recv ZSGSRD 29407
17-03-18 05:37:52.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:52.214 -07 000000581 INF: FPGA: Recv ZSGSRD 29419
17-03-18 05:37:52.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:52.224 -07 000000608 INF: FPGA: Recv ZPIEZORD 24861
17-03-18 05:37:52.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:52.234 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -10.0 V.
17-03-18 05:37:52.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29410 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29410 (-128.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29401 (-128.4 uncal um), Max = 29419 (-128.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:37:52.234 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29410, posNoise = 9, negNoise = 9
17-03-18 05:37:52.234 -07 000000610 INF: Z Motor: After move to -0.129265, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:52.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 05:37:52.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:52.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:52.234 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:52.234 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:52.234 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:52.234 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:52.234 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:52.234 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:52.234 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:52.234 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:52.234 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:52.234 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:52.234 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:37:52.244 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:52.244 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:37:52.244 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:52.254 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 05:37:52.254 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:37:52.254 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:37:52.254 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:37:52.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28414 150\n [Camera]
17-03-18 05:37:52.264 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.024884,
17-03-18 05:37:52.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:52.904 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:52.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:52.904 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:52.904 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:52.904 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:37:52.904 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:52.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:52.904 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:52.904 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:52.904 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 05:37:53.094 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28414 827
17-03-18 05:37:53.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:53.294 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:37:53.294 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:37:53.294 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:53.294 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:37:53.294 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:37:53.294 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:53.294 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:53.294 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:37:53.304 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:53.304 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:37:53.454 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:37:53.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:37:53.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:53.574 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:37:53.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:37:53.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:53.574 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:53.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 05:37:53.584 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:53.584 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:37:53.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:37:53.654 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:53.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28414 150' command took 2 ms to send, 1380 ms to get response, and 1393 ms overall
17-03-18 05:37:53.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:53.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129259431100325. ------
17-03-18 05:37:53.654 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:53.654 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13562 mm
17-03-18 05:37:53.654 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:53.654 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 05:37:53.664 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 05:37:53.664 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:53.664 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:53.664 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29626, sync = True, waitForSettling = False)
17-03-18 05:37:53.664 -07 000000585 INF: Z Motor: Moving to -0.135619 mm, started at -0.129259 mm, distance = -6.36 um
17-03-18 05:37:53.664 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:53.674 -07 000000585 INF: FPGA: Xmit ZDACW 29626\n [Z Motor]
17-03-18 05:37:53.674 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:37:53.684 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:53.684 -07 000000585 INF: FPGA: 'ZDACW 29626' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 05:37:53.684 -07 000000625 INF: FPGA: Recv YRDPOS 143080
17-03-18 05:37:53.694 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:53.694 -07 000000382 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:53.694 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:53.694 -07 000000625 INF: FPGA: Recv ZDACR 29626
17-03-18 05:37:53.694 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:53.694 -07 000000382 INF: Y Motor: Moving 1343 steps-20
17-03-18 05:37:53.704 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:37:53.704 -07 000000585 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 05:37:53.704 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:53.864 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:53.864 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 05:37:53.964 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 05:37:53.964 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 05:37:53.964 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:53.964 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:53.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 05:37:53.964 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:37:53.964 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:53.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:37:53.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 05:37:53.974 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:37:54.074 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 05:37:54.074 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 05:37:54.124 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:54.134 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:37:54.134 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:37:54.134 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:54.134 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 05:37:54.134 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.187 mm/sec
17-03-18 05:37:55.084 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:55.084 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:37:55.094 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:55.094 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:55.134 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:55.134 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:55.134 -07 000000382 INF: Y Motor: Moved to 70.6880 after 1471 ms (table move)
17-03-18 05:37:55.134 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135619 mm (DAC = 29626)
17-03-18 05:37:55.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.134 -07 000000382 INF: FPGA: Recv ZSGSRD 30412
17-03-18 05:37:55.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:55.144 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.144 -07 000000012 INF: FPGA: Recv ZSGSRD 30400
17-03-18 05:37:55.154 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.154 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.154 -07 000000474 INF: FPGA: Recv ZSGSRD 30392
17-03-18 05:37:55.164 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.164 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.164 -07 000000625 INF: FPGA: Recv ZSGSRD 30401
17-03-18 05:37:55.174 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.174 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.174 -07 000000626 INF: FPGA: Recv ZSGSRD 30390
17-03-18 05:37:55.184 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.184 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.184 -07 000000480 INF: FPGA: Recv ZSGSRD 30407
17-03-18 05:37:55.194 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.194 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.194 -07 000000012 INF: FPGA: Recv ZSGSRD 30408
17-03-18 05:37:55.204 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.204 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.204 -07 000000012 INF: FPGA: Recv ZSGSRD 30403
17-03-18 05:37:55.214 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.214 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.214 -07 000000480 INF: FPGA: Recv ZSGSRD 30404
17-03-18 05:37:55.224 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.224 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:55.224 -07 000000608 INF: FPGA: Recv ZSGSRD 30398
17-03-18 05:37:55.234 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.234 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:55.234 -07 000000626 INF: FPGA: Recv ZPIEZORD 26205
17-03-18 05:37:55.244 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:55.244 -07 000000581 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.521 V. Piezo Error = -9.2 V.
17-03-18 05:37:55.244 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30402 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30402 (-134.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30390 (-134.8 uncal um), Max = 30412 (-134.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 05:37:55.244 -07 000000581 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30402, posNoise = 10, negNoise = 12
17-03-18 05:37:55.244 -07 000000581 INF: Z Motor: After move to -0.135619, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:55.244 -07 000000581 INF: Z Motor: Settle wait time = 1474 ms, measure time = 105 ms (allowed 150 ms), total time = 1579 ms
17-03-18 05:37:55.244 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:55.294 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 05:37:55.294 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:55.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:55.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:55.294 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:55.294 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:55.294 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:55.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:55.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:55.294 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:55.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:55.304 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:55.304 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:55.304 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:37:55.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:55.354 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:55.654 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:55.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:55.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:55.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592345376, 0x0, 559484976) start.
17-03-18 05:37:55.694 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:55.694 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:55.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:37:55.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592345376, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 05:37:55.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:55.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:55.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:37:55.794 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:55.794 -07 000000512 INF: Autofocus start
17-03-18 05:37:55.794 -07 000000512 INF: MeasureProfile start
17-03-18 05:37:55.794 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:55.804 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:55.804 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:55.804 -07 000000512 INF: MeasureProfile done
17-03-18 05:37:55.804 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:37:55.804 -07 000000512 INF: Autofocus finished
17-03-18 05:37:56.004 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:37:56.004 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:37:56.004 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135632249544952. ----------
17-03-18 05:37:56.004 -07 000000610 INF: Cycle	139	Tile	14	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:37:56.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28133, sync = True, waitForSettling = True)
17-03-18 05:37:56.014 -07 000000610 INF: Z Motor: Moving to -0.128785 mm, started at -0.135632 mm, distance = 6.85 um
17-03-18 05:37:56.014 -07 000000610 INF: FPGA: Xmit ZDACW 28133\n [Z Motor]
17-03-18 05:37:56.014 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 05:37:56.024 -07 000000610 INF: FPGA: 'ZDACW 28133' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:56.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:56.024 -07 000000585 INF: FPGA: Recv ZDACR 28133
17-03-18 05:37:56.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:37:56.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.184 -07 000000585 INF: FPGA: Recv ZSGSRD 29341
17-03-18 05:37:56.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.194 -07 000000585 INF: FPGA: Recv ZSGSRD 29336
17-03-18 05:37:56.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.204 -07 000000382 INF: FPGA: Recv ZSGSRD 29336
17-03-18 05:37:56.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.214 -07 000000382 INF: FPGA: Recv ZSGSRD 29334
17-03-18 05:37:56.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.224 -07 000000581 INF: FPGA: Recv ZSGSRD 29336
17-03-18 05:37:56.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.234 -07 000000581 INF: FPGA: Recv ZSGSRD 29335
17-03-18 05:37:56.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.244 -07 000000585 INF: FPGA: Recv ZSGSRD 29334
17-03-18 05:37:56.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29336
17-03-18 05:37:56.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.264 -07 000000581 INF: FPGA: Recv ZSGSRD 29338
17-03-18 05:37:56.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:56.274 -07 000000585 INF: FPGA: Recv ZSGSRD 29337
17-03-18 05:37:56.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:56.284 -07 000000585 INF: FPGA: Recv ZPIEZORD 24845
17-03-18 05:37:56.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:56.294 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.9 V.
17-03-18 05:37:56.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29336 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29336 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29334 (-128.0 uncal um), Max = 29341 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 05:37:56.294 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29336, posNoise = 5, negNoise = 2
17-03-18 05:37:56.294 -07 000000610 INF: Z Motor: After move to -0.128785, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:56.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:37:56.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:56.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:56.294 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:56.294 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:56.294 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:37:56.294 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:37:56.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:37:56.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:56.294 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:37:56.294 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:37:56.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:37:56.294 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:37:56.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:37:56.304 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:37:56.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:56.304 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:37:56.314 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:37:56.314 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:37:56.314 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:37:56.314 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:37:56.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28310 150\n [Camera]
17-03-18 05:37:56.514 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:37:56.784 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:37:56.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:37:56.954 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:37:56.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:37:56.954 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:56.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:37:56.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:37:56.954 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:56.964 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:56.964 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:37:56.964 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:56.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 05:37:57.144 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28310 827
17-03-18 05:37:57.294 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:37:57.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:37:57.364 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 05:37:57.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:57.364 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 05:37:57.364 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:37:57.364 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:57.374 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:57.374 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:57.374 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-18 05:37:57.384 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 05:37:57.514 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1192
17-03-18 05:37:57.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1192
17-03-18 05:37:57.514 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:37:57.514 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1192
17-03-18 05:37:57.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1192
17-03-18 05:37:57.514 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:37:57.644 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:37:57.644 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 05:37:57.644 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.988112,
17-03-18 05:37:57.644 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:37:57.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 05:37:57.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:37:57.704 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:37:57.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28310 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-18 05:37:57.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:37:57.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128784039401834. ------
17-03-18 05:37:57.704 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13547 mm
17-03-18 05:37:57.704 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:37:57.704 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:57.714 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 05:37:57.714 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 05:37:57.714 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:57.714 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29594, sync = True, waitForSettling = False)
17-03-18 05:37:57.714 -07 000000382 INF: Z Motor: Moving to -0.135473 mm, started at -0.128784 mm, distance = -6.69 um
17-03-18 05:37:57.714 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:57.714 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:37:57.714 -07 000000012 INF: FPGA: Recv YRDPOS 144769
17-03-18 05:37:57.724 -07 000000382 INF: FPGA: Xmit ZDACW 29594\n [Z Motor]
17-03-18 05:37:57.724 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:37:57.724 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:57.724 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:37:57.724 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-18 05:37:57.724 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 05:37:57.734 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:37:57.734 -07 000000382 INF: FPGA: 'ZDACW 29594' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:37:57.744 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:37:57.754 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:37:57.754 -07 000000012 INF: FPGA: Recv ZDACR 29594
17-03-18 05:37:57.764 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:37:57.764 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 05:37:57.934 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:37:57.934 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 05:37:58.034 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 05:37:58.034 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:37:58.034 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:58.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:37:58.044 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:37:58.044 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:58.044 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:58.044 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 05:37:58.044 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 05:37:58.054 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 05:37:58.114 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 05:37:58.114 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 05:37:58.164 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:58.174 -07 000000012 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:37:58.174 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:37:58.174 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:58.174 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 05:37:58.174 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.138 mm/sec
17-03-18 05:37:59.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:37:59.124 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:37:59.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:37:59.134 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:37:59.164 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:37:59.164 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:37:59.164 -07 000000512 INF: Y Motor: Moved to 71.5186 after 1449 ms (table move)
17-03-18 05:37:59.164 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135473 mm (DAC = 29594)
17-03-18 05:37:59.164 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.164 -07 000000625 INF: FPGA: Recv ZSGSRD 30387
17-03-18 05:37:59.174 -07 000000585 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:37:59.174 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.174 -07 000000012 INF: FPGA: Recv ZSGSRD 30380
17-03-18 05:37:59.184 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.184 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.184 -07 000000625 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:37:59.194 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.194 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.194 -07 000000480 INF: FPGA: Recv ZSGSRD 30377
17-03-18 05:37:59.204 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.204 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.204 -07 000000474 INF: FPGA: Recv ZSGSRD 30382
17-03-18 05:37:59.214 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.214 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.214 -07 000000512 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:37:59.224 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.224 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.224 -07 000000474 INF: FPGA: Recv ZSGSRD 30371
17-03-18 05:37:59.234 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.234 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.234 -07 000000512 INF: FPGA: Recv ZSGSRD 30381
17-03-18 05:37:59.244 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.244 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.244 -07 000000012 INF: FPGA: Recv ZSGSRD 30382
17-03-18 05:37:59.254 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.254 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:37:59.254 -07 000000382 INF: FPGA: Recv ZSGSRD 30382
17-03-18 05:37:59.264 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.264 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:37:59.264 -07 000000512 INF: FPGA: Recv ZPIEZORD 26234
17-03-18 05:37:59.274 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:37:59.274 -07 000000585 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.1 V.
17-03-18 05:37:59.274 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30380 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30381 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30371 (-134.6 uncal um), Max = 30387 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 05:37:59.274 -07 000000585 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30380, posNoise = 7, negNoise = 9
17-03-18 05:37:59.274 -07 000000585 INF: Z Motor: After move to -0.135473, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:37:59.274 -07 000000585 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 05:37:59.274 -07 000000585 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 05:37:59.324 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 05:37:59.324 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:37:59.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:37:59.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:37:59.324 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:37:59.334 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:37:59.334 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:37:59.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:37:59.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:37:59.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:37:59.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:37:59.334 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:37:59.344 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 05:37:59.344 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 05:37:59.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:37:59.394 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:37:59.684 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:37:59.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:37:59.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:37:59.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592345376, 0x0, 559484976) start.
17-03-18 05:37:59.724 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:37:59.724 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 05:37:59.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:37:59.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592345376, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:37:59.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:37:59.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:37:59.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:37:59.834 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:37:59.834 -07 000000480 INF: Autofocus start
17-03-18 05:37:59.834 -07 000000480 INF: MeasureProfile start
17-03-18 05:37:59.834 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:37:59.844 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:37:59.844 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:37:59.844 -07 000000480 INF: MeasureProfile done
17-03-18 05:37:59.844 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:37:59.844 -07 000000480 INF: Autofocus finished
17-03-18 05:38:00.044 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:38:00.044 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:38:00.044 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135490916877833. ----------
17-03-18 05:38:00.044 -07 000000610 INF: Cycle	139	Tile	15	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:38:00.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28118, sync = True, waitForSettling = True)
17-03-18 05:38:00.054 -07 000000610 INF: Z Motor: Moving to -0.128716 mm, started at -0.135491 mm, distance = 6.77 um
17-03-18 05:38:00.054 -07 000000610 INF: FPGA: Xmit ZDACW 28118\n [Z Motor]
17-03-18 05:38:00.054 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 05:38:00.064 -07 000000610 INF: FPGA: 'ZDACW 28118' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:38:00.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:00.064 -07 000000512 INF: FPGA: Recv ZDACR 28118
17-03-18 05:38:00.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:38:00.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.224 -07 000000585 INF: FPGA: Recv ZSGSRD 29322
17-03-18 05:38:00.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:38:00.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.234 -07 000000480 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:38:00.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.244 -07 000000474 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:38:00.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.254 -07 000000625 INF: FPGA: Recv ZSGSRD 29327
17-03-18 05:38:00.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.264 -07 000000585 INF: FPGA: Recv ZSGSRD 29324
17-03-18 05:38:00.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.274 -07 000000474 INF: FPGA: Recv ZSGSRD 29325
17-03-18 05:38:00.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.284 -07 000000585 INF: FPGA: Recv ZSGSRD 29330
17-03-18 05:38:00.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.294 -07 000000625 INF: FPGA: Recv ZSGSRD 29325
17-03-18 05:38:00.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.304 -07 000000012 INF: FPGA: Recv ZSGSRD 29330
17-03-18 05:38:00.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:00.314 -07 000000585 INF: FPGA: Recv ZSGSRD 29332
17-03-18 05:38:00.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:00.324 -07 000000474 INF: FPGA: Recv ZPIEZORD 24845
17-03-18 05:38:00.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:00.334 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.8 V.
17-03-18 05:38:00.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29327 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29327 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29322 (-127.9 uncal um), Max = 29332 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:38:00.334 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29327, posNoise = 5, negNoise = 5
17-03-18 05:38:00.334 -07 000000610 INF: Z Motor: After move to -0.128716, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:00.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:38:00.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:00.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:00.334 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:00.334 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:00.334 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:38:00.334 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:00.334 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:38:00.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:38:00.334 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:38:00.334 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:38:00.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:38:00.334 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:38:00.344 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:38:00.344 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:38:00.344 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:38:00.344 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:38:00.354 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 05:38:00.354 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 05:38:00.354 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 05:38:00.354 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 05:38:00.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28295 150\n [Camera]
17-03-18 05:38:00.564 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:38:01.004 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:38:01.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:38:01.004 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:01.004 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:01.004 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:38:01.004 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:38:01.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:38:01.004 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:01.004 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:01.004 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 05:38:01.194 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28295 827
17-03-18 05:38:01.344 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:38:01.384 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 05:38:01.384 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:38:01.384 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:01.394 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:01.394 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:38:01.394 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 05:38:01.394 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 05:38:01.394 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:01.394 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:01.404 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 05:38:01.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:38:01.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:38:01.564 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:01.564 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:01.564 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 05:38:01.564 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:38:01.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:38:01.564 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:01.564 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:01.564 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 05:38:01.754 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:38:01.754 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:38:01.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28295 150' command took 2 ms to send, 1382 ms to get response, and 1392 ms overall
17-03-18 05:38:01.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:38:01.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128726221492559. ------
17-03-18 05:38:01.754 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:01.754 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13509 mm
17-03-18 05:38:01.754 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:38:01.874 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:01.874 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:38:01.874 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 05:38:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:38:01.874 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29510, sync = True, waitForSettling = False)
17-03-18 05:38:01.874 -07 000000467 INF: Z Motor: Moving to -0.135088 mm, started at -0.128726 mm, distance = -6.36 um
17-03-18 05:38:01.874 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 05:38:01.874 -07 000000585 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 05:38:01.874 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:38:01.884 -07 000000467 INF: FPGA: Xmit ZDACW 29510\n [Z Motor]
17-03-18 05:38:01.884 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:38:01.894 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:01.894 -07 000000467 INF: FPGA: 'ZDACW 29510' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 05:38:01.894 -07 000000479 INF: FPGA: Recv YRDPOS 146470
17-03-18 05:38:01.904 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 05:38:01.904 -07 000000585 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:01.904 -07 000000585 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:38:01.904 -07 000000585 INF: Y Motor: Moving 1350 steps-29
17-03-18 05:38:01.904 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:01.904 -07 000000561 INF: FPGA: Recv ZDACR 29510
17-03-18 05:38:01.914 -07 000000467 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 05:38:01.914 -07 000000467 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 05:38:01.914 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:38:01.954 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 05:38:01.954 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:38:01.954 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:01.954 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 05:38:01.954 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 05:38:01.954 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:01.954 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:01.954 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 05:38:01.954 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 05:38:01.964 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 05:38:02.084 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:38:02.084 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 200 ms to get response, and 203 ms overall
17-03-18 05:38:02.284 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 05:38:02.284 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 05:38:02.334 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:02.344 -07 000000618 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:38:02.344 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 05:38:02.344 -07 000000585 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:02.344 -07 000000585 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 05:38:02.344 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-18 05:38:03.004 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.979922,
17-03-18 05:38:03.294 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:03.294 -07 000000447 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:38:03.304 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:38:03.304 -07 000000585 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:03.334 -07 000000585 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:38:03.334 -07 000000585 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:38:03.334 -07 000000585 INF: Y Motor: Moved to 72.3491 after 1456 ms (table move)
17-03-18 05:38:03.334 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135088 mm (DAC = 29510)
17-03-18 05:38:03.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.334 -07 000000467 INF: FPGA: Recv ZSGSRD 30319
17-03-18 05:38:03.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 05:38:03.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.344 -07 000000447 INF: FPGA: Recv ZSGSRD 30325
17-03-18 05:38:03.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.354 -07 000000382 INF: FPGA: Recv ZSGSRD 30316
17-03-18 05:38:03.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.364 -07 000000585 INF: FPGA: Recv ZSGSRD 30313
17-03-18 05:38:03.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.374 -07 000000447 INF: FPGA: Recv ZSGSRD 30318
17-03-18 05:38:03.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.384 -07 000000012 INF: FPGA: Recv ZSGSRD 30314
17-03-18 05:38:03.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.394 -07 000000618 INF: FPGA: Recv ZSGSRD 30320
17-03-18 05:38:03.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30317
17-03-18 05:38:03.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.414 -07 000000611 INF: FPGA: Recv ZSGSRD 30324
17-03-18 05:38:03.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:03.424 -07 000000611 INF: FPGA: Recv ZSGSRD 30320
17-03-18 05:38:03.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.434 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:03.434 -07 000000625 INF: FPGA: Recv ZPIEZORD 26124
17-03-18 05:38:03.444 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:03.444 -07 000000512 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -9.2 V.
17-03-18 05:38:03.444 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30319 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30318 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30313 (-134.3 uncal um), Max = 30325 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:38:03.444 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30319, posNoise = 6, negNoise = 6
17-03-18 05:38:03.444 -07 000000512 INF: Z Motor: After move to -0.135088, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:03.444 -07 000000512 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 05:38:03.444 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 05:38:03.494 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 05:38:03.494 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:38:03.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:03.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:03.494 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:03.494 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:03.494 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:38:03.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:03.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:38:03.494 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:38:03.504 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:38:03.504 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:38:03.514 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 05:38:03.514 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 05:38:03.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:38:03.554 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:38:03.854 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:38:03.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:38:03.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:38:03.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:38:03.894 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:38:03.894 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:38:03.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 05:38:03.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 05:38:03.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:03.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:38:03.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 05:38:03.994 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:03.994 -07 000000512 INF: Autofocus start
17-03-18 05:38:03.994 -07 000000512 INF: MeasureProfile start
17-03-18 05:38:03.994 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:04.004 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 05:38:04.004 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:38:04.004 -07 000000512 INF: MeasureProfile done
17-03-18 05:38:04.004 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 05:38:04.004 -07 000000512 INF: Autofocus finished
17-03-18 05:38:04.204 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:38:04.204 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:38:04.204 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135099039937185. ----------
17-03-18 05:38:04.204 -07 000000610 INF: Cycle	139	Tile	16	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:38:04.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28018, sync = True, waitForSettling = True)
17-03-18 05:38:04.214 -07 000000610 INF: Z Motor: Moving to -0.128258 mm, started at -0.135099 mm, distance = 6.84 um
17-03-18 05:38:04.214 -07 000000610 INF: FPGA: Xmit ZDACW 28018\n [Z Motor]
17-03-18 05:38:04.214 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:38:04.224 -07 000000610 INF: FPGA: 'ZDACW 28018' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:04.224 -07 000000625 INF: FPGA: Recv ZDACR 28018
17-03-18 05:38:04.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:38:04.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.384 -07 000000512 INF: FPGA: Recv ZSGSRD 29257
17-03-18 05:38:04.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.394 -07 000000480 INF: FPGA: Recv ZSGSRD 29254
17-03-18 05:38:04.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.404 -07 000000512 INF: FPGA: Recv ZSGSRD 29255
17-03-18 05:38:04.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.414 -07 000000012 INF: FPGA: Recv ZSGSRD 29255
17-03-18 05:38:04.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.424 -07 000000625 INF: FPGA: Recv ZSGSRD 29253
17-03-18 05:38:04.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.434 -07 000000012 INF: FPGA: Recv ZSGSRD 29253
17-03-18 05:38:04.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.444 -07 000000611 INF: FPGA: Recv ZSGSRD 29256
17-03-18 05:38:04.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.454 -07 000000480 INF: FPGA: Recv ZSGSRD 29258
17-03-18 05:38:04.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.464 -07 000000625 INF: FPGA: Recv ZSGSRD 29255
17-03-18 05:38:04.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:38:04.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:04.474 -07 000000480 INF: FPGA: Recv ZSGSRD 29250
17-03-18 05:38:04.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:04.484 -07 000000625 INF: FPGA: Recv ZPIEZORD 24722
17-03-18 05:38:04.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:04.494 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.275 V. Piezo Error = -9.9 V.
17-03-18 05:38:04.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29255 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29255 (-127.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29250 (-127.5 uncal um), Max = 29258 (-127.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 05:38:04.494 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29255, posNoise = 3, negNoise = 5
17-03-18 05:38:04.494 -07 000000610 INF: Z Motor: After move to -0.128258, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:04.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 05:38:04.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:04.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:04.494 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:04.494 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:04.494 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:38:04.494 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:04.494 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:38:04.494 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:38:04.494 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:38:04.494 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:38:04.494 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:38:04.494 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:38:04.494 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:38:04.494 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:38:04.504 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:38:04.504 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:38:04.504 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 05:38:04.504 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 05:38:04.504 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 05:38:04.504 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 05:38:04.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28194 150\n [Camera]
17-03-18 05:38:04.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 05:38:05.154 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:38:05.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:38:05.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:05.154 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:38:05.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:38:05.164 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:05.164 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:05.164 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:38:05.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:05.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:38:05.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28194 827
17-03-18 05:38:05.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:38:05.544 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 05:38:05.544 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 05:38:05.544 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:05.544 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:38:05.544 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:38:05.544 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:05.544 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:05.544 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 05:38:05.544 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:05.554 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:38:05.714 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:38:05.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:38:05.714 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:05.714 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:05.714 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 05:38:05.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:38:05.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:38:05.714 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:05.714 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:05.714 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 05:38:05.904 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-18 05:38:05.904 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:38:05.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28194 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-18 05:38:05.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:38:05.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128263678218352. ------
17-03-18 05:38:05.914 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:05.914 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13487 mm
17-03-18 05:38:05.914 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:38:05.914 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:05.914 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29462, sync = True, waitForSettling = False)
17-03-18 05:38:05.914 -07 000000480 INF: Z Motor: Moving to -0.134868 mm, started at -0.128264 mm, distance = -6.60 um
17-03-18 05:38:05.914 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 05:38:05.914 -07 000000012 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 05:38:05.924 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:05.924 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:05.924 -07 000000581 INF: FPGA: Recv YRDPOS 148171
17-03-18 05:38:05.934 -07 000000480 INF: FPGA: Xmit ZDACW 29462\n [Z Motor]
17-03-18 05:38:05.934 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 05:38:05.934 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:05.934 -07 000000012 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:38:05.934 -07 000000012 INF: Y Motor: Moving 1350 steps-28
17-03-18 05:38:05.934 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:38:05.944 -07 000000480 INF: FPGA: 'ZDACW 29462' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 05:38:05.944 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:38:05.954 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:38:05.964 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:05.964 -07 000000461 INF: FPGA: Recv ZDACR 29462
17-03-18 05:38:05.974 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:38:05.974 -07 000000480 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 05:38:06.104 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 05:38:06.114 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 05:38:06.114 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:06.114 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 05:38:06.114 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 05:38:06.114 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:06.114 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:06.114 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 05:38:06.114 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 05:38:06.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 05:38:06.144 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:38:06.144 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 05:38:06.324 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 05:38:06.324 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 05:38:06.384 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:06.384 -07 000000592 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:38:06.394 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:38:06.394 -07 000000012 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:06.394 -07 000000012 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 05:38:06.394 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 05:38:06.784 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:38:06.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:38:07.344 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:07.344 -07 000000480 INF: FPGA: Recv YRDPOS 149863
17-03-18 05:38:07.354 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:38:07.354 -07 000000012 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:07.384 -07 000000012 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:38:07.384 -07 000000012 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:38:07.384 -07 000000012 INF: Y Motor: Moved to 73.1753 after 1467 ms (table move)
17-03-18 05:38:07.384 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134868 mm (DAC = 29462)
17-03-18 05:38:07.384 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.384 -07 000000012 INF: FPGA: Recv ZSGSRD 30290
17-03-18 05:38:07.394 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:38:07.394 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.394 -07 000000012 INF: FPGA: Recv ZSGSRD 30277
17-03-18 05:38:07.404 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.404 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.404 -07 000000012 INF: FPGA: Recv ZSGSRD 30289
17-03-18 05:38:07.414 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.414 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.414 -07 000000012 INF: FPGA: Recv ZSGSRD 30287
17-03-18 05:38:07.424 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.424 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.424 -07 000000012 INF: FPGA: Recv ZSGSRD 30286
17-03-18 05:38:07.434 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.434 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.434 -07 000000592 INF: FPGA: Recv ZSGSRD 30289
17-03-18 05:38:07.444 -07 000000625 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.444 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.444 -07 000000592 INF: FPGA: Recv ZSGSRD 30285
17-03-18 05:38:07.454 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.454 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.454 -07 000000592 INF: FPGA: Recv ZSGSRD 30284
17-03-18 05:38:07.464 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.464 -07 000000626 INF: FPGA: Recv ZSGSRD 30276
17-03-18 05:38:07.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.474 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:07.474 -07 000000626 INF: FPGA: Recv ZSGSRD 30276
17-03-18 05:38:07.484 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.484 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:07.484 -07 000000626 INF: FPGA: Recv ZPIEZORD 26114
17-03-18 05:38:07.494 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:07.494 -07 000000625 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -9.2 V.
17-03-18 05:38:07.494 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30284 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30286 (-134.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30276 (-134.0 uncal um), Max = 30290 (-134.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 05:38:07.494 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30284, posNoise = 6, negNoise = 8
17-03-18 05:38:07.494 -07 000000625 INF: Z Motor: After move to -0.134868, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:07.494 -07 000000625 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 05:38:07.494 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 05:38:07.544 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 05:38:07.544 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:38:07.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:07.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:07.544 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:07.544 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:07.544 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:38:07.544 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:07.544 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:38:07.544 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:38:07.554 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:38:07.554 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:38:07.554 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:38:07.554 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 05:38:07.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:38:07.604 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:38:07.904 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:38:07.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:38:07.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:38:07.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) start.
17-03-18 05:38:07.944 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:38:07.944 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 05:38:07.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 05:38:08.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594551696, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 05:38:08.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:08.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:38:08.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 05:38:08.044 -07 000000626 INF: Autofocus start
17-03-18 05:38:08.044 -07 000000626 INF: MeasureProfile start
17-03-18 05:38:08.054 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:08.054 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:08.054 -07 000000626 INF: MeasureProfile done
17-03-18 05:38:08.054 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:38:08.054 -07 000000626 INF: Autofocus finished
17-03-18 05:38:08.064 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 05:38:08.064 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:38:08.264 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:38:08.264 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:38:08.264 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134874192512224. ----------
17-03-18 05:38:08.264 -07 000000610 INF: Cycle	139	Tile	17	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:38:08.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27957, sync = True, waitForSettling = True)
17-03-18 05:38:08.274 -07 000000610 INF: Z Motor: Moving to -0.127979 mm, started at -0.134874 mm, distance = 6.90 um
17-03-18 05:38:08.274 -07 000000610 INF: FPGA: Xmit ZDACW 27957\n [Z Motor]
17-03-18 05:38:08.274 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 05:38:08.284 -07 000000610 INF: FPGA: 'ZDACW 27957' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:38:08.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:08.284 -07 000000461 INF: FPGA: Recv ZDACR 27957
17-03-18 05:38:08.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:38:08.364 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 4.004458,
17-03-18 05:38:08.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.444 -07 000000512 INF: FPGA: Recv ZSGSRD 29211
17-03-18 05:38:08.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:38:08.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29214
17-03-18 05:38:08.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.464 -07 000000382 INF: FPGA: Recv ZSGSRD 29213
17-03-18 05:38:08.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.474 -07 000000480 INF: FPGA: Recv ZSGSRD 29206
17-03-18 05:38:08.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.484 -07 000000382 INF: FPGA: Recv ZSGSRD 29210
17-03-18 05:38:08.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.494 -07 000000512 INF: FPGA: Recv ZSGSRD 29211
17-03-18 05:38:08.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.504 -07 000000461 INF: FPGA: Recv ZSGSRD 29210
17-03-18 05:38:08.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.514 -07 000000480 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:38:08.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.524 -07 000000382 INF: FPGA: Recv ZSGSRD 29209
17-03-18 05:38:08.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:08.534 -07 000000382 INF: FPGA: Recv ZSGSRD 29212
17-03-18 05:38:08.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:08.544 -07 000000625 INF: FPGA: Recv ZPIEZORD 24693
17-03-18 05:38:08.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:08.554 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.9 V.
17-03-18 05:38:08.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29210 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29210 (-127.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29206 (-127.2 uncal um), Max = 29214 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 05:38:08.554 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29210, posNoise = 4, negNoise = 4
17-03-18 05:38:08.554 -07 000000610 INF: Z Motor: After move to -0.127979, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:08.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 05:38:08.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:08.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:08.554 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:38:08.554 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:08.554 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:08.554 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:08.554 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:38:08.554 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:38:08.554 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 05:38:08.554 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:38:08.554 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:38:08.554 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:38:08.564 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:38:08.564 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:38:08.564 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 05:38:08.564 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:38:08.584 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-18 05:38:08.584 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 27 ms.
17-03-18 05:38:08.584 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 19 ms.
17-03-18 05:38:08.584 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 05:38:08.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28134 150\n [Camera]
17-03-18 05:38:08.784 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:38:09.224 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:38:09.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:38:09.224 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:09.224 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:09.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 05:38:09.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:38:09.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:38:09.234 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:09.234 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:09.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 05:38:09.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28134 827
17-03-18 05:38:09.574 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-18 05:38:09.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 05:38:09.614 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 05:38:09.614 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:09.614 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 05:38:09.614 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 05:38:09.614 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:09.614 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:09.614 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 05:38:09.624 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:09.624 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:38:09.784 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:38:09.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:38:09.784 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:09.784 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:09.784 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 05:38:09.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:38:09.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:38:09.784 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:09.784 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:09.784 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 05:38:09.974 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:38:09.974 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:38:09.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28134 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-18 05:38:09.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:38:09.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127974588671973. ------
17-03-18 05:38:09.974 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:09.974 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13384 mm
17-03-18 05:38:09.974 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:38:09.984 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29237, sync = True, waitForSettling = False)
17-03-18 05:38:09.984 -07 000000512 INF: Z Motor: Moving to -0.133838 mm, started at -0.127975 mm, distance = -5.86 um
17-03-18 05:38:09.984 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 05:38:09.984 -07 000000625 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 05:38:09.984 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:09.984 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 05:38:09.984 -07 000000512 INF: FPGA: Xmit ZDACW 29237\n [Z Motor]
17-03-18 05:38:10.114 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:10.114 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 05:38:10.114 -07 000000512 INF: FPGA: 'ZDACW 29237' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-18 05:38:10.114 -07 000000585 INF: FPGA: Recv YRDPOS 149864
17-03-18 05:38:10.124 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 136 ms overall
17-03-18 05:38:10.124 -07 000000625 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:10.124 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:38:10.124 -07 000000625 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:38:10.124 -07 000000625 INF: Y Motor: Moving 1355 steps-35
17-03-18 05:38:10.134 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:10.134 -07 000000461 INF: FPGA: Recv ZDACR 29237
17-03-18 05:38:10.144 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 05:38:10.144 -07 000000512 INF: Z Motor: MoveAbsStepped took 157 ms (did NOT wait for settling yet))
17-03-18 05:38:10.144 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:38:10.194 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 05:38:10.194 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 05:38:10.194 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:10.194 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 05:38:10.194 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 05:38:10.194 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:10.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:10.194 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:38:10.194 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 05:38:10.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 05:38:10.324 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:38:10.324 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 339 ms overall
17-03-18 05:38:10.514 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 05:38:10.514 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 05:38:10.564 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:10.564 -07 000000461 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:38:10.574 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:10.574 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:10.574 -07 000000625 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 05:38:10.574 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.151 mm/sec
17-03-18 05:38:11.524 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:11.524 -07 000000479 INF: FPGA: Recv YRDPOS 151567
17-03-18 05:38:11.534 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.534 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:11.554 -07 000000625 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:38:11.554 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:38:11.554 -07 000000625 INF: Y Motor: Moved to 74.0073 after 1571 ms (table move)
17-03-18 05:38:11.554 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133838 mm (DAC = 29237)
17-03-18 05:38:11.554 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.564 -07 000000592 INF: FPGA: Recv ZSGSRD 30127
17-03-18 05:38:11.564 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:38:11.564 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.564 -07 000000625 INF: FPGA: Recv ZSGSRD 30131
17-03-18 05:38:11.574 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:38:11.574 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.574 -07 000000561 INF: FPGA: Recv ZSGSRD 30119
17-03-18 05:38:11.584 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.584 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.584 -07 000000474 INF: FPGA: Recv ZSGSRD 30119
17-03-18 05:38:11.594 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.594 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.594 -07 000000512 INF: FPGA: Recv ZSGSRD 30117
17-03-18 05:38:11.604 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.604 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.604 -07 000000474 INF: FPGA: Recv ZSGSRD 30116
17-03-18 05:38:11.614 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.614 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.614 -07 000000512 INF: FPGA: Recv ZSGSRD 30129
17-03-18 05:38:11.624 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.624 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.624 -07 000000474 INF: FPGA: Recv ZSGSRD 30122
17-03-18 05:38:11.634 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.634 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.634 -07 000000512 INF: FPGA: Recv ZSGSRD 30128
17-03-18 05:38:11.644 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.644 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:11.644 -07 000000474 INF: FPGA: Recv ZSGSRD 30125
17-03-18 05:38:11.654 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.654 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:11.654 -07 000000461 INF: FPGA: Recv ZPIEZORD 25902
17-03-18 05:38:11.664 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:11.664 -07 000000382 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.461 V. Piezo Error = -9.3 V.
17-03-18 05:38:11.664 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30123 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30124 (-133.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30116 (-133.0 uncal um), Max = 30131 (-133.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:38:11.664 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30123, posNoise = 8, negNoise = 7
17-03-18 05:38:11.664 -07 000000382 INF: Z Motor: After move to -0.133838, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:11.664 -07 000000382 INF: Z Motor: Settle wait time = 1576 ms, measure time = 102 ms (allowed 150 ms), total time = 1678 ms
17-03-18 05:38:11.664 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 05:38:11.714 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1730 ms
17-03-18 05:38:11.714 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:38:11.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:11.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:11.714 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:11.714 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:11.714 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:38:11.714 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:11.714 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:38:11.714 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:38:11.724 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 05:38:11.724 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:38:11.734 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 05:38:11.734 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 05:38:11.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:38:11.774 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:38:11.784 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:38:11.784 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:38:12.074 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:38:12.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:38:12.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:38:12.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:38:12.114 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:38:12.114 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 05:38:12.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 05:38:12.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:38:12.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:12.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:38:12.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:38:12.214 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:12.214 -07 000000480 INF: Autofocus start
17-03-18 05:38:12.214 -07 000000480 INF: MeasureProfile start
17-03-18 05:38:12.214 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:12.224 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 05:38:12.224 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:38:12.234 -07 000000480 INF: MeasureProfile done
17-03-18 05:38:12.234 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 05:38:12.234 -07 000000480 INF: Autofocus finished
17-03-18 05:38:12.424 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:38:12.424 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 05:38:12.424 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.1338398943574. ----------
17-03-18 05:38:12.434 -07 000000610 INF: Cycle	139	Tile	18	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:38:12.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27732, sync = True, waitForSettling = True)
17-03-18 05:38:12.434 -07 000000610 INF: Z Motor: Moving to -0.126949 mm, started at -0.133840 mm, distance = 6.89 um
17-03-18 05:38:12.434 -07 000000610 INF: FPGA: Xmit ZDACW 27732\n [Z Motor]
17-03-18 05:38:12.434 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 05:38:12.444 -07 000000610 INF: FPGA: 'ZDACW 27732' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 05:38:12.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:12.444 -07 000000618 INF: FPGA: Recv ZDACR 27732
17-03-18 05:38:12.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:38:12.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.604 -07 000000611 INF: FPGA: Recv ZSGSRD 29043
17-03-18 05:38:12.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:38:12.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.614 -07 000000474 INF: FPGA: Recv ZSGSRD 29050
17-03-18 05:38:12.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.624 -07 000000512 INF: FPGA: Recv ZSGSRD 29048
17-03-18 05:38:12.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.634 -07 000000501 INF: FPGA: Recv ZSGSRD 29048
17-03-18 05:38:12.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.644 -07 000000501 INF: FPGA: Recv ZSGSRD 29052
17-03-18 05:38:12.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.654 -07 000000581 INF: FPGA: Recv ZSGSRD 29049
17-03-18 05:38:12.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.664 -07 000000581 INF: FPGA: Recv ZSGSRD 29060
17-03-18 05:38:12.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.674 -07 000000581 INF: FPGA: Recv ZSGSRD 29050
17-03-18 05:38:12.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29051
17-03-18 05:38:12.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:12.694 -07 000000581 INF: FPGA: Recv ZSGSRD 29052
17-03-18 05:38:12.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:12.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 24510
17-03-18 05:38:12.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:12.714 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.232 V. Piezo Error = -10.0 V.
17-03-18 05:38:12.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29050 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29050 (-126.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29043 (-126.1 uncal um), Max = 29060 (-126.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:38:12.714 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29050, posNoise = 10, negNoise = 7
17-03-18 05:38:12.714 -07 000000610 INF: Z Motor: After move to -0.126949, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:12.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 05:38:12.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:12.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:12.714 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:38:12.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:12.714 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:12.714 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:12.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 05:38:12.714 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:38:12.714 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:38:12.714 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:38:12.724 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 05:38:12.724 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:38:12.724 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:38:12.724 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:38:12.724 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 05:38:12.724 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:38:12.734 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 05:38:12.734 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 05:38:12.734 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 05:38:12.734 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 05:38:12.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 27908 150\n [Camera]
17-03-18 05:38:12.934 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:38:13.374 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:38:13.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:38:13.374 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:13.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:38:13.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:38:13.384 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:13.384 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:13.384 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:38:13.384 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:13.384 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:38:13.764 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 05:38:13.764 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 05:38:13.764 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:13.764 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 05:38:13.764 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 05:38:13.764 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:13.764 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:38:13.764 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 05:38:13.764 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 05:38:13.774 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:38:13.784 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27908 827
17-03-18 05:38:13.784 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:38:13.934 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:38:13.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:38:13.934 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:13.934 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:13.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:38:13.934 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:38:13.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:38:13.934 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:13.934 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:13.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 05:38:14.314 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 05:38:14.324 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 05:38:14.324 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:14.324 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:14.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 05:38:14.324 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 05:38:14.324 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:14.334 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:14.334 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 05:38:14.334 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:38:14.344 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:38:14.344 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:38:14.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 27908 150' command took 2 ms to send, 1607 ms to get response, and 1613 ms overall
17-03-18 05:38:14.344 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.997626,
17-03-18 05:38:14.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 05:38:14.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.126946714729291. ------
17-03-18 05:38:14.464 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13338 mm
17-03-18 05:38:14.464 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 05:38:14.474 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:14.474 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 05:38:14.474 -07 000000608 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 05:38:14.474 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29136, sync = True, waitForSettling = False)
17-03-18 05:38:14.474 -07 000000585 INF: Z Motor: Moving to -0.133376 mm, started at -0.126947 mm, distance = -6.43 um
17-03-18 05:38:14.474 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:14.484 -07 000000585 INF: FPGA: Xmit ZDACW 29136\n [Z Motor]
17-03-18 05:38:14.484 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 05:38:14.484 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 05:38:14.494 -07 000000585 INF: FPGA: 'ZDACW 29136' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 05:38:14.504 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:14.504 -07 000000479 INF: FPGA: Recv YRDPOS 151568
17-03-18 05:38:14.514 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 05:38:14.514 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 05:38:14.514 -07 000000608 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:14.514 -07 000000608 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 05:38:14.514 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 05:38:14.524 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:14.524 -07 000000581 INF: FPGA: Recv ZDACR 29136
17-03-18 05:38:14.534 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 05:38:14.534 -07 000000585 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 05:38:14.544 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 05:38:14.714 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 05:38:14.714 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 234 ms overall
17-03-18 05:38:14.914 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 05:38:14.914 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-18 05:38:14.944 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:14.954 -07 000000581 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:38:14.954 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 05:38:14.954 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:14.954 -07 000000608 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 05:38:14.954 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.092 mm/sec
17-03-18 05:38:15.904 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 05:38:15.904 -07 000000479 INF: FPGA: Recv YRDPOS 153254
17-03-18 05:38:15.914 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:15.914 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 05:38:15.934 -07 000000608 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 05:38:15.934 -07 000000608 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 05:38:15.934 -07 000000608 INF: Y Motor: Moved to 74.8311 after 1459 ms (table move)
17-03-18 05:38:15.934 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133376 mm (DAC = 29136)
17-03-18 05:38:15.934 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.934 -07 000000382 INF: FPGA: Recv ZSGSRD 30055
17-03-18 05:38:15.944 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 05:38:15.944 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.944 -07 000000479 INF: FPGA: Recv ZSGSRD 30045
17-03-18 05:38:15.954 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:15.954 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.954 -07 000000479 INF: FPGA: Recv ZSGSRD 30049
17-03-18 05:38:15.964 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:15.964 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.964 -07 000000479 INF: FPGA: Recv ZSGSRD 30050
17-03-18 05:38:15.974 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:15.974 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.974 -07 000000608 INF: FPGA: Recv ZSGSRD 30056
17-03-18 05:38:15.984 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:15.984 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.984 -07 000000608 INF: FPGA: Recv ZSGSRD 30052
17-03-18 05:38:15.994 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:15.994 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:15.994 -07 000000625 INF: FPGA: Recv ZSGSRD 30053
17-03-18 05:38:16.004 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:16.004 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:16.004 -07 000000480 INF: FPGA: Recv ZSGSRD 30053
17-03-18 05:38:16.014 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:16.014 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:16.014 -07 000000626 INF: FPGA: Recv ZSGSRD 30056
17-03-18 05:38:16.024 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:16.024 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:16.024 -07 000000480 INF: FPGA: Recv ZSGSRD 30047
17-03-18 05:38:16.034 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:16.034 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:16.034 -07 000000561 INF: FPGA: Recv ZPIEZORD 25854
17-03-18 05:38:16.044 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:16.044 -07 000000611 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.2 V.
17-03-18 05:38:16.044 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30052 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30052 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30045 (-132.6 uncal um), Max = 30056 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 05:38:16.044 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30052, posNoise = 4, negNoise = 7
17-03-18 05:38:16.044 -07 000000611 INF: Z Motor: After move to -0.133376, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:16.044 -07 000000611 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 05:38:16.044 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 05:38:16.094 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 05:38:16.094 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 05:38:16.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:16.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:16.094 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:16.094 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:16.094 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 05:38:16.094 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:16.104 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:38:16.104 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 05:38:16.104 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 05:38:16.104 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 05:38:16.114 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 05:38:16.114 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 05:38:16.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 05:38:16.164 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 05:38:16.464 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 05:38:16.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 05:38:16.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 05:38:16.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) start.
17-03-18 05:38:16.494 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 05:38:16.504 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 05:38:16.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 05:38:16.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575470312, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 05:38:16.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:16.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 05:38:16.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 05:38:16.604 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 05:38:17.314 -07 000000618 INF: Autofocus start
17-03-18 05:38:17.314 -07 000000618 INF: MeasureProfile start
17-03-18 05:38:17.324 -07 000000618 INF: MeasureProfile done
17-03-18 05:38:17.324 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-18 05:38:17.324 -07 000000618 INF: Autofocus finished
17-03-18 05:38:17.324 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 05:38:17.324 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 05:38:17.324 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 717 ms to get response, and 723 ms overall
17-03-18 05:38:17.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 138. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1873, R2=1947, Total=3820. Warn if over 250 bubbles per interval.
17-03-18 05:38:17.324 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 05:38:17.534 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 05:38:17.534 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 203 ms overall
17-03-18 05:38:17.534 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133383775295335. ----------
17-03-18 05:38:17.534 -07 000000610 INF: Cycle	139	Tile	19	Exposure Settings		A	442	G	213	T	213	C	442
17-03-18 05:38:17.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27660, sync = True, waitForSettling = True)
17-03-18 05:38:17.534 -07 000000610 INF: Z Motor: Moving to -0.126619 mm, started at -0.133384 mm, distance = 6.76 um
17-03-18 05:38:17.534 -07 000000610 INF: FPGA: Xmit ZDACW 27660\n [Z Motor]
17-03-18 05:38:17.544 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 05:38:17.544 -07 000000610 INF: FPGA: 'ZDACW 27660' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 05:38:17.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 05:38:17.544 -07 000000618 INF: FPGA: Recv ZDACR 27660
17-03-18 05:38:17.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:38:17.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 05:38:17.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.704 -07 000000611 INF: FPGA: Recv ZSGSRD 29001
17-03-18 05:38:17.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 05:38:17.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.714 -07 000000618 INF: FPGA: Recv ZSGSRD 28992
17-03-18 05:38:17.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.724 -07 000000618 INF: FPGA: Recv ZSGSRD 28999
17-03-18 05:38:17.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 05:38:17.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.734 -07 000000611 INF: FPGA: Recv ZSGSRD 29000
17-03-18 05:38:17.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.744 -07 000000611 INF: FPGA: Recv ZSGSRD 29002
17-03-18 05:38:17.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.754 -07 000000611 INF: FPGA: Recv ZSGSRD 28999
17-03-18 05:38:17.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.764 -07 000000618 INF: FPGA: Recv ZSGSRD 29001
17-03-18 05:38:17.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.774 -07 000000611 INF: FPGA: Recv ZSGSRD 28993
17-03-18 05:38:17.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.784 -07 000000611 INF: FPGA: Recv ZSGSRD 28999
17-03-18 05:38:17.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 05:38:17.794 -07 000000611 INF: FPGA: Recv ZSGSRD 28999
17-03-18 05:38:17.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 05:38:17.804 -07 000000618 INF: FPGA: Recv ZPIEZORD 24442
17-03-18 05:38:17.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 05:38:17.814 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.221 V. Piezo Error = -10.0 V.
17-03-18 05:38:17.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28998 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28999 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28992 (-125.8 uncal um), Max = 29002 (-125.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 05:38:17.814 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28998, posNoise = 4, negNoise = 6
17-03-18 05:38:17.814 -07 000000610 INF: Z Motor: After move to -0.126619, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 05:38:17.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 05:38:17.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 05:38:17.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 05:38:17.814 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 05:38:17.814 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 05:38:17.814 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 05:38:17.814 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 05:38:17.814 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 05:38:17.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 05:38:17.814 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 05:38:17.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 05:38:17.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 05:38:17.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 05:38:17.824 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 05:38:17.824 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 05:38:17.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 05:38:17.824 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 05:38:17.834 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 05:38:17.834 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:38:17.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 05:38:17.834 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 05:38:17.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 27837 150\n [Camera]
17-03-18 05:38:18.044 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 05:38:18.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-18 05:38:18.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-18 05:38:18.484 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:18.484 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-18 05:38:18.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-18 05:38:18.484 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:18.494 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:18.494 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 05:38:18.494 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:18.494 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 05:38:18.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27837 827
17-03-18 05:38:18.824 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-18 05:38:18.884 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 05:38:18.884 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 05:38:18.884 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:18.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 05:38:18.894 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 05:38:18.894 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:18.894 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:18.894 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 05:38:18.894 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:18.904 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 05:38:19.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-18 05:38:19.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-18 05:38:19.044 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 05:38:19.044 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 05:38:19.044 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 05:38:19.044 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-18 05:38:19.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-18 05:38:19.044 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 05:38:19.044 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 05:38:19.044 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 05:38:19.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-18 05:38:19.234 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 05:38:19.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 27837 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-18 05:38:19.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 05:38:19.444 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 05:38:19.444 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:19.444 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 05:38:19.444 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 05:38:19.444 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 05:38:19.444 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 05:38:19.454 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 05:38:19.454 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 05:38:19.454 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 05:38:19.454 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 05:38:19.494 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 05:38:19.494 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 05:38:19.534 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 05:38:19.564 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 05:38:19.564 -07 000000610 INF: Imaging Cycle 139: ScanTilesCommand Cycle 139 time end. Duration was 173932 ms.
17-03-18 05:38:19.564 -07 000000610 INF: =================== Cycle #139 ===================
17-03-18 05:38:19.564 -07 000000610 INF: ===================  ===================
17-03-18 05:38:19.564 -07 000000611 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 05:38:19.574 -07 000000467 INF: FPGA: Recv EXLED1ADCR 22
17-03-18 05:38:19.574 -07 000000611 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 05:38:19.574 -07 000000611 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-18 05:38:19.574 -07 000000611 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 139, FrontChillerTemperature: 3.994908, FrontChillerHeatSinkTemperature: 0.463454, AmbientTemperature: 18.69405, FlowCellCompartmentTemperature: 21.97946, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.41565, GreenLEDSensorTemperature: 27.16733, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-18 05:38:19.684 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.