17-03-17 18:23:58.728 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:23:58.728 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:23:58.728 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 18:23:58.728 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:23:58.728 -07 000000561 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:23:58.738 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:23:58.738 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:23:58.738 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:23:58.738 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:23:58.738 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:23:58.848 -07 000000438 INF: FPGA: Recv YMVTO 154378 877
17-03-17 18:23:58.858 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 121 ms overall
17-03-17 18:23:58.858 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 18:23:58.858 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 877 steps (0.548 mm). Slippage = 0.001 mm (0.00%).
17-03-17 18:23:58.858 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 121 ms, distance = 0.548 mm, average velocity = 4.525 mm/sec
17-03-17 18:24:01.588 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:24:01.858 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:24:01.858 -07 000000480 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:24:01.868 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:24:01.868 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:24:01.878 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:24:01.878 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-17 18:24:01.878 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3151 ms
17-03-17 18:24:01.888 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 60° ===================
17-03-17 18:24:01.888 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:24:01.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:24:01.888 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:24:01.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:24:01.898 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:24:01.898 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-17 18:24:01.908 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:24:01.908 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 60° ===================
17-03-17 18:24:01.908 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:01.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:24:01.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:01.938 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:24:01.938 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:24:01.938 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:24:02.238 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:24:02.258 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:24:02.258 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:24:02.258 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.952638,
17-03-17 18:24:02.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:02.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:24:02.328 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:24:02.428 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:02.428 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:24:02.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:02.458 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:24:02.458 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:24:02.458 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:24:02.588 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:24:02.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:05.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:05.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:06.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:06.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:06.588 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:06.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=111, R2=118, Total=229. Warn if over 250 bubbles per interval.
17-03-17 18:24:06.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:06.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:06.688 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-17 18:24:06.688 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:06.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:06.848 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:24:06.848 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:24:06.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:07.008 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:24:07.008 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:24:07.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:24:07.138 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:24:07.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:07.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:07.618 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.99219,
17-03-17 18:24:07.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:07.628 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:24:07.628 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:08.848 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:24:08.848 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:24:08.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:08.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:24:08.868 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:24:08.868 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:24:08.998 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:24:09.018 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:24:09.018 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:24:09.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:09.088 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:24:09.088 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:24:09.188 -07 000000610 INF: =================== Cycle #13, Pumping Reagent CMS (4) ===================
17-03-17 18:24:09.188 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:24:09.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:09.218 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:24:09.218 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:24:09.218 -07 000000610 INF: =================== Cycle #13, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:24:09.348 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:24:09.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:10.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:10.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:11.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:11.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:11.308 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:24:11.308 -07 000000610 INF: =================== Cycle #13, Pumping Reagent CMS (4) ===================
17-03-17 18:24:11.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:11.468 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:24:11.468 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:24:11.588 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 18:24:11.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=112, R2=119, Total=231. Warn if over 250 bubbles per interval.
17-03-17 18:24:11.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:11.628 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:24:11.628 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:24:11.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:24:11.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:24:11.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:12.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:12.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:12.248 -07 000000610 INF: LanePump: Waited 461 ms for pump motion to complete
17-03-17 18:24:12.248 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:12.978 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.007176,
17-03-17 18:24:13.468 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:24:13.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:24:13.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:13.488 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:24:13.488 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:24:13.488 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:24:13.638 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:24:13.658 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:24:13.658 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:24:13.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:13.728 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:24:13.728 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:24:13.828 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:13.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:24:13.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:13.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:24:13.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:24:13.858 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:24:13.988 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:24:14.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:14.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:14.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:14.928 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:24:14.928 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:15.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:15.088 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:24:15.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:24:15.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:15.248 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:24:15.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:24:15.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:24:15.378 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:24:15.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:15.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:15.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:15.868 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:24:15.868 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:15.868 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:24:15.868 -07 000000462 INF: WaitCommand(10000) start
17-03-17 18:24:15.868 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:24:16.588 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:16.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=112, R2=119, Total=231. Warn if over 250 bubbles per interval.
17-03-17 18:24:17.088 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:24:17.088 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 18:24:17.118 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:24:17.118 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:24:17.248 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:24:17.288 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:18.338 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.015368,
17-03-17 18:24:18.818 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:18.848 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:19.268 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:19.298 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:19.298 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:24:19.298 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:24:19.298 -07 000000480 INF: ===================  ===================
17-03-17 18:24:21.588 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=112, R2=119, Total=231. Warn if over 250 bubbles per interval.
17-03-17 18:24:23.698 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.986717,
17-03-17 18:24:25.878 -07 000000462 INF: WaitCommand(10000) end
17-03-17 18:24:25.878 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:25.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:24:25.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:25.918 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:24:25.918 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:24:25.918 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:24:26.048 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:24:26.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:26.588 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:26.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=112, R2=119, Total=231. Warn if over 250 bubbles per interval.
17-03-17 18:24:29.058 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.014009,
17-03-17 18:24:31.588 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 18:24:31.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=113, R2=120, Total=233. Warn if over 250 bubbles per interval.
17-03-17 18:24:32.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:32.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:32.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:32.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:33.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:33.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:33.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:33.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:34.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:34.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:34.048 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:24:34.048 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:34.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:34.208 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:24:34.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:24:34.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:34.368 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:24:34.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:24:34.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:24:34.418 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.997626,
17-03-17 18:24:34.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:24:34.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:34.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:34.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:34.988 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:24:34.988 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:36.208 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:24:36.208 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:24:36.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:36.228 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:24:36.228 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:24:36.228 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:24:36.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:24:36.458 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:24:36.458 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:24:36.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:36.528 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:24:36.528 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:24:36.588 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:36.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=113, R2=120, Total=233. Warn if over 250 bubbles per interval.
17-03-17 18:24:36.628 -07 000000610 INF: =================== Cycle #13, Pumping Reagent IMT (1) ===================
17-03-17 18:24:36.628 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:24:36.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:36.658 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:24:36.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:24:36.658 -07 000000610 INF: =================== Cycle #13, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:24:36.788 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:24:36.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:38.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:38.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:38.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:38.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:38.748 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:24:38.748 -07 000000610 INF: =================== Cycle #13, Pumping Reagent IMT (1) ===================
17-03-17 18:24:38.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:38.908 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:24:38.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:24:39.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:39.068 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:24:39.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:24:39.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:24:39.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:24:39.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:39.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:39.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:39.688 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:24:39.688 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:39.778 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.981281,
17-03-17 18:24:40.908 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:24:40.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:24:40.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:40.928 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:24:40.928 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:24:40.928 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:24:41.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:24:41.178 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:24:41.178 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:24:41.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:24:41.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:24:41.248 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:24:41.348 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:41.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:24:41.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:41.378 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:24:41.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:24:41.378 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:24:41.508 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:24:41.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:24:41.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:41.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=113, R2=120, Total=233. Warn if over 250 bubbles per interval.
17-03-17 18:24:42.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:42.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:42.448 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:24:42.448 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:24:42.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:42.608 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:24:42.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:24:42.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:24:42.768 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:24:42.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:24:42.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:24:42.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:24:42.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:43.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:24:43.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:24:43.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:24:43.388 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:43.388 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 65° ===================
17-03-17 18:24:43.388 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:24:43.388 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:24:43.398 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:24:43.398 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:24:43.398 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:24:43.398 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-17 18:24:43.408 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:24:43.408 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 65° ===================
17-03-17 18:24:43.408 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:24:43.408 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:24:45.138 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.979922,
17-03-17 18:24:46.588 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:24:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=113, R2=120, Total=233. Warn if over 250 bubbles per interval.
17-03-17 18:24:50.498 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.008536,
17-03-17 18:24:51.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:24:51.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=120, Total=234. Warn if over 250 bubbles per interval.
17-03-17 18:24:55.858 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.003063,
17-03-17 18:24:56.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:24:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=121, Total=235. Warn if over 250 bubbles per interval.
17-03-17 18:25:01.218 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.018051,
17-03-17 18:25:01.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:25:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:06.578 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.003063,
17-03-17 18:25:06.588 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:06.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:11.588 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:11.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:11.938 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.990831,
17-03-17 18:25:13.418 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:25:13.418 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:25:13.418 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:25:13.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:13.548 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:25:13.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:25:13.548 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:25:13.678 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:25:13.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:14.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:14.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:14.288 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:25:14.288 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:25:14.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:14.448 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:25:14.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:25:14.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:14.608 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:25:14.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:25:14.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:25:14.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:25:14.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:15.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:15.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:15.228 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:25:15.228 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:25:15.228 -07 000000462 INF: WaitCommand(30000) start
17-03-17 18:25:15.228 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:25:15.228 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:25:16.448 -07 000000623 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:25:16.448 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 18:25:16.478 -07 000000623 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:25:16.478 -07 000000623 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:25:16.588 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:16.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:16.608 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:25:16.648 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:17.298 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.983999,
17-03-17 18:25:18.988 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:19.018 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:19.438 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:19.468 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:19.468 -07 000000623 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:25:19.468 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:25:19.468 -07 000000623 INF: ===================  ===================
17-03-17 18:25:21.588 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:22.658 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.970374,
17-03-17 18:25:26.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:26.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:28.018 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.001704,
17-03-17 18:25:31.588 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:31.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:33.378 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.027603,
17-03-17 18:25:36.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:36.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:38.738 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.009895,
17-03-17 18:25:41.588 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:41.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:44.098 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.012614,
17-03-17 18:25:45.238 -07 000000462 INF: WaitCommand(30000) end
17-03-17 18:25:45.248 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 22° ===================
17-03-17 18:25:45.248 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:25:45.248 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:25:45.248 -07 000000623 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:25:45.258 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:25:45.258 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:25:45.258 -07 000000593 INF: FPGA: Recv TEC2EN 
17-03-17 18:25:45.268 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:25:45.268 -07 000000610 INF: =================== Cycle #13, Flow Cell Temp 22° ===================
17-03-17 18:25:45.268 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:25:45.278 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:25:45.278 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:25:45.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:45.308 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:25:45.308 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:25:45.308 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:25:45.438 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:25:45.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:46.588 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=114, R2=122, Total=236. Warn if over 250 bubbles per interval.
17-03-17 18:25:48.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:48.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:49.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:49.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:49.458 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.997626,
17-03-17 18:25:49.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:49.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:49.538 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:25:49.538 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:25:49.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:49.698 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:25:49.698 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:25:49.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:49.858 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:25:49.858 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:25:49.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:25:49.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:25:50.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:50.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:50.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:50.478 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:25:50.478 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:25:51.588 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-17 18:25:51.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=119, R2=126, Total=245. Warn if over 250 bubbles per interval.
17-03-17 18:25:51.698 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:25:51.698 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:25:51.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:25:51.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:25:51.718 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:25:51.718 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:25:51.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:25:51.888 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:25:51.888 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:25:51.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:25:51.958 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:25:51.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:25:52.058 -07 000000610 INF: =================== Cycle #13, Pumping Reagent USM (2) ===================
17-03-17 18:25:52.058 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:25:52.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:52.088 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:25:52.088 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:25:52.088 -07 000000610 INF: =================== Cycle #13, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:25:52.218 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:25:52.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:53.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:53.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:54.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:54.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:54.178 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:25:54.178 -07 000000610 INF: =================== Cycle #13, Pumping Reagent USM (2) ===================
17-03-17 18:25:54.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:54.338 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:25:54.338 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:25:54.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:54.498 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:25:54.498 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:25:54.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:25:54.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:25:54.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:54.818 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.019446,
17-03-17 18:25:55.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:55.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:55.118 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:25:55.118 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:25:56.338 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:25:56.338 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:25:56.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:25:56.358 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:25:56.358 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:25:56.358 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:25:56.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:25:56.528 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:25:56.528 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:25:56.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:25:56.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:25:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=119, R2=126, Total=245. Warn if over 250 bubbles per interval.
17-03-17 18:25:56.598 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:25:56.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:25:56.698 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:25:56.698 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:25:56.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:56.728 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:25:56.728 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:25:56.728 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:25:56.858 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:25:56.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:25:57.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:57.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:57.798 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:25:57.798 -07 000000610 INF: =================== Cycle #13, Pumping Reagent PR2 (3) ===================
17-03-17 18:25:57.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:57.958 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:25:57.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:25:58.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:25:58.118 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:25:58.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:25:58.118 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:25:58.248 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:25:58.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:58.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:25:58.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:25:58.738 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:25:58.738 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:25:58.738 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:25:58.738 -07 000000462 INF: WaitCommand(10000) start
17-03-17 18:25:58.738 -07 000000593 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:25:59.958 -07 000000593 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:25:59.958 -07 000000593 INF: LanePump: Xmit /1?\r
17-03-17 18:25:59.988 -07 000000593 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:25:59.988 -07 000000593 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:26:00.118 -07 000000593 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:26:00.158 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:26:00.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.012614,
17-03-17 18:26:01.588 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 18:26:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=126, Total=248. Warn if over 250 bubbles per interval.
17-03-17 18:26:01.688 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 18:26:01.718 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:26:02.138 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 18:26:02.168 -07 000000593 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:26:02.168 -07 000000593 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:26:02.168 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:26:02.168 -07 000000593 INF: ===================  ===================
17-03-17 18:26:05.538 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.98264,
17-03-17 18:26:06.598 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:26:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=128, Total=250. Warn if over 250 bubbles per interval.
17-03-17 18:26:08.748 -07 000000462 INF: WaitCommand(10000) end
17-03-17 18:26:08.748 -07 000000610 INF: =================== Cycle #13, Imaging ===================
17-03-17 18:26:08.748 -07 000000610 INF: Imaging Cycle 13: ScanTilesCommand Cycle 13 time start.
17-03-17 18:26:08.748 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:26:08.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:26:08.778 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:26:08.778 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:26:08.778 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:26:09.078 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:26:09.098 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:26:09.098 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:26:09.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:26:09.168 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:26:09.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:09.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:09.168 -07 000000012 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:26:09.168 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:09.168 -07 000000012 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:26:09.168 -07 000000593 INF: FPGA: Recv EXLED1ON 
17-03-17 18:26:09.178 -07 000000012 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:26:09.178 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:26:09.178 -07 000000382 INF: FPGA: Recv EXLED1ADCR 23160
17-03-17 18:26:09.188 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:09.188 -07 000000012 INF: RedLED: Using Red data: Photodiode ADC 23160 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-17 18:26:09.188 -07 000000012 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:26:09.188 -07 000000429 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:26:09.198 -07 000000012 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:09.198 -07 000000012 INF: RedLED: LED was on for 19 ms
17-03-17 18:26:09.198 -07 000000012 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 18:26:09.198 -07 000000012 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:26:09.198 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:09.198 -07 000000012 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:26:09.198 -07 000000547 INF: FPGA: Recv EXLED2ON 
17-03-17 18:26:09.208 -07 000000012 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:09.208 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:26:09.208 -07 000000561 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 18:26:09.218 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:09.218 -07 000000012 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 18:26:09.218 -07 000000012 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:26:09.218 -07 000000593 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:26:09.228 -07 000000012 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:09.228 -07 000000012 INF: GreenLED: LED was on for 19 ms
17-03-17 18:26:09.228 -07 000000012 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:26:09.228 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:26:09.228 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 18:26:09.238 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:26:09.238 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:26:09.738 -07 000000012 INF: FPGA: Recv EMOUT
17-03-17 18:26:09.738 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:26:09.738 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:26:09.738 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 18:26:09.748 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:09.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:09.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.127248652699954. ------
17-03-17 18:26:09.748 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17925 mm
17-03-17 18:26:09.748 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:09.748 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:09.748 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:26:09.748 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 18:26:09.748 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39157, sync = True, waitForSettling = False)
17-03-17 18:26:09.748 -07 000000012 INF: Z Motor: Moving to -0.179249 mm, started at -0.127249 mm, distance = -52.00 um
17-03-17 18:26:09.758 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:09.758 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:09.758 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:09.758 -07 000000429 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:26:09.768 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:09.768 -07 000000547 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:09.768 -07 000000547 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:26:09.768 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:26:09.768 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:09.778 -07 000000012 INF: FPGA: Xmit ZDACW 39157\n [Z Motor]
17-03-17 18:26:09.778 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:26:09.788 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:26:09.788 -07 000000012 INF: FPGA: 'ZDACW 39157' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:09.798 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:09.798 -07 000000429 INF: FPGA: Recv ZDACR 39157
17-03-17 18:26:09.808 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:09.808 -07 000000012 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:26:09.968 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:09.968 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:26:10.898 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.985358,
17-03-17 18:26:11.468 -07 000000623 INF: FPGA: Recv YMVTO 122703 24782
17-03-17 18:26:11.468 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 18:26:11.468 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:26:11.468 -07 000000547 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-17 18:26:11.468 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.472 mm, average velocity = 9.074 mm/sec
17-03-17 18:26:11.598 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:26:11.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:14.318 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:14.318 -07 000000429 INF: FPGA: Recv YRDPOS 122698
17-03-17 18:26:14.328 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.328 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:14.348 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:14.348 -07 000000547 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 18:26:14.348 -07 000000547 INF: Y Motor: Moved to 59.9111 after 4594 ms
17-03-17 18:26:14.348 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179249 mm (DAC = 39157)
17-03-17 18:26:14.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.348 -07 000000561 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:26:14.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:26:14.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.358 -07 000000593 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:26:14.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.368 -07 000000623 INF: FPGA: Recv ZSGSRD 37189
17-03-17 18:26:14.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.378 -07 000000462 INF: FPGA: Recv ZSGSRD 37188
17-03-17 18:26:14.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.388 -07 000000593 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:26:14.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.398 -07 000000462 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:26:14.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.408 -07 000000623 INF: FPGA: Recv ZSGSRD 37188
17-03-17 18:26:14.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.418 -07 000000462 INF: FPGA: Recv ZSGSRD 37190
17-03-17 18:26:14.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.428 -07 000000012 INF: FPGA: Recv ZSGSRD 37187
17-03-17 18:26:14.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:14.438 -07 000000462 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:26:14.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.448 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:14.448 -07 000000593 INF: FPGA: Recv ZPIEZORD 33527
17-03-17 18:26:14.458 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:14.458 -07 000000382 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.975 V. Piezo Error = -8.1 V.
17-03-17 18:26:14.458 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37193 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37191 (-178.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37187 (-178.3 uncal um), Max = 37199 (-178.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:26:14.458 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37193, posNoise = 6, negNoise = 6
17-03-17 18:26:14.458 -07 000000382 INF: Z Motor: After move to -0.179249, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:14.458 -07 000000382 INF: Z Motor: Settle wait time = 4596 ms, measure time = 104 ms (allowed 150 ms), total time = 4700 ms
17-03-17 18:26:14.458 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:14.508 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 18:26:14.508 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:14.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:14.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:14.508 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:14.508 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:14.508 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:14.508 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:14.508 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:14.508 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:26:14.538 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 18:26:14.538 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:14.538 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:14.538 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:14.548 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:26:14.548 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-17 18:26:14.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:14.598 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:26:14.798 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:26:14.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:26:14.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:14.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) start.
17-03-17 18:26:14.838 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:14.838 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:14.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:26:14.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159662864, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:26:14.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:14.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:26:14.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:26:14.938 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:14.938 -07 000000462 INF: Image SNR check: start
17-03-17 18:26:14.938 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:14.948 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:14.948 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:14.948 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=77.96]
17-03-17 18:26:14.948 -07 000000462 INF: Autofocus start
17-03-17 18:26:14.948 -07 000000462 INF: MeasureProfile start
17-03-17 18:26:14.968 -07 000000462 INF: MeasureProfile done
17-03-17 18:26:14.968 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:26:14.968 -07 000000462 INF: Autofocus finished
17-03-17 18:26:15.148 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:15.148 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:15.148 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.17925907419965. ----------
17-03-17 18:26:15.148 -07 000000610 INF: Cycle	13	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:15.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37672, sync = True, waitForSettling = True)
17-03-17 18:26:15.158 -07 000000610 INF: Z Motor: Moving to -0.172451 mm, started at -0.179259 mm, distance = 6.81 um
17-03-17 18:26:15.158 -07 000000610 INF: FPGA: Xmit ZDACW 37672\n [Z Motor]
17-03-17 18:26:15.158 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:26:15.168 -07 000000610 INF: FPGA: 'ZDACW 37672' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:15.168 -07 000000593 INF: FPGA: Recv ZDACR 37672
17-03-17 18:26:15.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:15.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.328 -07 000000462 INF: FPGA: Recv ZSGSRD 36132
17-03-17 18:26:15.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:15.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36142
17-03-17 18:26:15.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.348 -07 000000502 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:26:15.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.358 -07 000000547 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:26:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.368 -07 000000593 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:26:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36137
17-03-17 18:26:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.388 -07 000000431 INF: FPGA: Recv ZSGSRD 36137
17-03-17 18:26:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:26:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.408 -07 000000626 INF: FPGA: Recv ZSGSRD 36130
17-03-17 18:26:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:15.418 -07 000000623 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:26:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:15.428 -07 000000431 INF: FPGA: Recv ZPIEZORD 32124
17-03-17 18:26:15.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:15.438 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.9 V.
17-03-17 18:26:15.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36136 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36136 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36130 (-171.5 uncal um), Max = 36142 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:26:15.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36136, posNoise = 6, negNoise = 6
17-03-17 18:26:15.438 -07 000000610 INF: Z Motor: After move to -0.172451, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:15.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:26:15.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:15.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:15.438 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:15.438 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:15.438 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:15.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:15.438 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:15.438 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:15.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:26:15.438 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:26:15.438 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:26:15.438 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:15.438 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:15.438 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:15.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:26:15.458 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:26:15.458 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 18:26:15.458 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:15.458 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:26:15.458 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:15.468 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:26:15.468 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 18:26:15.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37849 150\n [Camera]
17-03-17 18:26:15.668 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:16.068 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:16.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:16.068 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:16.068 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:16.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:26:16.068 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:16.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:16.068 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:16.068 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:16.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:26:16.258 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.99219,
17-03-17 18:26:16.258 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37849 778
17-03-17 18:26:16.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:16.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:26:16.458 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:26:16.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:16.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:26:16.458 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:26:16.458 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:16.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 11 ms.
17-03-17 18:26:16.468 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 11 ms.
17-03-17 18:26:16.468 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:26:16.478 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:26:16.588 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:16.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:16.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:16.598 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:16.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:16.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:16.708 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:16.708 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:16.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:26:16.718 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:16.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:26:16.788 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:26:16.788 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:16.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37849 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:26:16.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:16.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172468681965809. ------
17-03-17 18:26:16.798 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:16.798 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17864 mm
17-03-17 18:26:16.798 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:16.798 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:26:16.798 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 18:26:16.798 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 39024, sync = True, waitForSettling = False)
17-03-17 18:26:16.798 -07 000000482 INF: Z Motor: Moving to -0.178640 mm, started at -0.172469 mm, distance = -6.17 um
17-03-17 18:26:16.798 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:16.808 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:16.808 -07 000000482 INF: FPGA: Xmit ZDACW 39024\n [Z Motor]
17-03-17 18:26:16.808 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:26:16.818 -07 000000482 INF: FPGA: 'ZDACW 39024' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:26:16.818 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:16.818 -07 000000424 INF: FPGA: Recv YRDPOS 122698
17-03-17 18:26:16.828 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:16.828 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:26:16.828 -07 000000626 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:16.828 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:16.828 -07 000000626 INF: Y Motor: Moving 1330 steps2
17-03-17 18:26:16.838 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:16.838 -07 000000424 INF: FPGA: Recv ZDACR 39024
17-03-17 18:26:16.848 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:16.848 -07 000000482 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:26:16.848 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:17.028 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:17.028 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:17.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:26:17.108 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:26:17.108 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:17.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:26:17.108 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:26:17.108 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:17.118 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:17.118 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 18:26:17.118 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:17.128 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:26:17.218 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:26:17.218 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 18:26:17.248 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:17.248 -07 000000482 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:26:17.258 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:17.258 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:17.258 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 18:26:17.258 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.831 mm, average velocity = 2.100 mm/sec
17-03-17 18:26:18.208 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:18.208 -07 000000429 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:26:18.218 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:18.218 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:18.238 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:18.238 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:18.238 -07 000000626 INF: Y Motor: Moved to 60.7329 after 1436 ms (table move)
17-03-17 18:26:18.238 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178640 mm (DAC = 39024)
17-03-17 18:26:18.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.238 -07 000000462 INF: FPGA: Recv ZSGSRD 37096
17-03-17 18:26:18.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:26:18.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.248 -07 000000623 INF: FPGA: Recv ZSGSRD 37090
17-03-17 18:26:18.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.258 -07 000000462 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:26:18.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.268 -07 000000623 INF: FPGA: Recv ZSGSRD 37096
17-03-17 18:26:18.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.278 -07 000000626 INF: FPGA: Recv ZSGSRD 37098
17-03-17 18:26:18.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.288 -07 000000623 INF: FPGA: Recv ZSGSRD 37103
17-03-17 18:26:18.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.298 -07 000000482 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:26:18.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.308 -07 000000623 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:26:18.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.318 -07 000000429 INF: FPGA: Recv ZSGSRD 37095
17-03-17 18:26:18.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:18.328 -07 000000424 INF: FPGA: Recv ZSGSRD 37095
17-03-17 18:26:18.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.338 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:18.338 -07 000000429 INF: FPGA: Recv ZPIEZORD 33418
17-03-17 18:26:18.348 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:18.348 -07 000000618 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -8.2 V.
17-03-17 18:26:18.348 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37097 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37097 (-177.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37090 (-177.7 uncal um), Max = 37103 (-177.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:26:18.348 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37097, posNoise = 6, negNoise = 7
17-03-17 18:26:18.348 -07 000000618 INF: Z Motor: After move to -0.178640, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:18.348 -07 000000618 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:26:18.348 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:18.398 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:26:18.398 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:18.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:18.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:18.408 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:18.408 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:18.408 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:18.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:18.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:18.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:18.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:18.408 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:18.418 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:26:18.418 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:26:18.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:18.468 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:18.668 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:18.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:18.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:18.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1071943272, 0x0, 559484976) start.
17-03-17 18:26:18.708 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:18.708 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:18.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:26:18.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1071943272, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:26:18.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:18.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:18.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:26:18.808 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:18.808 -07 000000424 INF: Autofocus start
17-03-17 18:26:18.808 -07 000000424 INF: MeasureProfile start
17-03-17 18:26:18.808 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:18.818 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:18.818 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:18.818 -07 000000424 INF: MeasureProfile done
17-03-17 18:26:18.818 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:26:18.818 -07 000000424 INF: Autofocus finished
17-03-17 18:26:19.018 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:19.018 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:19.018 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178642349834041. ----------
17-03-17 18:26:19.018 -07 000000610 INF: Cycle	13	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:19.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37557, sync = True, waitForSettling = True)
17-03-17 18:26:19.028 -07 000000610 INF: Z Motor: Moving to -0.171925 mm, started at -0.178642 mm, distance = 6.72 um
17-03-17 18:26:19.028 -07 000000610 INF: FPGA: Xmit ZDACW 37557\n [Z Motor]
17-03-17 18:26:19.028 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:26:19.038 -07 000000610 INF: FPGA: 'ZDACW 37557' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:19.038 -07 000000482 INF: FPGA: Recv ZDACR 37557
17-03-17 18:26:19.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.198 -07 000000012 INF: FPGA: Recv ZSGSRD 36054
17-03-17 18:26:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.208 -07 000000626 INF: FPGA: Recv ZSGSRD 36054
17-03-17 18:26:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.218 -07 000000618 INF: FPGA: Recv ZSGSRD 36055
17-03-17 18:26:19.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36049
17-03-17 18:26:19.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36051
17-03-17 18:26:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.248 -07 000000626 INF: FPGA: Recv ZSGSRD 36058
17-03-17 18:26:19.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36053
17-03-17 18:26:19.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.268 -07 000000482 INF: FPGA: Recv ZSGSRD 36051
17-03-17 18:26:19.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36054
17-03-17 18:26:19.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:19.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36050
17-03-17 18:26:19.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:19.298 -07 000000623 INF: FPGA: Recv ZPIEZORD 31996
17-03-17 18:26:19.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:19.308 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.731 V. Piezo Error = -9.0 V.
17-03-17 18:26:19.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36053 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36054 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36049 (-171.0 uncal um), Max = 36058 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:26:19.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36053, posNoise = 5, negNoise = 4
17-03-17 18:26:19.308 -07 000000610 INF: Z Motor: After move to -0.171925, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:19.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:26:19.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:19.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:19.308 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:19.308 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:19.308 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:19.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:19.308 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:19.308 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:19.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:26:19.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:19.308 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:19.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:19.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:19.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:19.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:26:19.308 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:19.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:26:19.318 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:26:19.318 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:26:19.318 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:26:19.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37734 150\n [Camera]
17-03-17 18:26:19.528 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:26:19.918 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:19.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:19.918 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:19.918 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:19.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:19.928 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:20.038 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:20.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1091024656, 0x0, 391868352) start.
17-03-17 18:26:20.048 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:20.048 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:26:20.108 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37734 778
17-03-17 18:26:20.258 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:20.428 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1091024656, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:26:20.428 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:26:20.428 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:20.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:26:20.428 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:26:20.428 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:20.428 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:20.428 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 18:26:20.428 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:20.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 18:26:20.448 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:20.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:20.448 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:20.458 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:20.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:20.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:20.458 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:20.458 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:26:20.458 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:20.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:26:20.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:26:20.648 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:20.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37734 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:26:20.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:20.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171935472358043. ------
17-03-17 18:26:20.648 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:20.648 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17855 mm
17-03-17 18:26:20.648 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:20.648 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:20.658 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:20.658 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:20.658 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:26:20.658 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 18:26:20.658 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 39003, sync = True, waitForSettling = False)
17-03-17 18:26:20.658 -07 000000623 INF: Z Motor: Moving to -0.178544 mm, started at -0.171935 mm, distance = -6.61 um
17-03-17 18:26:20.668 -07 000000623 INF: FPGA: Xmit ZDACW 39003\n [Z Motor]
17-03-17 18:26:20.668 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:26:20.678 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:20.678 -07 000000623 INF: FPGA: 'ZDACW 39003' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:26:20.678 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:26:20.688 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:26:20.688 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:20.688 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:20.688 -07 000000431 INF: FPGA: Recv ZDACR 39003
17-03-17 18:26:20.688 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:20.688 -07 000000012 INF: Y Motor: Moving 1343 steps-20
17-03-17 18:26:20.698 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:20.698 -07 000000623 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:26:20.698 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:20.858 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:20.858 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:20.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:26:20.858 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:26:20.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:20.858 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:26:20.858 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:26:20.858 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:20.868 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:26:20.868 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:26:20.868 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 18:26:20.878 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:26:21.068 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:26:21.068 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:26:21.108 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:21.108 -07 000000547 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:26:21.118 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:21.118 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:21.118 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:26:21.118 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.187 mm/sec
17-03-17 18:26:21.588 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:21.618 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.988112,
17-03-17 18:26:22.068 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:22.068 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:26:22.078 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.078 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:22.098 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:22.098 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:22.098 -07 000000012 INF: Y Motor: Moved to 61.5640 after 1439 ms (table move)
17-03-17 18:26:22.098 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178544 mm (DAC = 39003)
17-03-17 18:26:22.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.098 -07 000000482 INF: FPGA: Recv ZSGSRD 37082
17-03-17 18:26:22.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:26:22.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.108 -07 000000618 INF: FPGA: Recv ZSGSRD 37075
17-03-17 18:26:22.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.118 -07 000000462 INF: FPGA: Recv ZSGSRD 37080
17-03-17 18:26:22.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.128 -07 000000561 INF: FPGA: Recv ZSGSRD 37077
17-03-17 18:26:22.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.138 -07 000000482 INF: FPGA: Recv ZSGSRD 37087
17-03-17 18:26:22.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.148 -07 000000547 INF: FPGA: Recv ZSGSRD 37090
17-03-17 18:26:22.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.158 -07 000000593 INF: FPGA: Recv ZSGSRD 37083
17-03-17 18:26:22.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.168 -07 000000012 INF: FPGA: Recv ZSGSRD 37083
17-03-17 18:26:22.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.178 -07 000000424 INF: FPGA: Recv ZSGSRD 37080
17-03-17 18:26:22.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:22.188 -07 000000561 INF: FPGA: Recv ZSGSRD 37077
17-03-17 18:26:22.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.198 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:22.198 -07 000000429 INF: FPGA: Recv ZPIEZORD 33422
17-03-17 18:26:22.208 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.208 -07 000000382 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.951 V. Piezo Error = -8.1 V.
17-03-17 18:26:22.208 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37081 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37081 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37075 (-177.6 uncal um), Max = 37090 (-177.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:26:22.208 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37081, posNoise = 9, negNoise = 6
17-03-17 18:26:22.208 -07 000000382 INF: Z Motor: After move to -0.178544, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:22.208 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:26:22.208 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:22.258 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 18:26:22.258 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:22.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:22.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:22.258 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:22.258 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:22.258 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:22.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:22.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:26:22.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:22.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:22.258 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:22.268 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:26:22.268 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:26:22.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:22.318 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:22.518 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:22.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:22.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:22.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 18:26:22.558 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:22.558 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:22.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:26:22.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:26:22.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:22.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:22.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:26:22.658 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:22.658 -07 000000502 INF: Autofocus start
17-03-17 18:26:22.658 -07 000000502 INF: MeasureProfile start
17-03-17 18:26:22.658 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:22.668 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:22.668 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:22.668 -07 000000502 INF: MeasureProfile done
17-03-17 18:26:22.668 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:26:22.668 -07 000000502 INF: Autofocus finished
17-03-17 18:26:22.868 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:22.868 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:26:22.868 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178539562439773. ----------
17-03-17 18:26:22.868 -07 000000610 INF: Cycle	13	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:22.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37536, sync = True, waitForSettling = True)
17-03-17 18:26:22.878 -07 000000610 INF: Z Motor: Moving to -0.171829 mm, started at -0.178540 mm, distance = 6.71 um
17-03-17 18:26:22.878 -07 000000610 INF: FPGA: Xmit ZDACW 37536\n [Z Motor]
17-03-17 18:26:22.878 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:26:22.888 -07 000000610 INF: FPGA: 'ZDACW 37536' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:22.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:22.888 -07 000000547 INF: FPGA: Recv ZDACR 37536
17-03-17 18:26:22.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:22.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.048 -07 000000382 INF: FPGA: Recv ZSGSRD 36042
17-03-17 18:26:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.058 -07 000000424 INF: FPGA: Recv ZSGSRD 36035
17-03-17 18:26:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.068 -07 000000429 INF: FPGA: Recv ZSGSRD 36037
17-03-17 18:26:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.078 -07 000000382 INF: FPGA: Recv ZSGSRD 36043
17-03-17 18:26:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36040
17-03-17 18:26:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.098 -07 000000438 INF: FPGA: Recv ZSGSRD 36030
17-03-17 18:26:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.108 -07 000000424 INF: FPGA: Recv ZSGSRD 36036
17-03-17 18:26:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.118 -07 000000429 INF: FPGA: Recv ZSGSRD 36041
17-03-17 18:26:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.128 -07 000000424 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:26:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:23.138 -07 000000429 INF: FPGA: Recv ZSGSRD 36031
17-03-17 18:26:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:23.148 -07 000000431 INF: FPGA: Recv ZPIEZORD 31946
17-03-17 18:26:23.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:23.158 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.0 V.
17-03-17 18:26:23.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36037 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36030 (-170.9 uncal um), Max = 36043 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:26:23.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36037, posNoise = 6, negNoise = 7
17-03-17 18:26:23.158 -07 000000610 INF: Z Motor: After move to -0.171829, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:23.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:26:23.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:23.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:23.158 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:23.158 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:23.158 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:23.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:23.158 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:23.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:23.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:23.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:23.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:23.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:23.168 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:23.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:23.168 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:26:23.168 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:23.178 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:26:23.178 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:26:23.178 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:26:23.178 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:26:23.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37713 150\n [Camera]
17-03-17 18:26:23.378 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:23.768 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:23.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:23.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:23.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:23.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:23.778 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:23.778 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:23.778 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:26:23.788 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:23.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:26:23.968 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37713 778
17-03-17 18:26:24.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:24.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:26:24.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:26:24.178 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:24.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:26:24.178 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:26:24.178 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:24.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:24.178 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:26:24.178 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:24.188 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:26:24.308 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:24.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:24.308 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:24.308 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:24.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:26:24.308 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:24.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:24.308 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:24.308 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:24.308 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1126446920, 0x0, 418435064) start.
17-03-17 18:26:24.498 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:26:24.498 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:24.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37713 150' command took 2 ms to send, 1315 ms to get response, and 1319 ms overall
17-03-17 18:26:24.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:24.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171832684963775. ------
17-03-17 18:26:24.508 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17796 mm
17-03-17 18:26:24.508 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:24.508 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:24.508 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:26:24.508 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 18:26:24.508 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38875, sync = True, waitForSettling = False)
17-03-17 18:26:24.508 -07 000000429 INF: Z Motor: Moving to -0.177958 mm, started at -0.171833 mm, distance = -6.13 um
17-03-17 18:26:24.508 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:24.518 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:24.518 -07 000000429 INF: FPGA: Xmit ZDACW 38875\n [Z Motor]
17-03-17 18:26:24.518 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:26:24.528 -07 000000429 INF: FPGA: 'ZDACW 38875' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:26:24.528 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:24.528 -07 000000382 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:26:24.538 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:24.538 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:26:24.538 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:24.538 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:24.538 -07 000000502 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:26:24.548 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:24.548 -07 000000382 INF: FPGA: Recv ZDACR 38875
17-03-17 18:26:24.558 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:24.558 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:24.558 -07 000000429 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:26:24.698 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1126446920, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:26:24.698 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:26:24.698 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:24.698 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:26:24.698 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:26:24.698 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:24.698 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:24.698 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:26:24.708 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:26:24.708 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:26:24.738 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:24.738 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:24.928 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:26:24.928 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:26:24.968 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:24.968 -07 000000424 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:26:24.978 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:24.978 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:24.978 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:26:24.978 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 18:26:25.928 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:25.928 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:26:25.938 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:25.938 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:25.958 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:25.958 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:25.958 -07 000000502 INF: Y Motor: Moved to 62.3955 after 1445 ms (table move)
17-03-17 18:26:25.958 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177958 mm (DAC = 38875)
17-03-17 18:26:25.958 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:25.958 -07 000000424 INF: FPGA: Recv ZSGSRD 36999
17-03-17 18:26:25.968 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:25.968 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:25.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:26:25.978 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:25.978 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:25.978 -07 000000618 INF: FPGA: Recv ZSGSRD 37001
17-03-17 18:26:25.988 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:25.988 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:25.988 -07 000000502 INF: FPGA: Recv ZSGSRD 36995
17-03-17 18:26:25.998 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:25.998 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:25.998 -07 000000424 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:26:26.008 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.008 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36989
17-03-17 18:26:26.018 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.018 -07 000000618 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:26:26.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.028 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.028 -07 000000623 INF: FPGA: Recv ZSGSRD 36996
17-03-17 18:26:26.038 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36986
17-03-17 18:26:26.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.048 -07 000000424 INF: FPGA: Recv ZSGSRD 36991
17-03-17 18:26:26.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.058 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:26.058 -07 000000623 INF: FPGA: Recv ZPIEZORD 33200
17-03-17 18:26:26.068 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.068 -07 000000561 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.4 V.
17-03-17 18:26:26.068 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36993 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36992 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36986 (-177.0 uncal um), Max = 37001 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:26:26.068 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36993, posNoise = 8, negNoise = 7
17-03-17 18:26:26.068 -07 000000561 INF: Z Motor: After move to -0.177958, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:26.068 -07 000000561 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:26:26.068 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:26.118 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:26:26.118 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:26.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:26.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:26.118 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:26.118 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:26.118 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:26.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:26.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:26.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:26.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:26.128 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:26.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:26:26.138 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:26:26.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:26.178 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:26.378 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:26.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:26.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:26.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:26:26.418 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:26.418 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:26.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:26:26.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:26:26.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:26.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:26.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:26:26.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:26.518 -07 000000431 INF: Autofocus start
17-03-17 18:26:26.518 -07 000000431 INF: MeasureProfile start
17-03-17 18:26:26.518 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:26.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:26.528 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:26.528 -07 000000431 INF: MeasureProfile done
17-03-17 18:26:26.528 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:26:26.528 -07 000000431 INF: Autofocus finished
17-03-17 18:26:26.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:26.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:26.728 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:26.728 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:26:26.728 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177974231771298. ----------
17-03-17 18:26:26.738 -07 000000610 INF: Cycle	13	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:26.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37390, sync = True, waitForSettling = True)
17-03-17 18:26:26.738 -07 000000610 INF: Z Motor: Moving to -0.171160 mm, started at -0.177974 mm, distance = 6.81 um
17-03-17 18:26:26.738 -07 000000610 INF: FPGA: Xmit ZDACW 37390\n [Z Motor]
17-03-17 18:26:26.738 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:26:26.748 -07 000000610 INF: FPGA: 'ZDACW 37390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:26.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:26.748 -07 000000429 INF: FPGA: Recv ZDACR 37390
17-03-17 18:26:26.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:26.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.908 -07 000000618 INF: FPGA: Recv ZSGSRD 35935
17-03-17 18:26:26.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.918 -07 000000561 INF: FPGA: Recv ZSGSRD 35933
17-03-17 18:26:26.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:26:26.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35932
17-03-17 18:26:26.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.948 -07 000000561 INF: FPGA: Recv ZSGSRD 35942
17-03-17 18:26:26.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.958 -07 000000382 INF: FPGA: Recv ZSGSRD 35932
17-03-17 18:26:26.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:26.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:26.978 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.042558,
17-03-17 18:26:26.978 -07 000000626 INF: FPGA: Recv ZSGSRD 35934
17-03-17 18:26:26.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:27.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:27.008 -07 000000480 INF: FPGA: Recv ZSGSRD 35932
17-03-17 18:26:27.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:27.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:27.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35935
17-03-17 18:26:27.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:26:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:27.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35929
17-03-17 18:26:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:27.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:27.058 -07 000000626 INF: FPGA: Recv ZPIEZORD 31795
17-03-17 18:26:27.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:27.068 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-17 18:26:27.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35934 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35929 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:26:27.068 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 8, negNoise = 5
17-03-17 18:26:27.068 -07 000000610 INF: Z Motor: After move to -0.171160, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:27.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 18:26:27.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:27.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:27.068 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:27.068 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:27.068 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:27.068 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:27.068 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:27.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:27.068 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:27.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:27.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:27.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:27.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:27.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:26:27.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:27.078 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:27.088 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:26:27.088 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:26:27.088 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:26:27.088 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:26:27.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37567 150\n [Camera]
17-03-17 18:26:27.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:27.688 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:27.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:27.688 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:27.688 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:27.688 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:26:27.688 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:27.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:27.688 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:27.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:27.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:26:27.878 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37567 778
17-03-17 18:26:28.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:26:28.078 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:26:28.078 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:26:28.078 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:28.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:26:28.078 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:26:28.078 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:28.078 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:28.088 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:26:28.088 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:28.088 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:26:28.218 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:28.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:28.218 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:28.218 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:28.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:26:28.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:28.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:28.218 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:28.218 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:28.218 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:26:28.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:26:28.528 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:28.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37567 150' command took 2 ms to send, 1420 ms to get response, and 1432 ms overall
17-03-17 18:26:28.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:28.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171170991113173. ------
17-03-17 18:26:28.528 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:28.528 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17787 mm
17-03-17 18:26:28.528 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:28.528 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:28.528 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:26:28.528 -07 000000429 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 18:26:28.538 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:26:28.538 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38855, sync = True, waitForSettling = False)
17-03-17 18:26:28.538 -07 000000438 INF: Z Motor: Moving to -0.177867 mm, started at -0.171171 mm, distance = -6.70 um
17-03-17 18:26:28.538 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:28.548 -07 000000438 INF: FPGA: Xmit ZDACW 38855\n [Z Motor]
17-03-17 18:26:28.548 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:26:28.558 -07 000000438 INF: FPGA: 'ZDACW 38855' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:28.558 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:28.558 -07 000000012 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:26:28.568 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:26:28.568 -07 000000429 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:28.568 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:28.568 -07 000000012 INF: FPGA: Recv ZDACR 38855
17-03-17 18:26:28.568 -07 000000429 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:28.568 -07 000000429 INF: Y Motor: Moving 1339 steps-15
17-03-17 18:26:28.578 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:28.578 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:26:28.578 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:28.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:26:28.608 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:26:28.608 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:28.608 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:26:28.608 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:26:28.608 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:28.618 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:28.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:26:28.618 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:26:28.618 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:26:28.738 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:28.738 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:28.948 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:26:28.948 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:26:28.988 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:28.988 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:26:28.998 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:28.998 -07 000000429 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:28.998 -07 000000429 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:26:28.998 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 18:26:29.948 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:29.948 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:26:29.958 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:29.958 -07 000000429 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:29.978 -07 000000429 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:29.978 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:29.978 -07 000000429 INF: Y Motor: Moved to 63.2241 after 1442 ms (table move)
17-03-17 18:26:29.978 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177867 mm (DAC = 38855)
17-03-17 18:26:29.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:29.978 -07 000000438 INF: FPGA: Recv ZSGSRD 36978
17-03-17 18:26:29.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:29.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:29.988 -07 000000429 INF: FPGA: Recv ZSGSRD 36971
17-03-17 18:26:29.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:29.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:29.998 -07 000000618 INF: FPGA: Recv ZSGSRD 36972
17-03-17 18:26:30.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.008 -07 000000438 INF: FPGA: Recv ZSGSRD 36974
17-03-17 18:26:30.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:30.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.018 -07 000000012 INF: FPGA: Recv ZSGSRD 36981
17-03-17 18:26:30.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.028 -07 000000618 INF: FPGA: Recv ZSGSRD 36970
17-03-17 18:26:30.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.038 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.038 -07 000000012 INF: FPGA: Recv ZSGSRD 36979
17-03-17 18:26:30.048 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.048 -07 000000415 INF: FPGA: Recv ZSGSRD 36982
17-03-17 18:26:30.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.058 -07 000000012 INF: FPGA: Recv ZSGSRD 36972
17-03-17 18:26:30.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.068 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.068 -07 000000415 INF: FPGA: Recv ZSGSRD 36976
17-03-17 18:26:30.078 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.078 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:30.078 -07 000000618 INF: FPGA: Recv ZPIEZORD 33228
17-03-17 18:26:30.088 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.088 -07 000000502 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.3 V.
17-03-17 18:26:30.088 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36975 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36970 (-176.9 uncal um), Max = 36982 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:26:30.088 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 6, negNoise = 6
17-03-17 18:26:30.088 -07 000000502 INF: Z Motor: After move to -0.177867, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:30.088 -07 000000502 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-17 18:26:30.088 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:30.138 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:26:30.138 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:30.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:30.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:30.138 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:30.138 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:30.138 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:30.138 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:30.138 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:30.138 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:30.148 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:30.148 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:30.148 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:26:30.148 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:26:30.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:30.198 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:30.398 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:30.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:30.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:30.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:26:30.438 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:30.438 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:30.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:26:30.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:26:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:30.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:26:30.538 -07 000000618 INF: Autofocus start
17-03-17 18:26:30.538 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:30.538 -07 000000618 INF: MeasureProfile start
17-03-17 18:26:30.538 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:30.548 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:30.548 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:30.548 -07 000000618 INF: MeasureProfile done
17-03-17 18:26:30.548 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:26:30.548 -07 000000618 INF: Autofocus finished
17-03-17 18:26:30.748 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:30.748 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:30.748 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177865020164888. ----------
17-03-17 18:26:30.748 -07 000000610 INF: Cycle	13	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:30.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37335, sync = True, waitForSettling = True)
17-03-17 18:26:30.758 -07 000000610 INF: Z Motor: Moving to -0.170909 mm, started at -0.177865 mm, distance = 6.96 um
17-03-17 18:26:30.758 -07 000000610 INF: FPGA: Xmit ZDACW 37335\n [Z Motor]
17-03-17 18:26:30.758 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:26:30.768 -07 000000610 INF: FPGA: 'ZDACW 37335' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:30.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:30.768 -07 000000618 INF: FPGA: Recv ZDACR 37335
17-03-17 18:26:30.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:30.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.928 -07 000000482 INF: FPGA: Recv ZSGSRD 35890
17-03-17 18:26:30.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.938 -07 000000482 INF: FPGA: Recv ZSGSRD 35899
17-03-17 18:26:30.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.948 -07 000000482 INF: FPGA: Recv ZSGSRD 35901
17-03-17 18:26:30.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.958 -07 000000482 INF: FPGA: Recv ZSGSRD 35894
17-03-17 18:26:30.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:30.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.968 -07 000000429 INF: FPGA: Recv ZSGSRD 35895
17-03-17 18:26:30.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.978 -07 000000438 INF: FPGA: Recv ZSGSRD 35895
17-03-17 18:26:30.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.988 -07 000000438 INF: FPGA: Recv ZSGSRD 35898
17-03-17 18:26:30.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:30.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:30.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35889
17-03-17 18:26:31.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:31.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:31.008 -07 000000438 INF: FPGA: Recv ZSGSRD 35890
17-03-17 18:26:31.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:31.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:31.018 -07 000000438 INF: FPGA: Recv ZSGSRD 35896
17-03-17 18:26:31.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:31.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:31.028 -07 000000438 INF: FPGA: Recv ZPIEZORD 31784
17-03-17 18:26:31.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:31.038 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -9.1 V.
17-03-17 18:26:31.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35895 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35895 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35889 (-170.0 uncal um), Max = 35901 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:26:31.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35895, posNoise = 6, negNoise = 6
17-03-17 18:26:31.038 -07 000000610 INF: Z Motor: After move to -0.170909, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:31.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:26:31.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:31.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:31.038 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:31.038 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:31.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:31.038 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:31.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:31.038 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:31.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:26:31.038 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:31.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:26:31.038 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:31.048 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:26:31.048 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:31.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:31.048 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:31.058 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:26:31.058 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:26:31.058 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:26:31.058 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:26:31.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37512 150\n [Camera]
17-03-17 18:26:31.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:31.588 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:31.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:31.658 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:31.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:31.658 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:31.658 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:31.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:31.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:31.658 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:31.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:26:31.668 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:31.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:26:31.848 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37512 778
17-03-17 18:26:31.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:26:32.058 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:26:32.058 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:26:32.058 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:32.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:26:32.058 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:26:32.058 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:32.058 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:32.058 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:26:32.058 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:32.068 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:26:32.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:32.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:32.188 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:32.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:32.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:32.188 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:32.308 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:32.308 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:26:32.308 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:32.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) start.
17-03-17 18:26:32.358 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.014009,
17-03-17 18:26:32.378 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:26:32.378 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:32.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37512 150' command took 2 ms to send, 1307 ms to get response, and 1318 ms overall
17-03-17 18:26:32.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:32.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170920446839645. ------
17-03-17 18:26:32.388 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17732 mm
17-03-17 18:26:32.388 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:32.388 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:26:32.388 -07 000000415 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 18:26:32.388 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38735, sync = True, waitForSettling = False)
17-03-17 18:26:32.388 -07 000000626 INF: Z Motor: Moving to -0.177317 mm, started at -0.170920 mm, distance = -6.40 um
17-03-17 18:26:32.398 -07 000000626 INF: FPGA: Xmit ZDACW 38735\n [Z Motor]
17-03-17 18:26:32.398 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:26:32.408 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:32.408 -07 000000626 INF: FPGA: 'ZDACW 38735' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:26:32.408 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:32.418 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:26:32.418 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:32.418 -07 000000438 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:26:32.428 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:32.428 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 18:26:32.428 -07 000000415 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:32.428 -07 000000438 INF: FPGA: Recv ZDACR 38735
17-03-17 18:26:32.428 -07 000000415 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:32.428 -07 000000415 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:26:32.438 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:32.438 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:32.438 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:26:32.448 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:32.638 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:32.638 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:32.688 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:26:32.688 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:26:32.688 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:32.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:26:32.688 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:26:32.688 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:32.688 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:32.688 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 18:26:32.688 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:32.698 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 18:26:32.818 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:26:32.818 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:26:32.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:32.858 -07 000000476 INF: FPGA: Recv YRDPOS 131188
17-03-17 18:26:32.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:32.868 -07 000000415 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:32.868 -07 000000415 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 18:26:32.868 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-17 18:26:33.818 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:33.818 -07 000000438 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:26:33.828 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.828 -07 000000415 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:33.838 -07 000000415 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:33.838 -07 000000415 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:26:33.838 -07 000000415 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move)
17-03-17 18:26:33.848 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177317 mm (DAC = 38735)
17-03-17 18:26:33.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36894
17-03-17 18:26:33.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:33.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.858 -07 000000618 INF: FPGA: Recv ZSGSRD 36886
17-03-17 18:26:33.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.868 -07 000000626 INF: FPGA: Recv ZSGSRD 36893
17-03-17 18:26:33.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.878 -07 000000618 INF: FPGA: Recv ZSGSRD 36894
17-03-17 18:26:33.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.888 -07 000000482 INF: FPGA: Recv ZSGSRD 36894
17-03-17 18:26:33.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.898 -07 000000438 INF: FPGA: Recv ZSGSRD 36882
17-03-17 18:26:33.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.908 -07 000000482 INF: FPGA: Recv ZSGSRD 36891
17-03-17 18:26:33.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.918 -07 000000438 INF: FPGA: Recv ZSGSRD 36890
17-03-17 18:26:33.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.928 -07 000000415 INF: FPGA: Recv ZSGSRD 36895
17-03-17 18:26:33.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:33.938 -07 000000415 INF: FPGA: Recv ZSGSRD 36888
17-03-17 18:26:33.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.948 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:33.948 -07 000000476 INF: FPGA: Recv ZPIEZORD 33121
17-03-17 18:26:33.958 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:33.958 -07 000000431 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.4 V.
17-03-17 18:26:33.958 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36891 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36892 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36882 (-176.4 uncal um), Max = 36895 (-176.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:26:33.958 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36891, posNoise = 4, negNoise = 9
17-03-17 18:26:33.958 -07 000000431 INF: Z Motor: After move to -0.177317, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:33.958 -07 000000431 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-17 18:26:33.958 -07 000000431 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:33.998 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:26:33.998 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:33.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:33.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:33.998 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:33.998 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:33.998 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:33.998 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:33.998 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:33.998 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:34.008 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:34.008 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:34.018 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:26:34.018 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:26:34.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:34.068 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:34.268 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:34.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:34.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:34.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:26:34.308 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:34.308 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:34.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:26:34.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:26:34.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:34.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:34.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:26:34.408 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:34.408 -07 000000431 INF: Autofocus start
17-03-17 18:26:34.408 -07 000000431 INF: MeasureProfile start
17-03-17 18:26:34.408 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:34.418 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:34.418 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:34.418 -07 000000431 INF: MeasureProfile done
17-03-17 18:26:34.418 -07 000000431 INF: X=-32  Z correction [um]=-0.2344
17-03-17 18:26:34.418 -07 000000431 INF: Autofocus finished
17-03-17 18:26:34.618 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:34.618 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:26:34.618 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177318962132838. ----------
17-03-17 18:26:34.618 -07 000000610 INF: Cycle	13	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:34.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37197, sync = True, waitForSettling = True)
17-03-17 18:26:34.628 -07 000000610 INF: Z Motor: Moving to -0.170277 mm, started at -0.177319 mm, distance = 7.04 um
17-03-17 18:26:34.628 -07 000000610 INF: FPGA: Xmit ZDACW 37197\n [Z Motor]
17-03-17 18:26:34.628 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:26:34.638 -07 000000610 INF: FPGA: 'ZDACW 37197' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:34.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:34.638 -07 000000438 INF: FPGA: Recv ZDACR 37197
17-03-17 18:26:34.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:34.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.798 -07 000000415 INF: FPGA: Recv ZSGSRD 35798
17-03-17 18:26:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:34.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35790
17-03-17 18:26:34.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.818 -07 000000476 INF: FPGA: Recv ZSGSRD 35797
17-03-17 18:26:34.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.828 -07 000000431 INF: FPGA: Recv ZSGSRD 35797
17-03-17 18:26:34.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.838 -07 000000618 INF: FPGA: Recv ZSGSRD 35803
17-03-17 18:26:34.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.848 -07 000000012 INF: FPGA: Recv ZSGSRD 35790
17-03-17 18:26:34.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.858 -07 000000415 INF: FPGA: Recv ZSGSRD 35796
17-03-17 18:26:34.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.868 -07 000000012 INF: FPGA: Recv ZSGSRD 35801
17-03-17 18:26:34.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35794
17-03-17 18:26:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:34.888 -07 000000431 INF: FPGA: Recv ZSGSRD 35796
17-03-17 18:26:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:34.898 -07 000000415 INF: FPGA: Recv ZPIEZORD 31669
17-03-17 18:26:34.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:34.908 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.1 V.
17-03-17 18:26:34.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35796 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35796 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35790 (-169.4 uncal um), Max = 35803 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:26:34.908 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35796, posNoise = 7, negNoise = 6
17-03-17 18:26:34.908 -07 000000610 INF: Z Motor: After move to -0.170277, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:34.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:26:34.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:34.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:34.908 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:34.908 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:34.908 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:34.908 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:34.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:34.908 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:34.908 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:34.908 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:34.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:34.908 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:34.908 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:34.918 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:34.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:26:34.918 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:34.918 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:26:34.918 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:26:34.928 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:26:34.928 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:26:34.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37373 150\n [Camera]
17-03-17 18:26:35.128 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:35.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:35.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:35.518 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:35.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:35.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:35.518 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:35.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:35.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1071943272, 0x0, 391868352) start.
17-03-17 18:26:35.528 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:35.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:26:35.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37373 778
17-03-17 18:26:35.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:35.908 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1071943272, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:26:35.908 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:26:35.908 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:35.908 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:26:35.908 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:26:35.908 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:35.908 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:35.908 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:26:35.908 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:26:35.918 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:26:36.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:36.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:36.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:36.058 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:36.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:36.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:36.058 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:36.058 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:26:36.058 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:36.058 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:26:36.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:26:36.238 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:36.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37373 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-17 18:26:36.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:36.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.17028444983761. ------
17-03-17 18:26:36.248 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:36.248 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17665 mm
17-03-17 18:26:36.248 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:36.248 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:26:36.248 -07 000000626 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 18:26:36.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38590, sync = True, waitForSettling = False)
17-03-17 18:26:36.248 -07 000000476 INF: Z Motor: Moving to -0.176654 mm, started at -0.170284 mm, distance = -6.37 um
17-03-17 18:26:36.248 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:36.258 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:36.258 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:36.258 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:26:36.268 -07 000000476 INF: FPGA: Xmit ZDACW 38590\n [Z Motor]
17-03-17 18:26:36.268 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:26:36.268 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:36.268 -07 000000626 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:36.268 -07 000000626 INF: Y Motor: Moving 1337 steps-12
17-03-17 18:26:36.268 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:26:36.278 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:36.278 -07 000000476 INF: FPGA: 'ZDACW 38590' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:26:36.288 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:36.298 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:36.298 -07 000000012 INF: FPGA: Recv ZDACR 38590
17-03-17 18:26:36.308 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:36.308 -07 000000476 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:26:36.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:26:36.448 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:26:36.448 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:36.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:26:36.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:26:36.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:36.448 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:36.448 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:26:36.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:36.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:26:36.478 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:36.478 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:36.588 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:36.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:36.658 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:26:36.658 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:26:36.688 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:36.698 -07 000000593 INF: FPGA: Recv YRDPOS 132871
17-03-17 18:26:36.698 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:26:36.698 -07 000000626 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:36.698 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:26:36.698 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 18:26:37.648 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:37.648 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:26:37.658 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.658 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:37.668 -07 000000626 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:37.678 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:26:37.678 -07 000000626 INF: Y Motor: Moved to 64.8789 after 1423 ms (table move)
17-03-17 18:26:37.678 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176654 mm (DAC = 38590)
17-03-17 18:26:37.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.678 -07 000000626 INF: FPGA: Recv ZSGSRD 36787
17-03-17 18:26:37.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:37.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.688 -07 000000626 INF: FPGA: Recv ZSGSRD 36785
17-03-17 18:26:37.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.698 -07 000000424 INF: FPGA: Recv ZSGSRD 36787
17-03-17 18:26:37.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.718 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.985358,
17-03-17 18:26:37.718 -07 000000618 INF: FPGA: Recv ZSGSRD 36792
17-03-17 18:26:37.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:37.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.748 -07 000000626 INF: FPGA: Recv ZSGSRD 36790
17-03-17 18:26:37.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:26:37.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.758 -07 000000593 INF: FPGA: Recv ZSGSRD 36787
17-03-17 18:26:37.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.778 -07 000000482 INF: FPGA: Recv ZSGSRD 36785
17-03-17 18:26:37.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:37.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.788 -07 000000012 INF: FPGA: Recv ZSGSRD 36792
17-03-17 18:26:37.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.808 -07 000000626 INF: FPGA: Recv ZSGSRD 36790
17-03-17 18:26:37.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:37.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:37.818 -07 000000415 INF: FPGA: Recv ZSGSRD 36798
17-03-17 18:26:37.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.828 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:37.828 -07 000000462 INF: FPGA: Recv ZPIEZORD 32980
17-03-17 18:26:37.838 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:37.838 -07 000000431 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.4 V.
17-03-17 18:26:37.838 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36789 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36788 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36785 (-175.7 uncal um), Max = 36798 (-175.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:26:37.838 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36789, posNoise = 9, negNoise = 4
17-03-17 18:26:37.838 -07 000000431 INF: Z Motor: After move to -0.176654, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:37.838 -07 000000431 INF: Z Motor: Settle wait time = 1425 ms, measure time = 158 ms (allowed 150 ms), total time = 1583 ms
17-03-17 18:26:37.838 -07 000000431 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 18:26:37.838 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:26:37.838 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:37.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:37.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:37.838 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:37.838 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:37.838 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:37.838 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:37.838 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:26:37.838 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:37.848 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:37.848 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:37.858 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:26:37.858 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:26:37.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:37.908 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:38.108 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:38.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:38.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:38.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 18:26:38.148 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:38.148 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:38.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:26:38.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 18:26:38.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:38.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:38.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:26:38.248 -07 000000482 INF: Autofocus start
17-03-17 18:26:38.248 -07 000000482 INF: MeasureProfile start
17-03-17 18:26:38.248 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:38.248 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:38.258 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:38.258 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:38.258 -07 000000482 INF: MeasureProfile done
17-03-17 18:26:38.258 -07 000000482 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:26:38.258 -07 000000482 INF: Autofocus finished
17-03-17 18:26:38.458 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:38.458 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:38.468 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176663692494379. ----------
17-03-17 18:26:38.468 -07 000000610 INF: Cycle	13	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:38.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37123, sync = True, waitForSettling = True)
17-03-17 18:26:38.478 -07 000000610 INF: Z Motor: Moving to -0.169938 mm, started at -0.176664 mm, distance = 6.73 um
17-03-17 18:26:38.478 -07 000000610 INF: FPGA: Xmit ZDACW 37123\n [Z Motor]
17-03-17 18:26:38.478 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:26:38.488 -07 000000610 INF: FPGA: 'ZDACW 37123' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:38.488 -07 000000415 INF: FPGA: Recv ZDACR 37123
17-03-17 18:26:38.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.648 -07 000000593 INF: FPGA: Recv ZSGSRD 35739
17-03-17 18:26:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35748
17-03-17 18:26:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.668 -07 000000462 INF: FPGA: Recv ZSGSRD 35746
17-03-17 18:26:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.678 -07 000000482 INF: FPGA: Recv ZSGSRD 35745
17-03-17 18:26:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.688 -07 000000626 INF: FPGA: Recv ZSGSRD 35748
17-03-17 18:26:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35736
17-03-17 18:26:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35745
17-03-17 18:26:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.718 -07 000000593 INF: FPGA: Recv ZSGSRD 35743
17-03-17 18:26:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35742
17-03-17 18:26:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:38.738 -07 000000462 INF: FPGA: Recv ZSGSRD 35748
17-03-17 18:26:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:38.748 -07 000000012 INF: FPGA: Recv ZPIEZORD 31616
17-03-17 18:26:38.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:38.758 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.665 V. Piezo Error = -9.1 V.
17-03-17 18:26:38.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35744 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35745 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35736 (-169.0 uncal um), Max = 35748 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:26:38.758 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35744, posNoise = 4, negNoise = 8
17-03-17 18:26:38.758 -07 000000610 INF: Z Motor: After move to -0.169938, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:38.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:26:38.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:38.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:38.758 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:38.758 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:38.758 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:38.758 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:38.758 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:38.758 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:38.758 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:26:38.758 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:38.758 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:26:38.758 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:38.768 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:38.768 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:38.768 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:26:38.768 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:38.778 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:26:38.778 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:26:38.778 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:26:38.778 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:26:38.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37299 150\n [Camera]
17-03-17 18:26:38.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:39.368 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:39.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:39.368 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:39.368 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:39.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:26:39.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:39.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:39.378 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:39.378 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:39.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) start.
17-03-17 18:26:39.558 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37299 778
17-03-17 18:26:39.708 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:39.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:26:39.758 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:26:39.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:39.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:26:39.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:26:39.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:39.758 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:39.758 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:26:39.768 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:39.768 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:26:39.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:26:39.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:26:39.908 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:40.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:26:40.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:26:40.028 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:40.028 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:40.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:26:40.028 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:40.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:26:40.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:26:40.098 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:40.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37299 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:26:40.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:40.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169950390806239. ------
17-03-17 18:26:40.098 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:40.098 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17640 mm
17-03-17 18:26:40.098 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:40.098 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:26:40.098 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 18:26:40.108 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:40.108 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:26:40.108 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:40.108 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38534, sync = True, waitForSettling = False)
17-03-17 18:26:40.108 -07 000000593 INF: Z Motor: Moving to -0.176397 mm, started at -0.169950 mm, distance = -6.45 um
17-03-17 18:26:40.108 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:26:40.118 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:40.118 -07 000000012 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:40.118 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:40.118 -07 000000012 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:26:40.118 -07 000000593 INF: FPGA: Xmit ZDACW 38534\n [Z Motor]
17-03-17 18:26:40.118 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:26:40.128 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:40.128 -07 000000593 INF: FPGA: 'ZDACW 38534' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:40.138 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:40.148 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:40.148 -07 000000431 INF: FPGA: Recv ZDACR 38534
17-03-17 18:26:40.158 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:26:40.158 -07 000000593 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:26:40.328 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:40.328 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:40.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:26:40.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:26:40.408 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:40.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:26:40.408 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:26:40.408 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:40.408 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:40.408 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 18:26:40.408 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:40.418 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:26:40.508 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:26:40.508 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:26:40.548 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:40.548 -07 000000482 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:26:40.558 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:40.558 -07 000000012 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:40.558 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:26:40.558 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:26:41.508 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:41.508 -07 000000593 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:26:41.518 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:41.518 -07 000000012 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:41.538 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:41.538 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:41.538 -07 000000012 INF: Y Motor: Moved to 65.7139 after 1435 ms (table move)
17-03-17 18:26:41.548 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176397 mm (DAC = 38534)
17-03-17 18:26:41.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.548 -07 000000012 INF: FPGA: Recv ZSGSRD 36744
17-03-17 18:26:41.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.558 -07 000000382 INF: FPGA: Recv ZSGSRD 36743
17-03-17 18:26:41.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:26:41.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.568 -07 000000623 INF: FPGA: Recv ZSGSRD 36748
17-03-17 18:26:41.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.578 -07 000000547 INF: FPGA: Recv ZSGSRD 36750
17-03-17 18:26:41.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.588 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.588 -07 000000382 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:26:41.588 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:41.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:41.598 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.598 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.598 -07 000000431 INF: FPGA: Recv ZSGSRD 36747
17-03-17 18:26:41.608 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.608 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.608 -07 000000462 INF: FPGA: Recv ZSGSRD 36749
17-03-17 18:26:41.618 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.618 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.618 -07 000000547 INF: FPGA: Recv ZSGSRD 36746
17-03-17 18:26:41.628 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.628 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.628 -07 000000012 INF: FPGA: Recv ZSGSRD 36749
17-03-17 18:26:41.638 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:41.638 -07 000000431 INF: FPGA: Recv ZSGSRD 36749
17-03-17 18:26:41.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.648 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:41.648 -07 000000593 INF: FPGA: Recv ZPIEZORD 32977
17-03-17 18:26:41.658 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:41.658 -07 000000438 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.4 V.
17-03-17 18:26:41.658 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36748 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36748 (-175.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36743 (-175.5 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:26:41.658 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36748, posNoise = 4, negNoise = 5
17-03-17 18:26:41.658 -07 000000438 INF: Z Motor: After move to -0.176397, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:41.658 -07 000000438 INF: Z Motor: Settle wait time = 1439 ms, measure time = 111 ms (allowed 150 ms), total time = 1550 ms
17-03-17 18:26:41.658 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:41.698 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:26:41.698 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:41.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:41.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:41.698 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:41.698 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:41.708 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:41.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:41.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:26:41.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:41.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:41.708 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:41.718 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:26:41.718 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:26:41.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:41.768 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:41.968 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:41.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:41.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:41.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 18:26:42.008 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:42.008 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:42.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:26:42.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:26:42.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:42.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:42.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:26:42.208 -07 000000012 INF: Autofocus start
17-03-17 18:26:42.208 -07 000000012 INF: MeasureProfile start
17-03-17 18:26:42.208 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:42.208 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:42.218 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:42.218 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:42.218 -07 000000012 INF: MeasureProfile done
17-03-17 18:26:42.218 -07 000000012 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:26:42.218 -07 000000012 INF: Autofocus finished
17-03-17 18:26:42.418 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:42.418 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:42.418 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176400299796567. ----------
17-03-17 18:26:42.418 -07 000000610 INF: Cycle	13	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:42.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37067, sync = True, waitForSettling = True)
17-03-17 18:26:42.428 -07 000000610 INF: Z Motor: Moving to -0.169682 mm, started at -0.176400 mm, distance = 6.72 um
17-03-17 18:26:42.428 -07 000000610 INF: FPGA: Xmit ZDACW 37067\n [Z Motor]
17-03-17 18:26:42.428 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:26:42.438 -07 000000610 INF: FPGA: 'ZDACW 37067' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:42.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:42.438 -07 000000480 INF: FPGA: Recv ZDACR 37067
17-03-17 18:26:42.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:42.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.598 -07 000000482 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:26:42.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:42.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.608 -07 000000593 INF: FPGA: Recv ZSGSRD 35707
17-03-17 18:26:42.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.618 -07 000000438 INF: FPGA: Recv ZSGSRD 35704
17-03-17 18:26:42.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.628 -07 000000424 INF: FPGA: Recv ZSGSRD 35703
17-03-17 18:26:42.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.638 -07 000000561 INF: FPGA: Recv ZSGSRD 35706
17-03-17 18:26:42.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35697
17-03-17 18:26:42.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.658 -07 000000438 INF: FPGA: Recv ZSGSRD 35704
17-03-17 18:26:42.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.668 -07 000000424 INF: FPGA: Recv ZSGSRD 35706
17-03-17 18:26:42.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.678 -07 000000012 INF: FPGA: Recv ZSGSRD 35704
17-03-17 18:26:42.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:42.688 -07 000000593 INF: FPGA: Recv ZSGSRD 35704
17-03-17 18:26:42.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:42.698 -07 000000438 INF: FPGA: Recv ZPIEZORD 31542
17-03-17 18:26:42.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:42.708 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.2 V.
17-03-17 18:26:42.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35704 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35704 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35697 (-168.8 uncal um), Max = 35707 (-168.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:26:42.708 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35704, posNoise = 3, negNoise = 7
17-03-17 18:26:42.708 -07 000000610 INF: Z Motor: After move to -0.169682, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:42.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:26:42.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:42.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:42.708 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:42.708 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:42.708 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:42.708 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:42.708 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:42.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:42.708 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:42.708 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:42.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:42.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:42.718 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:42.718 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:42.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:26:42.718 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:42.728 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:26:42.728 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:26:42.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:26:42.728 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:26:42.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37244 150\n [Camera]
17-03-17 18:26:42.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:26:43.128 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.989471,
17-03-17 18:26:43.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:43.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:43.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:43.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:43.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:43.328 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:43.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:43.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 18:26:43.338 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:43.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 18:26:43.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37244 778
17-03-17 18:26:43.668 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:43.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:26:43.708 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:26:43.708 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:43.718 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:43.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:26:43.718 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:26:43.718 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:43.718 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:26:43.718 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:43.718 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:26:43.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:43.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:43.858 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:43.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:43.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:43.968 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:43.968 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:43.968 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:43.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) start.
17-03-17 18:26:43.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:26:44.048 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:26:44.048 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:44.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37244 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:26:44.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:44.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169693422320568. ------
17-03-17 18:26:44.058 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:44.058 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17618 mm
17-03-17 18:26:44.058 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:44.058 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38486, sync = True, waitForSettling = False)
17-03-17 18:26:44.058 -07 000000462 INF: Z Motor: Moving to -0.176178 mm, started at -0.169693 mm, distance = -6.48 um
17-03-17 18:26:44.058 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:44.058 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:26:44.058 -07 000000482 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 18:26:44.068 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:44.068 -07 000000462 INF: FPGA: Xmit ZDACW 38486\n [Z Motor]
17-03-17 18:26:44.068 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:26:44.078 -07 000000462 INF: FPGA: 'ZDACW 38486' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:26:44.078 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:44.078 -07 000000547 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:26:44.088 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:44.088 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:26:44.088 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:44.088 -07 000000482 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:44.088 -07 000000482 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:26:44.098 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:44.098 -07 000000424 INF: FPGA: Recv ZDACR 38486
17-03-17 18:26:44.108 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:44.108 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:44.108 -07 000000462 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:26:44.288 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:44.288 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:44.358 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:26:44.358 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:26:44.358 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:44.358 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:44.358 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:26:44.358 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:26:44.358 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:44.368 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:44.368 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 18:26:44.368 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:26:44.478 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:26:44.478 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:26:44.518 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:44.518 -07 000000462 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:26:44.528 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:44.528 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:44.528 -07 000000482 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:26:44.528 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.140 mm/sec
17-03-17 18:26:45.478 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:45.478 -07 000000480 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:26:45.488 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:45.488 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:45.508 -07 000000482 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:45.508 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:45.508 -07 000000482 INF: Y Motor: Moved to 66.5391 after 1444 ms (table move)
17-03-17 18:26:45.508 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176178 mm (DAC = 38486)
17-03-17 18:26:45.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.508 -07 000000462 INF: FPGA: Recv ZSGSRD 36706
17-03-17 18:26:45.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:45.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.518 -07 000000424 INF: FPGA: Recv ZSGSRD 36709
17-03-17 18:26:45.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.528 -07 000000438 INF: FPGA: Recv ZSGSRD 36714
17-03-17 18:26:45.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.538 -07 000000626 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:26:45.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.548 -07 000000438 INF: FPGA: Recv ZSGSRD 36718
17-03-17 18:26:45.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.558 -07 000000480 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:26:45.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.568 -07 000000547 INF: FPGA: Recv ZSGSRD 36714
17-03-17 18:26:45.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36717
17-03-17 18:26:45.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.588 -07 000000462 INF: FPGA: Recv ZSGSRD 36712
17-03-17 18:26:45.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:45.598 -07 000000547 INF: FPGA: Recv ZSGSRD 36716
17-03-17 18:26:45.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.608 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:45.608 -07 000000547 INF: FPGA: Recv ZPIEZORD 32943
17-03-17 18:26:45.618 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:45.618 -07 000000561 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.4 V.
17-03-17 18:26:45.618 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36714 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36714 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36706 (-175.2 uncal um), Max = 36719 (-175.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:26:45.618 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36714, posNoise = 5, negNoise = 8
17-03-17 18:26:45.618 -07 000000561 INF: Z Motor: After move to -0.176178, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:45.618 -07 000000561 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:26:45.618 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:45.668 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:26:45.668 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:45.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:45.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:45.678 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:45.678 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:45.678 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:45.678 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:45.678 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:45.678 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:45.678 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:45.678 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:45.688 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:26:45.688 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:26:45.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:45.738 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:45.938 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:45.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:45.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:45.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456144144, 0x0, 559484976) start.
17-03-17 18:26:45.978 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:45.978 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:45.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:26:46.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456144144, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:26:46.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:46.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:46.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:26:46.078 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:46.078 -07 000000462 INF: Autofocus start
17-03-17 18:26:46.078 -07 000000462 INF: MeasureProfile start
17-03-17 18:26:46.078 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:46.088 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:26:46.088 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:46.088 -07 000000462 INF: MeasureProfile done
17-03-17 18:26:46.088 -07 000000462 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 18:26:46.088 -07 000000462 INF: Autofocus finished
17-03-17 18:26:46.288 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:46.288 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:46.288 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176181876583747. ----------
17-03-17 18:26:46.288 -07 000000610 INF: Cycle	13	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:46.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36929, sync = True, waitForSettling = True)
17-03-17 18:26:46.298 -07 000000610 INF: Z Motor: Moving to -0.169050 mm, started at -0.176182 mm, distance = 7.13 um
17-03-17 18:26:46.298 -07 000000610 INF: FPGA: Xmit ZDACW 36929\n [Z Motor]
17-03-17 18:26:46.298 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:26:46.308 -07 000000610 INF: FPGA: 'ZDACW 36929' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:46.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:46.308 -07 000000424 INF: FPGA: Recv ZDACR 36929
17-03-17 18:26:46.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:46.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.468 -07 000000462 INF: FPGA: Recv ZSGSRD 35607
17-03-17 18:26:46.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:46.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.478 -07 000000547 INF: FPGA: Recv ZSGSRD 35601
17-03-17 18:26:46.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35603
17-03-17 18:26:46.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35608
17-03-17 18:26:46.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.508 -07 000000547 INF: FPGA: Recv ZSGSRD 35611
17-03-17 18:26:46.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.518 -07 000000438 INF: FPGA: Recv ZSGSRD 35600
17-03-17 18:26:46.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35603
17-03-17 18:26:46.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35607
17-03-17 18:26:46.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.548 -07 000000424 INF: FPGA: Recv ZSGSRD 35605
17-03-17 18:26:46.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:46.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:46.558 -07 000000482 INF: FPGA: Recv ZSGSRD 35604
17-03-17 18:26:46.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:46.568 -07 000000547 INF: FPGA: Recv ZPIEZORD 31405
17-03-17 18:26:46.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:46.578 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-17 18:26:46.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35605 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35600 (-168.2 uncal um), Max = 35611 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:26:46.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35605, posNoise = 6, negNoise = 5
17-03-17 18:26:46.578 -07 000000610 INF: Z Motor: After move to -0.169050, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:46.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:26:46.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:46.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:46.578 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:46.578 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:46.578 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:46.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:46.578 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:46.578 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:46.578 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:46.578 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:46.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:46.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:46.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:46.588 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:46.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:26:46.588 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:46.588 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:46.598 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:26:46.598 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:26:46.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:26:46.598 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:26:46.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37106 150\n [Camera]
17-03-17 18:26:46.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:47.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:47.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:47.198 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:47.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:47.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:47.198 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:47.198 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:47.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:26:47.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:47.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:26:47.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37106 778
17-03-17 18:26:47.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:47.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:26:47.598 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:26:47.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:47.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:26:47.608 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:26:47.608 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:47.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:26:47.618 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:26:47.618 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 18:26:47.618 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-17 18:26:47.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:47.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:47.728 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:47.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:47.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:47.838 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:47.838 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:47.838 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:26:47.838 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:47.838 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:26:47.918 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:26:47.918 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:47.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37106 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:26:47.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:47.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169057425318534. ------
17-03-17 18:26:47.928 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17575 mm
17-03-17 18:26:47.928 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:47.928 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:47.928 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:47.928 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:26:47.928 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 18:26:47.928 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38393, sync = True, waitForSettling = False)
17-03-17 18:26:47.928 -07 000000618 INF: Z Motor: Moving to -0.175752 mm, started at -0.169057 mm, distance = -6.69 um
17-03-17 18:26:47.938 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:47.938 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:47.938 -07 000000482 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:26:47.948 -07 000000618 INF: FPGA: Xmit ZDACW 38393\n [Z Motor]
17-03-17 18:26:47.948 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:26:47.948 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:47.948 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:26:47.948 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:47.948 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:26:47.958 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:47.958 -07 000000618 INF: FPGA: 'ZDACW 38393' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:26:47.968 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:47.978 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:47.978 -07 000000561 INF: FPGA: Recv ZDACR 38393
17-03-17 18:26:47.988 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:47.988 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:26:48.158 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:48.158 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:48.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:26:48.218 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:26:48.218 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:48.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:26:48.218 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:26:48.218 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:48.218 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:48.218 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:48.218 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 493 ms.
17-03-17 18:26:48.228 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:26:48.338 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:26:48.338 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:26:48.378 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:48.378 -07 000000480 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:26:48.388 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:48.388 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:48.388 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 18:26:48.388 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 18:26:48.488 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.996267,
17-03-17 18:26:49.338 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:49.338 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:26:49.348 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:49.348 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:49.368 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:49.368 -07 000000438 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:49.368 -07 000000438 INF: Y Motor: Moved to 67.3721 after 1434 ms (table move)
17-03-17 18:26:49.368 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175752 mm (DAC = 38393)
17-03-17 18:26:49.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.368 -07 000000626 INF: FPGA: Recv ZSGSRD 36651
17-03-17 18:26:49.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:49.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.378 -07 000000480 INF: FPGA: Recv ZSGSRD 36648
17-03-17 18:26:49.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.388 -07 000000429 INF: FPGA: Recv ZSGSRD 36643
17-03-17 18:26:49.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.398 -07 000000438 INF: FPGA: Recv ZSGSRD 36651
17-03-17 18:26:49.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.408 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.408 -07 000000429 INF: FPGA: Recv ZSGSRD 36650
17-03-17 18:26:49.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.418 -07 000000561 INF: FPGA: Recv ZSGSRD 36653
17-03-17 18:26:49.428 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.428 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.428 -07 000000626 INF: FPGA: Recv ZSGSRD 36647
17-03-17 18:26:49.438 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.438 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.438 -07 000000429 INF: FPGA: Recv ZSGSRD 36640
17-03-17 18:26:49.448 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.448 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.448 -07 000000438 INF: FPGA: Recv ZSGSRD 36650
17-03-17 18:26:49.458 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.458 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:49.458 -07 000000429 INF: FPGA: Recv ZSGSRD 36646
17-03-17 18:26:49.468 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.468 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:49.468 -07 000000480 INF: FPGA: Recv ZPIEZORD 32818
17-03-17 18:26:49.478 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:49.478 -07 000000547 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.5 V.
17-03-17 18:26:49.478 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36648 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36640 (-174.8 uncal um), Max = 36653 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:26:49.478 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36648, posNoise = 5, negNoise = 8
17-03-17 18:26:49.478 -07 000000547 INF: Z Motor: After move to -0.175752, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:49.478 -07 000000547 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:26:49.478 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:49.528 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:26:49.528 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:49.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:49.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:49.528 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:49.528 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:49.528 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:49.528 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:49.528 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:49.528 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:49.538 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:49.538 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:49.548 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:26:49.548 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:26:49.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:49.598 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:49.798 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:49.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:49.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:49.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 18:26:49.838 -07 000000429 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:26:49.838 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:49.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:26:49.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:26:49.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:49.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:49.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:26:49.938 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:49.938 -07 000000382 INF: Autofocus start
17-03-17 18:26:49.938 -07 000000382 INF: MeasureProfile start
17-03-17 18:26:49.938 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:49.948 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:26:49.948 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:49.948 -07 000000382 INF: MeasureProfile done
17-03-17 18:26:49.948 -07 000000382 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:26:49.948 -07 000000382 INF: Autofocus finished
17-03-17 18:26:50.148 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:50.148 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:50.148 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.17575787858239. ----------
17-03-17 18:26:50.158 -07 000000610 INF: Cycle	13	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:50.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36944, sync = True, waitForSettling = True)
17-03-17 18:26:50.158 -07 000000610 INF: Z Motor: Moving to -0.169119 mm, started at -0.175758 mm, distance = 6.64 um
17-03-17 18:26:50.158 -07 000000610 INF: FPGA: Xmit ZDACW 36944\n [Z Motor]
17-03-17 18:26:50.158 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:26:50.168 -07 000000610 INF: FPGA: 'ZDACW 36944' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:50.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:50.168 -07 000000480 INF: FPGA: Recv ZDACR 36944
17-03-17 18:26:50.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:50.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.328 -07 000000429 INF: FPGA: Recv ZSGSRD 35613
17-03-17 18:26:50.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:50.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35615
17-03-17 18:26:50.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.348 -07 000000382 INF: FPGA: Recv ZSGSRD 35615
17-03-17 18:26:50.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35619
17-03-17 18:26:50.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.368 -07 000000561 INF: FPGA: Recv ZSGSRD 35616
17-03-17 18:26:50.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.378 -07 000000480 INF: FPGA: Recv ZSGSRD 35614
17-03-17 18:26:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35617
17-03-17 18:26:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.408 -07 000000547 INF: FPGA: Recv ZSGSRD 35616
17-03-17 18:26:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35611
17-03-17 18:26:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:50.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35615
17-03-17 18:26:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:50.438 -07 000000626 INF: FPGA: Recv ZPIEZORD 31466
17-03-17 18:26:50.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:50.448 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.2 V.
17-03-17 18:26:50.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35615 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35615 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35611 (-168.2 uncal um), Max = 35619 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:26:50.448 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35615, posNoise = 4, negNoise = 4
17-03-17 18:26:50.448 -07 000000610 INF: Z Motor: After move to -0.169119, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:50.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 18:26:50.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:50.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:50.448 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:50.448 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:50.448 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:50.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:50.448 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:50.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:50.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:26:50.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:50.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:26:50.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:50.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:26:50.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:50.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:50.458 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:50.468 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:26:50.468 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:26:50.468 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:26:50.468 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:26:50.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37120 150\n [Camera]
17-03-17 18:26:50.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:51.058 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:51.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:51.058 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:51.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:51.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:51.058 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:51.068 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:51.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:26:51.068 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:51.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:26:51.248 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37120 778
17-03-17 18:26:51.398 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:51.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:26:51.438 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:26:51.438 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:51.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:26:51.438 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:26:51.438 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:51.558 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 118 ms.
17-03-17 18:26:51.558 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 119 ms.
17-03-17 18:26:51.558 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 18:26:51.568 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 18:26:51.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:51.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:51.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:51.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:51.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:51.598 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:51.598 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:51.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:51.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:51.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:26:51.598 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:51.598 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:26:51.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:26:51.778 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:51.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37120 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 18:26:51.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:51.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169121667439951. ------
17-03-17 18:26:51.788 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:51.788 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17506 mm
17-03-17 18:26:51.788 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:51.788 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:51.788 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:26:51.788 -07 000000382 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 18:26:51.798 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:26:51.798 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:51.798 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38241, sync = True, waitForSettling = False)
17-03-17 18:26:51.798 -07 000000547 INF: Z Motor: Moving to -0.175056 mm, started at -0.169122 mm, distance = -5.93 um
17-03-17 18:26:51.808 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:51.808 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:26:51.818 -07 000000547 INF: FPGA: Xmit ZDACW 38241\n [Z Motor]
17-03-17 18:26:51.818 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:26:51.818 -07 000000382 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:51.818 -07 000000382 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:51.818 -07 000000382 INF: Y Motor: Moving 1345 steps-22
17-03-17 18:26:51.818 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:26:51.828 -07 000000547 INF: FPGA: 'ZDACW 38241' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:51.828 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:51.838 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:51.838 -07 000000424 INF: FPGA: Recv ZDACR 38241
17-03-17 18:26:51.848 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:26:51.848 -07 000000547 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:26:51.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:26:51.988 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:26:51.988 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:51.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:26:51.988 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:26:51.988 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:51.988 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:51.988 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:26:51.998 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:51.998 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:51.998 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:51.998 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:26:52.198 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:26:52.198 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:26:52.238 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:52.238 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:26:52.248 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:52.248 -07 000000382 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:52.248 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:26:52.248 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.172 mm/sec
17-03-17 18:26:53.198 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:53.198 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:26:53.208 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.208 -07 000000382 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:53.218 -07 000000382 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:53.218 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:53.218 -07 000000382 INF: Y Motor: Moved to 68.2051 after 1430 ms (table move)
17-03-17 18:26:53.228 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175056 mm (DAC = 38241)
17-03-17 18:26:53.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.228 -07 000000012 INF: FPGA: Recv ZSGSRD 36541
17-03-17 18:26:53.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:53.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.238 -07 000000593 INF: FPGA: Recv ZSGSRD 36538
17-03-17 18:26:53.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.248 -07 000000561 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:26:53.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.258 -07 000000429 INF: FPGA: Recv ZSGSRD 36542
17-03-17 18:26:53.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:26:53.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36540
17-03-17 18:26:53.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.278 -07 000000593 INF: FPGA: Recv ZSGSRD 36541
17-03-17 18:26:53.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.288 -07 000000482 INF: FPGA: Recv ZSGSRD 36533
17-03-17 18:26:53.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.298 -07 000000424 INF: FPGA: Recv ZSGSRD 36535
17-03-17 18:26:53.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36538
17-03-17 18:26:53.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:53.318 -07 000000593 INF: FPGA: Recv ZSGSRD 36540
17-03-17 18:26:53.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.328 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:53.328 -07 000000561 INF: FPGA: Recv ZPIEZORD 32664
17-03-17 18:26:53.338 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:53.338 -07 000000415 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.6 V.
17-03-17 18:26:53.338 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36540 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36533 (-174.1 uncal um), Max = 36550 (-174.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:26:53.338 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36540, posNoise = 10, negNoise = 7
17-03-17 18:26:53.338 -07 000000415 INF: Z Motor: After move to -0.175056, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:53.338 -07 000000415 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:26:53.338 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:53.388 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:26:53.388 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:53.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:53.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:53.388 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:53.388 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:53.388 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:53.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:53.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:53.388 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:53.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:53.398 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:53.408 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:26:53.408 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:26:53.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:53.458 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:53.658 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:53.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:53.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:53.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 18:26:53.698 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:53.698 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:53.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:26:53.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:26:53.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:53.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:26:53.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:26:53.798 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:53.798 -07 000000431 INF: Autofocus start
17-03-17 18:26:53.798 -07 000000431 INF: MeasureProfile start
17-03-17 18:26:53.798 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:53.808 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:53.808 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:53.808 -07 000000431 INF: MeasureProfile done
17-03-17 18:26:53.808 -07 000000431 INF: X=112  Z correction [um]=0.5011052
17-03-17 18:26:53.808 -07 000000431 INF: Autofocus finished
17-03-17 18:26:53.848 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.016692,
17-03-17 18:26:54.008 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:54.008 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:26:54.008 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.17506406367108. ----------
17-03-17 18:26:54.008 -07 000000610 INF: Cycle	13	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:54.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36863, sync = True, waitForSettling = True)
17-03-17 18:26:54.018 -07 000000610 INF: Z Motor: Moving to -0.168748 mm, started at -0.175064 mm, distance = 6.32 um
17-03-17 18:26:54.018 -07 000000610 INF: FPGA: Xmit ZDACW 36863\n [Z Motor]
17-03-17 18:26:54.018 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:26:54.028 -07 000000610 INF: FPGA: 'ZDACW 36863' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:54.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:54.028 -07 000000415 INF: FPGA: Recv ZDACR 36863
17-03-17 18:26:54.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.188 -07 000000561 INF: FPGA: Recv ZSGSRD 35559
17-03-17 18:26:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.198 -07 000000012 INF: FPGA: Recv ZSGSRD 35558
17-03-17 18:26:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35552
17-03-17 18:26:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.218 -07 000000429 INF: FPGA: Recv ZSGSRD 35558
17-03-17 18:26:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35560
17-03-17 18:26:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.238 -07 000000547 INF: FPGA: Recv ZSGSRD 35559
17-03-17 18:26:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35557
17-03-17 18:26:54.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.258 -07 000000429 INF: FPGA: Recv ZSGSRD 35561
17-03-17 18:26:54.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.268 -07 000000424 INF: FPGA: Recv ZSGSRD 35562
17-03-17 18:26:54.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:54.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35561
17-03-17 18:26:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:54.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 31370
17-03-17 18:26:54.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:54.298 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.625 V. Piezo Error = -9.2 V.
17-03-17 18:26:54.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35559 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35559 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35552 (-167.8 uncal um), Max = 35562 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:26:54.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35559, posNoise = 3, negNoise = 7
17-03-17 18:26:54.298 -07 000000610 INF: Z Motor: After move to -0.168748, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:54.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:26:54.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:54.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:54.298 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:54.298 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:54.298 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:54.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:54.298 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:54.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:54.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:54.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:54.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:54.298 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:54.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:26:54.308 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:54.308 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:26:54.308 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:54.318 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:26:54.318 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:26:54.318 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:26:54.318 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:26:54.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37040 150\n [Camera]
17-03-17 18:26:54.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:54.908 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:54.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:54.908 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:54.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:54.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:54.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:54.918 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:54.918 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:26:54.918 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:54.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1456144144, 0x0, 391868352) start.
17-03-17 18:26:55.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37040 778
17-03-17 18:26:55.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:55.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:26:55.288 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:26:55.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:55.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:55.298 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1456144144, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:26:55.298 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:26:55.298 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:55.298 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:55.298 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:26:55.308 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:26:55.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:55.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:55.448 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:55.448 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:55.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1071943272, 0x0, 391868352) start.
17-03-17 18:26:55.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:55.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:55.448 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:55.448 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:55.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1107365536, 0x0, 418435064) start.
17-03-17 18:26:55.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:26:55.638 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:55.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37040 150' command took 2 ms to send, 1314 ms to get response, and 1318 ms overall
17-03-17 18:26:55.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:55.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168761911560013. ------
17-03-17 18:26:55.638 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:55.638 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17532 mm
17-03-17 18:26:55.638 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:55.648 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:55.648 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:26:55.648 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:55.648 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38298, sync = True, waitForSettling = False)
17-03-17 18:26:55.648 -07 000000415 INF: Z Motor: Moving to -0.175317 mm, started at -0.168762 mm, distance = -6.56 um
17-03-17 18:26:55.648 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:26:55.648 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 18:26:55.658 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:55.658 -07 000000476 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:26:55.668 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:26:55.668 -07 000000438 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:55.668 -07 000000415 INF: FPGA: Xmit ZDACW 38298\n [Z Motor]
17-03-17 18:26:55.668 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:55.668 -07 000000438 INF: Y Motor: Moving 1339 steps-15
17-03-17 18:26:55.668 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:26:55.678 -07 000000415 INF: FPGA: 'ZDACW 38298' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:26:55.678 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:55.678 -07 000000480 INF: FPGA: Recv ZDACR 38298
17-03-17 18:26:55.688 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:55.688 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:55.688 -07 000000415 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:26:55.848 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1071943272, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:26:55.848 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:26:55.848 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:55.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1107365536, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:26:55.848 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:26:55.848 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:55.848 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:55.848 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:26:55.858 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:26:55.858 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:26:55.858 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:26:55.858 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:26:56.058 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:26:56.058 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:26:56.108 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:56.108 -07 000000475 INF: FPGA: Recv YRDPOS 141367
17-03-17 18:26:56.118 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:26:56.118 -07 000000438 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:56.118 -07 000000438 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:26:56.118 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.120 mm/sec
17-03-17 18:26:56.588 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:26:56.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:26:57.068 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:57.068 -07 000000561 INF: FPGA: Recv YRDPOS 141367
17-03-17 18:26:57.078 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.078 -07 000000438 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:57.098 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:26:57.098 -07 000000438 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:26:57.098 -07 000000438 INF: Y Motor: Moved to 69.0269 after 1446 ms (table move)
17-03-17 18:26:57.098 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175317 mm (DAC = 38298)
17-03-17 18:26:57.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.098 -07 000000608 INF: FPGA: Recv ZSGSRD 36585
17-03-17 18:26:57.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:57.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.108 -07 000000561 INF: FPGA: Recv ZSGSRD 36571
17-03-17 18:26:57.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.118 -07 000000623 INF: FPGA: Recv ZSGSRD 36577
17-03-17 18:26:57.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.128 -07 000000593 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:26:57.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.138 -07 000000547 INF: FPGA: Recv ZSGSRD 36585
17-03-17 18:26:57.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.148 -07 000000482 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:26:57.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.158 -07 000000502 INF: FPGA: Recv ZSGSRD 36577
17-03-17 18:26:57.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.168 -07 000000382 INF: FPGA: Recv ZSGSRD 36580
17-03-17 18:26:57.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36581
17-03-17 18:26:57.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:57.188 -07 000000424 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:26:57.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.198 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:57.198 -07 000000462 INF: FPGA: Recv ZPIEZORD 32724
17-03-17 18:26:57.208 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:57.208 -07 000000431 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.5 V.
17-03-17 18:26:57.208 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36580 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36580 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36571 (-174.4 uncal um), Max = 36585 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:26:57.208 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36580, posNoise = 5, negNoise = 9
17-03-17 18:26:57.208 -07 000000431 INF: Z Motor: After move to -0.175317, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:57.208 -07 000000431 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:26:57.208 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:26:57.258 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 18:26:57.258 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:26:57.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:57.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:57.258 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:57.258 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:57.268 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:26:57.268 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:57.268 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:57.268 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:26:57.268 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:26:57.268 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:26:57.278 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:26:57.278 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:26:57.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:26:57.328 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:26:57.528 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:26:57.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:26:57.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:26:57.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 18:26:57.568 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:26:57.568 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:26:57.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:26:57.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:26:57.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:57.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:26:57.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:26:57.668 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:57.668 -07 000000424 INF: Autofocus start
17-03-17 18:26:57.668 -07 000000424 INF: MeasureProfile start
17-03-17 18:26:57.668 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:57.678 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:26:57.678 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:26:57.698 -07 000000424 INF: MeasureProfile done
17-03-17 18:26:57.698 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:26:57.698 -07 000000424 INF: Autofocus finished
17-03-17 18:26:57.878 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:26:57.878 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:26:57.888 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175321032156751. ----------
17-03-17 18:26:57.888 -07 000000610 INF: Cycle	13	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:26:57.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36813, sync = True, waitForSettling = True)
17-03-17 18:26:57.888 -07 000000610 INF: Z Motor: Moving to -0.168519 mm, started at -0.175321 mm, distance = 6.80 um
17-03-17 18:26:57.888 -07 000000610 INF: FPGA: Xmit ZDACW 36813\n [Z Motor]
17-03-17 18:26:57.898 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:26:57.898 -07 000000610 INF: FPGA: 'ZDACW 36813' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:26:57.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:57.898 -07 000000476 INF: FPGA: Recv ZDACR 36813
17-03-17 18:26:57.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:57.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:26:58.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.058 -07 000000623 INF: FPGA: Recv ZSGSRD 35524
17-03-17 18:26:58.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.068 -07 000000482 INF: FPGA: Recv ZSGSRD 35520
17-03-17 18:26:58.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.078 -07 000000623 INF: FPGA: Recv ZSGSRD 35526
17-03-17 18:26:58.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.088 -07 000000382 INF: FPGA: Recv ZSGSRD 35518
17-03-17 18:26:58.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.098 -07 000000415 INF: FPGA: Recv ZSGSRD 35530
17-03-17 18:26:58.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:58.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.108 -07 000000424 INF: FPGA: Recv ZSGSRD 35520
17-03-17 18:26:58.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.118 -07 000000429 INF: FPGA: Recv ZSGSRD 35520
17-03-17 18:26:58.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.128 -07 000000424 INF: FPGA: Recv ZSGSRD 35524
17-03-17 18:26:58.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.138 -07 000000618 INF: FPGA: Recv ZSGSRD 35518
17-03-17 18:26:58.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:26:58.148 -07 000000475 INF: FPGA: Recv ZSGSRD 35525
17-03-17 18:26:58.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:26:58.158 -07 000000623 INF: FPGA: Recv ZPIEZORD 31335
17-03-17 18:26:58.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:26:58.168 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.2 V.
17-03-17 18:26:58.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35522 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35518 (-167.6 uncal um), Max = 35530 (-167.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:26:58.168 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35522, posNoise = 8, negNoise = 4
17-03-17 18:26:58.168 -07 000000610 INF: Z Motor: After move to -0.168519, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:26:58.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 18:26:58.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:26:58.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:26:58.168 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:26:58.168 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:26:58.168 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:26:58.168 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:26:58.168 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:26:58.168 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:26:58.168 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:26:58.168 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:26:58.168 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:26:58.168 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:26:58.178 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:26:58.178 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:26:58.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:26:58.178 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:26:58.188 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:26:58.188 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:26:58.188 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 18:26:58.188 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:26:58.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36989 150\n [Camera]
17-03-17 18:26:58.388 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:26:58.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:26:58.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:26:58.788 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:58.788 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:58.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1151598408, 0x0, 391868352) start.
17-03-17 18:26:58.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:26:58.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:26:58.788 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:58.788 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:58.788 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 18:26:58.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36989 778
17-03-17 18:26:59.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:26:59.178 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1151598408, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:26:59.178 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:26:59.178 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:59.178 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:26:59.178 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:26:59.178 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:59.178 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:59.178 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:26:59.188 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:59.188 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:26:59.208 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.003063,
17-03-17 18:26:59.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:26:59.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:26:59.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:26:59.318 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:26:59.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:26:59.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:26:59.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:26:59.318 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:26:59.318 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:26:59.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:26:59.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:26:59.508 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:26:59.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36989 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-17 18:26:59.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:26:59.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168524215710768. ------
17-03-17 18:26:59.518 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:26:59.518 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17497 mm
17-03-17 18:26:59.518 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:26:59.518 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:26:59.518 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:26:59.518 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38222, sync = True, waitForSettling = False)
17-03-17 18:26:59.518 -07 000000618 INF: Z Motor: Moving to -0.174969 mm, started at -0.168524 mm, distance = -6.44 um
17-03-17 18:26:59.518 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 18:26:59.528 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:26:59.528 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:59.528 -07 000000593 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:26:59.538 -07 000000618 INF: FPGA: Xmit ZDACW 38222\n [Z Motor]
17-03-17 18:26:59.538 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:26:59.538 -07 000000476 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:59.538 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:26:59.538 -07 000000476 INF: Y Motor: Moving 1352 steps-32
17-03-17 18:26:59.538 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:26:59.548 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:26:59.548 -07 000000618 INF: FPGA: 'ZDACW 38222' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:26:59.558 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:26:59.568 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:26:59.568 -07 000000382 INF: FPGA: Recv ZDACR 38222
17-03-17 18:26:59.578 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:26:59.578 -07 000000618 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:26:59.708 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:26:59.708 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:26:59.708 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:59.708 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:26:59.708 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:26:59.708 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:26:59.718 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:26:59.718 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:26:59.718 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:26:59.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:26:59.748 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:26:59.748 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:26:59.928 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:26:59.928 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:26:59.968 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:26:59.968 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:26:59.978 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:26:59.978 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:26:59.978 -07 000000476 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:26:59.978 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.141 mm/sec
17-03-17 18:27:00.928 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:00.928 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:27:00.938 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:00.938 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:00.958 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:00.958 -07 000000476 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:00.958 -07 000000476 INF: Y Motor: Moved to 69.8633 after 1435 ms (table move)
17-03-17 18:27:00.958 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174969 mm (DAC = 38222)
17-03-17 18:27:00.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:00.958 -07 000000593 INF: FPGA: Recv ZSGSRD 36529
17-03-17 18:27:00.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:00.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:00.968 -07 000000476 INF: FPGA: Recv ZSGSRD 36526
17-03-17 18:27:00.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:00.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:00.978 -07 000000593 INF: FPGA: Recv ZSGSRD 36527
17-03-17 18:27:00.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:00.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:00.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36529
17-03-17 18:27:00.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:00.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:00.998 -07 000000382 INF: FPGA: Recv ZSGSRD 36527
17-03-17 18:27:01.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:01.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.008 -07 000000429 INF: FPGA: Recv ZSGSRD 36528
17-03-17 18:27:01.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.018 -07 000000593 INF: FPGA: Recv ZSGSRD 36526
17-03-17 18:27:01.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.028 -07 000000429 INF: FPGA: Recv ZSGSRD 36520
17-03-17 18:27:01.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.038 -07 000000431 INF: FPGA: Recv ZSGSRD 36527
17-03-17 18:27:01.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.048 -07 000000593 INF: FPGA: Recv ZSGSRD 36530
17-03-17 18:27:01.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.058 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:01.058 -07 000000618 INF: FPGA: Recv ZPIEZORD 32692
17-03-17 18:27:01.068 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.068 -07 000000480 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.5 V.
17-03-17 18:27:01.068 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36527 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36527 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36520 (-174.0 uncal um), Max = 36530 (-174.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:27:01.068 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36527, posNoise = 3, negNoise = 7
17-03-17 18:27:01.068 -07 000000480 INF: Z Motor: After move to -0.174969, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:01.068 -07 000000480 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:27:01.068 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:01.118 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:27:01.118 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:01.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:01.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:01.118 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:01.118 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:01.118 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:01.118 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:01.118 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:27:01.118 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:01.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:01.128 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:01.128 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:27:01.128 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:27:01.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:01.178 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:01.378 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:01.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:01.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:01.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:27:01.418 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:01.418 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:01.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:27:01.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:27:01.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:01.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:27:01.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:27:01.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:01.518 -07 000000429 INF: Autofocus start
17-03-17 18:27:01.518 -07 000000429 INF: MeasureProfile start
17-03-17 18:27:01.518 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:01.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:01.528 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:01.528 -07 000000429 INF: MeasureProfile done
17-03-17 18:27:01.538 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:27:01.538 -07 000000429 INF: Autofocus finished
17-03-17 18:27:01.588 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:01.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:01.728 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:01.728 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:01.728 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174980548913237. ----------
17-03-17 18:27:01.728 -07 000000610 INF: Cycle	13	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:01.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36737, sync = True, waitForSettling = True)
17-03-17 18:27:01.738 -07 000000610 INF: Z Motor: Moving to -0.168171 mm, started at -0.174981 mm, distance = 6.81 um
17-03-17 18:27:01.738 -07 000000610 INF: FPGA: Xmit ZDACW 36737\n [Z Motor]
17-03-17 18:27:01.738 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:27:01.748 -07 000000610 INF: FPGA: 'ZDACW 36737' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:01.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:01.748 -07 000000475 INF: FPGA: Recv ZDACR 36737
17-03-17 18:27:01.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:01.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.908 -07 000000480 INF: FPGA: Recv ZSGSRD 35464
17-03-17 18:27:01.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:01.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.918 -07 000000012 INF: FPGA: Recv ZSGSRD 35470
17-03-17 18:27:01.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.928 -07 000000561 INF: FPGA: Recv ZSGSRD 35467
17-03-17 18:27:01.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.938 -07 000000475 INF: FPGA: Recv ZSGSRD 35469
17-03-17 18:27:01.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.948 -07 000000429 INF: FPGA: Recv ZSGSRD 35469
17-03-17 18:27:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.958 -07 000000618 INF: FPGA: Recv ZSGSRD 35467
17-03-17 18:27:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.968 -07 000000424 INF: FPGA: Recv ZSGSRD 35471
17-03-17 18:27:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.978 -07 000000502 INF: FPGA: Recv ZSGSRD 35465
17-03-17 18:27:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35466
17-03-17 18:27:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:01.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35470
17-03-17 18:27:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:02.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:02.008 -07 000000561 INF: FPGA: Recv ZPIEZORD 31235
17-03-17 18:27:02.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:02.018 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.3 V.
17-03-17 18:27:02.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35468 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35464 (-167.3 uncal um), Max = 35471 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:27:02.018 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35468, posNoise = 3, negNoise = 4
17-03-17 18:27:02.018 -07 000000610 INF: Z Motor: After move to -0.168171, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:02.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:02.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:02.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:02.018 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:02.018 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:02.028 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:02.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:02.028 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:02.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:02.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:02.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:02.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:02.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:02.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:02.028 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:02.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:02.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:02.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:27:02.038 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:27:02.038 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:27:02.038 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:27:02.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36914 150\n [Camera]
17-03-17 18:27:02.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:02.638 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:27:02.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:27:02.638 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:02.638 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:02.638 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 18:27:02.638 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:27:02.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:27:02.648 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:02.648 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:02.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:27:02.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36914 778
17-03-17 18:27:02.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:03.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:27:03.028 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:27:03.028 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:03.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:27:03.028 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:27:03.028 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:03.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:03.028 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:03.028 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:27:03.038 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:27:03.168 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:03.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:03.168 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:03.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:03.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:27:03.168 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:03.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:03.178 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:03.178 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:03.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:27:03.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:27:03.358 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:03.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36914 150' command took 2 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:27:03.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:27:03.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168177308255113. ------
17-03-17 18:27:03.368 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:03.368 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17454 mm
17-03-17 18:27:03.368 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:03.368 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38128, sync = True, waitForSettling = False)
17-03-17 18:27:03.368 -07 000000424 INF: Z Motor: Moving to -0.174539 mm, started at -0.168177 mm, distance = -6.36 um
17-03-17 18:27:03.368 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:27:03.368 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 18:27:03.378 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:03.378 -07 000000424 INF: FPGA: Xmit ZDACW 38128\n [Z Motor]
17-03-17 18:27:03.378 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:03.378 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:27:03.388 -07 000000424 INF: FPGA: 'ZDACW 38128' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:27:03.388 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:03.398 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:03.398 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:27:03.408 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:03.408 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 18:27:03.408 -07 000000382 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:03.408 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:03.408 -07 000000382 INF: Y Motor: Moving 1343 steps-19
17-03-17 18:27:03.408 -07 000000618 INF: FPGA: Recv ZDACR 38128
17-03-17 18:27:03.418 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:03.418 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:27:03.418 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:03.578 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:27:03.578 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:27:03.578 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:03.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:27:03.578 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:27:03.578 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:03.578 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:03.578 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:27:03.578 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:27:03.588 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:03.588 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 18:27:03.588 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:27:03.788 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:27:03.788 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 18:27:03.828 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:03.828 -07 000000476 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:27:03.838 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:03.838 -07 000000382 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:03.838 -07 000000382 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:27:03.838 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-17 18:27:04.568 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.997626,
17-03-17 18:27:04.788 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:04.788 -07 000000547 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:27:04.798 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.798 -07 000000382 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:04.818 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:04.818 -07 000000382 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:04.818 -07 000000382 INF: Y Motor: Moved to 70.6885 after 1443 ms (table move)
17-03-17 18:27:04.818 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174539 mm (DAC = 38128)
17-03-17 18:27:04.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.818 -07 000000547 INF: FPGA: Recv ZSGSRD 36457
17-03-17 18:27:04.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:04.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.828 -07 000000618 INF: FPGA: Recv ZSGSRD 36454
17-03-17 18:27:04.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.838 -07 000000476 INF: FPGA: Recv ZSGSRD 36456
17-03-17 18:27:04.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.848 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.848 -07 000000547 INF: FPGA: Recv ZSGSRD 36460
17-03-17 18:27:04.858 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.858 -07 000000502 INF: FPGA: Recv ZSGSRD 36464
17-03-17 18:27:04.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.868 -07 000000424 INF: FPGA: Recv ZSGSRD 36462
17-03-17 18:27:04.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.878 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.878 -07 000000502 INF: FPGA: Recv ZSGSRD 36457
17-03-17 18:27:04.888 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.888 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.888 -07 000000424 INF: FPGA: Recv ZSGSRD 36459
17-03-17 18:27:04.898 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.898 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.898 -07 000000502 INF: FPGA: Recv ZSGSRD 36458
17-03-17 18:27:04.908 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.908 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:04.908 -07 000000424 INF: FPGA: Recv ZSGSRD 36462
17-03-17 18:27:04.918 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.918 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:04.918 -07 000000618 INF: FPGA: Recv ZPIEZORD 32615
17-03-17 18:27:04.928 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:04.928 -07 000000438 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.5 V.
17-03-17 18:27:04.928 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36459 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36458 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36454 (-173.6 uncal um), Max = 36464 (-173.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:27:04.928 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36459, posNoise = 5, negNoise = 5
17-03-17 18:27:04.928 -07 000000438 INF: Z Motor: After move to -0.174539, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:04.928 -07 000000438 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:27:04.928 -07 000000438 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:04.978 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:27:04.978 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:04.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:04.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:04.978 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:04.978 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:04.978 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:04.978 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:04.978 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:27:04.988 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:04.988 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:04.988 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:04.998 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:27:04.998 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:27:04.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:05.038 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:05.238 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:05.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:05.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:05.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 18:27:05.278 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:05.278 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:05.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:27:05.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:27:05.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:05.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:27:05.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:27:05.378 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:05.378 -07 000000618 INF: Autofocus start
17-03-17 18:27:05.378 -07 000000618 INF: MeasureProfile start
17-03-17 18:27:05.378 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:05.388 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:05.388 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:05.398 -07 000000618 INF: MeasureProfile done
17-03-17 18:27:05.398 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:27:05.398 -07 000000618 INF: Autofocus finished
17-03-17 18:27:05.588 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:05.588 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:05.588 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174543702487598. ----------
17-03-17 18:27:05.588 -07 000000610 INF: Cycle	13	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:05.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36625, sync = True, waitForSettling = True)
17-03-17 18:27:05.598 -07 000000610 INF: Z Motor: Moving to -0.167659 mm, started at -0.174544 mm, distance = 6.89 um
17-03-17 18:27:05.598 -07 000000610 INF: FPGA: Xmit ZDACW 36625\n [Z Motor]
17-03-17 18:27:05.598 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:27:05.608 -07 000000610 INF: FPGA: 'ZDACW 36625' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:05.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:05.608 -07 000000547 INF: FPGA: Recv ZDACR 36625
17-03-17 18:27:05.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:05.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.768 -07 000000438 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:27:05.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.778 -07 000000623 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:27:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35391
17-03-17 18:27:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.798 -07 000000424 INF: FPGA: Recv ZSGSRD 35387
17-03-17 18:27:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.808 -07 000000476 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:27:05.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.818 -07 000000424 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:27:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.828 -07 000000618 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:27:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35391
17-03-17 18:27:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.848 -07 000000547 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:27:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:05.858 -07 000000438 INF: FPGA: Recv ZSGSRD 35390
17-03-17 18:27:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:05.868 -07 000000547 INF: FPGA: Recv ZPIEZORD 31152
17-03-17 18:27:05.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:05.878 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.3 V.
17-03-17 18:27:05.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35391 (-166.8 uncal um), Error = 0.8 uncal um, Median = 35390 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35387 (-166.8 uncal um), Max = 35395 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:27:05.878 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35391, posNoise = 4, negNoise = 4
17-03-17 18:27:05.878 -07 000000610 INF: Z Motor: After move to -0.167659, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:05.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:05.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:05.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:05.878 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:05.878 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:05.878 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:05.878 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:05.878 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:05.878 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:05.878 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:05.878 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:05.878 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:05.878 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:05.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:05.888 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:05.888 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:05.888 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:05.898 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:27:05.898 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:27:05.898 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 18:27:05.898 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:27:05.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36802 150\n [Camera]
17-03-17 18:27:06.108 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:06.498 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:06.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:06.498 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:06.498 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:06.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:27:06.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:06.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:06.498 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:06.498 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:06.498 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:27:06.588 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:06.688 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36802 778
17-03-17 18:27:06.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:27:06.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:27:06.878 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:27:06.878 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:06.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:27:06.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:27:06.888 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:06.888 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:06.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:27:06.888 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:06.898 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:27:07.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:07.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:07.028 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:07.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:07.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:07.158 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:07.158 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:07.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:27:07.168 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:07.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:27:07.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:07.218 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:07.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36802 150' command took 2 ms to send, 1307 ms to get response, and 1316 ms overall
17-03-17 18:27:07.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:27:07.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167682643920197. ------
17-03-17 18:27:07.238 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:07.238 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17444 mm
17-03-17 18:27:07.238 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:07.238 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:07.238 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:27:07.238 -07 000000476 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 18:27:07.248 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:07.258 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38107, sync = True, waitForSettling = False)
17-03-17 18:27:07.258 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:07.258 -07 000000438 INF: Z Motor: Moving to -0.174443 mm, started at -0.167683 mm, distance = -6.76 um
17-03-17 18:27:07.258 -07 000000382 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:27:07.268 -07 000000476 INF: FPGA: 'YRDPOS' command took 11 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:27:07.268 -07 000000438 INF: FPGA: Xmit ZDACW 38107\n [Z Motor]
17-03-17 18:27:07.268 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:07.268 -07 000000476 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:07.268 -07 000000476 INF: Y Motor: Moving 1351 steps-29
17-03-17 18:27:07.268 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:27:07.278 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:07.278 -07 000000438 INF: FPGA: 'ZDACW 38107' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:27:07.288 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:07.298 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:07.298 -07 000000429 INF: FPGA: Recv ZDACR 38107
17-03-17 18:27:07.308 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:07.308 -07 000000438 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:27:07.478 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:07.478 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:27:07.538 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:27:07.538 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:27:07.538 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:07.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:27:07.548 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:27:07.548 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:07.548 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:07.548 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:07.548 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 18:27:07.548 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:27:07.658 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:27:07.658 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:27:07.698 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:07.698 -07 000000623 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:27:07.708 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:07.708 -07 000000476 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:07.708 -07 000000476 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:27:07.708 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.132 mm/sec
17-03-17 18:27:08.658 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:08.658 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:27:08.668 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:08.668 -07 000000476 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:08.688 -07 000000476 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:08.688 -07 000000476 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:08.688 -07 000000476 INF: Y Motor: Moved to 71.5190 after 1441 ms (table move)
17-03-17 18:27:08.688 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174443 mm (DAC = 38107)
17-03-17 18:27:08.688 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.688 -07 000000424 INF: FPGA: Recv ZSGSRD 36448
17-03-17 18:27:08.698 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:27:08.698 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.698 -07 000000482 INF: FPGA: Recv ZSGSRD 36436
17-03-17 18:27:08.708 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.708 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.708 -07 000000593 INF: FPGA: Recv ZSGSRD 36443
17-03-17 18:27:08.718 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.718 -07 000000462 INF: FPGA: Recv ZSGSRD 36441
17-03-17 18:27:08.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.728 -07 000000431 INF: FPGA: Recv ZSGSRD 36448
17-03-17 18:27:08.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36437
17-03-17 18:27:08.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36441
17-03-17 18:27:08.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.758 -07 000000593 INF: FPGA: Recv ZSGSRD 36442
17-03-17 18:27:08.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.768 -07 000000626 INF: FPGA: Recv ZSGSRD 36445
17-03-17 18:27:08.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:08.778 -07 000000482 INF: FPGA: Recv ZSGSRD 36440
17-03-17 18:27:08.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.788 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:08.788 -07 000000618 INF: FPGA: Recv ZPIEZORD 32556
17-03-17 18:27:08.798 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:08.798 -07 000000415 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.815 V. Piezo Error = -8.6 V.
17-03-17 18:27:08.798 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36442 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36442 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36436 (-173.5 uncal um), Max = 36448 (-173.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:08.798 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36442, posNoise = 6, negNoise = 6
17-03-17 18:27:08.798 -07 000000415 INF: Z Motor: After move to -0.174443, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:08.798 -07 000000415 INF: Z Motor: Settle wait time = 1432 ms, measure time = 106 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:27:08.798 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:08.848 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:27:08.848 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:08.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:08.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:08.848 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:08.848 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:08.848 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:08.848 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:08.848 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:08.848 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:08.858 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:08.858 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:08.858 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:27:08.858 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:27:08.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:08.908 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:27:09.108 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:27:09.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:27:09.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:09.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 18:27:09.148 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:09.148 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:09.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 18:27:09.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:27:09.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:09.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:09.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:27:09.248 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:09.248 -07 000000547 INF: Autofocus start
17-03-17 18:27:09.248 -07 000000547 INF: MeasureProfile start
17-03-17 18:27:09.248 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:09.258 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:09.258 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:09.258 -07 000000547 INF: MeasureProfile done
17-03-17 18:27:09.258 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:27:09.258 -07 000000547 INF: Autofocus finished
17-03-17 18:27:09.458 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:09.458 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:09.458 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174434490881188. ----------
17-03-17 18:27:09.458 -07 000000610 INF: Cycle	13	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:09.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36604, sync = True, waitForSettling = True)
17-03-17 18:27:09.468 -07 000000610 INF: Z Motor: Moving to -0.167562 mm, started at -0.174434 mm, distance = 6.87 um
17-03-17 18:27:09.468 -07 000000610 INF: FPGA: Xmit ZDACW 36604\n [Z Motor]
17-03-17 18:27:09.468 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:27:09.478 -07 000000610 INF: FPGA: 'ZDACW 36604' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:09.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:09.478 -07 000000415 INF: FPGA: Recv ZDACR 36604
17-03-17 18:27:09.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.638 -07 000000415 INF: FPGA: Recv ZSGSRD 35372
17-03-17 18:27:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35373
17-03-17 18:27:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.658 -07 000000547 INF: FPGA: Recv ZSGSRD 35381
17-03-17 18:27:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.668 -07 000000502 INF: FPGA: Recv ZSGSRD 35370
17-03-17 18:27:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.678 -07 000000012 INF: FPGA: Recv ZSGSRD 35373
17-03-17 18:27:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.688 -07 000000502 INF: FPGA: Recv ZSGSRD 35379
17-03-17 18:27:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.698 -07 000000382 INF: FPGA: Recv ZSGSRD 35376
17-03-17 18:27:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.708 -07 000000012 INF: FPGA: Recv ZSGSRD 35374
17-03-17 18:27:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.718 -07 000000480 INF: FPGA: Recv ZSGSRD 35366
17-03-17 18:27:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:09.728 -07 000000626 INF: FPGA: Recv ZSGSRD 35374
17-03-17 18:27:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:09.738 -07 000000480 INF: FPGA: Recv ZPIEZORD 31139
17-03-17 18:27:09.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:09.748 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.585 V. Piezo Error = -9.3 V.
17-03-17 18:27:09.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35374 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35374 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35366 (-166.7 uncal um), Max = 35381 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:27:09.748 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35374, posNoise = 7, negNoise = 8
17-03-17 18:27:09.748 -07 000000610 INF: Z Motor: After move to -0.167562, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:09.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:09.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:09.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:09.748 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:09.748 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:09.748 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:09.748 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:09.748 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:09.748 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:09.748 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:27:09.748 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:09.748 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:09.748 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:09.758 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:09.758 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:09.758 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:09.758 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:09.768 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:27:09.768 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:27:09.768 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:27:09.768 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:27:09.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36781 150\n [Camera]
17-03-17 18:27:09.928 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.012614,
17-03-17 18:27:09.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:10.358 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:10.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:10.358 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:10.358 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:10.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:10.368 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:10.368 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:10.368 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 18:27:10.368 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:10.368 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 18:27:10.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36781 778
17-03-17 18:27:10.698 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:10.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:27:10.738 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:27:10.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:10.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:10.868 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 498 ms.
17-03-17 18:27:10.868 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 18:27:10.868 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:10.868 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:10.868 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 18:27:10.868 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 18:27:10.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:10.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:10.888 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:10.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:10.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:10.898 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:10.898 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:10.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:27:10.898 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:10.898 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 18:27:11.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:11.088 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:11.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36781 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:27:11.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:27:11.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167573432313787. ------
17-03-17 18:27:11.088 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:11.088 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17344 mm
17-03-17 18:27:11.088 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:11.098 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:11.098 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:11.098 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:11.098 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37889, sync = True, waitForSettling = False)
17-03-17 18:27:11.098 -07 000000618 INF: Z Motor: Moving to -0.173445 mm, started at -0.167573 mm, distance = -5.87 um
17-03-17 18:27:11.098 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:27:11.098 -07 000000429 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 18:27:11.108 -07 000000618 INF: FPGA: Xmit ZDACW 37889\n [Z Motor]
17-03-17 18:27:11.108 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:27:11.118 -07 000000618 INF: FPGA: 'ZDACW 37889' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:27:11.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:11.118 -07 000000480 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:27:11.128 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:27:11.128 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:11.128 -07 000000429 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:11.128 -07 000000502 INF: FPGA: Recv ZDACR 37889
17-03-17 18:27:11.128 -07 000000429 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:11.128 -07 000000429 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:27:11.138 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:27:11.138 -07 000000618 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:27:11.138 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:11.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:27:11.288 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:27:11.288 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:11.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:27:11.288 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:27:11.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:11.288 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:11.288 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:27:11.298 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:11.298 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:11.298 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:27:11.298 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:27:11.518 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:27:11.518 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 387 ms overall
17-03-17 18:27:11.548 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:11.548 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:27:11.558 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:11.558 -07 000000429 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:11.558 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:27:11.558 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.169 mm/sec
17-03-17 18:27:11.588 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:11.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:12.508 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:12.508 -07 000000475 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:27:12.518 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.518 -07 000000429 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:12.538 -07 000000429 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:12.538 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:12.538 -07 000000429 INF: Y Motor: Moved to 72.3496 after 1440 ms (table move)
17-03-17 18:27:12.538 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173445 mm (DAC = 37889)
17-03-17 18:27:12.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36293
17-03-17 18:27:12.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:27:12.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.548 -07 000000547 INF: FPGA: Recv ZSGSRD 36294
17-03-17 18:27:12.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.558 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.558 -07 000000424 INF: FPGA: Recv ZSGSRD 36287
17-03-17 18:27:12.568 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.568 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36292
17-03-17 18:27:12.578 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.578 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.578 -07 000000482 INF: FPGA: Recv ZSGSRD 36292
17-03-17 18:27:12.588 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.588 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.588 -07 000000462 INF: FPGA: Recv ZSGSRD 36291
17-03-17 18:27:12.598 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.598 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.598 -07 000000547 INF: FPGA: Recv ZSGSRD 36298
17-03-17 18:27:12.608 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.608 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.608 -07 000000480 INF: FPGA: Recv ZSGSRD 36289
17-03-17 18:27:12.618 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.618 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.618 -07 000000593 INF: FPGA: Recv ZSGSRD 36293
17-03-17 18:27:12.628 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.628 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:12.628 -07 000000462 INF: FPGA: Recv ZSGSRD 36290
17-03-17 18:27:12.638 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.638 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:12.638 -07 000000547 INF: FPGA: Recv ZPIEZORD 32415
17-03-17 18:27:12.648 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:12.648 -07 000000012 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.6 V.
17-03-17 18:27:12.648 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36292 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36292 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36287 (-172.6 uncal um), Max = 36298 (-172.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:27:12.648 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36292, posNoise = 6, negNoise = 5
17-03-17 18:27:12.648 -07 000000012 INF: Z Motor: After move to -0.173445, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:12.648 -07 000000012 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:27:12.648 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:12.698 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:27:12.698 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:12.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:12.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:12.708 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:12.708 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:12.708 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:12.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:12.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:12.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:12.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:12.708 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:12.718 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:27:12.718 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:27:12.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:12.768 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:12.968 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:12.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:12.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:12.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1479096648, 0x0, 559484976) start.
17-03-17 18:27:13.008 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:13.008 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:13.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:27:13.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1479096648, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:27:13.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:13.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:13.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:27:13.108 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:13.108 -07 000000431 INF: Autofocus start
17-03-17 18:27:13.108 -07 000000431 INF: MeasureProfile start
17-03-17 18:27:13.118 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:13.118 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:13.118 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:13.118 -07 000000431 INF: MeasureProfile done
17-03-17 18:27:13.118 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:27:13.118 -07 000000431 INF: Autofocus finished
17-03-17 18:27:13.318 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:13.318 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:13.318 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173470859059924. ----------
17-03-17 18:27:13.318 -07 000000610 INF: Cycle	13	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:13.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36421, sync = True, waitForSettling = True)
17-03-17 18:27:13.328 -07 000000610 INF: Z Motor: Moving to -0.166725 mm, started at -0.173471 mm, distance = 6.75 um
17-03-17 18:27:13.328 -07 000000610 INF: FPGA: Xmit ZDACW 36421\n [Z Motor]
17-03-17 18:27:13.328 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:27:13.338 -07 000000610 INF: FPGA: 'ZDACW 36421' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:13.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:13.338 -07 000000424 INF: FPGA: Recv ZDACR 36421
17-03-17 18:27:13.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:13.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.498 -07 000000475 INF: FPGA: Recv ZSGSRD 35249
17-03-17 18:27:13.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35248
17-03-17 18:27:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35244
17-03-17 18:27:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.528 -07 000000424 INF: FPGA: Recv ZSGSRD 35242
17-03-17 18:27:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35245
17-03-17 18:27:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.548 -07 000000012 INF: FPGA: Recv ZSGSRD 35243
17-03-17 18:27:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.558 -07 000000561 INF: FPGA: Recv ZSGSRD 35246
17-03-17 18:27:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.568 -07 000000424 INF: FPGA: Recv ZSGSRD 35242
17-03-17 18:27:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.578 -07 000000475 INF: FPGA: Recv ZSGSRD 35241
17-03-17 18:27:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:13.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35247
17-03-17 18:27:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:13.598 -07 000000462 INF: FPGA: Recv ZPIEZORD 30965
17-03-17 18:27:13.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:13.608 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V.
17-03-17 18:27:13.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35245 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35244 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35241 (-165.9 uncal um), Max = 35249 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:27:13.608 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35245, posNoise = 4, negNoise = 4
17-03-17 18:27:13.608 -07 000000610 INF: Z Motor: After move to -0.166725, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:13.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:27:13.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:13.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:13.608 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:13.608 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:13.608 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:13.608 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:13.608 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:13.608 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:13.608 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:13.608 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:13.608 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:13.608 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:13.618 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:13.618 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:13.618 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:13.618 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:13.628 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:27:13.628 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:27:13.628 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:27:13.628 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:27:13.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36598 150\n [Camera]
17-03-17 18:27:13.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:14.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:14.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:14.228 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:14.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:14.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:14.238 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:14.238 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:14.238 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:27:14.238 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:14.238 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:27:14.418 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36598 778
17-03-17 18:27:14.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:14.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:27:14.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:27:14.628 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:14.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:27:14.628 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:27:14.628 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:14.638 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:14.638 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:27:14.638 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:14.648 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:27:14.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:14.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:14.758 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:14.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:14.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:27:14.768 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:14.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:14.768 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:14.768 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:14.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:27:14.948 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:27:14.948 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:14.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36598 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:27:14.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:27:14.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.1667447089475. ------
17-03-17 18:27:14.958 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:14.958 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17334 mm
17-03-17 18:27:14.958 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:14.968 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:27:14.968 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 18:27:14.968 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:14.968 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:27:14.968 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37867, sync = True, waitForSettling = False)
17-03-17 18:27:14.968 -07 000000415 INF: Z Motor: Moving to -0.173344 mm, started at -0.166745 mm, distance = -6.60 um
17-03-17 18:27:14.978 -07 000000415 INF: FPGA: Xmit ZDACW 37867\n [Z Motor]
17-03-17 18:27:14.978 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:27:14.988 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:14.988 -07 000000415 INF: FPGA: 'ZDACW 37867' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:27:14.988 -07 000000547 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:27:14.998 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:14.998 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:27:14.998 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:14.998 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:14.998 -07 000000561 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:27:15.008 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:15.008 -07 000000382 INF: FPGA: Recv ZDACR 37867
17-03-17 18:27:15.018 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:15.018 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:15.018 -07 000000415 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:27:15.138 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:27:15.138 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:27:15.138 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:15.148 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:27:15.148 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:27:15.148 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:15.148 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:15.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:27:15.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:27:15.158 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:27:15.198 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:15.198 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall
17-03-17 18:27:15.288 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.996267,
17-03-17 18:27:15.388 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:27:15.388 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:27:15.438 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:15.438 -07 000000547 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:27:15.448 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:15.448 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:15.448 -07 000000561 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 18:27:15.448 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 18:27:16.398 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:16.398 -07 000000415 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:27:16.408 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:16.408 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:16.428 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:16.428 -07 000000561 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:16.428 -07 000000561 INF: Y Motor: Moved to 73.1758 after 1460 ms (table move)
17-03-17 18:27:16.428 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173344 mm (DAC = 37867)
17-03-17 18:27:16.428 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.428 -07 000000482 INF: FPGA: Recv ZSGSRD 36277
17-03-17 18:27:16.438 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:27:16.438 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.438 -07 000000502 INF: FPGA: Recv ZSGSRD 36268
17-03-17 18:27:16.448 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.448 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.448 -07 000000626 INF: FPGA: Recv ZSGSRD 36276
17-03-17 18:27:16.458 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.458 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.458 -07 000000561 INF: FPGA: Recv ZSGSRD 36280
17-03-17 18:27:16.468 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.468 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.468 -07 000000482 INF: FPGA: Recv ZSGSRD 36277
17-03-17 18:27:16.478 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.478 -07 000000561 INF: FPGA: Recv ZSGSRD 36276
17-03-17 18:27:16.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.488 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.488 -07 000000547 INF: FPGA: Recv ZSGSRD 36272
17-03-17 18:27:16.498 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.498 -07 000000502 INF: FPGA: Recv ZSGSRD 36271
17-03-17 18:27:16.508 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.508 -07 000000547 INF: FPGA: Recv ZSGSRD 36269
17-03-17 18:27:16.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:16.518 -07 000000502 INF: FPGA: Recv ZSGSRD 36277
17-03-17 18:27:16.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.528 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:16.528 -07 000000482 INF: FPGA: Recv ZPIEZORD 32385
17-03-17 18:27:16.538 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:16.538 -07 000000429 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.6 V.
17-03-17 18:27:16.538 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36274 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36276 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36268 (-172.4 uncal um), Max = 36280 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:16.538 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36274, posNoise = 6, negNoise = 6
17-03-17 18:27:16.538 -07 000000429 INF: Z Motor: After move to -0.173344, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:16.538 -07 000000429 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-17 18:27:16.538 -07 000000429 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:16.588 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-17 18:27:16.588 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:16.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:16.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:16.588 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:16.588 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:16.588 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:16.588 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:16.588 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:16.588 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:16.588 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:16.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:16.598 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:16.608 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:27:16.608 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:27:16.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:16.658 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:16.858 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:16.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:16.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:16.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107365536, 0x0, 559484976) start.
17-03-17 18:27:16.898 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:16.898 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:16.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 18:27:16.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107365536, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:27:16.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:16.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:16.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:27:16.998 -07 000000424 INF: Autofocus start
17-03-17 18:27:16.998 -07 000000424 INF: MeasureProfile start
17-03-17 18:27:16.998 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:16.998 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:17.008 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:17.008 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:17.008 -07 000000424 INF: MeasureProfile done
17-03-17 18:27:17.008 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:27:17.008 -07 000000424 INF: Autofocus finished
17-03-17 18:27:17.208 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:17.208 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 18:27:17.208 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173355223241372. ----------
17-03-17 18:27:17.218 -07 000000610 INF: Cycle	13	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:17.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-17 18:27:17.218 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173355 mm, distance = 6.89 um
17-03-17 18:27:17.218 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-17 18:27:17.218 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:27:17.228 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:17.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:17.228 -07 000000482 INF: FPGA: Recv ZDACR 36364
17-03-17 18:27:17.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:27:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.398 -07 000000482 INF: FPGA: Recv ZSGSRD 35202
17-03-17 18:27:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.408 -07 000000561 INF: FPGA: Recv ZSGSRD 35198
17-03-17 18:27:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.418 -07 000000424 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:27:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:27:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.438 -07 000000382 INF: FPGA: Recv ZSGSRD 35200
17-03-17 18:27:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.448 -07 000000626 INF: FPGA: Recv ZSGSRD 35200
17-03-17 18:27:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.458 -07 000000547 INF: FPGA: Recv ZSGSRD 35203
17-03-17 18:27:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35203
17-03-17 18:27:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:17.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35202
17-03-17 18:27:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:17.488 -07 000000626 INF: FPGA: Recv ZPIEZORD 30947
17-03-17 18:27:17.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:17.498 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-17 18:27:17.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35202 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35202 (-165.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35198 (-165.6 uncal um), Max = 35205 (-165.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:27:17.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35202, posNoise = 3, negNoise = 4
17-03-17 18:27:17.498 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:17.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:27:17.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:17.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:17.498 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:17.498 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:17.498 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:17.498 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:17.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:17.498 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:17.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:17.498 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:17.498 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:17.498 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:17.498 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:17.498 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:17.498 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:17.498 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:17.518 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:27:17.518 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:27:17.518 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:27:17.518 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:27:17.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36541 150\n [Camera]
17-03-17 18:27:17.738 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:18.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:18.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:18.128 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:18.128 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:18.128 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1117636312, 0x0, 391868352) start.
17-03-17 18:27:18.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:18.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:18.128 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:18.248 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:18.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:27:18.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36541 778
17-03-17 18:27:18.468 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:18.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1117636312, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:27:18.508 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:27:18.508 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:18.508 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:18.508 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:27:18.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:27:18.628 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:27:18.628 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:18.628 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:27:18.638 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 18:27:18.658 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:18.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:18.658 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:18.658 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:18.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:18.658 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:18.668 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:18.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1397981344, 0x0, 418435064) start.
17-03-17 18:27:18.668 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:18.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1071943272, 0x0, 391868352) start.
17-03-17 18:27:18.848 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:27:18.848 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:18.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36541 150' command took 2 ms to send, 1307 ms to get response, and 1331 ms overall
17-03-17 18:27:18.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:27:18.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166468467825404. ------
17-03-17 18:27:18.858 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:18.858 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17276 mm
17-03-17 18:27:18.858 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:18.858 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:18.858 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:27:18.858 -07 000000502 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 18:27:18.858 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37739, sync = True, waitForSettling = False)
17-03-17 18:27:18.858 -07 000000415 INF: Z Motor: Moving to -0.172758 mm, started at -0.166468 mm, distance = -6.29 um
17-03-17 18:27:18.868 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:18.868 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:18.878 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:18.878 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:27:18.888 -07 000000415 INF: FPGA: Xmit ZDACW 37739\n [Z Motor]
17-03-17 18:27:18.888 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:27:18.888 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:18.888 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:27:18.888 -07 000000502 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:18.888 -07 000000502 INF: Y Motor: Moving 1354 steps-34
17-03-17 18:27:18.898 -07 000000415 INF: FPGA: 'ZDACW 37739' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:27:18.898 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:18.908 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:18.908 -07 000000431 INF: FPGA: Recv ZDACR 37739
17-03-17 18:27:18.918 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:27:18.918 -07 000000415 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:27:19.068 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1397981344, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:27:19.068 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:27:19.068 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:19.068 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1071943272, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:27:19.068 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:27:19.068 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:19.068 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:19.068 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:27:19.068 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:27:19.068 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:27:19.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:27:19.078 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:27:19.268 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:27:19.268 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:27:19.298 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:19.298 -07 000000476 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:27:19.308 -07 000000502 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:19.308 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:19.308 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:27:19.308 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.200 mm/sec
17-03-17 18:27:20.258 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:20.258 -07 000000431 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:27:20.268 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.268 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:20.278 -07 000000502 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:20.278 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:20.278 -07 000000502 INF: Y Motor: Moved to 74.0083 after 1416 ms (table move)
17-03-17 18:27:20.278 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172758 mm (DAC = 37739)
17-03-17 18:27:20.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36186
17-03-17 18:27:20.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:27:20.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.288 -07 000000476 INF: FPGA: Recv ZSGSRD 36187
17-03-17 18:27:20.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:20.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:27:20.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36179
17-03-17 18:27:20.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.318 -07 000000626 INF: FPGA: Recv ZSGSRD 36179
17-03-17 18:27:20.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.338 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36186
17-03-17 18:27:20.348 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:27:20.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.348 -07 000000547 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:27:20.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.358 -07 000000482 INF: FPGA: Recv ZSGSRD 36179
17-03-17 18:27:20.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.368 -07 000000626 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:27:20.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:20.378 -07 000000547 INF: FPGA: Recv ZSGSRD 36188
17-03-17 18:27:20.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.388 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:20.388 -07 000000502 INF: FPGA: Recv ZPIEZORD 32279
17-03-17 18:27:20.398 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:20.398 -07 000000424 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.6 V.
17-03-17 18:27:20.398 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36183 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36182 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36179 (-171.9 uncal um), Max = 36188 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:27:20.398 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36183, posNoise = 5, negNoise = 4
17-03-17 18:27:20.398 -07 000000424 INF: Z Motor: After move to -0.172758, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:20.398 -07 000000424 INF: Z Motor: Settle wait time = 1419 ms, measure time = 112 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:27:20.398 -07 000000424 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:20.438 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 18:27:20.438 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:20.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:20.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:20.438 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:20.438 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:20.438 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:20.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:20.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:20.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:20.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:20.448 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:20.458 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:27:20.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:27:20.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:20.508 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:20.648 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.979922,
17-03-17 18:27:20.708 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:20.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:20.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:20.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1450278672, 0x0, 559484976) start.
17-03-17 18:27:20.748 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:20.748 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:20.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 18:27:20.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1450278672, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:27:20.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:20.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:27:20.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:27:20.848 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:20.848 -07 000000431 INF: Autofocus start
17-03-17 18:27:20.848 -07 000000431 INF: MeasureProfile start
17-03-17 18:27:20.978 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:20.978 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 18:27:20.978 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:20.988 -07 000000431 INF: MeasureProfile done
17-03-17 18:27:20.988 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:27:20.988 -07 000000431 INF: Autofocus finished
17-03-17 18:27:21.188 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:21.188 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 18:27:21.188 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172770619936472. ----------
17-03-17 18:27:21.188 -07 000000610 INF: Cycle	13	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:21.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36272, sync = True, waitForSettling = True)
17-03-17 18:27:21.188 -07 000000610 INF: Z Motor: Moving to -0.166043 mm, started at -0.172771 mm, distance = 6.73 um
17-03-17 18:27:21.188 -07 000000610 INF: FPGA: Xmit ZDACW 36272\n [Z Motor]
17-03-17 18:27:21.198 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:27:21.198 -07 000000610 INF: FPGA: 'ZDACW 36272' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:27:21.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:21.198 -07 000000415 INF: FPGA: Recv ZDACR 36272
17-03-17 18:27:21.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:21.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:21.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.358 -07 000000415 INF: FPGA: Recv ZSGSRD 35135
17-03-17 18:27:21.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.368 -07 000000415 INF: FPGA: Recv ZSGSRD 35138
17-03-17 18:27:21.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.378 -07 000000415 INF: FPGA: Recv ZSGSRD 35135
17-03-17 18:27:21.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35139
17-03-17 18:27:21.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.398 -07 000000431 INF: FPGA: Recv ZSGSRD 35131
17-03-17 18:27:21.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.408 -07 000000431 INF: FPGA: Recv ZSGSRD 35139
17-03-17 18:27:21.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.418 -07 000000415 INF: FPGA: Recv ZSGSRD 35139
17-03-17 18:27:21.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.428 -07 000000415 INF: FPGA: Recv ZSGSRD 35141
17-03-17 18:27:21.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.438 -07 000000626 INF: FPGA: Recv ZSGSRD 35141
17-03-17 18:27:21.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:21.448 -07 000000431 INF: FPGA: Recv ZSGSRD 35132
17-03-17 18:27:21.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:21.458 -07 000000431 INF: FPGA: Recv ZPIEZORD 30868
17-03-17 18:27:21.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:21.468 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.535 V. Piezo Error = -9.4 V.
17-03-17 18:27:21.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35137 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35138 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35131 (-165.1 uncal um), Max = 35141 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:21.468 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35137, posNoise = 4, negNoise = 6
17-03-17 18:27:21.468 -07 000000610 INF: Z Motor: After move to -0.166043, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:21.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 18:27:21.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:21.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:21.468 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:21.468 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:21.468 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:21.468 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:21.468 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:21.468 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:27:21.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:21.468 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:21.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:21.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:21.478 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:27:21.478 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:21.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 9 ms.
17-03-17 18:27:21.478 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:21.488 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:27:21.488 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:27:21.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:27:21.488 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:27:21.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36448 150\n [Camera]
17-03-17 18:27:21.588 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:21.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:21.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:22.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:22.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:22.088 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:22.088 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:22.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:22.088 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:22.098 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:22.098 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 18:27:22.098 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:22.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:27:22.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36448 778
17-03-17 18:27:22.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:22.488 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:27:22.488 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:27:22.488 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:22.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:27:22.488 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:27:22.488 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:22.488 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:22.488 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:27:22.488 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:22.498 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:27:22.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:22.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:22.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:22.628 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:22.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:22.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:22.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:22.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:27:22.628 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:22.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:27:22.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:27:22.808 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:22.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36448 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 18:27:22.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:27:22.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.16605089403619. ------
17-03-17 18:27:22.818 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17241 mm
17-03-17 18:27:22.818 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:22.818 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:22.818 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:27:22.818 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 18:27:22.818 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37663, sync = True, waitForSettling = False)
17-03-17 18:27:22.828 -07 000000626 INF: Z Motor: Moving to -0.172410 mm, started at -0.166051 mm, distance = -6.36 um
17-03-17 18:27:22.828 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:22.828 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:27:22.828 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:22.828 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:27:22.838 -07 000000415 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:27:22.838 -07 000000415 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:22.838 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:22.838 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:22.838 -07 000000415 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:27:22.848 -07 000000626 INF: FPGA: Xmit ZDACW 37663\n [Z Motor]
17-03-17 18:27:22.848 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:27:22.858 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:22.858 -07 000000626 INF: FPGA: 'ZDACW 37663' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:22.868 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:22.868 -07 000000480 INF: FPGA: Recv ZDACR 37663
17-03-17 18:27:22.878 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:27:22.878 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:27:23.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:27:23.008 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:27:23.008 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:23.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:27:23.008 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:27:23.008 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:23.018 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:23.018 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:27:23.018 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:23.028 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:27:23.038 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:23.038 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:27:23.228 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:27:23.228 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:27:23.248 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:23.258 -07 000000480 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:27:23.258 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:27:23.258 -07 000000415 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:23.258 -07 000000415 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 18:27:23.258 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.143 mm/sec
17-03-17 18:27:24.208 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:24.208 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:27:24.218 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.218 -07 000000415 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:24.228 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:24.228 -07 000000415 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:24.228 -07 000000415 INF: Y Motor: Moved to 74.8320 after 1407 ms (table move)
17-03-17 18:27:24.228 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172410 mm (DAC = 37663)
17-03-17 18:27:24.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.238 -07 000000593 INF: FPGA: Recv ZSGSRD 36128
17-03-17 18:27:24.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:27:24.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:27:24.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:24.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.248 -07 000000547 INF: FPGA: Recv ZSGSRD 36140
17-03-17 18:27:24.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.258 -07 000000431 INF: FPGA: Recv ZSGSRD 36128
17-03-17 18:27:24.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36121
17-03-17 18:27:24.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.278 -07 000000424 INF: FPGA: Recv ZSGSRD 36124
17-03-17 18:27:24.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36128
17-03-17 18:27:24.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.298 -07 000000431 INF: FPGA: Recv ZSGSRD 36132
17-03-17 18:27:24.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.308 -07 000000482 INF: FPGA: Recv ZSGSRD 36127
17-03-17 18:27:24.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:24.318 -07 000000424 INF: FPGA: Recv ZSGSRD 36131
17-03-17 18:27:24.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.328 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:24.328 -07 000000626 INF: FPGA: Recv ZPIEZORD 32235
17-03-17 18:27:24.338 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:24.338 -07 000000608 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.747 V. Piezo Error = -8.6 V.
17-03-17 18:27:24.338 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36130 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36128 (-171.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36121 (-171.5 uncal um), Max = 36140 (-171.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:27:24.338 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36130, posNoise = 10, negNoise = 9
17-03-17 18:27:24.338 -07 000000608 INF: Z Motor: After move to -0.172410, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:24.338 -07 000000608 INF: Z Motor: Settle wait time = 1408 ms, measure time = 102 ms (allowed 150 ms), total time = 1510 ms
17-03-17 18:27:24.338 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:24.388 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1565 ms
17-03-17 18:27:24.388 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:24.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:24.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:24.388 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:24.388 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:24.388 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:24.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:24.398 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:24.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:24.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:24.398 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:24.408 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:27:24.408 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:27:24.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:24.458 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:24.658 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:24.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:24.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:24.768 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:24.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 18:27:24.768 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:24.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 351 ms to get response, and 354 ms overall
17-03-17 18:27:24.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:27:24.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:24.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:24.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 232 ms.
17-03-17 18:27:24.968 -07 000000608 INF: Autofocus start
17-03-17 18:27:24.968 -07 000000608 INF: MeasureProfile start
17-03-17 18:27:24.968 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:24.968 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:24.978 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:24.978 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:24.978 -07 000000608 INF: MeasureProfile done
17-03-17 18:27:24.978 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:27:24.978 -07 000000608 INF: Autofocus finished
17-03-17 18:27:25.178 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:25.178 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:27:25.178 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172430136692958. ----------
17-03-17 18:27:25.188 -07 000000610 INF: Cycle	13	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:25.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36196, sync = True, waitForSettling = True)
17-03-17 18:27:25.188 -07 000000610 INF: Z Motor: Moving to -0.165695 mm, started at -0.172430 mm, distance = 6.74 um
17-03-17 18:27:25.188 -07 000000610 INF: FPGA: Xmit ZDACW 36196\n [Z Motor]
17-03-17 18:27:25.188 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:27:25.198 -07 000000610 INF: FPGA: 'ZDACW 36196' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:25.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:25.198 -07 000000480 INF: FPGA: Recv ZDACR 36196
17-03-17 18:27:25.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:25.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35084
17-03-17 18:27:25.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:25.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.368 -07 000000382 INF: FPGA: Recv ZSGSRD 35084
17-03-17 18:27:25.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.378 -07 000000382 INF: FPGA: Recv ZSGSRD 35088
17-03-17 18:27:25.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35080
17-03-17 18:27:25.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.398 -07 000000593 INF: FPGA: Recv ZSGSRD 35085
17-03-17 18:27:25.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.408 -07 000000547 INF: FPGA: Recv ZSGSRD 35084
17-03-17 18:27:25.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.418 -07 000000593 INF: FPGA: Recv ZSGSRD 35087
17-03-17 18:27:25.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.428 -07 000000593 INF: FPGA: Recv ZSGSRD 35090
17-03-17 18:27:25.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.438 -07 000000424 INF: FPGA: Recv ZSGSRD 35079
17-03-17 18:27:25.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:25.448 -07 000000593 INF: FPGA: Recv ZSGSRD 35083
17-03-17 18:27:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:25.458 -07 000000424 INF: FPGA: Recv ZPIEZORD 30819
17-03-17 18:27:25.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:25.468 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.4 V.
17-03-17 18:27:25.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35084 (-164.8 uncal um), Error = 0.8 uncal um, Median = 35084 (-164.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35079 (-164.8 uncal um), Max = 35090 (-164.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:27:25.468 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35084, posNoise = 6, negNoise = 5
17-03-17 18:27:25.468 -07 000000610 INF: Z Motor: After move to -0.165695, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:25.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:27:25.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:25.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:25.468 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:25.468 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:25.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:25.468 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:25.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:25.468 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:25.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:25.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:25.468 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:25.468 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:25.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:25.478 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:25.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:27:25.478 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:25.488 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:27:25.488 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:27:25.488 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:27:25.488 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:27:25.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36372 150\n [Camera]
17-03-17 18:27:25.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:26.008 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.952638,
17-03-17 18:27:26.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:26.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:26.088 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:26.088 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:26.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:26.088 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:26.088 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:26.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 18:27:26.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:26.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:27:26.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36372 778
17-03-17 18:27:26.428 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:26.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:27:26.468 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:27:26.468 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:26.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:27:26.468 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:26.468 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:27:26.468 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:27:26.468 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:26.478 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:26.488 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:27:26.588 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:26.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:26.618 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1119
17-03-17 18:27:26.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1119
17-03-17 18:27:26.618 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:26.618 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1119
17-03-17 18:27:26.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1119
17-03-17 18:27:26.628 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:26.628 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:26.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:27:26.628 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:26.628 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:27:26.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:27:26.808 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:26.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36372 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:27:27.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:27:27.008 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:27:27.008 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:27.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:27:27.018 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:27:27.018 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:27.018 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:27:27.018 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:27.018 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:27:27.018 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:27:27.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:27:27.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:27:27.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:27:27.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:27:27.108 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:27:27.108 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:27:27.108 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 18:27:27.118 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:27.118 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:27:27.618 -07 000000424 INF: FPGA: Recv EMIN
17-03-17 18:27:27.618 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 503 ms overall
17-03-17 18:27:27.618 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:27:27.618 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 18:27:27.628 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:27.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:27.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165710410792676. ------
17-03-17 18:27:27.628 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:27.628 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14015 mm
17-03-17 18:27:27.628 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:27.628 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:27.638 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:27.638 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:27:27.638 -07 000000593 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 18:27:27.638 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:27.638 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30615, sync = True, waitForSettling = False)
17-03-17 18:27:27.638 -07 000000429 INF: Z Motor: Moving to -0.140146 mm, started at -0.165710 mm, distance = 25.56 um
17-03-17 18:27:27.648 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:27.648 -07 000000476 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:27:27.658 -07 000000429 INF: FPGA: Xmit ZDACW 30615\n [Z Motor]
17-03-17 18:27:27.658 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:27:27.658 -07 000000593 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:27.658 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:27:27.658 -07 000000593 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:27:27.658 -07 000000593 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:27:27.668 -07 000000429 INF: FPGA: 'ZDACW 30615' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:27:27.668 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:27.668 -07 000000626 INF: FPGA: Recv ZDACR 30615
17-03-17 18:27:27.678 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:27.678 -07 000000429 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:27:27.678 -07 000000593 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:27:27.838 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:27.838 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:27:29.298 -07 000000547 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 18:27:29.298 -07 000000593 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1645 ms overall
17-03-17 18:27:29.298 -07 000000593 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:27:29.308 -07 000000593 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:27:29.308 -07 000000593 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 18:27:31.368 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.988112,
17-03-17 18:27:31.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:32.158 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:32.158 -07 000000429 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:27:32.168 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:32.168 -07 000000593 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:32.198 -07 000000593 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:32.198 -07 000000593 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:27:32.198 -07 000000593 INF: Y Motor: Moved to 59.9116 after 4561 ms
17-03-17 18:27:32.198 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140146 mm (DAC = 30615)
17-03-17 18:27:32.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.198 -07 000000593 INF: FPGA: Recv ZSGSRD 31110
17-03-17 18:27:32.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:32.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.208 -07 000000593 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:27:32.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.218 -07 000000593 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:27:32.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.228 -07 000000618 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:27:32.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.238 -07 000000618 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:27:32.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.248 -07 000000618 INF: FPGA: Recv ZSGSRD 31114
17-03-17 18:27:32.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.258 -07 000000618 INF: FPGA: Recv ZSGSRD 31105
17-03-17 18:27:32.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.268 -07 000000618 INF: FPGA: Recv ZSGSRD 31108
17-03-17 18:27:32.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.278 -07 000000618 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:27:32.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:32.288 -07 000000618 INF: FPGA: Recv ZSGSRD 31109
17-03-17 18:27:32.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.298 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:32.298 -07 000000462 INF: FPGA: Recv ZPIEZORD 26646
17-03-17 18:27:32.308 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:32.308 -07 000000475 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -9.8 V.
17-03-17 18:27:32.308 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31107 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31107 (-139.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31103 (-139.3 uncal um), Max = 31114 (-139.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:27:32.308 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31107, posNoise = 7, negNoise = 4
17-03-17 18:27:32.308 -07 000000475 INF: Z Motor: After move to -0.140146, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:32.308 -07 000000475 INF: Z Motor: Settle wait time = 4564 ms, measure time = 105 ms (allowed 150 ms), total time = 4669 ms
17-03-17 18:27:32.308 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:32.358 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4724 ms
17-03-17 18:27:32.358 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:32.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:32.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:32.358 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:32.358 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:32.358 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:32.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:32.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:32.358 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:27:32.388 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:27:32.388 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:32.388 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:32.388 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:32.398 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:27:32.398 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 18:27:32.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:32.448 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:32.648 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:32.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:32.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:32.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 18:27:32.688 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:32.688 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:32.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:27:32.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:27:32.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:32.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:32.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 18:27:32.788 -07 000000475 INF: Image SNR check: start
17-03-17 18:27:32.788 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:32.788 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:32.798 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:32.798 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:32.798 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=73.71]
17-03-17 18:27:32.798 -07 000000475 INF: Autofocus start
17-03-17 18:27:32.798 -07 000000475 INF: MeasureProfile start
17-03-17 18:27:32.818 -07 000000475 INF: MeasureProfile done
17-03-17 18:27:32.818 -07 000000475 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:27:32.818 -07 000000475 INF: Autofocus finished
17-03-17 18:27:32.998 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:32.998 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:32.998 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140161319104893. ----------
17-03-17 18:27:32.998 -07 000000610 INF: Cycle	13	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:33.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29110, sync = True, waitForSettling = True)
17-03-17 18:27:33.008 -07 000000610 INF: Z Motor: Moving to -0.133257 mm, started at -0.140161 mm, distance = 6.90 um
17-03-17 18:27:33.008 -07 000000610 INF: FPGA: Xmit ZDACW 29110\n [Z Motor]
17-03-17 18:27:33.008 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:27:33.018 -07 000000610 INF: FPGA: 'ZDACW 29110' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:33.018 -07 000000424 INF: FPGA: Recv ZDACR 29110
17-03-17 18:27:33.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.178 -07 000000480 INF: FPGA: Recv ZSGSRD 30034
17-03-17 18:27:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.188 -07 000000618 INF: FPGA: Recv ZSGSRD 30030
17-03-17 18:27:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.198 -07 000000480 INF: FPGA: Recv ZSGSRD 30028
17-03-17 18:27:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.208 -07 000000626 INF: FPGA: Recv ZSGSRD 30027
17-03-17 18:27:33.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.218 -07 000000480 INF: FPGA: Recv ZSGSRD 30029
17-03-17 18:27:33.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30036
17-03-17 18:27:33.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.238 -07 000000480 INF: FPGA: Recv ZSGSRD 30032
17-03-17 18:27:33.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.248 -07 000000618 INF: FPGA: Recv ZSGSRD 30038
17-03-17 18:27:33.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.258 -07 000000626 INF: FPGA: Recv ZSGSRD 30032
17-03-17 18:27:33.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:33.268 -07 000000618 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:27:33.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:33.278 -07 000000475 INF: FPGA: Recv ZPIEZORD 25487
17-03-17 18:27:33.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:33.288 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -10.0 V.
17-03-17 18:27:33.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30032 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30027 (-132.4 uncal um), Max = 30039 (-132.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:27:33.288 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 7, negNoise = 5
17-03-17 18:27:33.288 -07 000000610 INF: Z Motor: After move to -0.133257, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:33.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:27:33.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:33.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:33.288 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:33.288 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:33.288 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:33.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:33.288 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:33.288 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:33.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:33.288 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:33.288 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:33.288 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:27:33.298 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:33.298 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:33.308 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:27:33.308 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:27:33.308 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:27:33.308 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:33.318 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:33.318 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:33.328 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:27:33.328 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 18:27:33.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29286 150\n [Camera]
17-03-17 18:27:33.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:33.928 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:33.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:33.928 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:33.928 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:33.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:27:33.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:33.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:33.928 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:33.928 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:33.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:27:34.118 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29286 778
17-03-17 18:27:34.268 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:34.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:27:34.318 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:27:34.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:34.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:27:34.318 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:27:34.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:34.318 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:34.318 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:27:34.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:34.328 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:27:34.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:34.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:34.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:34.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:34.568 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:34.568 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:34.578 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:34.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:27:34.578 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:34.578 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:27:34.648 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:27:34.648 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:34.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29286 150' command took 2 ms to send, 1305 ms to get response, and 1318 ms overall
17-03-17 18:27:34.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:34.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.1332552910525. ------
17-03-17 18:27:34.658 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:34.658 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13971 mm
17-03-17 18:27:34.658 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:34.658 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:34.658 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30519, sync = True, waitForSettling = False)
17-03-17 18:27:34.658 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:27:34.658 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:27:34.658 -07 000000462 INF: Z Motor: Moving to -0.139707 mm, started at -0.133255 mm, distance = -6.45 um
17-03-17 18:27:34.668 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:34.668 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:34.668 -07 000000626 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:27:34.678 -07 000000462 INF: FPGA: Xmit ZDACW 30519\n [Z Motor]
17-03-17 18:27:34.678 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:27:34.678 -07 000000618 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:34.678 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:34.678 -07 000000618 INF: Y Motor: Moving 1330 steps2
17-03-17 18:27:34.678 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:27:34.688 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:34.688 -07 000000462 INF: FPGA: 'ZDACW 30519' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:27:34.698 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:34.708 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:34.708 -07 000000547 INF: FPGA: Recv ZDACR 30519
17-03-17 18:27:34.718 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:34.718 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:27:34.888 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:34.888 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:27:34.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:27:34.958 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:27:34.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:34.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:34.958 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:27:34.958 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:27:34.958 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:34.958 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:34.958 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:27:34.968 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:27:35.068 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:27:35.068 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:27:35.108 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:35.108 -07 000000593 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:27:35.118 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:35.118 -07 000000618 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:35.118 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:27:35.118 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:27:36.068 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:36.068 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:27:36.078 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:36.078 -07 000000618 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:36.098 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:36.098 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:36.098 -07 000000618 INF: Y Motor: Moved to 60.7334 after 1437 ms (table move)
17-03-17 18:27:36.098 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139707 mm (DAC = 30519)
17-03-17 18:27:36.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.098 -07 000000593 INF: FPGA: Recv ZSGSRD 31033
17-03-17 18:27:36.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:36.108 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.108 -07 000000626 INF: FPGA: Recv ZSGSRD 31026
17-03-17 18:27:36.118 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.118 -07 000000502 INF: FPGA: Recv ZSGSRD 31034
17-03-17 18:27:36.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.128 -07 000000424 INF: FPGA: Recv ZSGSRD 31044
17-03-17 18:27:36.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.138 -07 000000547 INF: FPGA: Recv ZSGSRD 31044
17-03-17 18:27:36.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.148 -07 000000502 INF: FPGA: Recv ZSGSRD 31040
17-03-17 18:27:36.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.158 -07 000000618 INF: FPGA: Recv ZSGSRD 31037
17-03-17 18:27:36.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.168 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.168 -07 000000476 INF: FPGA: Recv ZSGSRD 31037
17-03-17 18:27:36.178 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.178 -07 000000618 INF: FPGA: Recv ZSGSRD 31032
17-03-17 18:27:36.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:36.188 -07 000000593 INF: FPGA: Recv ZSGSRD 31030
17-03-17 18:27:36.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.198 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:36.198 -07 000000480 INF: FPGA: Recv ZPIEZORD 26813
17-03-17 18:27:36.208 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.208 -07 000000475 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -9.3 V.
17-03-17 18:27:36.208 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31036 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31036 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31026 (-138.8 uncal um), Max = 31044 (-139.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:27:36.208 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31036, posNoise = 8, negNoise = 10
17-03-17 18:27:36.208 -07 000000475 INF: Z Motor: After move to -0.139707, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:36.208 -07 000000475 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:27:36.208 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:36.258 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:27:36.258 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:36.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:36.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:36.258 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:36.258 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:36.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:36.258 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:36.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:27:36.268 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:36.268 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:36.268 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:36.278 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:27:36.278 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:27:36.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:36.328 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:36.528 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:36.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:36.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:36.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 18:27:36.568 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:36.568 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:36.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:27:36.598 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:36.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:27:36.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:36.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:36.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:27:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:36.668 -07 000000476 INF: Autofocus start
17-03-17 18:27:36.668 -07 000000476 INF: MeasureProfile start
17-03-17 18:27:36.668 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:36.668 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:36.678 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:36.678 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:36.678 -07 000000476 INF: MeasureProfile done
17-03-17 18:27:36.678 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:27:36.678 -07 000000476 INF: Autofocus finished
17-03-17 18:27:36.728 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.997626,
17-03-17 18:27:36.878 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:36.878 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:36.878 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139705200042828. ----------
17-03-17 18:27:36.878 -07 000000610 INF: Cycle	13	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:36.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29027, sync = True, waitForSettling = True)
17-03-17 18:27:36.888 -07 000000610 INF: Z Motor: Moving to -0.132877 mm, started at -0.139705 mm, distance = 6.83 um
17-03-17 18:27:36.888 -07 000000610 INF: FPGA: Xmit ZDACW 29027\n [Z Motor]
17-03-17 18:27:36.888 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:27:36.898 -07 000000610 INF: FPGA: 'ZDACW 29027' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:36.898 -07 000000462 INF: FPGA: Recv ZDACR 29027
17-03-17 18:27:36.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:36.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.058 -07 000000424 INF: FPGA: Recv ZSGSRD 29975
17-03-17 18:27:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.068 -07 000000618 INF: FPGA: Recv ZSGSRD 29973
17-03-17 18:27:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29976
17-03-17 18:27:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.088 -07 000000462 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:27:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.098 -07 000000424 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:27:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.108 -07 000000424 INF: FPGA: Recv ZSGSRD 29976
17-03-17 18:27:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.118 -07 000000424 INF: FPGA: Recv ZSGSRD 29968
17-03-17 18:27:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.128 -07 000000424 INF: FPGA: Recv ZSGSRD 29975
17-03-17 18:27:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.138 -07 000000424 INF: FPGA: Recv ZSGSRD 29972
17-03-17 18:27:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:37.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29976
17-03-17 18:27:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:37.158 -07 000000618 INF: FPGA: Recv ZPIEZORD 25468
17-03-17 18:27:37.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:37.168 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.9 V.
17-03-17 18:27:37.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29974 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29975 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29968 (-132.1 uncal um), Max = 29984 (-132.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:37.168 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29974, posNoise = 10, negNoise = 6
17-03-17 18:27:37.168 -07 000000610 INF: Z Motor: After move to -0.132877, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:37.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:27:37.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:37.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:37.168 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:37.168 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:37.168 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:37.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:37.168 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:37.168 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:37.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:27:37.168 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:37.168 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:37.168 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:37.168 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:27:37.168 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:37.178 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:37.178 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:37.178 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:27:37.178 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:27:37.178 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:27:37.178 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:27:37.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29204 150\n [Camera]
17-03-17 18:27:37.388 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:37.778 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:37.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:37.778 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:37.778 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:37.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:37.788 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:37.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:37.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2179038936, 0x0, 391868352) start.
17-03-17 18:27:37.898 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:37.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:27:37.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29204 778
17-03-17 18:27:38.118 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:27:38.278 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2179038936, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:27:38.278 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:27:38.278 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:38.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:38.288 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 18:27:38.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:27:38.288 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:27:38.288 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:38.288 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:38.298 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 18:27:38.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:38.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:38.318 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:38.318 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:38.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:38.318 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:38.318 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:38.318 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:27:38.318 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:38.318 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1456144144, 0x0, 418435064) start.
17-03-17 18:27:38.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:38.508 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:38.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29204 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:27:38.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:38.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132882686748278. ------
17-03-17 18:27:38.508 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:38.508 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13953 mm
17-03-17 18:27:38.508 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:38.508 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:38.518 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:38.518 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:38.518 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:27:38.518 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:27:38.518 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30480, sync = True, waitForSettling = False)
17-03-17 18:27:38.518 -07 000000424 INF: Z Motor: Moving to -0.139528 mm, started at -0.132883 mm, distance = -6.65 um
17-03-17 18:27:38.528 -07 000000424 INF: FPGA: Xmit ZDACW 30480\n [Z Motor]
17-03-17 18:27:38.528 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:27:38.538 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:38.538 -07 000000424 INF: FPGA: 'ZDACW 30480' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:27:38.538 -07 000000593 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:27:38.548 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:38.548 -07 000000502 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:38.548 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:38.548 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:38.548 -07 000000502 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:27:38.548 -07 000000547 INF: FPGA: Recv ZDACR 30480
17-03-17 18:27:38.558 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:27:38.558 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:27:38.558 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:38.718 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:38.718 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:38.718 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1456144144, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:27:38.718 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:27:38.718 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:38.718 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:27:38.718 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:27:38.718 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:38.728 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:27:38.728 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:38.728 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:27:38.738 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:27:38.928 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:27:38.928 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:27:38.978 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:38.978 -07 000000476 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:27:38.988 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:27:38.988 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:38.988 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:27:38.988 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.180 mm/sec
17-03-17 18:27:39.938 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:39.938 -07 000000438 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:27:39.948 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:39.948 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:39.968 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:39.968 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:39.968 -07 000000502 INF: Y Motor: Moved to 61.5645 after 1450 ms (table move)
17-03-17 18:27:39.968 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139528 mm (DAC = 30480)
17-03-17 18:27:39.968 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:39.968 -07 000000475 INF: FPGA: Recv ZSGSRD 31016
17-03-17 18:27:39.978 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:27:39.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:39.978 -07 000000502 INF: FPGA: Recv ZSGSRD 31011
17-03-17 18:27:39.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:39.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:39.988 -07 000000502 INF: FPGA: Recv ZSGSRD 31015
17-03-17 18:27:39.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:39.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:39.998 -07 000000475 INF: FPGA: Recv ZSGSRD 31013
17-03-17 18:27:40.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.008 -07 000000475 INF: FPGA: Recv ZSGSRD 31016
17-03-17 18:27:40.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.018 -07 000000502 INF: FPGA: Recv ZSGSRD 31009
17-03-17 18:27:40.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.028 -07 000000475 INF: FPGA: Recv ZSGSRD 31008
17-03-17 18:27:40.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.038 -07 000000502 INF: FPGA: Recv ZSGSRD 31005
17-03-17 18:27:40.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.048 -07 000000502 INF: FPGA: Recv ZSGSRD 31011
17-03-17 18:27:40.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.058 -07 000000547 INF: FPGA: Recv ZSGSRD 31021
17-03-17 18:27:40.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.068 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:40.068 -07 000000547 INF: FPGA: Recv ZPIEZORD 26827
17-03-17 18:27:40.078 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.078 -07 000000626 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -9.2 V.
17-03-17 18:27:40.078 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31012 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31012 (-138.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31005 (-138.7 uncal um), Max = 31021 (-138.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:27:40.078 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31012, posNoise = 9, negNoise = 7
17-03-17 18:27:40.078 -07 000000626 INF: Z Motor: After move to -0.139528, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:40.078 -07 000000626 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-17 18:27:40.078 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:40.128 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 18:27:40.128 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:40.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:40.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:40.128 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:40.128 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:40.128 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:40.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:40.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:40.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:40.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:40.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:40.148 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:27:40.148 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:27:40.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:40.188 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:40.388 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:40.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:40.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:40.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 18:27:40.428 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:40.428 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:40.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:27:40.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 18:27:40.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:40.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:40.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:27:40.538 -07 000000462 INF: Autofocus start
17-03-17 18:27:40.538 -07 000000462 INF: MeasureProfile start
17-03-17 18:27:40.538 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:40.538 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:40.548 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:40.548 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:40.548 -07 000000462 INF: MeasureProfile done
17-03-17 18:27:40.548 -07 000000462 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:27:40.548 -07 000000462 INF: Autofocus finished
17-03-17 18:27:40.748 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:40.748 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 18:27:40.748 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139551018951426. ----------
17-03-17 18:27:40.758 -07 000000610 INF: Cycle	13	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:40.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29021, sync = True, waitForSettling = True)
17-03-17 18:27:40.758 -07 000000610 INF: Z Motor: Moving to -0.132850 mm, started at -0.139551 mm, distance = 6.70 um
17-03-17 18:27:40.758 -07 000000610 INF: FPGA: Xmit ZDACW 29021\n [Z Motor]
17-03-17 18:27:40.758 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:27:40.768 -07 000000610 INF: FPGA: 'ZDACW 29021' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:40.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:40.768 -07 000000476 INF: FPGA: Recv ZDACR 29021
17-03-17 18:27:40.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.928 -07 000000475 INF: FPGA: Recv ZSGSRD 29969
17-03-17 18:27:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.938 -07 000000476 INF: FPGA: Recv ZSGSRD 29974
17-03-17 18:27:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.948 -07 000000475 INF: FPGA: Recv ZSGSRD 29963
17-03-17 18:27:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.958 -07 000000475 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:27:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.968 -07 000000475 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:27:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.978 -07 000000547 INF: FPGA: Recv ZSGSRD 29971
17-03-17 18:27:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.988 -07 000000547 INF: FPGA: Recv ZSGSRD 29968
17-03-17 18:27:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:40.998 -07 000000476 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:27:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:41.008 -07 000000547 INF: FPGA: Recv ZSGSRD 29968
17-03-17 18:27:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:41.018 -07 000000547 INF: FPGA: Recv ZSGSRD 29972
17-03-17 18:27:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:41.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:41.028 -07 000000547 INF: FPGA: Recv ZPIEZORD 25474
17-03-17 18:27:41.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:41.038 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.9 V.
17-03-17 18:27:41.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29969 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29968 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29963 (-132.0 uncal um), Max = 29974 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:41.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29969, posNoise = 5, negNoise = 6
17-03-17 18:27:41.038 -07 000000610 INF: Z Motor: After move to -0.132850, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:41.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:41.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:41.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:41.038 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:41.038 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:41.038 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:41.038 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:41.038 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:41.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:41.038 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:41.038 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:41.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:41.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:41.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:27:41.038 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:41.038 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:41.038 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:41.058 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:27:41.058 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:27:41.058 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:27:41.058 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:27:41.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29198 150\n [Camera]
17-03-17 18:27:41.258 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:41.598 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:41.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:41.658 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:41.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:41.658 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:41.658 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:41.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:27:41.658 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:41.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:41.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:41.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:41.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:27:41.848 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29198 778
17-03-17 18:27:41.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:42.028 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:27:42.028 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:27:42.028 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:42.038 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:27:42.038 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:27:42.038 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:42.038 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:42.038 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:27:42.038 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:42.048 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:27:42.088 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.000345,
17-03-17 18:27:42.188 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:42.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:42.188 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:42.188 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:42.188 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) start.
17-03-17 18:27:42.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:42.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:42.188 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:42.188 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:42.188 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) start.
17-03-17 18:27:42.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:27:42.378 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:42.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29198 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-17 18:27:42.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:42.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132850565687569. ------
17-03-17 18:27:42.388 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:42.388 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13927 mm
17-03-17 18:27:42.388 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:42.388 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30423, sync = True, waitForSettling = False)
17-03-17 18:27:42.388 -07 000000502 INF: Z Motor: Moving to -0.139268 mm, started at -0.132851 mm, distance = -6.42 um
17-03-17 18:27:42.388 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:42.388 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:27:42.388 -07 000000547 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:27:42.398 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:42.398 -07 000000502 INF: FPGA: Xmit ZDACW 30423\n [Z Motor]
17-03-17 18:27:42.398 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:27:42.408 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:42.408 -07 000000502 INF: FPGA: 'ZDACW 30423' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:27:42.408 -07 000000593 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:27:42.418 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:27:42.418 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:42.418 -07 000000547 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:42.418 -07 000000547 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:42.418 -07 000000547 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:27:42.428 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:42.428 -07 000000618 INF: FPGA: Recv ZDACR 30423
17-03-17 18:27:42.438 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:42.438 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:42.438 -07 000000502 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:27:42.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:27:42.578 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:27:42.578 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:42.578 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:42.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:27:42.578 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:27:42.578 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:42.588 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:42.588 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:27:42.588 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:27:42.618 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:42.618 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:27:42.808 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:27:42.808 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:27:42.848 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:42.848 -07 000000593 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:27:42.858 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:27:42.858 -07 000000547 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:42.858 -07 000000547 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:27:42.858 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:27:43.808 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:43.808 -07 000000561 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:27:43.818 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.818 -07 000000547 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:43.828 -07 000000547 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:43.828 -07 000000547 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:43.828 -07 000000547 INF: Y Motor: Moved to 62.3960 after 1443 ms (table move)
17-03-17 18:27:43.838 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139268 mm (DAC = 30423)
17-03-17 18:27:43.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.838 -07 000000424 INF: FPGA: Recv ZSGSRD 30977
17-03-17 18:27:43.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:43.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.848 -07 000000593 INF: FPGA: Recv ZSGSRD 30965
17-03-17 18:27:43.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.858 -07 000000431 INF: FPGA: Recv ZSGSRD 30966
17-03-17 18:27:43.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.868 -07 000000618 INF: FPGA: Recv ZSGSRD 30975
17-03-17 18:27:43.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.878 -07 000000431 INF: FPGA: Recv ZSGSRD 30972
17-03-17 18:27:43.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.888 -07 000000424 INF: FPGA: Recv ZSGSRD 30970
17-03-17 18:27:43.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.898 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.898 -07 000000547 INF: FPGA: Recv ZSGSRD 30965
17-03-17 18:27:43.908 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.908 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.908 -07 000000424 INF: FPGA: Recv ZSGSRD 30960
17-03-17 18:27:43.918 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.918 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.918 -07 000000608 INF: FPGA: Recv ZSGSRD 30966
17-03-17 18:27:43.928 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.928 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:43.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30967
17-03-17 18:27:43.938 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.938 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:43.938 -07 000000593 INF: FPGA: Recv ZPIEZORD 26818
17-03-17 18:27:43.948 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:43.948 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -9.1 V.
17-03-17 18:27:43.948 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30968 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30966 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30960 (-138.4 uncal um), Max = 30977 (-138.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:27:43.948 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30968, posNoise = 9, negNoise = 8
17-03-17 18:27:43.948 -07 000000462 INF: Z Motor: After move to -0.139268, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:43.948 -07 000000462 INF: Z Motor: Settle wait time = 1447 ms, measure time = 108 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:27:43.948 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:43.998 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:27:43.998 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:43.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:43.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:43.998 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:43.998 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:43.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:43.998 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:43.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:27:43.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:43.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:44.008 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:44.008 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:27:44.018 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:27:44.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:44.068 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:44.268 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:44.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:44.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:44.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 18:27:44.308 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:44.308 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:44.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 290 ms overall
17-03-17 18:27:44.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:27:44.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:44.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:44.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:27:44.408 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:44.408 -07 000000547 INF: Autofocus start
17-03-17 18:27:44.408 -07 000000547 INF: MeasureProfile start
17-03-17 18:27:44.408 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:44.418 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:44.418 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:44.418 -07 000000547 INF: MeasureProfile done
17-03-17 18:27:44.418 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:27:44.418 -07 000000547 INF: Autofocus finished
17-03-17 18:27:44.618 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:44.618 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:44.618 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139268353617188. ----------
17-03-17 18:27:44.618 -07 000000610 INF: Cycle	13	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:44.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28947, sync = True, waitForSettling = True)
17-03-17 18:27:44.628 -07 000000610 INF: Z Motor: Moving to -0.132511 mm, started at -0.139268 mm, distance = 6.76 um
17-03-17 18:27:44.628 -07 000000610 INF: FPGA: Xmit ZDACW 28947\n [Z Motor]
17-03-17 18:27:44.628 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:27:44.638 -07 000000610 INF: FPGA: 'ZDACW 28947' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:44.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:44.638 -07 000000502 INF: FPGA: Recv ZDACR 28947
17-03-17 18:27:44.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.798 -07 000000502 INF: FPGA: Recv ZSGSRD 29917
17-03-17 18:27:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:27:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.818 -07 000000475 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:27:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.828 -07 000000475 INF: FPGA: Recv ZSGSRD 29917
17-03-17 18:27:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.838 -07 000000475 INF: FPGA: Recv ZSGSRD 29910
17-03-17 18:27:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.848 -07 000000475 INF: FPGA: Recv ZSGSRD 29921
17-03-17 18:27:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.858 -07 000000561 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:27:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.868 -07 000000561 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:27:44.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.878 -07 000000475 INF: FPGA: Recv ZSGSRD 29916
17-03-17 18:27:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:44.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29910
17-03-17 18:27:44.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:44.898 -07 000000561 INF: FPGA: Recv ZPIEZORD 25455
17-03-17 18:27:44.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:44.908 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.8 V.
17-03-17 18:27:44.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29916 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29910 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:44.908 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29916, posNoise = 5, negNoise = 6
17-03-17 18:27:44.908 -07 000000610 INF: Z Motor: After move to -0.132511, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:44.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:44.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:44.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:44.908 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:44.908 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:44.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:44.908 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:44.908 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:44.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:27:44.908 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:44.908 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:27:44.908 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:44.908 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:44.918 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:44.918 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:44.918 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:44.918 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:44.928 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:27:44.928 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:27:44.928 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:27:44.928 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:27:44.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29124 150\n [Camera]
17-03-17 18:27:45.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:45.518 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:45.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:45.518 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:45.518 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:45.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:27:45.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:45.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:45.528 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:45.528 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:45.528 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:27:45.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29124 778
17-03-17 18:27:45.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:45.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:27:45.908 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:27:45.908 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:45.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:27:45.908 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:27:45.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:45.908 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:45.908 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:27:45.908 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:45.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:27:46.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:27:46.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:27:46.058 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:46.058 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:46.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:27:46.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:27:46.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:27:46.058 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:46.058 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:46.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:27:46.238 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:46.248 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:46.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29124 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:27:46.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:46.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132510082444056. ------
17-03-17 18:27:46.248 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13910 mm
17-03-17 18:27:46.248 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:46.248 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:46.248 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:27:46.248 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:27:46.248 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30387, sync = True, waitForSettling = False)
17-03-17 18:27:46.248 -07 000000608 INF: Z Motor: Moving to -0.139103 mm, started at -0.132510 mm, distance = -6.59 um
17-03-17 18:27:46.248 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:46.258 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:46.258 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:46.378 -07 000000608 INF: FPGA: Xmit ZDACW 30387\n [Z Motor]
17-03-17 18:27:46.378 -07 000000431 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:27:46.378 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 18:27:46.378 -07 000000502 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:46.378 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:27:46.388 -07 000000608 INF: FPGA: 'ZDACW 30387' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 18:27:46.388 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:46.388 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:46.388 -07 000000502 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:27:46.388 -07 000000618 INF: FPGA: Recv ZDACR 30387
17-03-17 18:27:46.398 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:46.398 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:46.398 -07 000000608 INF: Z Motor: MoveAbsStepped took 140 ms (did NOT wait for settling yet))
17-03-17 18:27:46.408 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:46.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:27:46.448 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:27:46.448 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:46.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:27:46.458 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:27:46.458 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:46.458 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:46.458 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:27:46.458 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:27:46.468 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:27:46.598 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:46.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:46.598 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:46.598 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 342 ms overall
17-03-17 18:27:46.778 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:27:46.778 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:27:46.818 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:46.818 -07 000000012 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:27:46.828 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:46.828 -07 000000502 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:46.828 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:27:46.828 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.102 mm/sec
17-03-17 18:27:47.448 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.024884,
17-03-17 18:27:47.778 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:47.778 -07 000000547 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:27:47.788 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:47.788 -07 000000502 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:47.808 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:47.808 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:47.808 -07 000000502 INF: Y Motor: Moved to 63.2251 after 1552 ms (table move)
17-03-17 18:27:47.808 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139103 mm (DAC = 30387)
17-03-17 18:27:47.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.808 -07 000000502 INF: FPGA: Recv ZSGSRD 30939
17-03-17 18:27:47.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:47.818 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.818 -07 000000626 INF: FPGA: Recv ZSGSRD 30942
17-03-17 18:27:47.828 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.828 -07 000000475 INF: FPGA: Recv ZSGSRD 30938
17-03-17 18:27:47.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.838 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.838 -07 000000626 INF: FPGA: Recv ZSGSRD 30946
17-03-17 18:27:47.848 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.848 -07 000000626 INF: FPGA: Recv ZSGSRD 30950
17-03-17 18:27:47.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.858 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.858 -07 000000475 INF: FPGA: Recv ZSGSRD 30942
17-03-17 18:27:47.868 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.868 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.868 -07 000000475 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:27:47.878 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.878 -07 000000475 INF: FPGA: Recv ZSGSRD 30936
17-03-17 18:27:47.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.888 -07 000000475 INF: FPGA: Recv ZSGSRD 30938
17-03-17 18:27:47.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:47.898 -07 000000502 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:27:47.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.908 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:47.908 -07 000000475 INF: FPGA: Recv ZPIEZORD 26820
17-03-17 18:27:47.918 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:47.918 -07 000000593 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -9.1 V.
17-03-17 18:27:47.918 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30942 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30942 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30936 (-138.3 uncal um), Max = 30950 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:47.918 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30942, posNoise = 8, negNoise = 6
17-03-17 18:27:47.918 -07 000000593 INF: Z Motor: After move to -0.139103, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:47.918 -07 000000593 INF: Z Motor: Settle wait time = 1555 ms, measure time = 106 ms (allowed 150 ms), total time = 1661 ms
17-03-17 18:27:47.918 -07 000000593 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:47.968 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 18:27:47.968 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:47.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:47.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:47.968 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:47.968 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:47.968 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:47.968 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:47.968 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:47.968 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:47.978 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:47.978 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:47.988 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:27:47.988 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:27:47.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:48.038 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:48.238 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:48.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:48.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:48.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:27:48.278 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:48.278 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:48.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:27:48.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:27:48.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:48.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:48.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:27:48.378 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:48.378 -07 000000502 INF: Autofocus start
17-03-17 18:27:48.378 -07 000000502 INF: MeasureProfile start
17-03-17 18:27:48.388 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:48.388 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:27:48.388 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:48.388 -07 000000502 INF: MeasureProfile done
17-03-17 18:27:48.398 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:27:48.398 -07 000000502 INF: Autofocus finished
17-03-17 18:27:48.588 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:48.588 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:48.588 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139101324101503. ----------
17-03-17 18:27:48.598 -07 000000610 INF: Cycle	13	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:48.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28928, sync = True, waitForSettling = True)
17-03-17 18:27:48.598 -07 000000610 INF: Z Motor: Moving to -0.132424 mm, started at -0.139101 mm, distance = 6.68 um
17-03-17 18:27:48.598 -07 000000610 INF: FPGA: Xmit ZDACW 28928\n [Z Motor]
17-03-17 18:27:48.598 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:27:48.608 -07 000000610 INF: FPGA: 'ZDACW 28928' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:48.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:48.608 -07 000000626 INF: FPGA: Recv ZDACR 28928
17-03-17 18:27:48.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:48.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.768 -07 000000626 INF: FPGA: Recv ZSGSRD 29911
17-03-17 18:27:48.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:48.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29911
17-03-17 18:27:48.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.788 -07 000000626 INF: FPGA: Recv ZSGSRD 29904
17-03-17 18:27:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.798 -07 000000547 INF: FPGA: Recv ZSGSRD 29901
17-03-17 18:27:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.808 -07 000000012 INF: FPGA: Recv ZSGSRD 29903
17-03-17 18:27:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.818 -07 000000608 INF: FPGA: Recv ZSGSRD 29908
17-03-17 18:27:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.828 -07 000000608 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:27:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.838 -07 000000547 INF: FPGA: Recv ZSGSRD 29913
17-03-17 18:27:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29902
17-03-17 18:27:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:48.858 -07 000000626 INF: FPGA: Recv ZSGSRD 29909
17-03-17 18:27:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:48.868 -07 000000593 INF: FPGA: Recv ZPIEZORD 25393
17-03-17 18:27:48.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:48.878 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.9 V.
17-03-17 18:27:48.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29907 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29908 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29901 (-131.6 uncal um), Max = 29913 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:48.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29907, posNoise = 6, negNoise = 6
17-03-17 18:27:48.878 -07 000000610 INF: Z Motor: After move to -0.132424, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:48.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:48.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:48.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:48.878 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:48.878 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:48.878 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:48.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:48.878 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:48.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:48.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:48.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:48.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:48.878 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:48.888 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:27:48.888 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:48.888 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:48.888 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:48.898 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:27:48.898 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:27:48.898 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:27:48.898 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:27:48.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29104 150\n [Camera]
17-03-17 18:27:49.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:49.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:49.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:49.498 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:49.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:49.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:49.498 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:49.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:27:49.508 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:49.508 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:49.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:27:49.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29104 779
17-03-17 18:27:49.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:49.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:27:49.878 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:27:49.878 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:49.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 18:27:49.878 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-17 18:27:49.878 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:49.878 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:49.878 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:27:49.878 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:49.888 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:27:50.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:50.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:50.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:50.028 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:50.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:50.028 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:50.148 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:50.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:27:50.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:50.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:27:50.218 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:50.218 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:50.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29104 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:27:50.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:50.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.13245226453478. ------
17-03-17 18:27:50.228 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13889 mm
17-03-17 18:27:50.228 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:50.228 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:50.228 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:27:50.228 -07 000000593 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:27:50.228 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30340, sync = True, waitForSettling = False)
17-03-17 18:27:50.228 -07 000000561 INF: Z Motor: Moving to -0.138888 mm, started at -0.132452 mm, distance = -6.44 um
17-03-17 18:27:50.228 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:50.238 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:50.238 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:50.238 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:27:50.248 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:27:50.248 -07 000000593 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:50.248 -07 000000593 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:50.248 -07 000000593 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:27:50.248 -07 000000561 INF: FPGA: Xmit ZDACW 30340\n [Z Motor]
17-03-17 18:27:50.248 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:27:50.258 -07 000000561 INF: FPGA: 'ZDACW 30340' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:27:50.258 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:50.268 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:50.278 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:50.278 -07 000000475 INF: FPGA: Recv ZDACR 30340
17-03-17 18:27:50.288 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:50.288 -07 000000561 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:27:50.458 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:50.458 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:27:50.538 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:27:50.538 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:27:50.538 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:50.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:27:50.548 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:27:50.548 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:50.548 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:50.548 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:50.548 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 18:27:50.558 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 18:27:50.638 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:27:50.638 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:27:50.678 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:50.678 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:27:50.688 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:50.688 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:50.688 -07 000000593 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:27:50.688 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:27:51.598 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:51.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:51.638 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:51.638 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:27:51.648 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:51.648 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:51.668 -07 000000593 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:51.668 -07 000000593 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:51.668 -07 000000593 INF: Y Motor: Moved to 64.0576 after 1437 ms (table move)
17-03-17 18:27:51.668 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138888 mm (DAC = 30340)
17-03-17 18:27:51.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.668 -07 000000626 INF: FPGA: Recv ZSGSRD 30910
17-03-17 18:27:51.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:27:51.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.678 -07 000000608 INF: FPGA: Recv ZSGSRD 30904
17-03-17 18:27:51.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.688 -07 000000382 INF: FPGA: Recv ZSGSRD 30924
17-03-17 18:27:51.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30910
17-03-17 18:27:51.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.708 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.708 -07 000000424 INF: FPGA: Recv ZSGSRD 30906
17-03-17 18:27:51.718 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.718 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.718 -07 000000626 INF: FPGA: Recv ZSGSRD 30917
17-03-17 18:27:51.728 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.728 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.728 -07 000000012 INF: FPGA: Recv ZSGSRD 30909
17-03-17 18:27:51.738 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.738 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30903
17-03-17 18:27:51.748 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.748 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.748 -07 000000012 INF: FPGA: Recv ZSGSRD 30908
17-03-17 18:27:51.758 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:51.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30908
17-03-17 18:27:51.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.768 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:51.768 -07 000000012 INF: FPGA: Recv ZPIEZORD 26775
17-03-17 18:27:51.778 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:51.778 -07 000000547 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.1 V.
17-03-17 18:27:51.778 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30910 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30903 (-138.1 uncal um), Max = 30924 (-138.2 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:27:51.778 -07 000000547 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30910, posNoise = 14, negNoise = 7
17-03-17 18:27:51.778 -07 000000547 INF: Z Motor: After move to -0.138888, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:51.778 -07 000000547 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:27:51.778 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:51.828 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:27:51.828 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:51.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:51.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:51.828 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:51.828 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:51.828 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:51.828 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:51.838 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:51.838 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:51.838 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:51.838 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:51.848 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:27:51.848 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:27:51.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:51.898 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:52.088 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:52.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:52.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:52.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:27:52.128 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:52.128 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:52.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 18:27:52.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:27:52.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:52.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:52.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:27:52.238 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:52.238 -07 000000012 INF: Autofocus start
17-03-17 18:27:52.238 -07 000000012 INF: MeasureProfile start
17-03-17 18:27:52.238 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:52.248 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:52.248 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:52.248 -07 000000012 INF: MeasureProfile done
17-03-17 18:27:52.248 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:27:52.248 -07 000000012 INF: Autofocus finished
17-03-17 18:27:52.448 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:52.448 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:52.448 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138895749312966. ----------
17-03-17 18:27:52.448 -07 000000610 INF: Cycle	13	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:52.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28864, sync = True, waitForSettling = True)
17-03-17 18:27:52.458 -07 000000610 INF: Z Motor: Moving to -0.132131 mm, started at -0.138896 mm, distance = 6.76 um
17-03-17 18:27:52.458 -07 000000610 INF: FPGA: Xmit ZDACW 28864\n [Z Motor]
17-03-17 18:27:52.458 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:27:52.468 -07 000000610 INF: FPGA: 'ZDACW 28864' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:52.468 -07 000000431 INF: FPGA: Recv ZDACR 28864
17-03-17 18:27:52.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29863
17-03-17 18:27:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.638 -07 000000431 INF: FPGA: Recv ZSGSRD 29858
17-03-17 18:27:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29858
17-03-17 18:27:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.658 -07 000000547 INF: FPGA: Recv ZSGSRD 29858
17-03-17 18:27:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29856
17-03-17 18:27:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29856
17-03-17 18:27:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29858
17-03-17 18:27:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.698 -07 000000475 INF: FPGA: Recv ZSGSRD 29864
17-03-17 18:27:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.708 -07 000000608 INF: FPGA: Recv ZSGSRD 29859
17-03-17 18:27:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:52.718 -07 000000475 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:27:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:52.728 -07 000000608 INF: FPGA: Recv ZPIEZORD 25379
17-03-17 18:27:52.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:52.738 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.8 V.
17-03-17 18:27:52.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29858 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29850 (-131.3 uncal um), Max = 29864 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:27:52.738 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29858, posNoise = 6, negNoise = 8
17-03-17 18:27:52.738 -07 000000610 INF: Z Motor: After move to -0.132131, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:52.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:27:52.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:52.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:52.738 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:52.738 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:52.738 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:52.738 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:52.738 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:52.738 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:52.738 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:52.738 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:52.738 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:52.738 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:52.738 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:52.748 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:27:52.748 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:52.748 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:52.758 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:27:52.758 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:27:52.758 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:27:52.758 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:27:52.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29041 150\n [Camera]
17-03-17 18:27:52.808 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.011254,
17-03-17 18:27:52.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:53.358 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:53.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:53.358 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:53.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:53.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:53.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:53.358 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:53.358 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:27:53.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:53.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:27:53.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29041 778
17-03-17 18:27:53.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:53.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:27:53.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:27:53.758 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:53.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:27:53.758 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:27:53.758 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:53.758 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:53.758 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:27:53.758 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:53.768 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:27:53.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:53.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:53.888 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:53.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:53.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:53.888 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:53.888 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:53.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:27:53.888 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:53.888 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:27:54.078 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:54.078 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:54.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29041 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:27:54.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:54.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132137478139834. ------
17-03-17 18:27:54.098 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13861 mm
17-03-17 18:27:54.098 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:54.098 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:54.098 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:27:54.098 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:27:54.098 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30278, sync = True, waitForSettling = False)
17-03-17 18:27:54.098 -07 000000382 INF: Z Motor: Moving to -0.138604 mm, started at -0.132137 mm, distance = -6.47 um
17-03-17 18:27:54.098 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:54.108 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:54.108 -07 000000382 INF: FPGA: Xmit ZDACW 30278\n [Z Motor]
17-03-17 18:27:54.108 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:27:54.118 -07 000000382 INF: FPGA: 'ZDACW 30278' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:27:54.118 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:54.118 -07 000000475 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:27:54.128 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:54.128 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:27:54.128 -07 000000561 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:54.128 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:54.128 -07 000000561 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:27:54.138 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:54.138 -07 000000424 INF: FPGA: Recv ZDACR 30278
17-03-17 18:27:54.148 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:54.148 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:54.148 -07 000000382 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:27:54.288 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:27:54.288 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:27:54.288 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:54.288 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:27:54.288 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:27:54.288 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:54.298 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:27:54.298 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:27:54.298 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:27:54.298 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:27:54.328 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:54.328 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:27:54.518 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:27:54.518 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 18:27:54.548 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:54.558 -07 000000502 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:27:54.558 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:27:54.558 -07 000000561 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:54.558 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:27:54.558 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.835 mm, average velocity = 2.136 mm/sec
17-03-17 18:27:55.508 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:55.508 -07 000000476 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:27:55.518 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:27:55.518 -07 000000561 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:55.538 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:55.538 -07 000000561 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:27:55.538 -07 000000561 INF: Y Motor: Moved to 64.8799 after 1433 ms (table move)
17-03-17 18:27:55.538 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138604 mm (DAC = 30278)
17-03-17 18:27:55.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.538 -07 000000608 INF: FPGA: Recv ZSGSRD 30858
17-03-17 18:27:55.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:27:55.548 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.548 -07 000000462 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:27:55.558 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30860
17-03-17 18:27:55.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.568 -07 000000561 INF: FPGA: Recv ZSGSRD 30873
17-03-17 18:27:55.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.578 -07 000000608 INF: FPGA: Recv ZSGSRD 30864
17-03-17 18:27:55.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.588 -07 000000431 INF: FPGA: Recv ZSGSRD 30871
17-03-17 18:27:55.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.598 -07 000000382 INF: FPGA: Recv ZSGSRD 30866
17-03-17 18:27:55.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:55.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.608 -07 000000480 INF: FPGA: Recv ZSGSRD 30866
17-03-17 18:27:55.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.618 -07 000000431 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:27:55.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:55.628 -07 000000012 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:27:55.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.638 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:55.638 -07 000000382 INF: FPGA: Recv ZPIEZORD 26760
17-03-17 18:27:55.648 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:55.648 -07 000000547 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -9.0 V.
17-03-17 18:27:55.648 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30864 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30858 (-137.8 uncal um), Max = 30873 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:55.648 -07 000000547 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30864, posNoise = 9, negNoise = 6
17-03-17 18:27:55.648 -07 000000547 INF: Z Motor: After move to -0.138604, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:55.648 -07 000000547 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:27:55.648 -07 000000547 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:55.698 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:27:55.698 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:55.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:55.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:55.698 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:55.698 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:55.698 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:55.698 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:55.698 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:27:55.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:55.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:55.708 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:55.708 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:27:55.708 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:27:55.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:55.758 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:55.958 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:55.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:55.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:55.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:27:55.998 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:27:55.998 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:55.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:27:56.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:27:56.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:56.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:27:56.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:27:56.098 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:56.098 -07 000000547 INF: Autofocus start
17-03-17 18:27:56.098 -07 000000547 INF: MeasureProfile start
17-03-17 18:27:56.098 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:56.108 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:27:56.108 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:56.108 -07 000000547 INF: MeasureProfile done
17-03-17 18:27:56.108 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:27:56.108 -07 000000547 INF: Autofocus finished
17-03-17 18:27:56.308 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:27:56.308 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:27:56.308 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138600235554445. ----------
17-03-17 18:27:56.308 -07 000000610 INF: Cycle	13	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:27:56.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28803, sync = True, waitForSettling = True)
17-03-17 18:27:56.318 -07 000000610 INF: Z Motor: Moving to -0.131852 mm, started at -0.138600 mm, distance = 6.75 um
17-03-17 18:27:56.318 -07 000000610 INF: FPGA: Xmit ZDACW 28803\n [Z Motor]
17-03-17 18:27:56.318 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:27:56.328 -07 000000610 INF: FPGA: 'ZDACW 28803' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:56.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:56.328 -07 000000561 INF: FPGA: Recv ZDACR 28803
17-03-17 18:27:56.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:27:56.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29824
17-03-17 18:27:56.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.498 -07 000000593 INF: FPGA: Recv ZSGSRD 29813
17-03-17 18:27:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.508 -07 000000593 INF: FPGA: Recv ZSGSRD 29814
17-03-17 18:27:56.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.518 -07 000000475 INF: FPGA: Recv ZSGSRD 29816
17-03-17 18:27:56.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.528 -07 000000626 INF: FPGA: Recv ZSGSRD 29818
17-03-17 18:27:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.538 -07 000000475 INF: FPGA: Recv ZSGSRD 29816
17-03-17 18:27:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.548 -07 000000593 INF: FPGA: Recv ZSGSRD 29810
17-03-17 18:27:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.558 -07 000000475 INF: FPGA: Recv ZSGSRD 29811
17-03-17 18:27:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29817
17-03-17 18:27:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:56.578 -07 000000475 INF: FPGA: Recv ZSGSRD 29817
17-03-17 18:27:56.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:56.588 -07 000000382 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 18:27:56.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:56.598 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.395 V. Piezo Error = -9.8 V.
17-03-17 18:27:56.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29816 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29816 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29810 (-131.0 uncal um), Max = 29824 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:27:56.598 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29816, posNoise = 8, negNoise = 6
17-03-17 18:27:56.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:27:56.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:27:56.598 -07 000000610 INF: Z Motor: After move to -0.131852, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:56.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:27:56.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:56.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:56.598 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:56.598 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:56.598 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:27:56.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:56.598 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:27:56.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:27:56.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:27:56.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:27:56.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:27:56.598 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:27:56.608 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:27:56.608 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:27:56.608 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:27:56.608 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:27:56.618 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:27:56.618 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:27:56.618 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:27:56.618 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:27:56.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28979 150\n [Camera]
17-03-17 18:27:56.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:27:57.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:27:57.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:27:57.218 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:57.218 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:57.218 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1076348576, 0x0, 391868352) start.
17-03-17 18:27:57.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:27:57.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:27:57.218 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:57.218 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:57.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1111770840, 0x0, 418435064) start.
17-03-17 18:27:57.408 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 778
17-03-17 18:27:57.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:27:57.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1076348576, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:27:57.598 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:27:57.598 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:57.598 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1111770840, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:27:57.598 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:27:57.598 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:57.598 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:57.598 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:27:57.598 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:27:57.608 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:27:57.748 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:27:57.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:27:57.748 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:27:57.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:27:57.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:27:57.858 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:27:57.858 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:27:57.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1147193104, 0x0, 391868352) start.
17-03-17 18:27:57.858 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:27:57.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:27:57.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:27:57.938 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:27:57.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28979 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-17 18:27:57.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:27:57.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.13186766122988. ------
17-03-17 18:27:57.948 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:57.948 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13846 mm
17-03-17 18:27:57.948 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:27:57.948 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:57.948 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30247, sync = True, waitForSettling = False)
17-03-17 18:27:57.948 -07 000000608 INF: Z Motor: Moving to -0.138462 mm, started at -0.131868 mm, distance = -6.59 um
17-03-17 18:27:57.948 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:27:57.948 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 18:27:57.958 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:57.958 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:57.958 -07 000000480 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:27:57.968 -07 000000608 INF: FPGA: Xmit ZDACW 30247\n [Z Motor]
17-03-17 18:27:57.968 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:27:57.968 -07 000000424 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:57.968 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:27:57.968 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:27:57.968 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:27:57.978 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:27:57.978 -07 000000608 INF: FPGA: 'ZDACW 30247' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:27:57.988 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:27:57.998 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:27:57.998 -07 000000593 INF: FPGA: Recv ZDACR 30247
17-03-17 18:27:58.008 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:27:58.008 -07 000000608 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:27:58.178 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.989471,
17-03-17 18:27:58.178 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:27:58.178 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:27:58.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1147193104, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:27:58.258 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:27:58.258 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:27:58.258 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:58.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:27:58.258 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:58.258 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:27:58.258 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:27:58.258 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 18:27:58.268 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:27:58.358 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:27:58.358 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:27:58.398 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:58.398 -07 000000480 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:27:58.408 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:27:58.408 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:58.408 -07 000000424 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:27:58.408 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 18:27:59.358 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:27:59.358 -07 000000618 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:27:59.368 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.368 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:27:59.388 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:27:59.388 -07 000000424 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:27:59.388 -07 000000424 INF: Y Motor: Moved to 65.7148 after 1440 ms (table move)
17-03-17 18:27:59.388 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138462 mm (DAC = 30247)
17-03-17 18:27:59.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.398 -07 000000476 INF: FPGA: Recv ZSGSRD 30842
17-03-17 18:27:59.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:27:59.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.398 -07 000000618 INF: FPGA: Recv ZSGSRD 30847
17-03-17 18:27:59.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:27:59.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.408 -07 000000618 INF: FPGA: Recv ZSGSRD 30840
17-03-17 18:27:59.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30844
17-03-17 18:27:59.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30844
17-03-17 18:27:59.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30851
17-03-17 18:27:59.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.448 -07 000000502 INF: FPGA: Recv ZSGSRD 30843
17-03-17 18:27:59.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.458 -07 000000502 INF: FPGA: Recv ZSGSRD 30837
17-03-17 18:27:59.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.468 -07 000000547 INF: FPGA: Recv ZSGSRD 30834
17-03-17 18:27:59.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:27:59.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30844
17-03-17 18:27:59.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.488 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:27:59.488 -07 000000547 INF: FPGA: Recv ZPIEZORD 26717
17-03-17 18:27:59.498 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:27:59.498 -07 000000382 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -9.1 V.
17-03-17 18:27:59.498 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30843 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30844 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30851 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:27:59.498 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30843, posNoise = 8, negNoise = 9
17-03-17 18:27:59.498 -07 000000382 INF: Z Motor: After move to -0.138462, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:27:59.498 -07 000000382 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:27:59.498 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:27:59.548 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:27:59.548 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:27:59.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:27:59.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:27:59.548 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:27:59.548 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:27:59.548 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:27:59.548 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:27:59.548 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:27:59.548 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:27:59.558 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:27:59.558 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:27:59.568 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:27:59.568 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:27:59.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:27:59.618 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:27:59.818 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:27:59.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:27:59.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:27:59.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107365536, 0x0, 559484976) start.
17-03-17 18:27:59.858 -07 000000608 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:27:59.858 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:27:59.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 18:27:59.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107365536, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:27:59.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:27:59.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:27:59.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:27:59.958 -07 000000382 INF: Autofocus start
17-03-17 18:27:59.958 -07 000000382 INF: MeasureProfile start
17-03-17 18:27:59.958 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:27:59.958 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:27:59.968 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:27:59.968 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:27:59.968 -07 000000382 INF: MeasureProfile done
17-03-17 18:27:59.968 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:27:59.968 -07 000000382 INF: Autofocus finished
17-03-17 18:28:00.168 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:00.168 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:00.178 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138465327099468. ----------
17-03-17 18:28:00.178 -07 000000610 INF: Cycle	13	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:00.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28755, sync = True, waitForSettling = True)
17-03-17 18:28:00.178 -07 000000610 INF: Z Motor: Moving to -0.131632 mm, started at -0.138465 mm, distance = 6.83 um
17-03-17 18:28:00.178 -07 000000610 INF: FPGA: Xmit ZDACW 28755\n [Z Motor]
17-03-17 18:28:00.178 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:28:00.188 -07 000000610 INF: FPGA: 'ZDACW 28755' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:00.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:00.188 -07 000000480 INF: FPGA: Recv ZDACR 28755
17-03-17 18:28:00.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:00.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.348 -07 000000618 INF: FPGA: Recv ZSGSRD 29784
17-03-17 18:28:00.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:00.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.358 -07 000000475 INF: FPGA: Recv ZSGSRD 29777
17-03-17 18:28:00.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.368 -07 000000608 INF: FPGA: Recv ZSGSRD 29786
17-03-17 18:28:00.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.378 -07 000000476 INF: FPGA: Recv ZSGSRD 29776
17-03-17 18:28:00.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.388 -07 000000382 INF: FPGA: Recv ZSGSRD 29781
17-03-17 18:28:00.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.398 -07 000000547 INF: FPGA: Recv ZSGSRD 29779
17-03-17 18:28:00.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.418 -07 000000438 INF: FPGA: Recv ZSGSRD 29788
17-03-17 18:28:00.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:00.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29777
17-03-17 18:28:00.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:00.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.458 -07 000000593 INF: FPGA: Recv ZSGSRD 29774
17-03-17 18:28:00.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:00.478 -07 000000480 INF: FPGA: Recv ZSGSRD 29777
17-03-17 18:28:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:00.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:00.498 -07 000000382 INF: FPGA: Recv ZPIEZORD 25349
17-03-17 18:28:00.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:00.508 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.7 V.
17-03-17 18:28:00.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29778 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29774 (-130.8 uncal um), Max = 29788 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:28:00.508 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 8, negNoise = 6
17-03-17 18:28:00.508 -07 000000610 INF: Z Motor: After move to -0.131632, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:00.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-17 18:28:00.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:00.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:00.508 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:00.508 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:00.508 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:00.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:00.508 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:00.508 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:00.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:28:00.508 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:00.508 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:00.508 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:00.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:00.518 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:00.518 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:00.518 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:00.528 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:28:00.528 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:28:00.528 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:28:00.528 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:28:00.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28932 150\n [Camera]
17-03-17 18:28:00.728 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:28:01.118 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:01.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:01.118 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:01.118 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:01.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:01.128 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:01.128 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:01.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:28:01.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:01.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:28:01.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 778
17-03-17 18:28:01.458 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:01.598 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 475 ms.
17-03-17 18:28:01.598 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 475 ms.
17-03-17 18:28:01.598 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:01.598 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:01.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 471 ms.
17-03-17 18:28:01.598 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 473 ms.
17-03-17 18:28:01.598 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:01.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:01.608 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:01.608 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 484 ms.
17-03-17 18:28:01.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:01.618 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 489 ms.
17-03-17 18:28:01.658 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:01.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:01.658 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:01.658 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:01.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:01.658 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:01.658 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:01.658 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:28:01.668 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:01.668 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:28:01.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:01.848 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:01.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28932 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:28:01.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:01.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131636389592776. ------
17-03-17 18:28:01.848 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:01.848 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13798 mm
17-03-17 18:28:01.848 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:01.858 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:01.858 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:01.858 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:28:01.858 -07 000000476 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:28:01.858 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30141, sync = True, waitForSettling = False)
17-03-17 18:28:01.858 -07 000000593 INF: Z Motor: Moving to -0.137977 mm, started at -0.131636 mm, distance = -6.34 um
17-03-17 18:28:01.858 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:01.868 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:01.868 -07 000000626 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:28:01.878 -07 000000593 INF: FPGA: Xmit ZDACW 30141\n [Z Motor]
17-03-17 18:28:01.878 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:28:01.878 -07 000000476 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:01.878 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:28:01.878 -07 000000476 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:01.878 -07 000000476 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:28:01.888 -07 000000593 INF: FPGA: 'ZDACW 30141' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:28:01.888 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:01.898 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:01.898 -07 000000480 INF: FPGA: Recv ZDACR 30141
17-03-17 18:28:01.908 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:01.908 -07 000000593 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:28:02.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:28:02.058 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:28:02.058 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:02.058 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:02.058 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:28:02.058 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:28:02.058 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:28:02.058 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:02.068 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:28:02.068 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:28:02.068 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:28:02.078 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:28:02.258 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:28:02.258 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:28:02.298 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:02.298 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:28:02.308 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:02.308 -07 000000476 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:02.308 -07 000000476 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:28:02.308 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.187 mm/sec
17-03-17 18:28:03.258 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:03.258 -07 000000475 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:28:03.268 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:03.268 -07 000000476 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:03.298 -07 000000476 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:03.298 -07 000000476 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:03.298 -07 000000476 INF: Y Motor: Moved to 66.5396 after 1442 ms (table move)
17-03-17 18:28:03.298 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137977 mm (DAC = 30141)
17-03-17 18:28:03.298 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30777
17-03-17 18:28:03.318 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:03.318 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.318 -07 000000476 INF: FPGA: Recv ZSGSRD 30774
17-03-17 18:28:03.328 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.328 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.328 -07 000000475 INF: FPGA: Recv ZSGSRD 30758
17-03-17 18:28:03.338 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.338 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.338 -07 000000424 INF: FPGA: Recv ZSGSRD 30768
17-03-17 18:28:03.348 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.348 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.348 -07 000000480 INF: FPGA: Recv ZSGSRD 30765
17-03-17 18:28:03.358 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.358 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.358 -07 000000476 INF: FPGA: Recv ZSGSRD 30764
17-03-17 18:28:03.368 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.368 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.368 -07 000000424 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:28:03.378 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.378 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.378 -07 000000476 INF: FPGA: Recv ZSGSRD 30766
17-03-17 18:28:03.388 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.388 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.388 -07 000000480 INF: FPGA: Recv ZSGSRD 30763
17-03-17 18:28:03.398 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.398 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:03.398 -07 000000476 INF: FPGA: Recv ZSGSRD 30777
17-03-17 18:28:03.408 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.408 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:03.408 -07 000000475 INF: FPGA: Recv ZPIEZORD 26645
17-03-17 18:28:03.418 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:03.418 -07 000000438 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -9.1 V.
17-03-17 18:28:03.418 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30768 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30766 (-137.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30758 (-137.1 uncal um), Max = 30777 (-137.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:28:03.418 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30768, posNoise = 9, negNoise = 10
17-03-17 18:28:03.418 -07 000000438 INF: Z Motor: After move to -0.137977, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:03.418 -07 000000438 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms
17-03-17 18:28:03.418 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:03.458 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:28:03.458 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:03.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:03.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:03.458 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:03.458 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:03.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:03.458 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:03.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:28:03.458 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:03.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:03.468 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:03.468 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:28:03.468 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:28:03.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:03.518 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:03.538 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.989471,
17-03-17 18:28:03.718 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:03.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:03.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:03.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107365536, 0x0, 559484976) start.
17-03-17 18:28:03.758 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:03.758 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:03.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:28:03.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107365536, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:28:03.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:03.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:03.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:28:03.858 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:03.858 -07 000000618 INF: Autofocus start
17-03-17 18:28:03.858 -07 000000618 INF: MeasureProfile start
17-03-17 18:28:03.858 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:03.868 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:03.868 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:03.868 -07 000000618 INF: MeasureProfile done
17-03-17 18:28:03.868 -07 000000618 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 18:28:03.868 -07 000000618 INF: Autofocus finished
17-03-17 18:28:04.068 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:04.068 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:04.068 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137983511188836. ----------
17-03-17 18:28:04.068 -07 000000610 INF: Cycle	13	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:04.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28568, sync = True, waitForSettling = True)
17-03-17 18:28:04.078 -07 000000610 INF: Z Motor: Moving to -0.130776 mm, started at -0.137984 mm, distance = 7.21 um
17-03-17 18:28:04.078 -07 000000610 INF: FPGA: Xmit ZDACW 28568\n [Z Motor]
17-03-17 18:28:04.078 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:28:04.088 -07 000000610 INF: FPGA: 'ZDACW 28568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:04.088 -07 000000608 INF: FPGA: Recv ZDACR 28568
17-03-17 18:28:04.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.248 -07 000000476 INF: FPGA: Recv ZSGSRD 29653
17-03-17 18:28:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.258 -07 000000626 INF: FPGA: Recv ZSGSRD 29649
17-03-17 18:28:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29649
17-03-17 18:28:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.278 -07 000000608 INF: FPGA: Recv ZSGSRD 29637
17-03-17 18:28:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.288 -07 000000593 INF: FPGA: Recv ZSGSRD 29648
17-03-17 18:28:04.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29641
17-03-17 18:28:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.308 -07 000000424 INF: FPGA: Recv ZSGSRD 29649
17-03-17 18:28:04.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.318 -07 000000502 INF: FPGA: Recv ZSGSRD 29654
17-03-17 18:28:04.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29650
17-03-17 18:28:04.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:04.338 -07 000000502 INF: FPGA: Recv ZSGSRD 29652
17-03-17 18:28:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:04.348 -07 000000618 INF: FPGA: Recv ZPIEZORD 25163
17-03-17 18:28:04.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:04.358 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.8 V.
17-03-17 18:28:04.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29648 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29649 (-130.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29637 (-129.9 uncal um), Max = 29654 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:28:04.358 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29648, posNoise = 6, negNoise = 11
17-03-17 18:28:04.358 -07 000000610 INF: Z Motor: After move to -0.130776, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:04.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:28:04.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:04.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:04.358 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:04.358 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:04.358 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:04.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:04.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:04.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:04.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:04.358 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:04.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:04.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:04.358 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:04.358 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:04.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:28:04.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:04.378 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:28:04.378 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:28:04.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:28:04.378 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:28:04.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28745 150\n [Camera]
17-03-17 18:28:04.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:04.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:04.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:04.978 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:04.978 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:04.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:04.978 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:04.978 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:04.978 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:28:04.988 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:04.988 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:28:05.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28745 778
17-03-17 18:28:05.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:05.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:28:05.378 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:28:05.378 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:05.378 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:05.378 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:28:05.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:28:05.378 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:28:05.378 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:05.378 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:05.388 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:28:05.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:05.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:05.508 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:05.508 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:05.508 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:28:05.508 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:05.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:05.508 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:05.508 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:05.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1122041616, 0x0, 418435064) start.
17-03-17 18:28:05.698 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:05.698 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:05.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28745 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:28:05.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:05.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130788393590064. ------
17-03-17 18:28:05.708 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13759 mm
17-03-17 18:28:05.708 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:05.708 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:05.708 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:28:05.708 -07 000000593 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 18:28:05.708 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30055, sync = True, waitForSettling = False)
17-03-17 18:28:05.708 -07 000000424 INF: Z Motor: Moving to -0.137583 mm, started at -0.130788 mm, distance = -6.79 um
17-03-17 18:28:05.708 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:05.718 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:05.718 -07 000000424 INF: FPGA: Xmit ZDACW 30055\n [Z Motor]
17-03-17 18:28:05.718 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:28:05.728 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:05.728 -07 000000424 INF: FPGA: 'ZDACW 30055' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:28:05.728 -07 000000476 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:28:05.738 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:05.738 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:28:05.738 -07 000000593 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:05.738 -07 000000593 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:05.738 -07 000000593 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:28:05.748 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:05.748 -07 000000626 INF: FPGA: Recv ZDACR 30055
17-03-17 18:28:05.758 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:05.758 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:05.758 -07 000000424 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:28:05.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:28:05.908 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:28:05.908 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:05.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1122041616, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:28:05.908 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:28:05.908 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:05.918 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:05.918 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:28:05.918 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:05.928 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:28:05.938 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:05.938 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:28:06.128 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:28:06.128 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:28:06.168 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:06.168 -07 000000547 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:28:06.178 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:06.178 -07 000000593 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:06.178 -07 000000593 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:28:06.178 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:28:06.598 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:07.128 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:07.128 -07 000000618 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:28:07.138 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:07.138 -07 000000593 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:07.158 -07 000000593 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:07.158 -07 000000593 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:07.158 -07 000000593 INF: Y Motor: Moved to 67.3726 after 1446 ms (table move)
17-03-17 18:28:07.158 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137583 mm (DAC = 30055)
17-03-17 18:28:07.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.158 -07 000000547 INF: FPGA: Recv ZSGSRD 30706
17-03-17 18:28:07.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:07.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.168 -07 000000547 INF: FPGA: Recv ZSGSRD 30702
17-03-17 18:28:07.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30704
17-03-17 18:28:07.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.188 -07 000000502 INF: FPGA: Recv ZSGSRD 30703
17-03-17 18:28:07.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.198 -07 000000424 INF: FPGA: Recv ZSGSRD 30708
17-03-17 18:28:07.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.208 -07 000000012 INF: FPGA: Recv ZSGSRD 30711
17-03-17 18:28:07.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.218 -07 000000593 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:28:07.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.228 -07 000000012 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:28:07.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30706
17-03-17 18:28:07.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:07.248 -07 000000012 INF: FPGA: Recv ZSGSRD 30703
17-03-17 18:28:07.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.258 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:07.258 -07 000000424 INF: FPGA: Recv ZPIEZORD 26590
17-03-17 18:28:07.268 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.268 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.1 V.
17-03-17 18:28:07.268 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30705 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30705 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30702 (-136.8 uncal um), Max = 30711 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:28:07.268 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30705, posNoise = 6, negNoise = 3
17-03-17 18:28:07.268 -07 000000382 INF: Z Motor: After move to -0.137583, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:07.268 -07 000000382 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:28:07.268 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:07.318 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:28:07.318 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:07.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:07.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:07.318 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:07.318 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:07.318 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:07.318 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:07.318 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:07.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:07.328 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:07.328 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:07.328 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:28:07.328 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:28:07.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:07.378 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:07.578 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:07.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:07.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:07.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:28:07.618 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:07.618 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:07.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 18:28:07.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:28:07.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:07.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:07.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:28:07.718 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:07.718 -07 000000475 INF: Autofocus start
17-03-17 18:28:07.718 -07 000000475 INF: MeasureProfile start
17-03-17 18:28:07.718 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:07.728 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:07.728 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:07.728 -07 000000475 INF: MeasureProfile done
17-03-17 18:28:07.728 -07 000000475 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:28:07.728 -07 000000475 INF: Autofocus finished
17-03-17 18:28:07.928 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:07.928 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 18:28:07.928 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137578785823905. ----------
17-03-17 18:28:07.938 -07 000000610 INF: Cycle	13	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:07.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28533, sync = True, waitForSettling = True)
17-03-17 18:28:07.938 -07 000000610 INF: Z Motor: Moving to -0.130616 mm, started at -0.137579 mm, distance = 6.96 um
17-03-17 18:28:07.938 -07 000000610 INF: FPGA: Xmit ZDACW 28533\n [Z Motor]
17-03-17 18:28:07.938 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:28:07.948 -07 000000610 INF: FPGA: 'ZDACW 28533' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:07.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:07.948 -07 000000618 INF: FPGA: Recv ZDACR 28533
17-03-17 18:28:07.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:07.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.108 -07 000000480 INF: FPGA: Recv ZSGSRD 29627
17-03-17 18:28:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.118 -07 000000476 INF: FPGA: Recv ZSGSRD 29621
17-03-17 18:28:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.128 -07 000000424 INF: FPGA: Recv ZSGSRD 29621
17-03-17 18:28:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29625
17-03-17 18:28:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.148 -07 000000424 INF: FPGA: Recv ZSGSRD 29619
17-03-17 18:28:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29628
17-03-17 18:28:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29622
17-03-17 18:28:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.178 -07 000000593 INF: FPGA: Recv ZSGSRD 29623
17-03-17 18:28:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29622
17-03-17 18:28:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:08.198 -07 000000593 INF: FPGA: Recv ZSGSRD 29612
17-03-17 18:28:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:08.208 -07 000000547 INF: FPGA: Recv ZPIEZORD 25185
17-03-17 18:28:08.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:08.218 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.7 V.
17-03-17 18:28:08.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29612 (-129.8 uncal um), Max = 29628 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:28:08.218 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 6, negNoise = 10
17-03-17 18:28:08.218 -07 000000610 INF: Z Motor: After move to -0.130616, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:08.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:28:08.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:08.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:08.218 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:08.218 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:08.218 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:08.218 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:08.218 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:08.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:08.218 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:08.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:08.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:08.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:08.228 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:08.228 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:08.228 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:08.228 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:08.238 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:28:08.238 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:28:08.238 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:28:08.238 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:28:08.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28710 150\n [Camera]
17-03-17 18:28:08.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:08.838 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:08.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:08.838 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:08.838 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:08.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:28:08.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:08.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:08.838 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:08.838 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:08.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:28:08.898 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.983999,
17-03-17 18:28:09.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28710 781
17-03-17 18:28:09.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:09.238 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:28:09.238 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:28:09.238 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:09.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:28:09.238 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:28:09.238 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:09.238 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:09.238 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:28:09.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:09.248 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:28:09.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:09.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:09.368 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:09.368 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:09.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:28:09.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:09.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:09.368 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:09.368 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:09.368 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:28:09.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:09.558 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:09.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28710 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:28:09.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:09.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130621364074378. ------
17-03-17 18:28:09.568 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:09.568 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13701 mm
17-03-17 18:28:09.568 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:09.568 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:09.568 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:28:09.568 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:28:09.568 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29930, sync = True, waitForSettling = False)
17-03-17 18:28:09.568 -07 000000618 INF: Z Motor: Moving to -0.137011 mm, started at -0.130621 mm, distance = -6.39 um
17-03-17 18:28:09.578 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:09.578 -07 000000618 INF: FPGA: Xmit ZDACW 29930\n [Z Motor]
17-03-17 18:28:09.578 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:28:09.588 -07 000000618 INF: FPGA: 'ZDACW 29930' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:28:09.588 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:09.588 -07 000000480 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:28:09.598 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:09.598 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:28:09.598 -07 000000608 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:09.598 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:09.598 -07 000000608 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:28:09.608 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:09.608 -07 000000475 INF: FPGA: Recv ZDACR 29930
17-03-17 18:28:09.618 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:09.618 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:09.618 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:28:09.758 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:28:09.758 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:28:09.758 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:09.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:28:09.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:28:09.768 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:09.768 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:09.768 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:28:09.768 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:28:09.768 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:28:09.798 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:09.798 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:28:09.988 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:28:09.988 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:28:10.028 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:10.028 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:28:10.038 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:10.038 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:10.038 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:28:10.038 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 18:28:10.988 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:10.988 -07 000000475 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:28:10.998 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:10.998 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:11.018 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:11.018 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:11.018 -07 000000608 INF: Y Motor: Moved to 68.2056 after 1445 ms (table move)
17-03-17 18:28:11.018 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137011 mm (DAC = 29930)
17-03-17 18:28:11.018 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.028 -07 000000438 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:28:11.028 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:28:11.028 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30615
17-03-17 18:28:11.038 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:11.038 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.038 -07 000000475 INF: FPGA: Recv ZSGSRD 30618
17-03-17 18:28:11.048 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.048 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30627
17-03-17 18:28:11.058 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.058 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.058 -07 000000502 INF: FPGA: Recv ZSGSRD 30616
17-03-17 18:28:11.068 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.068 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.068 -07 000000480 INF: FPGA: Recv ZSGSRD 30614
17-03-17 18:28:11.078 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.078 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.078 -07 000000475 INF: FPGA: Recv ZSGSRD 30613
17-03-17 18:28:11.088 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.088 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.088 -07 000000626 INF: FPGA: Recv ZSGSRD 30610
17-03-17 18:28:11.098 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.098 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.098 -07 000000547 INF: FPGA: Recv ZSGSRD 30617
17-03-17 18:28:11.108 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.108 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.108 -07 000000618 INF: FPGA: Recv ZSGSRD 30617
17-03-17 18:28:11.118 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.118 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:11.118 -07 000000476 INF: FPGA: Recv ZPIEZORD 26485
17-03-17 18:28:11.128 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.128 -07 000000424 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.567 V. Piezo Error = -9.1 V.
17-03-17 18:28:11.128 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30617 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30616 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30610 (-136.2 uncal um), Max = 30627 (-136.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:28:11.128 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30617, posNoise = 10, negNoise = 7
17-03-17 18:28:11.128 -07 000000424 INF: Z Motor: After move to -0.137011, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:11.128 -07 000000424 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:28:11.128 -07 000000424 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:11.178 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:28:11.178 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:11.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:11.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:11.188 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:11.188 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:11.188 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:11.188 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:11.188 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:28:11.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:11.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:11.188 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:11.198 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:28:11.198 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:28:11.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:11.258 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:11.458 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:11.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:11.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:11.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174338944, 0x0, 559484976) start.
17-03-17 18:28:11.498 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:11.498 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:11.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 300 ms overall
17-03-17 18:28:11.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174338944, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:28:11.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:11.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:28:11.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:28:11.598 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:11.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:11.598 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:11.598 -07 000000626 INF: Autofocus start
17-03-17 18:28:11.598 -07 000000626 INF: MeasureProfile start
17-03-17 18:28:11.598 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:11.608 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:11.608 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:11.608 -07 000000626 INF: MeasureProfile done
17-03-17 18:28:11.608 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:28:11.608 -07 000000626 INF: Autofocus finished
17-03-17 18:28:11.808 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:11.808 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:11.808 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.13701345515543. ----------
17-03-17 18:28:11.818 -07 000000610 INF: Cycle	13	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:11.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28454, sync = True, waitForSettling = True)
17-03-17 18:28:11.818 -07 000000610 INF: Z Motor: Moving to -0.130254 mm, started at -0.137013 mm, distance = 6.76 um
17-03-17 18:28:11.818 -07 000000610 INF: FPGA: Xmit ZDACW 28454\n [Z Motor]
17-03-17 18:28:11.818 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:28:11.828 -07 000000610 INF: FPGA: 'ZDACW 28454' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:11.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:11.828 -07 000000438 INF: FPGA: Recv ZDACR 28454
17-03-17 18:28:11.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.988 -07 000000382 INF: FPGA: Recv ZSGSRD 29561
17-03-17 18:28:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:11.998 -07 000000438 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:28:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.008 -07 000000382 INF: FPGA: Recv ZSGSRD 29564
17-03-17 18:28:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.018 -07 000000593 INF: FPGA: Recv ZSGSRD 29566
17-03-17 18:28:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.028 -07 000000438 INF: FPGA: Recv ZSGSRD 29567
17-03-17 18:28:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.038 -07 000000547 INF: FPGA: Recv ZSGSRD 29560
17-03-17 18:28:12.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.048 -07 000000424 INF: FPGA: Recv ZSGSRD 29575
17-03-17 18:28:12.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29564
17-03-17 18:28:12.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:28:12.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:12.078 -07 000000424 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:28:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:12.088 -07 000000382 INF: FPGA: Recv ZPIEZORD 25121
17-03-17 18:28:12.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:12.098 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.8 V.
17-03-17 18:28:12.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29565 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29565 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29560 (-129.4 uncal um), Max = 29575 (-129.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:28:12.098 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29565, posNoise = 10, negNoise = 5
17-03-17 18:28:12.098 -07 000000610 INF: Z Motor: After move to -0.130254, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:12.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:28:12.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:12.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:12.098 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:12.098 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:12.098 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:12.098 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:12.098 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:12.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:12.098 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:12.098 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:12.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:12.098 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:12.108 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:12.108 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:12.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:12.108 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:12.108 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:28:12.108 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:28:12.108 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:28:12.118 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:28:12.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28631 150\n [Camera]
17-03-17 18:28:12.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:12.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:12.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:12.708 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:12.708 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:12.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:28:12.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:12.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:12.708 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:12.708 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:12.708 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:28:12.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28631 778
17-03-17 18:28:13.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:13.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:28:13.108 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:28:13.108 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:13.108 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:28:13.108 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:28:13.108 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:13.118 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:13.118 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:28:13.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:13.118 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:28:13.238 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:13.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:13.238 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:13.238 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:13.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:28:13.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:13.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:13.248 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:13.248 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:13.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:28:13.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:28:13.428 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:13.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28631 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-17 18:28:13.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:13.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130255183982298. ------
17-03-17 18:28:13.438 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:13.438 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13691 mm
17-03-17 18:28:13.438 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:13.438 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:13.448 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:28:13.448 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:28:13.448 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:28:13.448 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:13.448 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29908, sync = True, waitForSettling = False)
17-03-17 18:28:13.448 -07 000000608 INF: Z Motor: Moving to -0.136910 mm, started at -0.130255 mm, distance = -6.65 um
17-03-17 18:28:13.458 -07 000000608 INF: FPGA: Xmit ZDACW 29908\n [Z Motor]
17-03-17 18:28:13.458 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:28:13.468 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:13.468 -07 000000608 INF: FPGA: 'ZDACW 29908' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:28:13.468 -07 000000382 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:28:13.478 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:13.478 -07 000000626 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:13.478 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:13.478 -07 000000618 INF: FPGA: Recv ZDACR 29908
17-03-17 18:28:13.478 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:13.478 -07 000000626 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:28:13.488 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:13.488 -07 000000608 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:28:13.488 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:13.618 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:28:13.618 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:28:13.618 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:13.618 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:28:13.618 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:28:13.618 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:13.628 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:13.628 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:28:13.628 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:28:13.638 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:28:13.648 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:13.648 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:13.858 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:28:13.858 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:28:13.898 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:13.898 -07 000000502 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:28:13.908 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:13.908 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:13.908 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:28:13.908 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 18:28:14.258 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.000345,
17-03-17 18:28:14.858 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:14.858 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:28:14.868 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:14.868 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:14.888 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:14.888 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:14.888 -07 000000626 INF: Y Motor: Moved to 69.0278 after 1439 ms (table move)
17-03-17 18:28:14.888 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136910 mm (DAC = 29908)
17-03-17 18:28:14.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.888 -07 000000438 INF: FPGA: Recv ZSGSRD 30605
17-03-17 18:28:14.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:14.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.898 -07 000000012 INF: FPGA: Recv ZSGSRD 30594
17-03-17 18:28:14.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.908 -07 000000608 INF: FPGA: Recv ZSGSRD 30595
17-03-17 18:28:14.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.918 -07 000000626 INF: FPGA: Recv ZSGSRD 30602
17-03-17 18:28:14.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.928 -07 000000608 INF: FPGA: Recv ZSGSRD 30605
17-03-17 18:28:14.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30600
17-03-17 18:28:14.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.948 -07 000000476 INF: FPGA: Recv ZSGSRD 30606
17-03-17 18:28:14.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:14.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.958 -07 000000502 INF: FPGA: Recv ZSGSRD 30601
17-03-17 18:28:14.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.968 -07 000000502 INF: FPGA: Recv ZSGSRD 30603
17-03-17 18:28:14.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:14.978 -07 000000502 INF: FPGA: Recv ZSGSRD 30597
17-03-17 18:28:14.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.988 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:14.988 -07 000000502 INF: FPGA: Recv ZPIEZORD 26479
17-03-17 18:28:14.998 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:14.998 -07 000000475 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.1 V.
17-03-17 18:28:14.998 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30601 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30602 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30594 (-136.1 uncal um), Max = 30606 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:28:14.998 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30601, posNoise = 5, negNoise = 7
17-03-17 18:28:14.998 -07 000000475 INF: Z Motor: After move to -0.136910, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:14.998 -07 000000475 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:28:14.998 -07 000000475 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:15.048 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:28:15.048 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:15.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:15.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:15.048 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:15.048 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:15.048 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:15.048 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:15.048 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:28:15.048 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:15.048 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:15.048 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:15.068 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:28:15.068 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:28:15.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:15.108 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:15.308 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:15.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:15.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:15.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:28:15.348 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:15.348 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:15.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:28:15.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:28:15.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:15.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:28:15.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:28:15.548 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:15.548 -07 000000593 INF: Autofocus start
17-03-17 18:28:15.548 -07 000000593 INF: MeasureProfile start
17-03-17 18:28:15.548 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:15.558 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:15.558 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:15.558 -07 000000593 INF: MeasureProfile done
17-03-17 18:28:15.558 -07 000000593 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:28:15.558 -07 000000593 INF: Autofocus finished
17-03-17 18:28:15.758 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:15.758 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:28:15.758 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136910667761162. ----------
17-03-17 18:28:15.758 -07 000000610 INF: Cycle	13	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:15.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28386, sync = True, waitForSettling = True)
17-03-17 18:28:15.768 -07 000000610 INF: Z Motor: Moving to -0.129943 mm, started at -0.136911 mm, distance = 6.97 um
17-03-17 18:28:15.768 -07 000000610 INF: FPGA: Xmit ZDACW 28386\n [Z Motor]
17-03-17 18:28:15.768 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:28:15.778 -07 000000610 INF: FPGA: 'ZDACW 28386' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:15.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:15.778 -07 000000502 INF: FPGA: Recv ZDACR 28386
17-03-17 18:28:15.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:15.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.938 -07 000000547 INF: FPGA: Recv ZSGSRD 29517
17-03-17 18:28:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.948 -07 000000438 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:28:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.958 -07 000000502 INF: FPGA: Recv ZSGSRD 29515
17-03-17 18:28:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.968 -07 000000424 INF: FPGA: Recv ZSGSRD 29513
17-03-17 18:28:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.978 -07 000000626 INF: FPGA: Recv ZSGSRD 29516
17-03-17 18:28:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29520
17-03-17 18:28:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:15.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:28:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:16.008 -07 000000424 INF: FPGA: Recv ZSGSRD 29520
17-03-17 18:28:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:16.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29520
17-03-17 18:28:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:16.028 -07 000000424 INF: FPGA: Recv ZSGSRD 29513
17-03-17 18:28:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:16.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:16.038 -07 000000502 INF: FPGA: Recv ZPIEZORD 25053
17-03-17 18:28:16.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:16.048 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.8 V.
17-03-17 18:28:16.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29518 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29518 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29513 (-129.1 uncal um), Max = 29521 (-129.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:28:16.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29518, posNoise = 3, negNoise = 5
17-03-17 18:28:16.048 -07 000000610 INF: Z Motor: After move to -0.129943, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:16.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:28:16.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:16.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:16.048 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:16.048 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:16.048 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:16.048 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:16.048 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:16.048 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:16.048 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:16.048 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:16.048 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:28:16.048 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:16.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:28:16.058 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:16.058 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:16.058 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:16.068 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:28:16.068 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:28:16.068 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:28:16.068 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:28:16.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28563 150\n [Camera]
17-03-17 18:28:16.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:16.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:16.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:16.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:16.668 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:16.668 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:16.668 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:28:16.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:16.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:16.668 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:16.668 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:16.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:28:16.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28563 779
17-03-17 18:28:17.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:17.048 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:28:17.048 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:28:17.048 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:17.048 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:17.048 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:28:17.048 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:28:17.048 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:17.058 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:17.058 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:28:17.058 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:28:17.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:17.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:17.198 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:17.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:17.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:17.338 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:17.338 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:17.338 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:28:17.348 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:17.348 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:28:17.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:28:17.388 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:17.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28563 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:28:17.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:17.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129953246011635. ------
17-03-17 18:28:17.398 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13638 mm
17-03-17 18:28:17.398 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:17.398 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:17.398 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:28:17.398 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:28:17.398 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29792, sync = True, waitForSettling = False)
17-03-17 18:28:17.398 -07 000000382 INF: Z Motor: Moving to -0.136379 mm, started at -0.129953 mm, distance = -6.43 um
17-03-17 18:28:17.398 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:17.408 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:17.408 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:17.408 -07 000000012 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:28:17.418 -07 000000382 INF: FPGA: Xmit ZDACW 29792\n [Z Motor]
17-03-17 18:28:17.418 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:28:17.418 -07 000000424 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:17.418 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:28:17.418 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:17.418 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:28:17.428 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:17.428 -07 000000382 INF: FPGA: 'ZDACW 29792' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:28:17.438 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:17.448 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:17.448 -07 000000480 INF: FPGA: Recv ZDACR 29792
17-03-17 18:28:17.458 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:17.458 -07 000000382 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:28:17.628 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:17.628 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:28:17.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:28:17.718 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:28:17.718 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:17.718 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:28:17.718 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:28:17.718 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:17.728 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:17.728 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:28:17.728 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 18:28:17.738 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:28:17.808 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:28:17.808 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:28:17.848 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:17.848 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:28:17.858 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:17.858 -07 000000424 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:17.858 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:28:17.858 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-17 18:28:18.808 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:18.808 -07 000000547 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:28:18.818 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:18.818 -07 000000424 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:18.838 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:18.838 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:18.838 -07 000000424 INF: Y Motor: Moved to 69.8638 after 1434 ms (table move)
17-03-17 18:28:18.838 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136379 mm (DAC = 29792)
17-03-17 18:28:18.838 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.838 -07 000000424 INF: FPGA: Recv ZSGSRD 30528
17-03-17 18:28:18.848 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:18.848 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.848 -07 000000438 INF: FPGA: Recv ZSGSRD 30518
17-03-17 18:28:18.858 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.858 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.858 -07 000000438 INF: FPGA: Recv ZSGSRD 30507
17-03-17 18:28:18.868 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.868 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.868 -07 000000480 INF: FPGA: Recv ZSGSRD 30526
17-03-17 18:28:18.878 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.878 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.878 -07 000000480 INF: FPGA: Recv ZSGSRD 30530
17-03-17 18:28:18.888 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30521
17-03-17 18:28:18.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.898 -07 000000476 INF: FPGA: Recv ZSGSRD 30519
17-03-17 18:28:18.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.908 -07 000000476 INF: FPGA: Recv ZSGSRD 30516
17-03-17 18:28:18.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30519
17-03-17 18:28:18.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:18.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30517
17-03-17 18:28:18.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.938 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:18.938 -07 000000438 INF: FPGA: Recv ZPIEZORD 26379
17-03-17 18:28:18.948 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:18.948 -07 000000475 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.1 V.
17-03-17 18:28:18.948 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30519 (-135.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 30507 (-135.5 uncal um), Max = 30530 (-135.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 18:28:18.948 -07 000000475 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 10, negNoise = 13
17-03-17 18:28:18.948 -07 000000475 INF: Z Motor: After move to -0.136379, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:18.948 -07 000000475 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:28:18.948 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:18.998 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:28:18.998 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:18.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:18.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:18.998 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:18.998 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:18.998 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:18.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:18.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:18.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:19.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:19.008 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:19.008 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:28:19.008 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:28:19.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:19.058 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:19.258 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:19.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:19.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:19.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 18:28:19.298 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:19.298 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:19.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 18:28:19.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:28:19.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:19.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:19.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:28:19.408 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:19.408 -07 000000475 INF: Autofocus start
17-03-17 18:28:19.408 -07 000000475 INF: MeasureProfile start
17-03-17 18:28:19.408 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:19.418 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:19.418 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:19.418 -07 000000475 INF: MeasureProfile done
17-03-17 18:28:19.418 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:28:19.418 -07 000000475 INF: Autofocus finished
17-03-17 18:28:19.618 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.008536,
17-03-17 18:28:19.618 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:19.618 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:19.618 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136390306577679. ----------
17-03-17 18:28:19.618 -07 000000610 INF: Cycle	13	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:19.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28316, sync = True, waitForSettling = True)
17-03-17 18:28:19.628 -07 000000610 INF: Z Motor: Moving to -0.129622 mm, started at -0.136390 mm, distance = 6.77 um
17-03-17 18:28:19.648 -07 000000610 INF: FPGA: Xmit ZDACW 28316\n [Z Motor]
17-03-17 18:28:19.648 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:28:19.658 -07 000000610 INF: FPGA: 'ZDACW 28316' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:28:19.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:19.658 -07 000000382 INF: FPGA: Recv ZDACR 28316
17-03-17 18:28:19.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.818 -07 000000012 INF: FPGA: Recv ZSGSRD 29469
17-03-17 18:28:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.828 -07 000000626 INF: FPGA: Recv ZSGSRD 29469
17-03-17 18:28:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.838 -07 000000626 INF: FPGA: Recv ZSGSRD 29467
17-03-17 18:28:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.848 -07 000000424 INF: FPGA: Recv ZSGSRD 29467
17-03-17 18:28:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.858 -07 000000012 INF: FPGA: Recv ZSGSRD 29472
17-03-17 18:28:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.868 -07 000000626 INF: FPGA: Recv ZSGSRD 29467
17-03-17 18:28:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.878 -07 000000424 INF: FPGA: Recv ZSGSRD 29467
17-03-17 18:28:19.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.888 -07 000000626 INF: FPGA: Recv ZSGSRD 29468
17-03-17 18:28:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29471
17-03-17 18:28:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:19.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29461
17-03-17 18:28:19.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:19.918 -07 000000012 INF: FPGA: Recv ZPIEZORD 24966
17-03-17 18:28:19.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:19.928 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.9 V.
17-03-17 18:28:19.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29468 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29468 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29461 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:28:19.928 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29468, posNoise = 4, negNoise = 7
17-03-17 18:28:19.928 -07 000000610 INF: Z Motor: After move to -0.129622, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:19.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 18:28:19.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:19.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:19.928 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:19.928 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:19.928 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:19.928 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:19.928 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:19.928 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:19.928 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:19.928 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:19.928 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:19.928 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:19.938 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:19.938 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:19.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:19.938 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:19.948 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:28:19.948 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:28:19.948 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:28:19.948 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:28:19.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28493 150\n [Camera]
17-03-17 18:28:20.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:20.548 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:20.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:20.548 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:20.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:20.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:20.548 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:20.548 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:20.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 18:28:20.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:20.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 18:28:20.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28493 778
17-03-17 18:28:20.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:20.948 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:28:20.948 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:28:20.948 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:20.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:28:20.948 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:28:20.948 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:20.948 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:20.948 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:28:20.948 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:20.958 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:28:21.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:21.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:21.078 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:21.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:21.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:21.078 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:21.088 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:21.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:28:21.088 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:21.088 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:28:21.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:21.268 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:21.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28493 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-17 18:28:21.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:21.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129632035404547. ------
17-03-17 18:28:21.278 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:21.278 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13610 mm
17-03-17 18:28:21.278 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:21.278 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:21.288 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:21.288 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:21.288 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29731, sync = True, waitForSettling = False)
17-03-17 18:28:21.288 -07 000000424 INF: Z Motor: Moving to -0.136100 mm, started at -0.129632 mm, distance = -6.47 um
17-03-17 18:28:21.288 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:28:21.288 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:28:21.298 -07 000000424 INF: FPGA: Xmit ZDACW 29731\n [Z Motor]
17-03-17 18:28:21.298 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:28:21.308 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:21.308 -07 000000424 INF: FPGA: 'ZDACW 29731' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:21.308 -07 000000626 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:28:21.318 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:28:21.318 -07 000000502 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:21.318 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:21.318 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:21.318 -07 000000593 INF: FPGA: Recv ZDACR 29731
17-03-17 18:28:21.318 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:28:21.328 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:21.328 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:28:21.328 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:21.468 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:28:21.468 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:28:21.468 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:21.468 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:28:21.468 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:28:21.468 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:21.478 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:28:21.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:21.478 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:28:21.488 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:28:21.488 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:21.488 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:21.598 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:21.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:21.698 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:28:21.698 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:28:21.738 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:21.738 -07 000000547 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:28:21.748 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:21.748 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:21.748 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:28:21.748 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.179 mm/sec
17-03-17 18:28:22.698 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:22.698 -07 000000547 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:28:22.708 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:22.708 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:22.728 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:22.728 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:22.728 -07 000000502 INF: Y Motor: Moved to 70.6890 after 1440 ms (table move)
17-03-17 18:28:22.728 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136100 mm (DAC = 29731)
17-03-17 18:28:22.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.738 -07 000000626 INF: FPGA: Recv ZSGSRD 30470
17-03-17 18:28:22.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:22.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.738 -07 000000502 INF: FPGA: Recv ZSGSRD 30477
17-03-17 18:28:22.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.748 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.748 -07 000000502 INF: FPGA: Recv ZSGSRD 30470
17-03-17 18:28:22.758 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.758 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.758 -07 000000593 INF: FPGA: Recv ZSGSRD 30477
17-03-17 18:28:22.768 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.768 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.768 -07 000000593 INF: FPGA: Recv ZSGSRD 30477
17-03-17 18:28:22.778 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.778 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.778 -07 000000593 INF: FPGA: Recv ZSGSRD 30478
17-03-17 18:28:22.788 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.788 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.788 -07 000000480 INF: FPGA: Recv ZSGSRD 30477
17-03-17 18:28:22.798 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.798 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.798 -07 000000480 INF: FPGA: Recv ZSGSRD 30477
17-03-17 18:28:22.808 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.808 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.808 -07 000000480 INF: FPGA: Recv ZSGSRD 30474
17-03-17 18:28:22.818 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.818 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:22.818 -07 000000593 INF: FPGA: Recv ZSGSRD 30473
17-03-17 18:28:22.828 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.828 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:22.828 -07 000000480 INF: FPGA: Recv ZPIEZORD 26349
17-03-17 18:28:22.838 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:22.838 -07 000000476 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -9.1 V.
17-03-17 18:28:22.838 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30475 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30477 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30470 (-135.3 uncal um), Max = 30478 (-135.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:28:22.838 -07 000000476 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30475, posNoise = 3, negNoise = 5
17-03-17 18:28:22.838 -07 000000476 INF: Z Motor: After move to -0.136100, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:22.838 -07 000000476 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:28:22.838 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:22.888 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:28:22.888 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:22.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:22.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:22.888 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:22.888 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:22.888 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:22.888 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:22.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:22.898 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:22.898 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:22.898 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:22.908 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:28:22.908 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:28:22.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:22.958 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:23.158 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:23.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:23.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:23.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 18:28:23.198 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:23.198 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:23.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 18:28:23.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:28:23.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:23.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:23.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:28:23.298 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:23.298 -07 000000593 INF: Autofocus start
17-03-17 18:28:23.298 -07 000000593 INF: MeasureProfile start
17-03-17 18:28:23.298 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:23.308 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:23.308 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:23.308 -07 000000593 INF: MeasureProfile done
17-03-17 18:28:23.308 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:28:23.308 -07 000000593 INF: Autofocus finished
17-03-17 18:28:23.508 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:23.508 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:23.508 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.1361012170313. ----------
17-03-17 18:28:23.508 -07 000000610 INF: Cycle	13	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:23.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28238, sync = True, waitForSettling = True)
17-03-17 18:28:23.518 -07 000000610 INF: Z Motor: Moving to -0.129265 mm, started at -0.136101 mm, distance = 6.84 um
17-03-17 18:28:23.518 -07 000000610 INF: FPGA: Xmit ZDACW 28238\n [Z Motor]
17-03-17 18:28:23.518 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:28:23.528 -07 000000610 INF: FPGA: 'ZDACW 28238' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:23.528 -07 000000626 INF: FPGA: Recv ZDACR 28238
17-03-17 18:28:23.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.688 -07 000000476 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:28:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.698 -07 000000626 INF: FPGA: Recv ZSGSRD 29408
17-03-17 18:28:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.708 -07 000000476 INF: FPGA: Recv ZSGSRD 29410
17-03-17 18:28:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.718 -07 000000547 INF: FPGA: Recv ZSGSRD 29409
17-03-17 18:28:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.728 -07 000000476 INF: FPGA: Recv ZSGSRD 29415
17-03-17 18:28:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.738 -07 000000626 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:28:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.748 -07 000000476 INF: FPGA: Recv ZSGSRD 29410
17-03-17 18:28:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.758 -07 000000502 INF: FPGA: Recv ZSGSRD 29415
17-03-17 18:28:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.768 -07 000000475 INF: FPGA: Recv ZSGSRD 29412
17-03-17 18:28:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:23.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29414
17-03-17 18:28:23.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:23.788 -07 000000475 INF: FPGA: Recv ZPIEZORD 24919
17-03-17 18:28:23.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:23.798 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -9.9 V.
17-03-17 18:28:23.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29413 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29413 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29408 (-128.5 uncal um), Max = 29420 (-128.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:28:23.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29413, posNoise = 7, negNoise = 5
17-03-17 18:28:23.798 -07 000000610 INF: Z Motor: After move to -0.129265, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:23.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:28:23.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:23.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:23.798 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:23.798 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:23.798 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:23.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:23.798 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:23.798 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:23.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:23.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:23.798 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:23.798 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:23.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:23.808 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:23.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:28:23.808 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:23.818 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:28:23.818 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:28:23.818 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:28:23.818 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:28:23.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28415 150\n [Camera]
17-03-17 18:28:24.028 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:24.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:24.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:24.418 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:24.418 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:24.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:28:24.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:24.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:24.418 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:24.418 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:24.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:28:24.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28415 778
17-03-17 18:28:24.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:28:24.808 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:28:24.808 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:28:24.808 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:24.808 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:24.808 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:28:24.808 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:28:24.808 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:24.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:28:24.818 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:24.818 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:28:24.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:24.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:24.948 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:24.948 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:24.948 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) start.
17-03-17 18:28:24.948 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:24.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:24.948 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:24.948 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:24.948 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) start.
17-03-17 18:28:24.998 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.028963,
17-03-17 18:28:25.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:25.138 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:25.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28415 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:28:25.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:25.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.12927870373675. ------
17-03-17 18:28:25.148 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:25.148 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13592 mm
17-03-17 18:28:25.148 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:25.148 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:25.148 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:28:25.148 -07 000000438 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:28:25.148 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29692, sync = True, waitForSettling = False)
17-03-17 18:28:25.148 -07 000000547 INF: Z Motor: Moving to -0.135921 mm, started at -0.129279 mm, distance = -6.64 um
17-03-17 18:28:25.158 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:25.158 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:25.158 -07 000000593 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:28:25.168 -07 000000547 INF: FPGA: Xmit ZDACW 29692\n [Z Motor]
17-03-17 18:28:25.168 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:28:25.168 -07 000000438 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:25.168 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:28:25.168 -07 000000438 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:25.168 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:28:25.178 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:25.178 -07 000000547 INF: FPGA: 'ZDACW 29692' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:28:25.188 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:25.188 -07 000000626 INF: FPGA: Recv ZDACR 29692
17-03-17 18:28:25.198 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:25.198 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:25.198 -07 000000547 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:28:25.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:28:25.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:28:25.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:25.338 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:28:25.338 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:28:25.338 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:25.348 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:28:25.348 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:28:25.348 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:28:25.348 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:28:25.378 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:25.378 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:28:25.568 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:28:25.568 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 401 ms overall
17-03-17 18:28:25.608 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:25.608 -07 000000547 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:28:25.618 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:25.618 -07 000000438 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:25.618 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:28:25.618 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.104 mm/sec
17-03-17 18:28:26.568 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:26.568 -07 000000382 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:28:26.578 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:26.578 -07 000000438 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:26.598 -07 000000438 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:26.598 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:28:26.598 -07 000000438 INF: Y Motor: Moved to 71.5200 after 1443 ms (table move)
17-03-17 18:28:26.598 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:26.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:26.598 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135921 mm (DAC = 29692)
17-03-17 18:28:26.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.598 -07 000000547 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:28:26.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:26.608 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.608 -07 000000547 INF: FPGA: Recv ZSGSRD 30435
17-03-17 18:28:26.618 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.618 -07 000000547 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:28:26.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.628 -07 000000547 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:28:26.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.638 -07 000000438 INF: FPGA: Recv ZSGSRD 30450
17-03-17 18:28:26.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.648 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30456
17-03-17 18:28:26.658 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.658 -07 000000438 INF: FPGA: Recv ZSGSRD 30451
17-03-17 18:28:26.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.668 -07 000000438 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:28:26.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:28:26.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:26.688 -07 000000476 INF: FPGA: Recv ZSGSRD 30445
17-03-17 18:28:26.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.698 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:26.698 -07 000000476 INF: FPGA: Recv ZPIEZORD 26331
17-03-17 18:28:26.708 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:26.708 -07 000000424 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.1 V.
17-03-17 18:28:26.708 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30447 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30448 (-135.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30435 (-135.1 uncal um), Max = 30456 (-135.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 18:28:26.708 -07 000000424 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30447, posNoise = 9, negNoise = 12
17-03-17 18:28:26.708 -07 000000424 INF: Z Motor: After move to -0.135921, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:26.708 -07 000000424 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:28:26.708 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:26.758 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:28:26.758 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:26.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:26.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:26.758 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:26.758 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:26.758 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:26.758 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:26.758 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:26.758 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:26.768 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:26.768 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:26.778 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:28:26.778 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:28:26.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:26.818 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:27.018 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:27.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:27.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:27.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:28:27.058 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:27.058 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:27.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:28:27.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:28:27.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:27.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:27.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:28:27.258 -07 000000438 INF: Autofocus start
17-03-17 18:28:27.258 -07 000000438 INF: MeasureProfile start
17-03-17 18:28:27.268 -07 000000438 INF: MeasureProfile done
17-03-17 18:28:27.268 -07 000000438 INF: X=8  Z correction [um]=0.01453479
17-03-17 18:28:27.268 -07 000000438 INF: Autofocus finished
17-03-17 18:28:27.278 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:27.278 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:27.288 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:28:27.308 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:27.508 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:27.508 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:28:27.508 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.135921339091331. ----------
17-03-17 18:28:27.508 -07 000000610 INF: Cycle	13	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:27.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28207, sync = True, waitForSettling = True)
17-03-17 18:28:27.518 -07 000000610 INF: Z Motor: Moving to -0.129123 mm, started at -0.135921 mm, distance = 6.80 um
17-03-17 18:28:27.518 -07 000000610 INF: FPGA: Xmit ZDACW 28207\n [Z Motor]
17-03-17 18:28:27.518 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:28:27.528 -07 000000610 INF: FPGA: 'ZDACW 28207' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:27.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:27.528 -07 000000593 INF: FPGA: Recv ZDACR 28207
17-03-17 18:28:27.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:27.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.688 -07 000000593 INF: FPGA: Recv ZSGSRD 29401
17-03-17 18:28:27.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:27.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29395
17-03-17 18:28:27.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.708 -07 000000438 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:28:27.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29384
17-03-17 18:28:27.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29390
17-03-17 18:28:27.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:28:27.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.748 -07 000000382 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:28:27.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.758 -07 000000382 INF: FPGA: Recv ZSGSRD 29386
17-03-17 18:28:27.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.768 -07 000000382 INF: FPGA: Recv ZSGSRD 29397
17-03-17 18:28:27.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:27.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29388
17-03-17 18:28:27.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:27.788 -07 000000382 INF: FPGA: Recv ZPIEZORD 24914
17-03-17 18:28:27.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:27.798 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.8 V.
17-03-17 18:28:27.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29391 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29389 (-128.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29383 (-128.3 uncal um), Max = 29401 (-128.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:28:27.798 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29391, posNoise = 10, negNoise = 8
17-03-17 18:28:27.798 -07 000000610 INF: Z Motor: After move to -0.129123, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:27.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:28:27.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:27.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:27.798 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:27.798 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:27.798 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:27.798 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:27.798 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:27.798 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:27.798 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:27.798 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:27.798 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:27.798 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:27.808 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:28:27.808 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:27.808 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:28:27.808 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:27.818 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:28:27.818 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:28:27.818 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:28:27.818 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:28:27.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28384 150\n [Camera]
17-03-17 18:28:28.028 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:28.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:28.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:28.418 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:28.418 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:28.418 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:28:28.418 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:28.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:28.418 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:28.418 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:28.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:28:28.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28384 778
17-03-17 18:28:28.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:28.818 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:28:28.818 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:28:28.818 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:28.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:28:28.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:28:28.818 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:28.818 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:28.818 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:28:28.818 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:28.828 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:28:28.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:28.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:28.948 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:28.948 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:28.948 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:28:28.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:28.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:28.948 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:28.948 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:28.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 18:28:29.138 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:29.138 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:29.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28384 150' command took 2 ms to send, 1307 ms to get response, and 1316 ms overall
17-03-17 18:28:29.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:29.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129137371069631. ------
17-03-17 18:28:29.148 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:29.148 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13513 mm
17-03-17 18:28:29.148 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:29.148 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29520, sync = True, waitForSettling = False)
17-03-17 18:28:29.148 -07 000000012 INF: Z Motor: Moving to -0.135134 mm, started at -0.129137 mm, distance = -6.00 um
17-03-17 18:28:29.148 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:28:29.148 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:28:29.148 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:29.158 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:29.158 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:29.158 -07 000000618 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:28:29.168 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:28:29.168 -07 000000502 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:29.168 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:29.168 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:28:29.168 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:29.178 -07 000000012 INF: FPGA: Xmit ZDACW 29520\n [Z Motor]
17-03-17 18:28:29.178 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:28:29.188 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:29.188 -07 000000012 INF: FPGA: 'ZDACW 29520' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 18:28:29.198 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:29.198 -07 000000618 INF: FPGA: Recv ZDACR 29520
17-03-17 18:28:29.208 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:28:29.208 -07 000000012 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:28:29.348 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:28:29.348 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:28:29.348 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:29.358 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:28:29.358 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:28:29.358 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:29.358 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:29.358 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:28:29.358 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:28:29.368 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:28:29.368 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:29.368 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 18:28:29.558 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:28:29.558 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:28:29.598 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:29.598 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:28:29.608 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:29.608 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:29.608 -07 000000502 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:28:29.608 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:28:30.358 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.031682,
17-03-17 18:28:30.558 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:30.558 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:28:30.568 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.568 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:30.588 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:30.588 -07 000000502 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:30.588 -07 000000502 INF: Y Motor: Moved to 72.3501 after 1434 ms (table move)
17-03-17 18:28:30.588 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135134 mm (DAC = 29520)
17-03-17 18:28:30.588 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30326
17-03-17 18:28:30.598 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:28:30.598 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.598 -07 000000618 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:28:30.608 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.608 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.608 -07 000000618 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:28:30.618 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.618 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.618 -07 000000618 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:28:30.628 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.628 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.628 -07 000000618 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:28:30.638 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.638 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.638 -07 000000618 INF: FPGA: Recv ZSGSRD 30329
17-03-17 18:28:30.648 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.648 -07 000000480 INF: FPGA: Recv ZSGSRD 30326
17-03-17 18:28:30.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.658 -07 000000618 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:28:30.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.668 -07 000000382 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:28:30.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:30.678 -07 000000618 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:28:30.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.688 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:30.688 -07 000000382 INF: FPGA: Recv ZPIEZORD 26182
17-03-17 18:28:30.698 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:30.698 -07 000000476 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.1 V.
17-03-17 18:28:30.698 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30324 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30325 (-134.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30320 (-134.3 uncal um), Max = 30329 (-134.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:28:30.698 -07 000000476 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30324, posNoise = 5, negNoise = 4
17-03-17 18:28:30.698 -07 000000476 INF: Z Motor: After move to -0.135134, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:30.698 -07 000000476 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:28:30.698 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:30.748 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:28:30.748 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:30.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:30.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:30.748 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:30.748 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:30.748 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:30.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:30.758 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:28:30.758 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:30.758 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:30.758 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:30.758 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:28:30.768 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:28:30.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:30.808 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:31.008 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:31.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:31.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:31.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1479096648, 0x0, 559484976) start.
17-03-17 18:28:31.048 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:31.048 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:31.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:28:31.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1479096648, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:28:31.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:31.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:31.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:28:31.148 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:31.148 -07 000000547 INF: Autofocus start
17-03-17 18:28:31.148 -07 000000547 INF: MeasureProfile start
17-03-17 18:28:31.148 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:31.158 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:31.158 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:31.158 -07 000000547 INF: MeasureProfile done
17-03-17 18:28:31.158 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:28:31.158 -07 000000547 INF: Autofocus finished
17-03-17 18:28:31.358 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:31.358 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:31.358 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135131160997894. ----------
17-03-17 18:28:31.358 -07 000000610 INF: Cycle	13	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:31.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28044, sync = True, waitForSettling = True)
17-03-17 18:28:31.368 -07 000000610 INF: Z Motor: Moving to -0.128377 mm, started at -0.135131 mm, distance = 6.75 um
17-03-17 18:28:31.368 -07 000000610 INF: FPGA: Xmit ZDACW 28044\n [Z Motor]
17-03-17 18:28:31.368 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:28:31.378 -07 000000610 INF: FPGA: 'ZDACW 28044' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:31.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:31.378 -07 000000438 INF: FPGA: Recv ZDACR 28044
17-03-17 18:28:31.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.538 -07 000000424 INF: FPGA: Recv ZSGSRD 29269
17-03-17 18:28:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.548 -07 000000626 INF: FPGA: Recv ZSGSRD 29272
17-03-17 18:28:31.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.558 -07 000000438 INF: FPGA: Recv ZSGSRD 29268
17-03-17 18:28:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.568 -07 000000438 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:28:31.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.578 -07 000000012 INF: FPGA: Recv ZSGSRD 29269
17-03-17 18:28:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.588 -07 000000012 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:28:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.598 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:31.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29271
17-03-17 18:28:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.608 -07 000000480 INF: FPGA: Recv ZSGSRD 29276
17-03-17 18:28:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.618 -07 000000593 INF: FPGA: Recv ZSGSRD 29273
17-03-17 18:28:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:31.628 -07 000000618 INF: FPGA: Recv ZSGSRD 29268
17-03-17 18:28:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:31.638 -07 000000618 INF: FPGA: Recv ZPIEZORD 24784
17-03-17 18:28:31.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:31.648 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.279 V. Piezo Error = -9.8 V.
17-03-17 18:28:31.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29271 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29272 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29268 (-127.6 uncal um), Max = 29276 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:28:31.648 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29271, posNoise = 5, negNoise = 3
17-03-17 18:28:31.648 -07 000000610 INF: Z Motor: After move to -0.128377, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:31.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:28:31.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:31.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:31.648 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:31.648 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:31.648 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:31.648 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:31.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:31.648 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:31.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:31.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:31.648 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:31.648 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:31.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:31.658 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:31.658 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:31.658 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:31.668 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:28:31.668 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:28:31.668 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:28:31.668 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:28:31.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28221 150\n [Camera]
17-03-17 18:28:31.868 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:32.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:32.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:32.268 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:32.268 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:32.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:28:32.268 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:32.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:32.268 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:32.268 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:32.268 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:28:32.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28221 778
17-03-17 18:28:32.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:32.668 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:28:32.668 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:28:32.668 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:32.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:28:32.668 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:28:32.668 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:32.668 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:32.668 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:28:32.668 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:32.678 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:28:32.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:32.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:32.798 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:32.798 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:32.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:28:32.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:32.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:32.798 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:32.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:32.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:28:32.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:32.988 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:32.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28221 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-17 18:28:32.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:32.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.12836646561262. ------
17-03-17 18:28:32.998 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:32.998 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13499 mm
17-03-17 18:28:32.998 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:32.998 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:32.998 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:28:32.998 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:28:32.998 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29489, sync = True, waitForSettling = False)
17-03-17 18:28:32.998 -07 000000012 INF: Z Motor: Moving to -0.134992 mm, started at -0.128366 mm, distance = -6.63 um
17-03-17 18:28:33.008 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:33.008 -07 000000012 INF: FPGA: Xmit ZDACW 29489\n [Z Motor]
17-03-17 18:28:33.008 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:28:33.018 -07 000000012 INF: FPGA: 'ZDACW 29489' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:28:33.018 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:33.018 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:28:33.028 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:33.028 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:28:33.028 -07 000000476 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:33.028 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:33.028 -07 000000476 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:28:33.038 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:33.038 -07 000000424 INF: FPGA: Recv ZDACR 29489
17-03-17 18:28:33.048 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:33.048 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:33.048 -07 000000012 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:28:33.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:28:33.188 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:28:33.188 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:33.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:28:33.188 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:28:33.188 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:33.188 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:33.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:28:33.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:28:33.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:28:33.228 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:33.228 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:28:33.418 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:28:33.418 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:28:33.458 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:33.458 -07 000000438 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:28:33.468 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:33.468 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:33.468 -07 000000476 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:28:33.468 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:28:34.418 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:34.418 -07 000000382 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:28:34.428 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:34.428 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:34.448 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:34.448 -07 000000476 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:34.448 -07 000000476 INF: Y Motor: Moved to 73.1768 after 1445 ms (table move)
17-03-17 18:28:34.448 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134992 mm (DAC = 29489)
17-03-17 18:28:34.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.448 -07 000000438 INF: FPGA: Recv ZSGSRD 30305
17-03-17 18:28:34.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:34.458 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.458 -07 000000547 INF: FPGA: Recv ZSGSRD 30297
17-03-17 18:28:34.468 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.468 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.468 -07 000000424 INF: FPGA: Recv ZSGSRD 30295
17-03-17 18:28:34.478 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30299
17-03-17 18:28:34.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.488 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.488 -07 000000424 INF: FPGA: Recv ZSGSRD 30312
17-03-17 18:28:34.498 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.498 -07 000000618 INF: FPGA: Recv ZSGSRD 30304
17-03-17 18:28:34.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.508 -07 000000438 INF: FPGA: Recv ZSGSRD 30306
17-03-17 18:28:34.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30307
17-03-17 18:28:34.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30300
17-03-17 18:28:34.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:34.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30301
17-03-17 18:28:34.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.548 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:34.548 -07 000000547 INF: FPGA: Recv ZPIEZORD 26152
17-03-17 18:28:34.558 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:34.558 -07 000000480 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.1 V.
17-03-17 18:28:34.558 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30303 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30302 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30295 (-134.2 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:28:34.558 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30303, posNoise = 9, negNoise = 8
17-03-17 18:28:34.558 -07 000000480 INF: Z Motor: After move to -0.134992, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:34.558 -07 000000480 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:28:34.558 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:34.608 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 18:28:34.608 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:34.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:34.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:34.608 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:34.608 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:34.608 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:34.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:34.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:34.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:34.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:28:34.618 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:34.628 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:28:34.628 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:28:34.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:34.678 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:34.878 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:34.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:34.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:34.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178210064, 0x0, 559484976) start.
17-03-17 18:28:34.918 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:34.918 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:34.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 18:28:34.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178210064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:28:34.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:34.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:28:34.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:28:35.018 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:35.018 -07 000000438 INF: Autofocus start
17-03-17 18:28:35.018 -07 000000438 INF: MeasureProfile start
17-03-17 18:28:35.028 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:35.028 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:28:35.028 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:35.038 -07 000000438 INF: MeasureProfile done
17-03-17 18:28:35.038 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:28:35.038 -07 000000438 INF: Autofocus finished
17-03-17 18:28:35.228 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:35.228 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:28:35.228 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134996252542917. ----------
17-03-17 18:28:35.238 -07 000000610 INF: Cycle	13	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:35.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27997, sync = True, waitForSettling = True)
17-03-17 18:28:35.238 -07 000000610 INF: Z Motor: Moving to -0.128162 mm, started at -0.134996 mm, distance = 6.83 um
17-03-17 18:28:35.238 -07 000000610 INF: FPGA: Xmit ZDACW 27997\n [Z Motor]
17-03-17 18:28:35.238 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:28:35.248 -07 000000610 INF: FPGA: 'ZDACW 27997' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:28:35.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:35.248 -07 000000476 INF: FPGA: Recv ZDACR 27997
17-03-17 18:28:35.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.408 -07 000000424 INF: FPGA: Recv ZSGSRD 29243
17-03-17 18:28:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.418 -07 000000424 INF: FPGA: Recv ZSGSRD 29241
17-03-17 18:28:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.428 -07 000000382 INF: FPGA: Recv ZSGSRD 29240
17-03-17 18:28:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29238
17-03-17 18:28:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.448 -07 000000424 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:28:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29241
17-03-17 18:28:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:28:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.478 -07 000000382 INF: FPGA: Recv ZSGSRD 29242
17-03-17 18:28:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29240
17-03-17 18:28:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:35.498 -07 000000502 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:28:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:35.508 -07 000000424 INF: FPGA: Recv ZPIEZORD 24780
17-03-17 18:28:35.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:35.518 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.8 V.
17-03-17 18:28:35.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29240 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29240 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29237 (-127.4 uncal um), Max = 29243 (-127.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:28:35.518 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29240, posNoise = 3, negNoise = 3
17-03-17 18:28:35.518 -07 000000610 INF: Z Motor: After move to -0.128162, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:35.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:28:35.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:35.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:35.518 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:35.518 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:35.518 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:35.518 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:35.518 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:35.518 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:35.518 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:28:35.518 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:35.518 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:28:35.518 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:35.528 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:35.528 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:35.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:35.528 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:35.538 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:28:35.538 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:28:35.538 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:28:35.538 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:28:35.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28173 150\n [Camera]
17-03-17 18:28:35.718 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 4.011254,
17-03-17 18:28:35.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:28:36.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:36.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:36.128 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:36.128 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:36.128 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:28:36.138 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:36.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:36.138 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:36.138 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:36.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:28:36.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28173 778
17-03-17 18:28:36.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:36.528 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:28:36.528 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:28:36.528 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:36.538 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:36.538 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:28:36.538 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:28:36.538 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:28:36.538 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:36.538 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:36.548 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:28:36.598 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:36.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:36.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:28:36.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:28:36.668 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:36.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:28:36.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:28:36.798 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:36.798 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:36.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:28:36.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:36.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:28:36.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:28:36.858 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:36.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28173 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:28:36.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:36.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128167315036225. ------
17-03-17 18:28:36.858 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:36.858 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13460 mm
17-03-17 18:28:36.858 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:36.858 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:28:36.858 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:28:36.858 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29404, sync = True, waitForSettling = False)
17-03-17 18:28:36.858 -07 000000424 INF: Z Motor: Moving to -0.134603 mm, started at -0.128167 mm, distance = -6.44 um
17-03-17 18:28:36.868 -07 000000424 INF: FPGA: Xmit ZDACW 29404\n [Z Motor]
17-03-17 18:28:36.868 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:36.868 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:28:36.868 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:28:36.878 -07 000000424 INF: FPGA: 'ZDACW 29404' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:36.878 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:36.878 -07 000000012 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:28:36.888 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:36.888 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:28:36.888 -07 000000382 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:36.888 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:36.888 -07 000000382 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:28:36.898 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:36.898 -07 000000012 INF: FPGA: Recv ZDACR 29404
17-03-17 18:28:36.908 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:36.908 -07 000000424 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:28:36.908 -07 000000424 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:28:37.088 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:37.088 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:28:37.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:28:37.198 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:28:37.198 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:37.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:28:37.198 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:28:37.198 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:37.198 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:37.208 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:37.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 18:28:37.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:28:37.278 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:28:37.278 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:28:37.308 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:37.308 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:28:37.318 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:37.318 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:37.318 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:28:37.318 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.131 mm/sec
17-03-17 18:28:38.268 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:38.268 -07 000000475 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:28:38.278 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:38.278 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:38.288 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:38.288 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:38.288 -07 000000382 INF: Y Motor: Moved to 74.0088 after 1425 ms (table move)
17-03-17 18:28:38.288 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134603 mm (DAC = 29404)
17-03-17 18:28:38.288 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.298 -07 000000618 INF: FPGA: Recv ZSGSRD 30245
17-03-17 18:28:38.298 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:28:38.298 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.298 -07 000000626 INF: FPGA: Recv ZSGSRD 30244
17-03-17 18:28:38.308 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:38.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.308 -07 000000618 INF: FPGA: Recv ZSGSRD 30233
17-03-17 18:28:38.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.318 -07 000000475 INF: FPGA: Recv ZSGSRD 30244
17-03-17 18:28:38.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.328 -07 000000626 INF: FPGA: Recv ZSGSRD 30244
17-03-17 18:28:38.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.338 -07 000000476 INF: FPGA: Recv ZSGSRD 30244
17-03-17 18:28:38.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.348 -07 000000618 INF: FPGA: Recv ZSGSRD 30254
17-03-17 18:28:38.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.358 -07 000000476 INF: FPGA: Recv ZSGSRD 30236
17-03-17 18:28:38.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30245
17-03-17 18:28:38.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:38.378 -07 000000475 INF: FPGA: Recv ZSGSRD 30240
17-03-17 18:28:38.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.388 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:38.388 -07 000000618 INF: FPGA: Recv ZPIEZORD 26134
17-03-17 18:28:38.398 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:38.398 -07 000000547 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -9.0 V.
17-03-17 18:28:38.398 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30243 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30244 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30233 (-133.8 uncal um), Max = 30254 (-133.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:28:38.398 -07 000000547 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30243, posNoise = 11, negNoise = 10
17-03-17 18:28:38.398 -07 000000547 INF: Z Motor: After move to -0.134603, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:38.398 -07 000000547 INF: Z Motor: Settle wait time = 1429 ms, measure time = 101 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:28:38.398 -07 000000547 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:38.448 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:28:38.448 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:38.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:38.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:38.448 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:38.448 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:38.448 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:38.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:38.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:38.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:38.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:28:38.458 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:38.458 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:28:38.458 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:28:38.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:38.508 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:38.708 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:38.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:38.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:38.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 18:28:38.748 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:38.748 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:38.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:28:38.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:28:38.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:38.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:38.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:28:38.848 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:38.848 -07 000000547 INF: Autofocus start
17-03-17 18:28:38.848 -07 000000547 INF: MeasureProfile start
17-03-17 18:28:38.848 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:38.858 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:28:38.858 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:38.858 -07 000000547 INF: MeasureProfile done
17-03-17 18:28:38.858 -07 000000547 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:28:38.858 -07 000000547 INF: Autofocus finished
17-03-17 18:28:39.058 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:39.058 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:39.068 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134610799814412. ----------
17-03-17 18:28:39.068 -07 000000610 INF: Cycle	13	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:39.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27899, sync = True, waitForSettling = True)
17-03-17 18:28:39.068 -07 000000610 INF: Z Motor: Moving to -0.127713 mm, started at -0.134611 mm, distance = 6.90 um
17-03-17 18:28:39.068 -07 000000610 INF: FPGA: Xmit ZDACW 27899\n [Z Motor]
17-03-17 18:28:39.068 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:28:39.078 -07 000000610 INF: FPGA: 'ZDACW 27899' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:28:39.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:39.078 -07 000000475 INF: FPGA: Recv ZDACR 27899
17-03-17 18:28:39.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:39.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.238 -07 000000547 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:28:39.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:39.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29172
17-03-17 18:28:39.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:28:39.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29168
17-03-17 18:28:39.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:28:39.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:28:39.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29167
17-03-17 18:28:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29169
17-03-17 18:28:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.318 -07 000000618 INF: FPGA: Recv ZSGSRD 29172
17-03-17 18:28:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:39.328 -07 000000382 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:28:39.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:39.338 -07 000000618 INF: FPGA: Recv ZPIEZORD 24719
17-03-17 18:28:39.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:39.348 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.8 V.
17-03-17 18:28:39.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29171 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29171 (-127.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29167 (-126.9 uncal um), Max = 29176 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:28:39.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29171, posNoise = 5, negNoise = 4
17-03-17 18:28:39.348 -07 000000610 INF: Z Motor: After move to -0.127713, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:39.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:28:39.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:39.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:39.348 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:39.348 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:39.348 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:39.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:39.348 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:39.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:39.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:39.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:39.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:28:39.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:39.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:39.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:39.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:28:39.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:39.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:28:39.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:28:39.368 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:28:39.368 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:28:39.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28076 150\n [Camera]
17-03-17 18:28:39.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:39.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:39.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:39.968 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:39.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:39.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:39.968 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:39.968 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:39.968 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1412657424, 0x0, 391868352) start.
17-03-17 18:28:39.978 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:39.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1448079688, 0x0, 418435064) start.
17-03-17 18:28:40.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28076 778
17-03-17 18:28:40.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:40.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1448079688, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:28:40.348 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:28:40.458 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:40.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1412657424, 0x0, 391868352) end. Duration was 483 ms.
17-03-17 18:28:40.458 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 484 ms.
17-03-17 18:28:40.458 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:40.458 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:40.458 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:40.458 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 18:28:40.468 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-17 18:28:40.498 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:40.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:40.498 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:40.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:40.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:40.508 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:40.508 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:40.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:28:40.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:40.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:28:40.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:28:40.688 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:40.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28076 150' command took 2 ms to send, 1308 ms to get response, and 1316 ms overall
17-03-17 18:28:40.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:28:40.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127724044398444. ------
17-03-17 18:28:40.698 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:40.698 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13398 mm
17-03-17 18:28:40.698 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:28:40.698 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:40.698 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29267, sync = True, waitForSettling = False)
17-03-17 18:28:40.698 -07 000000476 INF: Z Motor: Moving to -0.133976 mm, started at -0.127724 mm, distance = -6.25 um
17-03-17 18:28:40.698 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:28:40.698 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:28:40.708 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:40.708 -07 000000476 INF: FPGA: Xmit ZDACW 29267\n [Z Motor]
17-03-17 18:28:40.708 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:28:40.718 -07 000000476 INF: FPGA: 'ZDACW 29267' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:40.718 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:40.718 -07 000000618 INF: FPGA: Recv ZDACR 29267
17-03-17 18:28:40.728 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:40.728 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:40.728 -07 000000476 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 18:28:40.728 -07 000000431 INF: FPGA: Recv YRDPOS 151571
17-03-17 18:28:40.738 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:28:40.738 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:28:40.738 -07 000000382 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:40.738 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:28:40.738 -07 000000382 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:28:40.748 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:28:40.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:28:40.888 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:28:40.888 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:40.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:28:40.888 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:28:40.888 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:40.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:40.898 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:28:40.898 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:28:40.908 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:28:40.938 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:28:40.938 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 234 ms overall
17-03-17 18:28:41.078 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.974486,
17-03-17 18:28:41.118 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:28:41.118 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:28:41.138 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:41.148 -07 000000480 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:28:41.148 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:28:41.148 -07 000000382 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:41.148 -07 000000382 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:28:41.148 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 18:28:41.598 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:41.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 12. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:42.098 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:42.098 -07 000000438 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:28:42.108 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:42.108 -07 000000382 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:42.118 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:42.118 -07 000000382 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:28:42.118 -07 000000382 INF: Y Motor: Moved to 74.8325 after 1415 ms (table move)
17-03-17 18:28:42.118 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133976 mm (DAC = 29267)
17-03-17 18:28:42.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.128 -07 000000438 INF: FPGA: Recv ZSGSRD 30146
17-03-17 18:28:42.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:28:42.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.128 -07 000000626 INF: FPGA: Recv ZSGSRD 30139
17-03-17 18:28:42.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:42.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.138 -07 000000626 INF: FPGA: Recv ZSGSRD 30135
17-03-17 18:28:42.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.148 -07 000000382 INF: FPGA: Recv ZSGSRD 30144
17-03-17 18:28:42.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.158 -07 000000502 INF: FPGA: Recv ZSGSRD 30145
17-03-17 18:28:42.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.168 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30140
17-03-17 18:28:42.178 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.178 -07 000000502 INF: FPGA: Recv ZSGSRD 30142
17-03-17 18:28:42.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30146
17-03-17 18:28:42.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.198 -07 000000626 INF: FPGA: Recv ZSGSRD 30153
17-03-17 18:28:42.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:42.208 -07 000000476 INF: FPGA: Recv ZSGSRD 30147
17-03-17 18:28:42.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.218 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:42.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 26018
17-03-17 18:28:42.228 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.228 -07 000000475 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.1 V.
17-03-17 18:28:42.228 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30144 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30144 (-133.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30135 (-133.1 uncal um), Max = 30153 (-133.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:28:42.228 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30144, posNoise = 9, negNoise = 9
17-03-17 18:28:42.228 -07 000000475 INF: Z Motor: After move to -0.133976, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:42.228 -07 000000475 INF: Z Motor: Settle wait time = 1420 ms, measure time = 101 ms (allowed 150 ms), total time = 1521 ms
17-03-17 18:28:42.228 -07 000000475 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:28:42.278 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 18:28:42.278 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:28:42.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:42.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:42.278 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:42.278 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:42.278 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:28:42.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:42.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:28:42.278 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:28:42.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:42.288 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:28:42.298 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:28:42.298 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:28:42.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:28:42.348 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:28:42.548 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:28:42.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:28:42.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:28:42.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 18:28:42.588 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:28:42.588 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:28:42.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:28:42.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:28:42.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:42.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:28:42.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:28:42.688 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:28:42.688 -07 000000626 INF: Autofocus start
17-03-17 18:28:42.688 -07 000000626 INF: MeasureProfile start
17-03-17 18:28:42.688 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:28:42.698 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:28:42.698 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:28:42.698 -07 000000626 INF: MeasureProfile done
17-03-17 18:28:42.698 -07 000000626 INF: X=38  Z correction [um]=0.1588464
17-03-17 18:28:42.698 -07 000000626 INF: Autofocus finished
17-03-17 18:28:42.898 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:28:42.898 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:28:42.908 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.133974802812377. ----------
17-03-17 18:28:42.908 -07 000000610 INF: Cycle	13	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:28:42.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27814, sync = True, waitForSettling = True)
17-03-17 18:28:42.908 -07 000000610 INF: Z Motor: Moving to -0.127324 mm, started at -0.133975 mm, distance = 6.65 um
17-03-17 18:28:42.908 -07 000000610 INF: FPGA: Xmit ZDACW 27814\n [Z Motor]
17-03-17 18:28:42.908 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:28:42.918 -07 000000610 INF: FPGA: 'ZDACW 27814' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:42.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:28:42.918 -07 000000626 INF: FPGA: Recv ZDACR 27814
17-03-17 18:28:42.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:42.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:28:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.078 -07 000000626 INF: FPGA: Recv ZSGSRD 29112
17-03-17 18:28:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:43.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29111
17-03-17 18:28:43.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.098 -07 000000475 INF: FPGA: Recv ZSGSRD 29107
17-03-17 18:28:43.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29107
17-03-17 18:28:43.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.118 -07 000000476 INF: FPGA: Recv ZSGSRD 29108
17-03-17 18:28:43.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.128 -07 000000475 INF: FPGA: Recv ZSGSRD 29108
17-03-17 18:28:43.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.138 -07 000000382 INF: FPGA: Recv ZSGSRD 29109
17-03-17 18:28:43.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.148 -07 000000626 INF: FPGA: Recv ZSGSRD 29108
17-03-17 18:28:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.158 -07 000000476 INF: FPGA: Recv ZSGSRD 29108
17-03-17 18:28:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:28:43.168 -07 000000382 INF: FPGA: Recv ZSGSRD 29111
17-03-17 18:28:43.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:28:43.178 -07 000000475 INF: FPGA: Recv ZPIEZORD 24675
17-03-17 18:28:43.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:43.188 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.7 V.
17-03-17 18:28:43.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29109 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29108 (-126.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29107 (-126.5 uncal um), Max = 29112 (-126.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:28:43.188 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29109, posNoise = 3, negNoise = 2
17-03-17 18:28:43.188 -07 000000610 INF: Z Motor: After move to -0.127324, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:28:43.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:28:43.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:28:43.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:28:43.188 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:28:43.188 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:28:43.188 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:28:43.188 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:28:43.188 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:28:43.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:28:43.188 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:28:43.188 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:28:43.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:28:43.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:28:43.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:28:43.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:28:43.198 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:28:43.198 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:28:43.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:28:43.208 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:28:43.208 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:28:43.208 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:28:43.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 27991 150\n [Camera]
17-03-17 18:28:43.408 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:28:43.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:28:43.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:28:43.798 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:43.798 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:43.798 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:28:43.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:28:43.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:28:43.808 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:43.808 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:43.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) start.
17-03-17 18:28:43.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27991 778
17-03-17 18:28:44.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:28:44.198 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:28:44.198 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:28:44.198 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:44.198 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1071943272, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:28:44.198 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:28:44.198 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:44.198 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:44.198 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:28:44.208 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:44.208 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:28:44.328 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:28:44.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:28:44.328 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:28:44.328 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:28:44.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) start.
17-03-17 18:28:44.338 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:28:44.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:28:44.338 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:28:44.338 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:28:44.338 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) start.
17-03-17 18:28:44.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:28:44.528 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:28:44.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 27991 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-17 18:28:44.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1107365536, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:28:44.738 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:28:44.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:44.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1142787800, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:28:44.738 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:28:44.738 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:28:44.738 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:28:44.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:28:44.748 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:28:44.748 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:28:44.748 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:28:44.788 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:28:44.788 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:28:44.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:28:44.848 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 18:28:44.848 -07 000000610 INF: Imaging Cycle 13: ScanTilesCommand Cycle 13 time end. Duration was 156091 ms.
17-03-17 18:28:44.848 -07 000000610 INF: =================== Cycle #13 ===================
17-03-17 18:28:44.848 -07 000000610 INF: ===================  ===================
17-03-17 18:28:44.848 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:28:44.858 -07 000000431 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 18:28:44.858 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:28:44.858 -07 000000608 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 18:28:44.858 -07 000000608 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 13, FrontChillerTemperature: 3.974486, FrontChillerHeatSinkTemperature: 0.116952, AmbientTemperature: 18.73237, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.50684, GreenLEDSensorTemperature: 26.13498, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 18:28:44.858 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.